NCBI Gene | ![]() |
---|
Relationships |
---|
The mRNA, XM_017376233.1, is a part of gene, LOC108206059. |
The genetic_marker, MK011731 2_1840386, is located in gene, LOC108206059. |
The genetic_marker, MK009433 2_1840411, is located in gene, LOC108206059. |

Name | Description |
---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here. |

Transcript Name | Identifier | Type | Location |
---|---|---|---|
XM_017376233.1 | XM_017376233.1 | mRNA | DCARv2_Chr2:1833696..1841026 |
TAAAAATACACACGCAGAGCAAACTCTCTCCCTCGTTCTTGTGCAGCGCG
CCCTCTCTCTCTATCTCTCTCTCTCTTCTTTTAAATACCCCTGTGCCCTA
CATTTGATTCCCCCCTCCCCTCTCTCATTCTCTCCCCTTCTGCATTAACA
TGAACACCTAGTTACACACACAAAAAACACACACACATTCAATAATATAT
ATAATAAAATACATAGAGTGAGCTACAACAGTTGTTTAGCTCACTATTCA
TACAATGTCAGCTTGCCACTCTGATGATCCTCGCATCCATGCCATCAAAT
CCAAAATCAGGGTTGTCCCCAATTTTCCCAAACCAGGTTTCTTGAATTTT
TTAATTTTTTTCCCATGTATTTTTTAATATTTTTCAAGAAAAATGGGTTA
ACTATAATTAATTTGATTTATCAATGATTATTACAGGGATTATGTTTCAA
GATGTGACTACACTGTTGCTGGATCCAAAAGCCTTCAAAGACACAATGGA
CTTGTTTGTTGAGAGATACAAAAACAAGAACATTTCTGTTGTTGCTGGTA
AAAATTCAATCTTTTTCACTTTAAACTTGTAAAAATTCAATCTTTTTCAT
TTAGAACTGAGAAAAATTTAATCTTTTTCACTTGGAAATAAGAAAGATTT
GGTCTTTCTCACTGGGAAATAAGAAAGATTTGATCTTTTGAGTTGAAACC
CTTAAAAATTTGATCTTTTTGAGTTTGAAGGTCATAAAAATTTAATCTTT
TTTACTGTGAAAAGGAGGGGTCCTTTTCTCATAAAGTGGGTGTTGGTTCT
TTTACTTAAATGCATATATAAGTACACATGTATGTGTAAATTGTAATGTA
CTAATGTGTGTATGTTGATTGTGGTGCATTTCATCTTCTTGGCTACATAG
ACACATATGTAGATGAATGTTTTTATGTGTGATTGTGTATGTGTAATGGG
AATATGTTGTGTCACAACTTTTCAACTTTTGGGGGAAACTTAAGTGTTAC
TTTAAATTTTTCGATGGACCCATCATTGTTGTTGGCTGGTTGATACACAT
TGCCTTGGATCCAAATTTGTATAGTCGTGAGTAACTTTTTGTATGCTCTT
ATGGAAGTAACTGTGGATTTATGTTGCGTTTGACTATGGTGGGTGTAGTG
GAATGTTTCATTGAGCTTAGTACCTTTTCACGAGGATTATGAGCGGCGTA
GAGTGTTTTCTGGGCATGTGCAAGATCTAATTTTGGGTGGATAATGGTGG
TTGGTCATGGATTCTTACCCAAGCTGGACCCACTTGCGTAATGATGGGTT
CTTAGATTGGCCCTATTAATTTTGGTTCCATTATATTATGATGATTTCAA
CTCTCTGATTCATTTGTCTTTCCAGGTAATGTAATTTTCTTGGATTTATG
ATGAGGCTTGAGTGCCATTACATTTTTCTGATAACAATCATTGCTGGAAA
GATTTTATGACAGGCCTGTAGTCCTCCACTATAATTAGTGGCTTTCTTTG
TCCTTACTGGGATAAAATTCTCTCAGTTTCTTGTTACTGCATTTCGTAGG
CATCAGAATTTTTGTGTCCTTGTGCATTTGTCAGTCCTTGACTCCTTTCT
TAGGGCAATATGTATAAAAACTGCAAGTTTGCTCTCACTTCGTGAGTTGG
AGCAAGACCTGCGAAGCGGGAAGTAGCAATGTTTGACATATAATGCAAGT
AAAAGAATGGCAAAACCCCTGTGGTTATGTGCTTAAAGCTGACTGACTTT
ATAAAAAACAAAGACAGAATCCTATTGTCCTTCAAAAGTGTGAGTTTCAT
CAATTTTTGCTAGTTTCACTGCTGGCATTTTCTGTAAGTTTACGCCCAAG
ACACTGGTTTAATTTATTTGTGCATGGGGAAGTAAAGGGCTGTAGAGCGT
ACATGTTGCTTCTATCAAGCCATATTATCACAAGGTAAATCATGAATCTT
CTGTCTAATCTGTACTATGTAATCACCCGACATACTACTAACAATATGAC
CTCAATATCAATTAGAAGGCTTGGATTTCAATCACAATATATATAGAGTT
TAAAGATGGAATGATTTGCATGCACACTTATTGGTCATTGTTTTGGCGTT
ATGCATATATAGTGTAATACTGTAATATTTCTATTTGTGTACTTGCGTGG
TGATATTTGTCTTACTTTGTTATGGCGCATACAAAATATATAAAAACTGC
TGGTGACAAACTTTAGATTTGATTTTAAAGATAGTGGTGTTCCTTTTACA
ATATCCATTAGCAGAGTCCAATAGTCAACATTTATATATTAAGTTAATAA
ACATATTCCTGAGTGCCTTTCTGAATCATCTGATAGCATGTTTCACACTT
AATAGTGTATGCAGCTTGAGTAGCGTAGGGGTTATCATTTCTAGTGAATT
TTTTTATACACCGGTTCTTTCTCCTCAAATATTTGGTATAATGATTGAAC
TGCACACTTGTGTGATAAAAGCTATTTCAGATAACACAGTTCCAGTTTAA
TATCCATTGCCAAAAGCAGAGGCGGTCTCGAGTCATTTTCTAAATAAACT
TTACAAAAGGGCACATTGGGTACTTGCTTGATAAATCTGTTATATTAGAG
GATTCTAGAAATAAGTGTTATGACTTATTGTACAAAACATGTTTTGAGAT
GGTAGAGTTTTTATATTTTAATATAAAAATTAAAATGGCAAACAGATAAT
TCTAATACATTTCCGAAGTCTGGTTCTGTAACCTGACTGAAACAGTGGCA
TTTTAACTTGAAAACATGATAAAATTACGGATTTAATGCAAAGAATTAAA
GTCAAAGTGATTTAAAAATAAAAGCATAGCCATGTTTGTTGCAGACCTAT
AAGTTCAATTGCACAATTAGCTACATTTGCTAGGGCAGTTATGTAGATAG
TTCAAGTAGACAGAATCAGAGAAACTGAGCACTATGTCACAAATAGTGGA
CTCAAATTTTGTGACTCTGCTAAGTGATAGGTAATCTGTTAAGTGCCGAG
ATTAGTTTATTTGTTGGGTCAAGTATTTGGTGTAAGTGAATTCTGATGCG
CATTTAATTTTGCCAACATCTACCTTTTGACAATAAGGAAACTTCAATCG
ACGGGGGGAATTTATGGTATTATATTCTTTAACAGAAAATTTCATAGTTT
TGTTTTCCCTGTCATGTTTTATTTAAGATTGTATTTGATCCCCCTCTTTC
CTCCAAATCCCTAATATATCTGTTATTTACAGGTCAGTTTGGATATTAAT
GACAATTCTAAGAATTTTACGTAACAGAACTGTTTTCTGTATGGTCATAT
ACCTTTATGCTTTGCTTTGTACACACATGAGATTGCGTTAAAATATCATG
CTCTTACTGAGGCTTTTCTAGTTTGTTAATTTGGGATATCATACTGCAAA
GTTAAACTCTGGATGTTTTTGCTTTTGTAGGCATAGAGGCTCGTGGTTTC
ATATTTGGTCCTCCCATAGCATTGGCAATAGGAGCGAAATTTGTTCCTCT
GAGGAAACCTAGAAAGTTGCCTGGTATATCTTGTCATCCTTCAGATCGTA
CTAAATCCTTTTAATTACTGTTATGGTACAATAAAATATGGTTTATGTCA
ATTATATGTTTGCATACTTCTTCCCAAACTAACATGTTATCTTCCGGATA
TATTCTAAACATTTATTCCTGATGCTTTTCTTGCTCATATTCCATTTGTC
ATGTTCAGTAATTTATAAGGCTCTTATATAGTGTTCTCATAATGCAGGGG
AAGTAATATCAGAAGAATATACTCTGGAATACGGAAGAGATTGTCTAGAG
ATGCACATTGGTGCGGTTGAACCTAATGAACGAGCTCTGGTTGTTGATGA
TTTAATTGCTACGGGTGGCACCCTCTGTGCTGCTATAAGTTTACTGGGTA
CTTCTCAAACTCCCATAAACAAGAATTTAGTATAATAATCACCTTGACAG
ATTAAATGGTTTCCTCTGGTAATTGACTCATGGCAATACCCTGTTACTGT
CCATTTTAAACTTCAATCCAGATTTAATAGTTTCTTCAAATCACCTGATA
AGAGGATATTATAATGTGCAAGGTGTACCATGTTCATTATTCCTGAGGAG
CAAACTGTATGATTGTTGAGCTAAATTGTTTGTGCTTTGCAGGTCGAAAA
TATTATTATTGTAATTATTTTTGTTCTGTGCTAGGAAGCTGCCTTTATAT
TGTTCTATGTTAAAACTCAAGCGTTCCCCCCTCTTTTCCTTCTAAAACTG
TCTCATGCTTTCAGAATACCCACCATATTAATCCTTTTTTTAATATATAT
AAGACATAATCAAGATCCCTATTGCATATTTTATGGTACTTATATATTGT
AACAATTACAAGTGTTGAATTCTATAAGATCTGTAATGAAGCTTATGGTC
ACAGTATACTATTCCTCTTCATCTACTGCTACAATGATTTATTTAGTAAT
TGCTTGATACATAAGAATTTTAATATCGTTTCGACAGAACGTGCTGGTGC
TGAAGTTGTTGAATGTGCATGTCTGATTGAATTACCAGATCTGAAGGTGA
GTTTTCCCTTTCAAAGATTAGCATAATAGTTAAATCCTGTGTTTCTGCTA
CCAGTTCTACTTCATTTCCACCGGGTATTCTCTAAGATCCTTGTTTAATA
CTCCATGTATAATGTTATAATACTCACATGTGCACATCGTAATTCGTAAG
TGTGATTAGGCACATCTTAGCCCCAAGAGCTAGGTCTCTCAGGCTAGGCT
CCTCACTGAACACACCCAATTAATTGTGGAAACATATAAGGAATCGTTCT
GGAAGTTTGTCAATAATGTGCGGAAGTTTTTAGGGAATCAATCATTCTTG
ATGAGTGAGAGTAGTTGCATAAGGGGGAAATAGAGAATTTCTACTTCTAA
GAGTTGTATATCTTTATAGGTGGTAGGGATCAGTATATTATCATATCTAA
TATCTATTTAGTTCCCCGATTTATTACTTTCCAAGGCACCCTTTAGGATG
CTTTTCCTGAAATTAGTAATGACATTTTTCCTTAATAGTACTTCCTGCCC
ATTTATAAGCAGAATATTGCTATGTGTAGAAGTTGGTACAAGTGAGCACT
TCATTAGCATTCACTGTTAGCTCTCTACTAAGCATGACAGCCCTATGTGA
GCACATGAACTGGGGCTGTATCGGCTTCTTCATGCAAGATTTACCAAACT
GTAATAAATGTCTTTTGAAGTGAGTCATGATGAGAGCTGGTTGCATCATG
TTTAGGACTGCAAATTTATGAGGGGAAGTTTCTGCAGTTATATTGATGCT
GAAGTCTCTTTGCTTGCATTATTTGATATCAACTTATCTAGTGCTTGCTG
CCTAATATCATCGCATTAATCTGGATGCACATCTATACGAATGTGGCACT
GGGACTAAGTTTAGTTGAGAGTTTTTGGACTAGGACACTTCTATGACTTT
TTATACTTTTCACATGTCAAAGAACTGTAACATTTTGGTAATTAGCCTTA
AGAGAACACCACCAGCCAGAATTTAAAAGTGTGTCATCCCATTATTCTCA
TCTAGTACTGGAGGCTAAACTATAGTCACGAGTTCAGAATTACCAACATA
TATACCAAAATTTGCATTTCCTATTCAAATCATCTTCATTACTTTTATAG
CACAATAATTTGAAAACAGTAGGCTATTTTAGCAAACTACAGAAACCTAA
TAGTAAAATCAGGTCAGGATAATTAAGTAAAAAAATCAGGTCAGGATCCA
TGTGTTCATATTTACAGAGATATGTATGATTTAGTATAATAGAAGTATGT
TTTAGATCGGAGTCATGGTAGGTATGCATGATCTTGGCATATACCAAAAG
TGTGAATTTTGTATTGGAAACATGCTGCTAAGTTGTTGAGCTCTTGTGTT
TCTTAGTCAAGCAGAGAACTCCATTGTTGCTGGCATTACTCTTCAACCTT
TTCTTCATGGTAGTTGGTCTGCATGATTTTGGCATATACAGGAAGTCTAA
ATATATGTATTAAAAAGTATGTTGATAAGTTTTCGAGCTCTTGTAGAGCT
CCGCTGTGGCTAGCTACTTTTTAAACTTTGCATTGCGAGTATGTTAGCAT
AGCGGAAAGCATTGCATGTACACCAATTCACAACACTTGAGCACTATTAC
CATTATTTATGGCATGGCAGCCCTTATTTCGGCTAAAAATATTATATCAG
TTCAGCTTTTGGATGAAATTACATTTACCTCTGAATTTATTTAAATTAAG
TGCAGCATACCTTTAGTTCAGGGAAATGTTCTTATTGGCTAAACTAAATG
TTCAAAGTTATTCCTATAATTAGTTCAGGGAAATCAAATAGTGGTCTAGT
TTACGAGTTCAGGACCTAGTGGAATAATGCAAGTTCTCTGGAGAGGTTCA
TACTGCAACTTAATGTTTTAGGAGGTGTTTGAGAACATTATAGAGCATAA
TGATTTTACAGAAGAACTATTTACGATTATAGCTTTCTGAAGTGTCACTG
TGGTTGATACCTACATGGAATGCATAATGATAATGCAGAAGCTAACTTCT
CAATGATTAGTTAGCGAAGCTGTTACTGCTAGGCAAAAACTGCCTACCAC
AGAGCCGACTCATGAAATATGCGCTTTTGGATCAAGCTGTGCAGCAATTG
GTGTTCAGTTCAAGGATCTAAGTGAACATTAATTTGTCCTTGATGTTAAG
TATGATAGTCAGGCCTAAAGTGCTGCTGACTTGGTATTACAAGTCTATTG
CAAGTTCACTTAGACAGTGTTTACTGGGTTAAACTTGCTCCACGTCTGTG
ACGTTAATTACTTATTCAGTGTAGTTTGTTCCAATGATCATCTGAGCCTG
GTTCAGATAATTCAACTCTTTTTTTTAAAAAAAAATTTGTTTGTTTAAAA
GCATGTAGAATTTGTTATACTGAGCATGAAGTAGTGTAGTCAGCAGTTCT
TAAACTGAATAATTTCAAGATTCCTTATATATATTGTGTAGATTTTTCAT
CAAGGTACTTTTTGTTTGTGGATTTTCAGGGTCGTGAGCGGTTGAAGGGG
AAGCCATTATATGTTTTGGTGGAATCTCATTAGCATTGGAACAGGGTGAT
ACGGTTTAAGTTACTATGATGCAGCATGCTAATTTGTACATTAGAGGGCC
GCCATCTACGGCCATTTATCTCTATGAATAACTCCCCTCATTTGTTCTCT
CCCATTTTCTAAGTAGTAATGAATTCTTAAGTAGTGATGAATCCTTAATT
CTCCAGAGCCCTTTAATTTATTGCGAGATGAATCATTAAGAGCCTTTAAT
CCTTTTTAAGGTTCTTGCAGATCCGAAAAA