| NCBI Gene |  |
|---|
| Relationships |
|---|
| The exon, LOC108212762.exon7, is a part of gene, LOC108212762. |
| The genetic_marker, MK009401 1_38255184, is located in gene, LOC108212762. |
| The exon, LOC108212762.exon6, is a part of gene, LOC108212762. |
| The exon, LOC108212762.exon5, is a part of gene, LOC108212762. |
| The exon, LOC108212762.exon4, is a part of gene, LOC108212762. |
| The exon, LOC108212762.exon3, is a part of gene, LOC108212762. |
| The exon, LOC108212762.exon2, is a part of gene, LOC108212762. |
| The exon, LOC108212762.exon1, is a part of gene, LOC108212762. |
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. |
TTGATCACTAAATAAATAAATAATTAACTCAATTCAAAATGATTTCGAAT
TAATTTCGAATCCCAATAACTCTCCTGTTCATCATCATCATCTTCACAAC
AATCGCTTAAACGACACAGTTTCAGCCCAACAAACTCCGATACGCTGCCG
TTTGTAAATATCCTTGATTCTCGGACTCCCATGGCTACTCCTGCACAAGT
ATACAAATCAACCTTTTCTTCTTTTATCTGTTTTAATTGTATAATTATCT
GATTTAATTAGTATTTATGTAATCAATTGAACTATATTGGAAGTCTTAGA
TGAAAGCATTGGTATCATTACCAGTAGTTGTTGAAATCTTCCAATCTCTT
GTTATTTTACAGGACTAGTATGATGCAAATGCTATAAAATTTATATTGCG
GTGTAACATTTTCCATGCCATGTATGCACCCTGTTTTAGAGACTAGTAGA
AATCAAAATGTTAATTTATTAATATTTTACGTGTAGATGACTTTGTTAGG
ATGTATATACTTCATTTGTCGGTCAAGTCTCCCAAGTCCCAAAGTATAGT
ATCGCGTAAAGGATTGTTTACATAGGTATGTCGCGATGCCAGTAAGTGCA
AAAAGTTTTTTTTCCTAAGTGTTTTTTAATTAGTTGGTGCTGCAGTGTTG
GAGCTTGTGGTTGCACAAGTAATGTATTTGCAATGGATGGATCTGAAAGA
TCCTATCTACCTCTATATGAAATCTAGAGGAACAGCTTGATGTGATCGTG
AAATGCCTAATGTTTTTAACCATTTCTAGTTTTTACTTGCCTTAAAAGTT
ATTCTTTACTATGTTGACACTATCTCTTCCTGGTGAACATGAAAGTATTT
TGTATTTTGATGCTCTAAGTATGTACTCACGACTCACCTAAGTTACGTGA
GTACAAGGGCTTTTTAATGTAAATGCAGGGGGGCATATATGTAATTAAAA
AGATTAGATCAAATAATTACAAAATTGTCATTTATTAGTACTACGTACTT
ACCTAAGTAGTACGTCCTTAGGAGCAATTTTCCCTTTAGTTTTATATCTA
AGTACTTCAAGATGTTTATTATTTAGGTTGGAATGGAGATGGAGGGTTTT
GCAATTTATGATGCAAGGATGCAGTTAAAGAATGAGGTTGTTATTTAACA
CAAACTACTGCTTTGTTGAAGTTTATATGTTTTAAATTTGCAATAGTTGA
ATGCCTAATGGACTCCTAGGCAGGCAACCACCTAGTCATCCCGGCAGTTT
GCTACCACCTTGGTTCACCTATGCGCTTTAACTAGTATGCTTACTTATAT
AGTACTCAATTTTCTTGTGCTAAAAGTGTTACAACATGTCAACGTCCACC
TCCTTAATCCTTATTTGATTAAACTCATCCTGCTTTTGCTTCTCTAGCAG
GGTTCTTCTGGTTGTTGCATGTTGTGCTTTTAGGTTGCGTTTGATTTAGA
GTTGCTTAAGACTTTTTCTACACAGGTTTTATCTCATGTTCTTCTGTAAA
TCACATTTCAAAAGATTTGTATTACAAGCATCAGTAGATATCCTAAGTGG
GTGCAAACTTAGCAAAAAAAAATAAAAATGGGTGCACAAGTTAATGTCAG
TTTGTCAATTATTTACTATCTTTTTTCTATTTCATGTATGTATAGTTTTT
CTTCAATTCTGTTTAGTTTTGTATAGATTCTTTACTTCATAGGGTACCAG
GTACACAAAACCTCATGTAGTGGTACTAGACTTTTTGTGTCTTTTTCAAC
TTTCTGATGACATGTTTTCAATCTTTTATTTACCACAGAGAAATTTCATG
ATGTCTAAACTGATGCTTTCCACTTATGAATAATGAATGGGGAGATGCAC
ACAGTGGCAGCCGCTATAGTTCAAGCATGTCTCTTACTTGCTGCTGGGTC
CAAGGGTAAAAGATTTATGATGCCATATACCAAAGGTACGAAGTGGAGTG
GTGCATGATTAGTAATCGCTACTTGTTTTTCTTCTACACTGATTATCACA
TGCAAAGATTTCTGGGACTAACGTAGTAATTTTCAGCCATGATACAACAA
CCCCGTGTCCCGTCATCTGGTTTAATGCCAGCAACTGATTTACTTATTCG
TGCAAAGGAGGTGAGCCTGAATTCAGAAGTAGCTTTGACGCAAATAAAAC
TTAAATACCATATATAGGATTGAATTTGAGTGAACTGATTAAACTCATGG
CCAGGCCTGAAAGTTGAGTTTGGGGCGTGGTTCACCGTAAGTGGCTTTTT
AGCTTTGTTGGTTTCGTTCATCACTTTTTGTATCTCGTAGAGTAGTCTAG
GCGTCTGAAGAACTAATATAAATGGTAAAAGGATTTCTAGTTTTACTGAT
AATTTATGTATAAGAAAACTTTTGGTGTCTTTCATCTCATATTACAACAA
AGTTTAACCTTGCGCTGTAGTATGATATATTCATTAAAAACCAGTTGGTC
TTAGATTTATATTTTAAATCGTTATCGAGAATGTGAACATTTAGTTTGCT
ATTCTCTGCTCATAAAGTTCCCCAAAATTTGATCTGTGCGGAACTGCTGA
AGTAAATCATAGTCACAGAACTCGTTGCTCATAGATTATAGTTCTAATAT
CCTTGATCGCAAGTACCGCAATGTCAGAATGGATCCATCTACATGTTACT
GTACCTTGCATGCTATGTTTCGGATGATCTGGACACTTATATATAATTGC
TTTTGCAGGTAATAATAAACAGAGACATCACAGTTGATCTGGCAAGCACA
CTGGAAATGTAAGAACAGTGCTTAGTTTATTAAAATTTCTTATTAAGTTA
TGATTAGTTGATTACTGCTGACATAAATGAACCTAATAAATGAAGGAAAT
CATCTCCCCTGGGAAAAAGAAGGGAAAATAAAAGAAATGTAGAATAAAGT
AAAAATATTAACTGAGCGCTCATTAGAAAATGTGCATACCAGTCACTTGA
AGCTGTGGCCAATGTGAAGAGGCACCCATTTTATATGGATTCCATAAGAG
CTAAAAAGACTGGCGTCATTGATAAGGCGGTTATTCAAAATCTAACCATG
TTCTGCATATTTAGTTTCTTCAATATTATCATCCTCTTAATTTTGAAATT
TGCATCAGATACTCTGGCATGGCCAGGAAACGATAATGGCAGGTGCATCC
TTATCAGAGGATCGAGACAAAATTGCTGGCATCAAAGTTCTGGTTGCAGT
TTGAGGAGTTCTAGTGGAATGACATGTACTGCATGTAAGTCCCACTAATG
GTATATTTCTGATGAGTTGCAATGGTCAATGAATTTCTAGTTGCTCTATG
AAAAGCCAATTAATCAAGCACATGGATTTCGGTACCCCATTCTGAAGAAT
TGTCCAATGCCCTTTGTGTTTTGCTCAGTTCTAGTTTTCTTGCATAATGT
CGCAATATGTATACTGATCTTGTTAGAGTTGCAGAGAGCGATAGAATGAG
TGAGAAATTACTGGAGAGGAATAAATGAAAAGGCTAAATAGTAATCAGAT
AATAACGTAGTGAACAAATAATGCATTAGGGAGTTGATGGTGGTGTTTTA
TTCTTTGTGACGTAATGTTTCACCCACAGATCAAATAATATAGAGCTCAA
GATGCAGATCAAATTTCACCGGTTAAATTTTTAAGGGAGCTGGTCCCAAG
CAAGGGTTTGCTAGATTCCCCATAAGCTAGGAAGCATGAACTCCTCAATT
CAGGTGCCGTATGCCCAAAACCAACCATGTATAACAACTCCCTCTCTGAT
TTCCCCAGCTACTGATTGCGCATGAGTTGGTTACCAGTTACCACAATACG
GGTCCAACTCCTGTGGGCTGTGGGCCACTGTCATCCCACACACCCTCACT
ATCATGATCCTCCTTTCATGCCACACACCCTCACTATCGTGTTGCTGATT
ATCCCAAAAAAAAGTTGGCACTTACGACAATATATCATTTAGATCACGTG
GCCGCAACATATTGATGATCATCCATCACTGAAACAAAAAACATATCAAC
ATATATTCCATAAATTTAAACCATTATTCTACATAAAATTAACTAGATAT
CAAATTTTCAGTTAAATATAGCAAATATTCTTCATTTATATGTTGCAGGA
GTAGAACGAGTGATCACGTGTTCATAAGCTCATAATGGTTTAAAAACTTG
TGATAAGAATGCAACAAATTTCAATTCTATTGCTTTATAGTTTAGTTAAA
AATCCCGCTCTCCTCTCCTTCTATCTCTGTGTATCCCTTTTATTTTGGTT
TTAGTCACAACTCTCATCTCATTTCGACCTTTGTCTATTTACCCTTCCAA
ATGCCGTGCAAAGTAATTATATATTGAAATATAAGGAGGTACCTGATTCG
TAGAATACCTGCACATAATGTGCTACACTCTATTAAATAATAATATAACA
GTAAACTTCATAACAGCCGCAGAAATTTCAGTTATTAATTATAATTTCAG
TTAATTTAGGCGTATCATGAAGAACATTGTAACTTAGCGAAAAAGGAAAA
GTTCGTAATTGTTACTTAAATCTGCATAAATTTCTAAGTTTAGAATTACA
CTAATTGTCAACTTTGTATACTGTGATGACATGTATGGTATTGGAGTGGT
TTTCTGGACTTGAAAAATGAAGTCATTCACGGGAGAAACAAAGCTCATGA
TTTAATGTTGTAAGCAAGGATCAGCTTAGAATTTCAACTTGGAGCAGTTA
AACGATTATATAATATTAACAAGCTCGTAATAGTGATTAATAGGTTTCCT
AAATAGATAATTTTATTTTTTTTGATATTCTGGGGCTTCAATTGTCTAAC
CTACCATGCAGGGGAATAGATCCTTGCACTACATTAAGATTACAAAATTG
ATCTATTCACTCAGCATATGGAACACAATTGTAAAATATACCTTGTGAAT
GACTAAATTTTGAATATATTATATATATGCATATAGCAAGTATCTTGTTT
ATTTTTAATTATATTTTATGCAATGTCTACAGGTTGAATTTGGGTAAACA
ATTCTGAAGGTGAAATCAAGTTCAATATTTTTTTCAAATTGAAGACGACA
AGTTGTGTCAAGGCTGGTGGTTGGAAGTGGTTGTACAATAGTTCTCCTCT
TCTGCTTACCAATTGATTGCTGCTTTTAACTTGGGAACAAAGGTTACTGG
TTAGTAGCTTTTCGCCTTTTACTTTCAGCTAATTGCAGTTATGTCTTTTG
CTCCATGAACGCTAACCGTAATTGACCTTTAAACTTTAGATGCACACCCT
AAGAATTTACTTTAGTGTATCCTAGTAGCCGGGGTCCTTGGGAAGGGAGA
ATGAGAAATACAAGGGCTGATGGAAGCTTATGAGGTTGAACCCTGCGAGT
AGATGAAGGGAGACTTTGTTTTATTTTGGCTAATTAAGCGAACTTTGTAT
ATTTCTATGAGAAACTTGGGTATGGGTTAGGAATGAACATTATTTAGATT
GTGTTCAATTGGTAAAAATAAAACGAGATGCATAATTGTTGTTTGGATCT
CATTCCTTGTGCTGTATCGTTCTTAAACCTCTTATTCATTGGTAGTATCA
ATTATGTTAAGATCAAACTCTTCAGTGCTTCTGTTGCCTCTATTCTCTTA
AAATTTCATTCTCATCCACCTCCAAAACACCCTCCCTCCCAACCAAAATC
ATCTGTTGACTTAACAGTTTGACACAACAATGTAAAATTACAACTACAAT
AGTTATGGCGTGTAGGCAAGAGCTCCATAGAAACAGTCATAAACCCTACA
AGCAAGGGAATTATGCAAGTGTTGAGGCATAATAATTCCCACATAAAAGT
CTCTGAACGGTAGTCAGAATACTCAGAACCTGTAGCATGAGGACCCAGAA
TCATTAATTCATGTCAGAATGAAATTCTAAAAGTGTGGGTTAATATGGAG
CCAAAATTCACAAGGGACACAATTCTTGATGGGTGGGCTAAATGAGCTTA
AATTCTTTCTTGAAACCTAAACTCCCTTTTAAAGTTTATTTTGACCACCA
GACCCGTTTGCACTGAAAATTAATCACCGTTCTACTTTTTTCTGTTCTCC
CGTTGTGAAGTCTCTGAAAGCTTCGAGTGAAATGAGATGATGTTTGGGTG
TACTTGATCACGATTTTGACTTAATTTTGTTATTCCAAATATCCGATTTA
AGATGTTATTTCATTAATCTTAACCGCCCGAAAAGTGAAAATCCATTTAA
ATCATACACTGGTTATGAATTCACTGAATTCTGAAAGAAACCAGCTGCCT
AAAGAGTTCAAACTAGCACTGTATGTGGTATTGTGGTGTGTGGTAGTGAG
CTAATATGATAGCAGCTGTTGAGACTTGAGAGTATGGTCAAAAGTTTTAC
CACCTTTGGCTGGAAGGCATTAAGGCACTTTCTTTATATCAGGAAAATTT
GTAGTATATGTAAAGTATAGAGAAGTTGAGAAATCAGTTAATAAGAAATA
TGCTGCAGGTAAAAAGAATCATATATAAAAGAACATTAGAATTATAGGTA
TCCTTTCAAGGACAGGCAATAATAAGCTCCATGTGCTAGTAGATAAGGTG
CCCATGATGGTAAAATACGGACAGTGTGGTTCCAAAAATAAAGGAAGCAA
TTGATACAACACAACAGGCAATATTTCTTGTATCTGCATTTCTTACTGTT
TCTTCAATATATACTGATATAGTCTTGTGTTTGTTTAATAGGGTGAAAGC
TGAACTCATGCAAGGCTGCCAATCTTCTCATGAGACCATCCATATTCTTG
CATACTTTAGTAAAATGTTTTTGCCATAACATATGCTCAATTTCGTCTAA
CCAAACTTTTAGTTACTGCTATATATGAACTCTAATTCTCTATTAGTCCC
TCTTTTTAGTAAAATTTGAACACTTTTAATATCCTGTTTTACAGTATTTC
CTTCTGAGTGGTGAAATGGTTTTAGAATACAATGATGATCAACAAAGTCT
CGCACGGGTAAGTTCAGTTCTTTGTACGCATCATCCTCCTACACTTTCTG
CTCCAATCTTTAATGTCTGCGTGCATGTCACTCTCCTAGACTTTCTACTA
CAATCGTTAATGTCTGTCTGCGTGCACGTCACTCTCCTCGACTCCTTCCG
GGAGACGCATTGTTGTGATTTGGTTTGGTTACCACTCAGTGAAATAATTG
TGCCACGGGATACTACAAATGATGAAATAGAAATGCAGCAAGCAGAAAAA
AATGAAGGGTTGAACTCAATCATACACATATCAACCACATGAAGGACAAT
ACAGAGTATGTAAAAATTGAATTGTGTTGCTGGCAGAAAAAGCGGTGATA
AAGGTAAAAGCAGGTAGACCCTCAAGATTGTTGCATTATAAAGATTTATC
ACCAAACATGTTTTTGTTTTAACAGAGAAAGTGGAAACAACTGTCTGTGC
TTTAGTCTGAAAACATGAAATTAGGTACTTTTGCTAAACTAAACAAGGAA
TATACAACTCACACTTATATATGTTTATATAAACTTGCACAATTACGGCC
GACGGTGGTCCTGCTTGCCAAACATAAATTTATCCAGAGGGCCCTCCCAG
AAACCCTTTTTAATATTTCACGAAACAGTGTGGACTGATATATGTGATTA
AATTGAATATATATAGTGAAATATTGATAGTTGGTGGCTTGTTGCATTAT
TGAAGATACCGGAGGTAGATAAATGTTGAAGAGGAAATCCATTCTATTGT
GCATGGCATGTGAACATCTTTAATATGTGGTTTCATGTTCTTGTGAATTA
CAGGGTGTGACAACACAACAAGTAATATTATGTGTACAAGGCATCTGTTG
TGTATAAGGCATCTAGGTTTATAGCTAGCTAGTTTTGAGGATATGATAGA
AGGATCCTAACTTTCATCTAGAGTTTAAAGTACTCGACATTATTCGATTA
CACAAAAATTAGTGAATCCATAAAGATCTTTCAATACTGTCCTCGAAGAT
GTGGTGATACGAA