DCAR_001431 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_001431

Identifier:

DCAR_001431.gene

Locus Tag:

DCAR_001431

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_001431, is a part of gene, DCAR_001431.
The genetic_marker, MK004396 K1840, is located in gene, DCAR_001431.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_001431	DCAR_001431.mRNA	mRNA	DCARv2_Chr1:15200912..15211036

Sequence:

ATGTTTGTGCTCTCCAACTACAATAATCAAAACAAGCCACGCGCTTCCCT
CAACACTACCTCAGCTCCTCTACTAGCTCACTCCGCTATCCAGAGAATCG
CCGACAAGCTTCGCACTCTAGGTTTCGATGATAACATTAAGAATGATACT
ACAGAGAGAAATAAAATCAACGATTCAGCTTCTCCCGGACAAATCTTCCT
TCCTTTACCCACTCATTTACCTAAGTACCGCGTTGGCCACACATTCGATC
CCAGCTGGAGCACGCCGGAGAATCCCGTGCCGCAGCCCGGGACGGGGACT
GCTATTCGGCGCTATCATCAATTGCGGAATGACTTGCTTCTTTCCAAACA
GAAAAATGATCAATCGCTGAATAATGATGATGATAATAGTAATTGTGCGC
CTACTTTGGCTGAATTGACCTTGTCTTCCGAGGAGCTGAGACGGTTAAGG
AGTGTTGGTATTAAGTTGAAGCAGAGACTCAAGGTTGGGAAGGCAGGGGT
TACGGAAGGGATTGTTAATGGGATTCATCAGAGGTGGAGGCATACGGAAC
TTGTCAAGATTAAATGTGATGATATTTCTAGGCTGAACATGAAGAGAACT
CATGACTTGTTGGAGGTACAGAAACTCCTTTCTTCTTTCTGCCTTTTTTA
TTCACAACTCACTCGATAATGCCTTGGTTTCTAATTCTCTCTCAAAACCT
GCTTCATTTTTTCCACGAAATCATTGTTTTTGGCTATGCAACTCGCAACT
GCATCTTTGAACTTTCTAAGTTTAATGTTATTGATATTTTAATAGCAATT
AACAAGTTACATACTTTTATGCAATGCTTCTAGTGCAATATGGTTGCAAA
GAAGACCTTAGATACTTCTAGCCTTCTGCGGCAAATTGAATCCACACTTA
TTCACACCACACATTATATATATTAATATATTACGTACAGGTTTTATAAA
AAATGCTGGTGCCATCCATGTACAATGGAGACAACGAAGCATACTTAATT
AAAATCCACTAAAATCTGATGATATTCAAAAGCTGATGGATTTTTTGGGA
CTATAAATTGATGGATTTTGTGGGATTGTTCAGTGTATATTATGTTTCTA
GAAATCCACTATAATTCACGAGAGTTTGAAGGATTGTGCTTAAATCCTAA
TGACTCTACGGCATTTTTACCTCAAATCCGCTAGACTCCACATAAAATCA
AAATCACATACGATACATTAAAATCCGGATTGAATACGCCCTCCATAATA
TTTACTTTTTCGGTGGAATTTCTCAGAGAAAAACAGGAGGATTGGTTATT
TGGAGGTCTGGGAGTAATATGATAATTTACAGGGGAGCAGATTACAAGTA
TCCTTACTTCCTTAATGAAGATAACGATTCAAATAAACTTACCTTACGGT
TTAATGATGGGATAGATGGTGAAAATGAGATCTGCTCATCCCATATTGGG
GGTGTCAGATCTGCAGTGAGTCCCTTGTCTAACAAAACTGTGCAAGCACC
ATTGATACAAGGTGTAGGTTCTCCAAATGTAGTACGATTTCAACTGCCTG
GGGAGTTGCAGCTTTTGGAAGAATATGACCATCTGTTGGATGGACTTGGT
CCACGGTTCACGGATTGGTGGGGTTATGATCCCCTACCTGTTGATGCGGA
TCTTCTGCCAGCTGTTGTTTCCGGATACCGAAAACCTTTCCGCCTTCTTC
CATATGGAGTTAAACCTATACTAACAAATGATGAAATGACCGCATTAAAA
AGACTGGGCCGGCCTTTACCATGCCATTTTGCACTAGGTAGGTTTTCTTT
GAACTAAAAGACACTGATATTTCTTGCTTTCATCTGTCTAATCTATTTAT
TCTTCATATCAGGCAGAAATAGGAAACTTCAAGGTTTGGCGGCTTCTATC
ATAAAGCTTTGGGAAAGTTGCGAGATAGCAAAAATTGCAGTCAAGAGAGG
AGTCCAGAATACCAACACTGAATTAATAGCTAAAGAGTTAAAGGTTAGTA
AAAGTCTAAAAATAAGAATTTAATTTATTTTTGTTTTGTCATTCACATGG
TTCGTTGTTGGACTGCACACTACTACCAACTTATGCCTTTTCCTCTTTAT
AGAACTCATTTGGTTAGCAGAGCAAACTATTGTCACATATACTTGTTAAC
TTGTTATATGACTTCCACGATTTCCTCTTAAAGTCAAGCTCTTGATTAGG
CCAAATCATTGTGTACTTCAAACAACATATATTCGTATATGACTTTTTAG
GATGATTAATTTTGTCATCTTCTCCGGTACCCTTTTAGTTGCTTCGTTGT
ACCGCAGATTTGGTTCAACACTTCTTTAACATATCGTCTTTGTAGTGTAG
TGTCTCCTACTGGTTATCTTTGTCTCTGGAGAATTAAACCGTATACTATA
TAAAAGTCGAGGTGGATAGATAGAGATTGCTTTATGTAGTGAAGTTCTAC
ATTACTTTTGGTGTATTTTCTCGCATTGTTTTGTCTACTATAAACTTTTA
CACCTGAACAGGGTTGAAGGTGTTGTAGCCCAACTACTGGATTTCAATAT
TTTACCAACATACAATACTCGGTGACTGACCGTGTACAATCCACATGCCA
CCTTATATGACTCAACGATATAGATAATAGTAAACTGATATTATGGTATG
CATTGCAGAAGCTATTAAGTAGTCAGCAACAGAACACATACAAATTTTAG
CCAGGTTCGACCTTTAGTCTAGCTTCTGGTCTACCTCGTGATCCCTTGCC
AACTTAGTTTATTAGTACAGGTTGGTTTTGGATTGAGTTGTTTTTTTTGT
TGTTGTAGTACTTAATGTTGTTATGGTAATCCTGACAAAAAATAGTTCTT
ACGGTATTAGTTTGATATAATAAATAATATTGTTGGCACAAAGTCACTAC
ATTTGGATCTATTTGTATGGTTTTATTTTAAGTAGTTTTTTCTGCTTGTC
GTTTCTACTGTATTTCATTTAGTTGTAACTAATTAGATGTTATGTTTTGA
TATTTAAGCATGATATAATGCTTTACTATCGTTTCTACTATATTTCATCG
TTTATTACTATCGTTTATAAGCATAACTTTAAATATTTTAAATTTTGATT
CTGTATGTTTTAGTATAAGACTCAGTACATTGGCAATGTATGGAACTTTT
GCAATTGTTTAAGGTTAATTTTGCTATGAATATTAATATAATCTCTTATT
AGAATTATTTTCCGTGTCCCCGTATCCGTGTCCAAATTTTGGATGATGTC
CCTGTGTCCTAAAATTTTAAAAATTTCCGAATCCGACTCTCGTTTCGTGT
CGTGTCCGACACTCCGTACCCAAGTCCAAGTAACTTAGGTCAACACGGGT
ATGAAGGCAAAATTGATGAGTCAGGTAACAGAGCCTTTATCAGTTAAAAT
GGTGTTTGATACCATCGTTTGTAATTGCATATTAGCAACTATCTGTAGTT
GCTTGATCCTTCAACAAATTACTGTTAAAATGTTCATTATAGTGTAAACA
TGGATTGAAAATAAGACTTTACTAGCCATTATCCTTATAAATTATTAAAA
CTTAGATCTCTACTAGTATCACCAAACACATACTCCCTCCGTCCCTCCCA
TTTCTTATCAAATGGGTTGGGCACGGAGGTTAAGAAATATGTATAAAGTA
GTGGAAAAGAGGAAGAAAAGTGGGTGAAGTGGTGGGACCCATTGATTTTT
AATGTATAAAAAAAAGACAGTGGAGTAAAAGTAGTGTGAAAAGGAAAGAA
AAGTGAAGAAGTGGTGGGACCCATTAACTATTTTTGGTAAGTTTTGAAAT
GTAAAGAATTGGATGGAACACCCCAAAAAGGAAAGTGTAAAGAAATGGGA
GGGACGGAGGGAGTATTCTATATTTTTAACAGACAACCAGCGAGTTGCCA
AAAACCTGTAATAATTAGTGTTTTATAGAGTGATAACATTTGCCAGGTAT
TCTGTTCTAAACATTTGTCTATATATTTTAATCTACCANTTTGCATTTGA
TGACTCTTTGCAGCTTCATCAAAAAAATTTGTAATGTTTTGCTTCTTATA
ATTTAATCTAAGATTTGTTCATAAGCCCAGGTCATCACAGACACAACCTC
TTTAGTTAGGATATGTGTGCATCTCTCCCTTTGTGGACCCTATTATTGAG
TGGGATCTATTGGGCATTTTTGTTTTGGTTCCAACTTTTGTTCCCTGCAA
ATTTTTGTTAACCTCATAGTTGCTGTTGCAGTGGCTGACTGGGGGTGTTC
TACTTTCACGAGACAGGGAATTTGTTGTACTCTACAGGGGAAAAGATTTT
CTTCCGGCTAAAGTTTCTGAGGCAATCGAACAGCGAAGGCACAGAATTCA
AGGAGTGAAAAATAGCTGGGATAATAATTCATTAGCTATGGATGTGCAAA
GTCACAAACCTCGGACAGTTTATGTTGATGTGAAAACTGAAAGTGGTGTG
ATTGACAGTAATCCACTAGTCCCTACTATTGAAGCTGAGAATTATCTCAG
GGACGAAAAAAGGAAAGTTTTTTCTGAAGAAAGGAGGCTAAAGTTTGTTA
GAGAAGCTGTTATGAGAACCAAGTCAAAGCTGTCGCTGGTATGCATTTAT
ACAGATGATAAACTAGATAAATTTTTGCAGCTCTTATTTGCATTTAAAGT
TTCATGTGCTGGTAGTCAACTGTAGCAGAGACATTTTGCCATGTCTACAG
TTATGGTTATATTCTTTACAATTATGGTTCTGTGACATGCTGCTTATGAT
TCAGGCTTTAGCAAAGAAATCCAGGGCTGAGACTCTTCTAACAGAGCTGG
AAAAAGAAGAAATCCTACAACCAAGCGAAATAGATAAAGAAGGCATTAGT
GAAGAAGAAAGATATATGCTGAGAAAAGTTGGCTTGAAGATGAAGCCTTT
TCTTTTATTAGGTGAGTTGGTGCATAAATGATGGTAAAATGCGGAAGGAA
GAAGACTTGATTGATCAAAATTTTAGTCCAATATAGTAAAAAGGCCTGAA
AGAAGCCCTATATTATGATGCTCAGGTAGGCGTGGCGTGTTTGATGGAAC
TGTTGAAAACATGCATCTTCACTGGAAATACAGGGAACTCGTGAAAATAA
TTTGTGGTGAGAGAAGCATCGATGAAGTTCATGCGAGAGCACGGACATTA
GAGGCAGAAAGTGGTGGAATTTTAATTGCAGTGGAGAGAATCAGCAAGGG
CTTTGCAATCATTGTATACCGTGGAAAGAACTACAAGCGCCCTGCATCAT
TAAGGCCTCAAACACTCTTAAATAAACGAGAAGCGATGAAACGATCTATT
GAGGCTCAGCGTCGTGAGGTAAATAATTAGCACTATCTTTGTTTATATTT
TCAGATAATTATTATATTGGACATGAATAAATGGACGGGTAAGTTTCTTT
GATTGTATTTGCTAGGAAGAATATTACTGTGTGAATTTGATTTAAGGAGT
AAGTTTTTATGCTAGAAAGCATATGTTGTAAATATTTCACTTTTGCTTAT
TATGTTCTGCAGCTTTGTCTTATATTCCTGCTTAATACTTATGTTTTGTT
TATTCAAGTTTTATTTTACTTGATGCTTTTAGCATTAAATAATGATACTC
AGATACTCAGATACTGATTCCGCAGCACATTTCTTGTACACGTACCCTCA
TTTTAATTTACTTCTGCCTGTACCCTGATTTCCATTACACCAATGTATAA
ACTATAAACACTTGCAGTTGCAGGTAATATGATTTAATGTAAGAAAGCTG
TAATGTTAGTCAAACTGGTAGTTGATATAATGTAAGAATATTTGGATGAT
TTTTGACTATATAGAAAATTTTAAATATTTTATATTTGCCATATCCCCCC
ACCCGAATTCTCATATTTTTAAATTTCCCATATTCCCGTATTCCCATACC
GCTAACCCGCCCTCATGCTTCATAGGTTTTTTTGATAATTTGTTGTGACA
CTATAACCTCCATAATTAATACTGGGAAAATAATCCTGTGCATGTTATAA
TTATAATTTTTAAAATCACAGCTATAGACTTAAAAGTTGCTTGGATAGAA
TATGTTTAGTTCTTCGTATAAGATTTGCATGTAAGTGACGTTTTAACAGT
TTAAGACTTTTTTGTTAAATTTTATAGTTACCTTTAAAATGTACTCTCTC
TGTCCACTCATTTCTTTACAGTTTTTTCACTGTTTCGCATGCATTTTAAG
GTGTATATAAAATATAGTTTTATAACTTATTTTTAAAATATTCTTATTTG
AATAAAAATATTAACATAAATTTTTTATTTAGAAGAAAAGAAAATTTAAA
ATAGTTTGTGCTATACTTTATAGGAGTCTCAAAATATTTTCATATCTGAC
ATATACCCCTCCACCCGAATTCTCATATTTTTAAGTTTCCTGAATTCCCG
TATCAGCGTACCGCGCACCCACACTCATGCTTCATAGGTGTTTTTGATAA
TTTGTTGAGACACTATAACCTCCATAATTAATACCAGGAAAATAGTCTTG
TGCATGTTATAAATTAATAATTTTAAAAATTATAGCTATATGCTTAAAAG
TTGCTTGGATAGATATGTTTAGTTCTTTGTATAAGATTTGCATGTAAGTG
ACGTTTTAACAGTTTTCGACTTTTGTGTTAAATTTCATAGTTCCCTGTAA
AATGTACTCCCTCCATATCACTTATTTCTTTAGAGTTGTTTTTCACTGTT
TCACATGCATTTTAAGGTGTATATAAATTATAGTTTCAGAACTTATTTTT
AAAATATTCTTTTTTTGAATAAAAATATTAACATTAAATTTTTATACAGA
AGAAAAAAAATTAGTAATAGTTTGTTCTATTCTTTAGGAGCCTTAAAATG
CGTGTCAAATCCTCTATCCCAAATGTAAACAATTTAAATCGTTAAATTGG
TTGACTGAGGGAGTAAATGCATATACAATTGGTTGACTAGGCTTGAGTTT
TATATAATTAGCCAATACGTTGAAATCATTTTAGTGCTCATTGCTCAATT
TGATTAATACCTTTTATTAATAAAGAAAATCATATAATGATCTATTCAGA
AGAAATTAAGTCATTAAGTTTGTTAAATATGATATACCAGTAATTTATAA
TGCTTTCTAATAAAATAAAATTCATATTCATCGTGTTGAATTGTGACAAC
ACTTTCTAAATTAATGAATAATGAATATACAGATTAATAATACCTCTAAA
TAATAATGGAAGATCATAAATCCAACTGTACTAATATGTAAGGGTTCCAC
TACATGTGTGCATTTTCATTGTTAACTTTTTTTTTTTTATAATTTTAATA
AATGATCTTAATGCAATCTTTATTAGTTTCTAGTATTGTAAACCTCTATT
TTTGGATATTTCTAATCTCTGTATTGCAGTCTTTGAAGCTTCATGTTTTG
AAGCTTGACAGAGATGTAGATGAATTGCAGCATAAATTGGTGGGTTTTGC
TACATATCTGTCTTCTTAATTCATATTATTATAAGTACTTTCGTAAATTA
TGTTGATAGTATTTAAGCCAACTTGTTTTCATCCAGGCTAGAGACGAACA
GAGAATTAATATGCAATTGGCCAAAGATTTGACCCTTCAGACTGTGAGTT
GTTACCCTCTTGACTGGTTCATCTATGCCTTTCTCTATTGAGCTTTATCT
GTAGAAGTGGGTCAACTAGTTTCACTTTCTGATTCAGGGGACAGAGGATA
AATTGGATCAGAGGCATTCGGAAAAGATTGAAAAGTTTTATGCTGCACCT
CAAAATTGTTCACCAAATGCTGCCTGTCACCAGGAAAATGTAGAGGTAAG
GAGATGTTTACAAATATAATTTTGGAGGAAGGAGAATAGCATTTGCTTAT
AAGATAAAAAAAGTTAACATTAGTAAGAGGAAAACAAAATCCCAGCAAAT
GCCAATTTTTTTTTTTCTAATGTGTCATTTTTCTTAATGTCAAGACTTCA
CGGCAGACCAAGTCCCTGTAAAGTAATATTTCCATGAAAACATAAGGCTA
TATATATCAAGTATTAATTAATAAATATGATCATGGCAGAAACGGCGGTG
AAGCTGCTTTAATTTTTTATTTTTTTTTAAAGGTCTAGGCCATTTAGCAG
TTCTCTTTTTTCTGGAGATGCATTTAGAAATACTTTTGTATGTGTGTTCC
TTTGTTATTGTGCATTTATATCTTTTCTAACTGATTTTTGTTTTCTTCGT
CATTAAGTATGAGTCTGATTATTGGCCCCATAATCTGAAGGTTAAAGATA
ATGATGGAGCTAAATTAACTTCTATCAACACAAATGATTGTGTTGACAGC
TCAAGGCAAGATCTGCAAGCCTCTCCAGAAGACATGTTGACAGGATTATC
CACAGAGGATGATGTGAAGGATGGGGACAAAATTATCATAAACGGCTCTG
AGCCTTCGCCCGTAATAGTACTTGAAAAAACTGATAGATTGAAAAACATG
AATGGTGAAGTTGTACATGCCGAGTCCGTTGTTGCAGCCAGTCATACTGA
TAGGGTATCAAACTAAACTATTCTGTGTGTTTAGTTTGTGTGTACGTATT
TGTATATGAGAAAACGCCCCATATACCACAATTTTCCACAACTAGTGCCC
AAAATAACAGTTGAGAGAAATGGCCCAATATACCATTTATTAACCCCGGA
TAATTCAGCGTTTTGATTTTTGGAAGAAAACTCTATATCGTGTTGCGGTT
AGGTCAGAAAATCACTACAAAATGTAACATGATATGGCGTTTTAGAAGTG
AAACGCTACATGAAATAGCGTTTAGGGTCTCAAAACGCTAGATCGTGTAG
TGTGAAGAAGGGGAAGAGGATAAATGCCGCACGATCTAGCGTTTTGGATT
GCAAGTGGTAGGTCGGGGCCATCTTCTCAGGCAGGCGTATTTTGGGCCTT
TTTTTTTGAAAATTGTGGCAGTGAGGGCCACACCCTTTATATATCTAGTT
AACAACTTGTTGAACGTCGGTGTTTTTAATACAGGGTCACTTTTCTGACA
TCGGAAATACTGGGTCTCTGCGGGAATCCTCTTTTAATTCATCGAGTAAA
GTATTAGGTCCTAAAGGTTTGGAAGATTTTTCAGAAGAGGTACCGTTTAA
AGCTGGACGCCTGTCTAACAGGGAAAGGCTTCTTCTGCGAAAGCAAGCCC
TTGGAGTTAAAAAACGCCCAGTTCTTGCTGTTGGTAATAATCCACCTTTT
TAGAAATGAGTAGGTTGTGTATCTTATAGTAGTTTGCAGTATCTCTCATA
TTTAAAGTGGTACTGACCATTGTCTCCGACTTGACGTGCTTAATTAAGAT
TAAGCAGGTTAGCTTCGCCCTTGTGTGTACATATCATGTTTGCTACATAC
ATAATACACCCGTGATTAATATTTTATACGAATTAATATTCTTCCACTCA
TTTGGCTTTTAGATGATTATTTCAGCATTTTTAACTTGGTAGTAGTTTGG
ATCAACTTAACTAAAAAGAAATAAAGATAATGCTTAAAATTCATTTCAGC
TTTTCAGGCACCATTGTTGGATTTTTCTATATGTGCTAGTGATAATATTC
TTTTCCTCCTTGCCAAGTTGATTCTGCTGTCTCTAATTTAGAGTTTGATA
CAACATGATGAAAGCTCATTATTATTGGTGGTTGTGTTGATTTCCTTATT
TTTTTAATAGGAAAGAGCAATATTGTCTCCGGGGTTGCTAAAACAATCAA
GACTCACTTTCAGAAGCATCCTCTTGCAGTAGTTAATATTAAAGGCCGAG
CGAAAGGGACTTCAATCCAGGAGGTGGTGCTGGAACTGGAGGTTTGCATA
TTGTATAACCCTTTGTTTTCTTTTGCACGTGCAGCTCTGAGCAATCAGGT
TAAAAGTATAGATTTGGCTCTATATTTCTTGCAGCGAGCCACAGGTGCGG
TTCTAGTTTCTCAGGAACCCAGTAAGATCATACTCCATAGGGGTTGGGGA
GCGGGAGATAAGCATAGGCCTGGCCAGAGCATGGAAAATAAAACAATAGA
GTCTGGGAGTACTCCAACAGGCCAAGAGAATAAAGTAAAAACCGTCATCT
CTCCTGAGCTCATTACAGCAATCAAACTTGAATGTGGATTAGAATTCAGC
AGAGGTGAAAAGACTGTTAGATAG

Sequence Length:

10124

Sequence Checksum:

cfacee832e07daed405e529ebff160ad

View location in JBrowse:

DCARv2_Chr1:15200913..15211036-

Cds:

>DCAR_001431cds ATGTTTGTGCTCTCCAACTACAATAATCAAAACAAGCCACGCGCTTCCCT CAACACTACCTCAGCTCCTCTACTAGCTCACTCCGCTATCCAGAGAATCG CCGACAAGCTTCGCACTCTAGGTTTCGATGATAACATTAAGAATGATACT ACAGAGAGAAATAAAATCAACGATTCAGCTTCTCCCGGACAAATCTTCCT TCCTTTACCCACTCATTTACCTAAGTACCGCGTTGGCCACACATTCGATC CCAGCTGGAGCACGCCGGAGAATCCCGTGCCGCAGCCCGGGACGGGGACT GCTATTCGGCGCTATCATCAATTGCGGAATGACTTGCTTCTTTCCAAACA GAAAAATGATCAATCGCTGAATAATGATGATGATAATAGTAATTGTGCGC CTACTTTGGCTGAATTGACCTTGTCTTCCGAGGAGCTGAGACGGTTAAGG AGTGTTGGTATTAAGTTGAAGCAGAGACTCAAGGTTGGGAAGGCAGGGGT TACGGAAGGGATTGTTAATGGGATTCATCAGAGGTGGAGGCATACGGAAC TTGTCAAGATTAAATGTGATGATATTTCTAGGCTGAACATGAAGAGAACT CATGACTTGTTGGAGAGAAAAACAGGAGGATTGGTTATTTGGAGGTCTGG GAGTAATATGATAATTTACAGGGGAGCAGATTACAAGTATCCTTACTTCC TTAATGAAGATAACGATTCAAATAAACTTACCTTACGGTTTAATGATGGG ATAGATGGTGAAAATGAGATCTGCTCATCCCATATTGGGGGTGTCAGATC TGCAGTGAGTCCCTTGTCTAACAAAACTGTGCAAGCACCATTGATACAAG GTGTAGGTTCTCCAAATGTAGTACGATTTCAACTGCCTGGGGAGTTGCAG CTTTTGGAAGAATATGACCATCTGTTGGATGGACTTGGTCCACGGTTCAC GGATTGGTGGGGTTATGATCCCCTACCTGTTGATGCGGATCTTCTGCCAG CTGTTGTTTCCGGATACCGAAAACCTTTCCGCCTTCTTCCATATGGAGTT AAACCTATACTAACAAATGATGAAATGACCGCATTAAAAAGACTGGGCCG GCCTTTACCATGCCATTTTGCACTAGGCAGAAATAGGAAACTTCAAGGTT TGGCGGCTTCTATCATAAAGCTTTGGGAAAGTTGCGAGATAGCAAAAATT GCAGTCAAGAGAGGAGTCCAGAATACCAACACTGAATTAATAGCTAAAGA GTTAAAGTGGCTGACTGGGGGTGTTCTACTTTCACGAGACAGGGAATTTG TTGTACTCTACAGGGGAAAAGATTTTCTTCCGGCTAAAGTTTCTGAGGCA ATCGAACAGCGAAGGCACAGAATTCAAGGAGTGAAAAATAGCTGGGATAA TAATTCATTAGCTATGGATGTGCAAAGTCACAAACCTCGGACAGTTTATG TTGATGTGAAAACTGAAAGTGGTGTGATTGACAGTAATCCACTAGTCCCT ACTATTGAAGCTGAGAATTATCTCAGGGACGAAAAAAGGAAAGTTTTTTC TGAAGAAAGGAGGCTAAAGTTTGTTAGAGAAGCTGTTATGAGAACCAAGT CAAAGCTGTCGCTGGCTTTAGCAAAGAAATCCAGGGCTGAGACTCTTCTA ACAGAGCTGGAAAAAGAAGAAATCCTACAACCAAGCGAAATAGATAAAGA AGGCATTAGTGAAGAAGAAAGATATATGCTGAGAAAAGTTGGCTTGAAGA TGAAGCCTTTTCTTTTATTAGGTAGGCGTGGCGTGTTTGATGGAACTGTT GAAAACATGCATCTTCACTGGAAATACAGGGAACTCGTGAAAATAATTTG TGGTGAGAGAAGCATCGATGAAGTTCATGCGAGAGCACGGACATTAGAGG CAGAAAGTGGTGGAATTTTAATTGCAGTGGAGAGAATCAGCAAGGGCTTT GCAATCATTGTATACCGTGGAAAGAACTACAAGCGCCCTGCATCATTAAG GCCTCAAACACTCTTAAATAAACGAGAAGCGATGAAACGATCTATTGAGG CTCAGCGTCGTGAGTCTTTGAAGCTTCATGTTTTGAAGCTTGACAGAGAT GTAGATGAATTGCAGCATAAATTGGCTAGAGACGAACAGAGAATTAATAT GCAATTGGCCAAAGATTTGACCCTTCAGACTGGGACAGAGGATAAATTGG ATCAGAGGCATTCGGAAAAGATTGAAAAGTTTTATGCTGCACCTCAAAAT TGTTCACCAAATGCTGCCTGTCACCAGGAAAATGTAGAGTATGAGTCTGA TTATTGGCCCCATAATCTGAAGGTTAAAGATAATGATGGAGCTAAATTAA CTTCTATCAACACAAATGATTGTGTTGACAGCTCAAGGCAAGATCTGCAA GCCTCTCCAGAAGACATGTTGACAGGATTATCCACAGAGGATGATGTGAA GGATGGGGACAAAATTATCATAAACGGCTCTGAGCCTTCGCCCGTAATAG TACTTGAAAAAACTGATAGATTGAAAAACATGAATGGTGAAGTTGTACAT GCCGAGTCCGTTGTTGCAGCCAGTCATACTGATAGGGGTCACTTTTCTGA CATCGGAAATACTGGGTCTCTGCGGGAATCCTCTTTTAATTCATCGAGTA AAGTATTAGGTCCTAAAGGTTTGGAAGATTTTTCAGAAGAGGTACCGTTT AAAGCTGGACGCCTGTCTAACAGGGAAAGGCTTCTTCTGCGAAAGCAAGC CCTTGGAGTTAAAAAACGCCCAGTTCTTGCTGTTGGAAAGAGCAATATTG TCTCCGGGGTTGCTAAAACAATCAAGACTCACTTTCAGAAGCATCCTCTT GCAGTAGTTAATATTAAAGGCCGAGCGAAAGGGACTTCAATCCAGGAGGT GGTGCTGGAACTGGAGCGAGCCACAGGTGCGGTTCTAGTTTCTCAGGAAC CCAGTAAGATCATACTCCATAGGGGTTGGGGAGCGGGAGATAAGCATAGG CCTGGCCAGAGCATGGAAAATAAAACAATAGAGTCTGGGAGTACTCCAAC AGGCCAAGAGAATAAAGTAAAAACCGTCATCTCTCCTGAGCTCATTACAG CAATCAAACTTGAATGTGGATTAGAATTCAGCAGAGGTGAAAAGACTGTT AGATAG

Pep:

>DCAR_001431pep MFVLSNYNNQNKPRASLNTTSAPLLAHSAIQRIADKLRTLGFDDNIKNDT TERNKINDSASPGQIFLPLPTHLPKYRVGHTFDPSWSTPENPVPQPGTGT AIRRYHQLRNDLLLSKQKNDQSLNNDDDNSNCAPTLAELTLSSEELRRLR SVGIKLKQRLKVGKAGVTEGIVNGIHQRWRHTELVKIKCDDISRLNMKRT HDLLERKTGGLVIWRSGSNMIIYRGADYKYPYFLNEDNDSNKLTLRFNDG IDGENEICSSHIGGVRSAVSPLSNKTVQAPLIQGVGSPNVVRFQLPGELQ LLEEYDHLLDGLGPRFTDWWGYDPLPVDADLLPAVVSGYRKPFRLLPYGV KPILTNDEMTALKRLGRPLPCHFALGRNRKLQGLAASIIKLWESCEIAKI AVKRGVQNTNTELIAKELKWLTGGVLLSRDREFVVLYRGKDFLPAKVSEA IEQRRHRIQGVKNSWDNNSLAMDVQSHKPRTVYVDVKTESGVIDSNPLVP TIEAENYLRDEKRKVFSEERRLKFVREAVMRTKSKLSLALAKKSRAETLL TELEKEEILQPSEIDKEGISEEERYMLRKVGLKMKPFLLLGRRGVFDGTV ENMHLHWKYRELVKIICGERSIDEVHARARTLEAESGGILIAVERISKGF AIIVYRGKNYKRPASLRPQTLLNKREAMKRSIEAQRRESLKLHVLKLDRD VDELQHKLARDEQRINMQLAKDLTLQTGTEDKLDQRHSEKIEKFYAAPQN CSPNAACHQENVEYESDYWPHNLKVKDNDGAKLTSINTNDCVDSSRQDLQ ASPEDMLTGLSTEDDVKDGDKIIINGSEPSPVIVLEKTDRLKNMNGEVVH AESVVAASHTDRGHFSDIGNTGSLRESSFNSSSKVLGPKGLEDFSEEVPF KAGRLSNRERLLLRKQALGVKKRPVLAVGKSNIVSGVAKTIKTHFQKHPL AVVNIKGRAKGTSIQEVVLELERATGAVLVSQEPSKIILHRGWGAGDKHR PGQSMENKTIESGSTPTGQENKVKTVISPELITAIKLECGLEFSRGEKTV R*