DCAR_010401 | CarrotOmics

Resource Type:

Gene

Organism:

Daucus carota subspecies sativus

Name:

DCAR_010401

Identifier:

DCAR_010401.gene

Locus Tag:

DCAR_010401

Publication:

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
Osuna-Cruz CM, Paytuvi-Gallart A, Di Donato A, Sundesha V, Andolfo G, Aiese Cigliano R, Sanseverino W, Ercolano MR. PRGdb 3.0: a comprehensive platform for prediction and analysis of plant disease resistance genes.. Nucleic acids research. 2018 01 04; 46(D1):D1197-D1201.

Cross Reference:


PRGdb	putative/2174298

Relationship:

There are 2 relationships.
Relationships
The mRNA, DCAR_010401, is a part of gene, DCAR_010401.
The genetic_marker, MK008149 3_22457264, is located in gene, DCAR_010401.

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.

Transcripts:


Transcript Name	Identifier	Type	Location
DCAR_010401	DCAR_010401.mRNA	mRNA	DCARv2_Chr3:22447559..22457813

Sequence:

ATGTGGAACTCGTCGGAGAGTGTGTCGGTGAGGTCGGCGTCGTTCAGGGA
GGCGGCGGACGACGAGGAGGCGTTGCAGTGGGCGGCGTTGGAGCGGTTGC
CGACGTATAATCGTGTACGGAAGGGAGTGTTTAAGAACATTGTGGGCCAG
CTTGTGGAGATTGATGTGCAGAAGCTTCAGGTTGAGGAACGGAAAGTTGT
GTTGAATCGGTTGGTGGAGTCGGTTGAGGATGATTGGGAGAGGTTTTTTC
ACCGGATTCGACACCGGTTTGATAAGTAATTTACACTCCCGTGCTCAAAT
TTGTCGATTTTTAGTCTGGTTTCTGATAGCGATTGTTAAAATTTGTTTAA
ATGAGTTTACGGGGGCGGGAGTACTTGAACCCGAGACCCTCTGATACCAT
GTCAAGTAACCGGCCTGGAGGATGACCAAACATGATCTTATATTATTCTA
CGATTTATTTGTTGTTACTGATTTTTGAAGTTTTTGGATTTTTGATGTTT
CATTGTTTCCAGCAATGGCTGAAGTTCAAAATTTTGTGATACGATTAATA
ATTTTTTAAATTAATTTTCTCAAGTTTAAATGAGGTTAATTAGTACTGTG
TACCGGTGATTTTGAATATTATGGGTGTTAAAAGTTTGATTGATTACAGT
AATTGAATATTTTTTGGTAACCTTTGTACAATTTTGCAGAGTTGATTTGC
AGTTTCCGAAAATTGAAGTTCGATTCCAGAATCTGAATGTTTACACATAT
GTGCATGTTGGGAGTCGAGCACTGCCTACTATTACCAACTTTATGTTTAA
CATGACCGAGGTAAGGTTTATGCAGATTGTGCTGGGATGGATATATATAT
ATATATATTTAGTATTGATTAACTCTGGCTTGATTTGATGTGTTTTGGTT
TTTTGTTGTTATCAAGGCTCTATTACGACAGTTAAGGATTTACCGGCCTA
AGAGAAGAAAATTGTCGATATTGGATAATATGAGTGGAATAATTAGACCT
TCTAGGTACTTATTTCTTCTACTTTACATAATTTTTGGCAGCTGGTTGGG
TTTCAATTGCAGTTTTAGTCTTTGATTGTGTATTTTTCTATGGCAATCCT
TAATCACTTATGTGATAATTAATGATGTTTATTTGAAGATTGACACTGCT
TTTGGGTCCTCCAAGTTCTGGAAAGACGACACTGCTGCTGGCCCTTGCTG
GTCGCCTTGGACAAGATTTGCAGGTTTCACGTTTGTTCTTAATGTGTAAT
TTTTGGTTCATTTAACAGGACAATTGGAAGTGACATTTTTTTTATTAGGT
CAGCAGTAGTCTTATTAAATTTTTTTGTTCTCTAATACCTTAATTTCTTC
GAAGATGTCAGGGAATATTACTTACAACGGACATAGTTTAAAAGAGTTTG
TTCCACAGAGGACATCTGCCTACGTTAGTCAACAAGATTGGCATGTGCCA
GAGATGACTGTGAGAGAAACACTTGATTTCTCAGCACGTTGTCAGGGTGT
TGGATGTAAATATGGTAAGTCATGACCTCTGGGAGATTGTACATGTGTGT
TGGTCACCAAGATGATAAACCATAAGTTTTGCAACAGATATGCTTGAGGA
GCTTGCAAGAAGAGAGAAGAGGGCTAGTATCAAACCTGATGAAGATCTTG
ATATATTTATGAAGGTGTCGTAGCTGCCTTAATCGCCTTAAGTAATTCAG
CAAACCTCTGATCTTCTGTTAATTTTGTACCATAAACTTTTCAACTGTCA
TTACAGGCATCAGCATTAGGAGGACAGGAGACGAGTCTAATTGTGGAGTA
CATATTAAAGGTATGTTCTTTGTGGACTTACTTTCACAGTATTTCTGATG
CAACTGGTGTTCCAAATTCTACTTTTTTACTGTGTTCTGAATTTCGATCG
CTACGGGACTTTTTGTTCACCGACTTGGAATCGTTTTATGCTTTTTCTTG
CACTGCCTGCTGCTGCAGTTATTATTACTGAACATACAGGTTGCAGGAGT
AAGTTCAATGATGTGTGATTAGAGAACTATGCGTAAAATGCAATAAAATT
TGGATGGGGAATCATTACATATATTTGAACGGGTTTTGAAAACTCGATGT
TCTTATTTATTTGAATATGACCATTAAGCATTGGGGGGATGTAGAACGGA
GGTTTTTTATTCAGCAGTTTATATGGATAAGTTGGCCTATAATATGAAGG
TTTTCTATGGAAACTGAAAAAAAAAATCTTTGGAAAGAGAAGTTGAAGAT
ACCAGTGCCTAATTTTTCGAGTAAGTCATACAATATACATCTATTCGGTT
GGATGTTGGACAGCTGAATGGTTGAAGAAGCTTTAAAAGGTTTCCAAAAT
GTCTATAGCTTATGCATCTTGTCAAGTAGACCTGTTTTTACATCATATGT
AGTAAAAGAAAGGTATGAGATGCTAACGGCATTACCAACTACTAAGAAAA
GCTAGGTGAGTAACAGATTGATTTCTGGGAATACAAGATTGCACAAAGTC
ACGAACTATGGGAAGTAATAGGATGATCTAGGTAAGATCAAACTATTCAT
ATCCATTACAAATGATCTACTTAAGCATGCCAAAGAGTTTTGACTTTTGG
TGCAGTTATAACACCGTGCAATTGTGCACTAACCAGTACTAGTGATGTAT
TACATGATTGAAGCAGCTCCCACAGAACTCTCTCATTATCACCCATGAGG
GCTTGCCACAAAATTATATGTGTGTTTACATTCATGAATCAGTGGCAAAT
ATTATTTGTTGAAAAGATCCATAATGAAGGAACATGCACTTCTCTGTGTT
CAGTTTTCTTCTTCATAATATGTTCAAAGTTTTATTTCACTCTGCAGTAT
GTACTGTTTTTAATTAAACAAAGAAATGCATTGCAAAGTTCAACCCCTAA
ATTATGATAATAATAAGAAGTTGCATATGATAACTGATATCCGTCCTAGG
TTACTGCACTTTATCCAGTGTTAATTGTTGTTAGAATATAATAATCCTGG
TAAAAATCCTTTTCCTAACAGCTTGAGGTTTCAGGAGAACTGGTACTTAA
CAATTGTGTACGAGAAAAAGGCCGTACATATGCGTGTCTATATAAGGAAT
TAGTGTAATTTATATGAACTAGTTGAATTTTGCTAATGATAAAGTGAGGT
CATTGCATTGGAATCTACTGCTTTTGAAAGCCTTGGATTTTAAATTTTTA
CAGCTCTCTGAAGTTCTAAAATTTATATGACAAAGATTTTAGGGTTGGAT
CTATGTGCTGACACTTTGGTTGGAGATGAAATGCTCAAAGGAATCTCTGG
AGGACAAAAAAAGCGGCTTACTACAGGTACATTCATTATCATTGATGCTT
CTTCATTTATAATGCTTATTATATATTGTTCTTTTTTATGCTTACTCAAG
TCATGTGTATGCCAGGTGAATTATTAGCGGGTCCATCAAGAGTCCTGTTC
ATGGATGAGATATCAAATGGGCTTGACAGTTCAACTACTTACCAAATCAT
CAAGTATCTCAGGCATTCCAGTCATGCACTTGATGGGACCACTGTGATTT
CTTTGCTTCAACCTGCTCCTGAGACGTATGAGTTGTTTGATGATATAATT
CTTCTCTCCGAGGGTCAAATTGTGTATCAGGGGCCTCGTGATTCTGCCCT
TGGATTCTTTGCATCAATGGGATTTCAATGCCCTGAACGAAAGAATGCAG
CGGACTTCCTTCAAGAAGTAAGTAATATCATAGTTTCAAATGTGTTTTTA
GTTTGTCACTCAGTACCTTATATATAAAGACGACATGGCCCAGGTTATAT
CGAAAAAGGACCAAGAGCAGTATTGGGTTGTTCATGATCGCCCCTATCAT
TATATATCCGTGCTGAAGTTTGCTGAAGCCTTTCGTTCATATCAATTGGG
AAAGAATTTAGGCGAAGAACTAGACATTCCATTTGATAGACGTTATAATC
ATCCTGCAGCACTGTCAACCTCTCAGTACGGAATTTCAAGGATTGAGCTT
CTTAAGACGAGCTTTGATTGGCAATTGCTACTAATGAAACGAAACTCGTT
TATTTATGTTTTCAAGTTCATTCAGGTGATTACTATTTCTGTTATCTGTA
CTTAAATTGATATTAAAGAGTCAAATCCTTTGTGAGTCTCTTTCACCTGT
GGTTATTATTTCCTATAAGCATAAGCCTGATGGAAAAACATATTTATGCA
TGTATCTCACTCACTATATTGCTGCATTACAGCTCTTCTTTGTTGCTTTA
ATTACCATGAGTGTTTTCTTTCGGACAACTCTTCACCATAATACAATTGA
TGATGCTGGGCTATATCTCGGGGAACTTTACTTTTCTATGGTCATTATTC
TTTTCAATGGATTTACGGAGGTTCCAATGTTGGTAGCGAAGCTGCCGGTG
CTTTATAAGCATAGAGATTTGCACTTCTACCCAGCCTGGATTTATACACT
TCCTTCCTGGGTCTTAAGCATTCCAATATCACTCATAGAATCTGGTTTTT
GGGTCATGATCACGTATTACGTGGTTGGATTTGATCCTAATATTGTTAGG
TAAGATTCCTCTAAAAGTTGCGTTGTTTATTATGATTCTCTGAGCTGTAT
ATCCGAAGTCTGTAACCCTAATTATCAACCTGCAGCTTTTTTCGACAATT
CCTTTTGTATTTCTTCCTACATCAAATGTCAATTTCTCTTTTTCGTCTAA
TGGGAGCCTTGGGACGAAATATGATAGTTGCTAATACTTTTGGATCTTTT
GCCATGTTAATTGTAATGGCTCTTGGTGGATATGTGATCTCGAGAGGTAA
AGGGAAGTAATATATATTATTATCTTTCACTTAATCATGTAAATTTACTA
ATTGTTCTGATATCACGGCAATAGCTAGCATCCCCAAATGGTGGATCTGG
GGCTTCTGGATTTCTCCTCTTATGTATGGTCAAGCTGCATCTTCCGTCAA
TGAATTTCTTGGACATTCATGGGATAAGGTAATATATTTGTATGAACAAC
TGGTCAATTCTTGTTATTGAAAAGTTGAAAGTCAACCTTGAATCCATCTG
CGAAGAACATTATCTATTGTGAAAATAAACAATCCTATCTAAAAAGTAAC
AGTATGAGTTAATTGCAAAATACATCCCTTTGGTTTGGCTTTATTACCTA
AACTTTAGGTAATTGCACAGTGCATCCCTCAATGTTTAACAGTTTAAGAG
TGCCACATGTTGAACCCTTTTGGCCATTTTCATCTATTTTGACCTATCAC
TGTTTTCAGTTAACAAGGTATAATAGATTGAAGAACCTATAATATGTCAT
TCTAGTTAATTCCTAAGTCTATTTCAAATGCGGCGCACAAACATGTTAAG
GGATGCATTTTGCAATTTTCTAAAGTTTAGGTAACAAAGGGTAATGTAGG
CTTTTAGGCTTAGTTGCTTTCTATTTATAGGAGCTACAGCGGACAATAAA
AGATCAGATAGTAACCAAAAGGTTTTTTCAATGACTCCACAACCACTCTA
GTCCAAAGAAGGTGGAATTTAAACCTTGACCATTGCTGAGGTAGGTCATA
GGTGTATATGGAAACTGTCAAGTTCTTACTTGAAGTGAAGAGCTGATGCA
CAGTTGCCTGTTACAGGTGCTAACTGATGGTCAATTTCTGAATCTAGCTG
CACAGAACAATATAACAGTCCTACTTAGAAAAGAAAGTAAACAATGCTCA
ATATTGAGTTTATGGTAGTTTTTTCTAGATTGTATGCCACCCTTATTCCA
AAGTGTGATTTATTGTGCTGGTAAAAGAATTTAAAGTTAAATTATGGCTT
CAGTGTTATGTTTGGATGCTGATATACCTTATAGCTGCATCAACTAATAA
TGTATGTGTGTAATTAATACATGTAAGGAATAGTATACAAGATGTTGTCA
CACAAATGGAGTTTATGCTTACTATTAGGAGGAGCCATTGCTGCCCAAAA
AAGATTAAGCGCTAAACTAAAAGGATTGTCTTACATGGTCCGACAACCAC
TTCTATCCAGAGAGGGTGGTGTTTAATCCTTAAGCCTGGCTGAAATAGGT
AAGGAAATTGTCAAGGACTTCCTTGAAGTGAAGAGCTGATGCCAAATGAT
TATATCTTCTGATCTCCGACCTTCTTTTGGTGATGTTTAATAAGCCAAAT
CTGCTCTGACTGCTGAGTAACAACATAAATACATTGACCCGAGTCTATAT
ATATGAGTCACATGTTTATGCTATATGGAAAAAAGGTTTGCATCAGTGTT
TCAAATAGTATCAGATCTTTGCTGACTGTTGAATAACAAATGTAACACAT
ATTGACTTAAGTATCTATGGGTTGGCAGCATCTTGGTGTCATTCAGATAC
AAAATGTGCCTAATAATTGAAATTGACATTTGTTTTTATTTTTTTGACAA
GTACATGCTATTTATTTATTTATTGTATCTAGTAGATACTATATTTGTAA
ATGCTGTCATAATGCACAAAGATTAGCCTTGTTCTTGGATTCGACTGCAG
CTATTAATTTGAATTATTATTACCTCAAGGTAGAGCATTATTTTATCTAC
ATGGAATCTCATAACTTGTAACACCCTCATTCATGCAGAAAATTGGGAGC
AATTCTACTATGCGTTTAGGTGACCAATTACTCAAAGCACGTAGTTTGTT
TCGTCAGAGTTATTGGTATTGGATTGGTGTTGCTGCTTTGCTTGGATATA
CACTTCTGTTTAATATCCTTTTCACCTTCTCCCTAACTTACCTCAACCGT
AAGCCTTCCCTCCCTTTTAAATTATGGTTAGAACCTAAAAGTTTTTTGTC
TCCAAATATCAAGAATACACGGAAAGACACATATGAAGTTATTAATGTTC
TGGTAATGTCTGTAGCTTTGGTGAAGCAGCAGGCAGTTGTTTCTGAAGAA
GAGCTCCAAGAAAGAGATAATAGAAAAAAAGGTGTAAGTGAAACTAAAGT
CGTTAATATTCAGCTAAGAGAATATTTGGAGCATTCAGGTTCACTAACTG
GTAGGAAATACTCCATTCTTTTATAGATTCACTCTTTTTGTTTGTTAAAA
GCTGCAATAATCTGTTACAAAATTTTAATTTAAAGTCTTTGGACAGGAAA
AAGTTTTGATCAGAGAGGCATGGTTCTTCCTTTTCAACCACTTTCGATGT
CTTTCAGCAATATTAGTTACTATGTTGATGTACCTTTGGTCTGTAAACTT
CTACATCTCTTAATCTACATTAGTGAGTCGTCTTCAATAAACGCGTCTCA
GTCTAGTTTTGTTACAGGAATTAAAGCAGCAAGGAGTTAGTGAGGAAAGA
TTGCAGCTGTTAGTTGATATCACTGGAGCATTTAGGCCAGGTGTCCTTAC
TGCTTTAGTTGGAGTTAGTGGTGCTGGAAAGACCACCCTCATGGATGTAT
TAGCTGGCAGAAAAACGGGTGGGGTTATTGAAGGGACGATTAAAATATCG
GGTTATCCAAAAAAGCAGGAAACTTTTGCTAGAATATCTGGTTACTGTGA
GCAGAATGACATTCATTCACCATGCCTTACTGTTCATGAATCACTTTTAT
TTTCTGCATGGCTCCGTTTACCATCAGAAGTTGACATTGTTACACAAAAG
GTAAAAAGTTGAGCATGCTTTCCGTTGTATGTTTTAGGTTATAATCTGAT
CAATTAAATTTACCAGGCTTTTGTTGAGGAGGTGATGGAACTTGTAGAGC
TCACTCCATTAAAAGGCGCTTTGGTTGGTCTGCCAGGTGTTGATGGCTTG
TCAACGGAGCAAAGAAAAAGACTAACCATTGCAGTTGAGTTGGTGGCTAA
TCCTTCTATAGTTTTCATGGACGAGCCTACATCAGGACTGGATGCAAGGG
CTGCTGCAATTGTAATGAGGACTGTGAGGAATATCGTAAATACAGGGAGA
ACAATTGTTTGCACAATACATCAACCCAGCATAGACATTTTTGAATCCTT
TGACGAGGTATTTATTTCAGTAATTGCTATAAATATTGACGGGGATTGTG
AAGTACGTGCATTTCTGTGCTATAAAAAACAAGTTGAGGAAACTTATCCC
AGCTCTTAGATCATCTAGTCAAAAATCTCTAGATTTATTAAGAACCAGAT
AAAGAGTATAATAGGACATAGAACACGCACCTGACTCCCTAATTATAGTC
ATTTAGTTCAGCTCAAAATTTCTGCTGCTTAACTTCCTTTTTTTTCCCTT
TTTAGAGTAGTAATATAATGTTAGATATCATAATTGTGAAACCTTACACA
GTAAATAATCATTTTATGATATCTTCCAAATTCAATCCACGATGGCAGCT
TGTATTTATGAAGAGGGGAGGAGAGCTCATATATGCAGGCCCACTTGGCC
CCAGGTCTTACAAACTTGTAGATTATTTGGAGGTTTGCTACTTTTTATAT
TATCTTTCCTTTTTTGTGAATTTACTTGAACACATCTGTATCATTTGACT
TCTTGATATCCTTAAAATATTTATTTTCTACAATTATCTGTCTTGCCTGT
ATCTCTAGGCAATACAGGGAGTACCAAAGATACGACCTGACCAGAATCCT
GCTACATGGATGTTAGAGGTCACTTCATCAATGGAAGAAAATCGTCTTGG
TGTGGACTTTGCAGAGATATACCGAAGATCAAATCTCTATCAGTATGTGC
TGCTTCTGAGAAATGGAATCTGATTTCTACCTTTTATATCTTTTAGTATG
CTAGATATTATTTGTGAACAGAAAAAATTAAGTATAGTTGTACATTTTGC
CTCAGACGTAACAAAGGACTGGTTGAAAGGCTGAACAGATTAAATATCAA
TGCAAAAGAACTGAACTTCCCAACCAAGTATTCGCAGTCAAAAATGGATC
AGTTTCTAGCTTGTCTTTGGAAGCAAAACCTGTGTTATTGGAGAAATCCA
CAATACTCTGCAGTTCGCTTTTTCTACACCGTCATTATTTCACTGATGCT
TGGTACAATCTGTTGGAGATTTGGCTCCAAAAGGTGTTTTTCAGATCTTT
TTTGTTATGTTTTCATCAGCCTTCTCTTGTTCAGTGATTAATATTACAAA
TAACATTGTGGTCATGAATTTCCCGTCTTTTTTGCTTTGTGTGACCATAT
ATAACTTATATAGAAATGTTGTATTTTTTTTCTTTGAAGTGCTAACAGGA
TAGAATTAACTCACAGCGACTGCTTTCTATCAGAATCTATTTTTTTAATT
TAATTAGTGTTTCAAATTTATCTCACATTCAGATTTTCACTCTTTCAAAT
AGGGATAACCAACAGGATATCTTTAATGCCATGGGATCCATGTATGTAGC
AGTCCTGTTTATTGGTGTCACCAATGGAGGTGCTGTTCAACCAGTTGTTT
CTGTCGAAAGATTTGTTTCATACAGAGAGAGAGCTGCAGGGATGTATTCT
GCTCTACCATTTGCACTTGCTCAGGTGCGCTTATGGCATATCATTTCATC
ATTAAAATTGTATCATCGCTGTTTGAAATGTACTTTTTCATGAAATGCTG
TTGATTTGTAGGTTGCCATTGAGTTCCCTTATGTGCTTGGGCAAGCACTC
ATATACAGTACGGTGTTCTACGCAATGGCTTCATTTGAGTGGACTTTTTA
CAAATTTGCATGGTACATCTGTTTTATGTATTTCACTATGCTATACTTCA
CCTTCTATGGAATGATGACGACAGCAGTCACACCGAATCACAATGTAGCT
TCCATCATCGCTGCTCCGTTTTATATGCTTTGGAACCTTTTCAGTGGATT
TATGATACCTCACAAGGTACAAGTAAAAGTACCTGTCTTTCTTAGTTCTT
AAAATTGACATAAAAACAAGTTTACAATATAGCAAGGCATTTTTGGTAGT
CATGAGGCAAGCACAATTCAATATTATATTAATAAATGAATTTTGCGAGT
AATTTAGAAGCTCCATGAAAAATTGAAATATCTGAGTATTATGTACATCA
TCTGAACTTTTTTGTGTCCGCTGTTAAACAGAACATTCCTATTTGGTGGA
GATGGTATTACTGGGCAAACCCTGTCGCTTGGACTCTTTACGGTCTTGTG
GTTTCTCAATATGGTGATAGTGATGTACCTATAAAGCTTTCTGATGGAGT
AACAGTGCTGCCAGCAAAGTTGTTAATCAAGCATGTCTTCGGGTTCAGGC
ATGATTTTCTCGGCATTGCTGGTATCATGGTGGTTGGCTTCTGCGTCTTA
TTCGCCCTTATATTTGCCTATGCAATCAAAACCTTCAACTTTCAGAAGAG
ATGA

Sequence Length:

10254

Sequence Checksum:

85ceefac6d9000f44b19482521e8ab56

View location in JBrowse:

DCARv2_Chr3:22447560..22457813+

Cds:

>DCAR_010401cds ATGTGGAACTCGTCGGAGAGTGTGTCGGTGAGGTCGGCGTCGTTCAGGGA GGCGGCGGACGACGAGGAGGCGTTGCAGTGGGCGGCGTTGGAGCGGTTGC CGACGTATAATCGTGTACGGAAGGGAGTGTTTAAGAACATTGTGGGCCAG CTTGTGGAGATTGATGTGCAGAAGCTTCAGGTTGAGGAACGGAAAGTTGT GTTGAATCGGTTGGTGGAGTCGGTTGAGGATGATTGGGAGAGGTTTTTTC ACCGGATTCGACACCGGTTTGATAAAGTTGATTTGCAGTTTCCGAAAATT GAAGTTCGATTCCAGAATCTGAATGTTTACACATATGTGCATGTTGGGAG TCGAGCACTGCCTACTATTACCAACTTTATGTTTAACATGACCGAGGCTC TATTACGACAGTTAAGGATTTACCGGCCTAAGAGAAGAAAATTGTCGATA TTGGATAATATGAGTGGAATAATTAGACCTTCTAGATTGACACTGCTTTT GGGTCCTCCAAGTTCTGGAAAGACGACACTGCTGCTGGCCCTTGCTGGTC GCCTTGGACAAGATTTGCAGATGTCAGGGAATATTACTTACAACGGACAT AGTTTAAAAGAGTTTGTTCCACAGAGGACATCTGCCTACGTTAGTCAACA AGATTGGCATGTGCCAGAGATGACTGTGAGAGAAACACTTGATTTCTCAG CACGTTGTCAGGGTGTTGGATGTAAATATGATATGCTTGAGGAGCTTGCA AGAAGAGAGAAGAGGGCTAGTATCAAACCTGATGAAGATCTTGATATATT TATGAAGGCATCAGCATTAGGAGGACAGGAGACGAGTCTAATTGTGGAGT ACATATTAAAGATTTTAGGGTTGGATCTATGTGCTGACACTTTGGTTGGA GATGAAATGCTCAAAGGAATCTCTGGAGGACAAAAAAAGCGGCTTACTAC AGGTGAATTATTAGCGGGTCCATCAAGAGTCCTGTTCATGGATGAGATAT CAAATGGGCTTGACAGTTCAACTACTTACCAAATCATCAAGTATCTCAGG CATTCCAGTCATGCACTTGATGGGACCACTGTGATTTCTTTGCTTCAACC TGCTCCTGAGACGTATGAGTTGTTTGATGATATAATTCTTCTCTCCGAGG GTCAAATTGTGTATCAGGGGCCTCGTGATTCTGCCCTTGGATTCTTTGCA TCAATGGGATTTCAATGCCCTGAACGAAAGAATGCAGCGGACTTCCTTCA AGAAGTTATATCGAAAAAGGACCAAGAGCAGTATTGGGTTGTTCATGATC GCCCCTATCATTATATATCCGTGCTGAAGTTTGCTGAAGCCTTTCGTTCA TATCAATTGGGAAAGAATTTAGGCGAAGAACTAGACATTCCATTTGATAG ACGTTATAATCATCCTGCAGCACTGTCAACCTCTCAGTACGGAATTTCAA GGATTGAGCTTCTTAAGACGAGCTTTGATTGGCAATTGCTACTAATGAAA CGAAACTCGTTTATTTATGTTTTCAAGTTCATTCAGCTCTTCTTTGTTGC TTTAATTACCATGAGTGTTTTCTTTCGGACAACTCTTCACCATAATACAA TTGATGATGCTGGGCTATATCTCGGGGAACTTTACTTTTCTATGGTCATT ATTCTTTTCAATGGATTTACGGAGGTTCCAATGTTGGTAGCGAAGCTGCC GGTGCTTTATAAGCATAGAGATTTGCACTTCTACCCAGCCTGGATTTATA CACTTCCTTCCTGGGTCTTAAGCATTCCAATATCACTCATAGAATCTGGT TTTTGGGTCATGATCACGTATTACGTGGTTGGATTTGATCCTAATATTGT TAGCTTTTTTCGACAATTCCTTTTGTATTTCTTCCTACATCAAATGTCAA TTTCTCTTTTTCGTCTAATGGGAGCCTTGGGACGAAATATGATAGTTGCT AATACTTTTGGATCTTTTGCCATGTTAATTGTAATGGCTCTTGGTGGATA TGTGATCTCGAGAGCTAGCATCCCCAAATGGTGGATCTGGGGCTTCTGGA TTTCTCCTCTTATGTATGGTCAAGCTGCATCTTCCGTCAATGAATTTCTT GGACATTCATGGGATAAGAAAATTGGGAGCAATTCTACTATGCGTTTAGG TGACCAATTACTCAAAGCACGTAGTTTGTTTCGTCAGAGTTATTGGTATT GGATTGGTGTTGCTGCTTTGCTTGGATATACACTTCTGTTTAATATCCTT TTCACCTTCTCCCTAACTTACCTCAACCCTTTGGTGAAGCAGCAGGCAGT TGTTTCTGAAGAAGAGCTCCAAGAAAGAGATAATAGAAAAAAAGGTGTAA GTGAAACTAAAGTCGTTAATATTCAGCTAAGAGAATATTTGGAGCATTCA GGTTCACTAACTGGAAAAAGTTTTGATCAGAGAGGCATGGTTCTTCCTTT TCAACCACTTTCGATGTCTTTCAGCAATATTAGTTACTATGTTGATGTAC CTTTGGAATTAAAGCAGCAAGGAGTTAGTGAGGAAAGATTGCAGCTGTTA GTTGATATCACTGGAGCATTTAGGCCAGGTGTCCTTACTGCTTTAGTTGG AGTTAGTGGTGCTGGAAAGACCACCCTCATGGATGTATTAGCTGGCAGAA AAACGGGTGGGGTTATTGAAGGGACGATTAAAATATCGGGTTATCCAAAA AAGCAGGAAACTTTTGCTAGAATATCTGGTTACTGTGAGCAGAATGACAT TCATTCACCATGCCTTACTGTTCATGAATCACTTTTATTTTCTGCATGGC TCCGTTTACCATCAGAAGTTGACATTGTTACACAAAAGGCTTTTGTTGAG GAGGTGATGGAACTTGTAGAGCTCACTCCATTAAAAGGCGCTTTGGTTGG TCTGCCAGGTGTTGATGGCTTGTCAACGGAGCAAAGAAAAAGACTAACCA TTGCAGTTGAGTTGGTGGCTAATCCTTCTATAGTTTTCATGGACGAGCCT ACATCAGGACTGGATGCAAGGGCTGCTGCAATTGTAATGAGGACTGTGAG GAATATCGTAAATACAGGGAGAACAATTGTTTGCACAATACATCAACCCA GCATAGACATTTTTGAATCCTTTGACGAGCTTGTATTTATGAAGAGGGGA GGAGAGCTCATATATGCAGGCCCACTTGGCCCCAGGTCTTACAAACTTGT AGATTATTTGGAGGCAATACAGGGAGTACCAAAGATACGACCTGACCAGA ATCCTGCTACATGGATGTTAGAGGTCACTTCATCAATGGAAGAAAATCGT CTTGGTGTGGACTTTGCAGAGATATACCGAAGATCAAATCTCTATCAACG TAACAAAGGACTGGTTGAAAGGCTGAACAGATTAAATATCAATGCAAAAG AACTGAACTTCCCAACCAAGTATTCGCAGTCAAAAATGGATCAGTTTCTA GCTTGTCTTTGGAAGCAAAACCTGTGTTATTGGAGAAATCCACAATACTC TGCAGTTCGCTTTTTCTACACCGTCATTATTTCACTGATGCTTGGTACAA TCTGTTGGAGATTTGGCTCCAAAAGGGATAACCAACAGGATATCTTTAAT GCCATGGGATCCATGTATGTAGCAGTCCTGTTTATTGGTGTCACCAATGG AGGTGCTGTTCAACCAGTTGTTTCTGTCGAAAGATTTGTTTCATACAGAG AGAGAGCTGCAGGGATGTATTCTGCTCTACCATTTGCACTTGCTCAGGTT GCCATTGAGTTCCCTTATGTGCTTGGGCAAGCACTCATATACAGTACGGT GTTCTACGCAATGGCTTCATTTGAGTGGACTTTTTACAAATTTGCATGGT ACATCTGTTTTATGTATTTCACTATGCTATACTTCACCTTCTATGGAATG ATGACGACAGCAGTCACACCGAATCACAATGTAGCTTCCATCATCGCTGC TCCGTTTTATATGCTTTGGAACCTTTTCAGTGGATTTATGATACCTCACA AGAACATTCCTATTTGGTGGAGATGGTATTACTGGGCAAACCCTGTCGCT TGGACTCTTTACGGTCTTGTGGTTTCTCAATATGGTGATAGTGATGTACC TATAAAGCTTTCTGATGGAGTAACAGTGCTGCCAGCAAAGTTGTTAATCA AGCATGTCTTCGGGTTCAGGCATGATTTTCTCGGCATTGCTGGTATCATG GTGGTTGGCTTCTGCGTCTTATTCGCCCTTATATTTGCCTATGCAATCAA AACCTTCAACTTTCAGAAGAGATGA

Pep:

>DCAR_010401pep MWNSSESVSVRSASFREAADDEEALQWAALERLPTYNRVRKGVFKNIVGQ LVEIDVQKLQVEERKVVLNRLVESVEDDWERFFHRIRHRFDKVDLQFPKI EVRFQNLNVYTYVHVGSRALPTITNFMFNMTEALLRQLRIYRPKRRKLSI LDNMSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGQDLQMSGNITYNGH SLKEFVPQRTSAYVSQQDWHVPEMTVRETLDFSARCQGVGCKYDMLEELA RREKRASIKPDEDLDIFMKASALGGQETSLIVEYILKILGLDLCADTLVG DEMLKGISGGQKKRLTTGELLAGPSRVLFMDEISNGLDSSTTYQIIKYLR HSSHALDGTTVISLLQPAPETYELFDDIILLSEGQIVYQGPRDSALGFFA SMGFQCPERKNAADFLQEVISKKDQEQYWVVHDRPYHYISVLKFAEAFRS YQLGKNLGEELDIPFDRRYNHPAALSTSQYGISRIELLKTSFDWQLLLMK RNSFIYVFKFIQLFFVALITMSVFFRTTLHHNTIDDAGLYLGELYFSMVI ILFNGFTEVPMLVAKLPVLYKHRDLHFYPAWIYTLPSWVLSIPISLIESG FWVMITYYVVGFDPNIVSFFRQFLLYFFLHQMSISLFRLMGALGRNMIVA NTFGSFAMLIVMALGGYVISRASIPKWWIWGFWISPLMYGQAASSVNEFL GHSWDKKIGSNSTMRLGDQLLKARSLFRQSYWYWIGVAALLGYTLLFNIL FTFSLTYLNPLVKQQAVVSEEELQERDNRKKGVSETKVVNIQLREYLEHS GSLTGKSFDQRGMVLPFQPLSMSFSNISYYVDVPLELKQQGVSEERLQLL VDITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGTIKISGYPK KQETFARISGYCEQNDIHSPCLTVHESLLFSAWLRLPSEVDIVTQKAFVE EVMELVELTPLKGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEP TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELVFMKRG GELIYAGPLGPRSYKLVDYLEAIQGVPKIRPDQNPATWMLEVTSSMEENR LGVDFAEIYRRSNLYQRNKGLVERLNRLNINAKELNFPTKYSQSKMDQFL ACLWKQNLCYWRNPQYSAVRFFYTVIISLMLGTICWRFGSKRDNQQDIFN AMGSMYVAVLFIGVTNGGAVQPVVSVERFVSYRERAAGMYSALPFALAQV AIEFPYVLGQALIYSTVFYAMASFEWTFYKFAWYICFMYFTMLYFTFYGM MTTAVTPNHNVASIIAAPFYMLWNLFSGFMIPHKNIPIWWRWYYWANPVA WTLYGLVVSQYGDSDVPIKLSDGVTVLPAKLLIKHVFGFRHDFLGIAGIM VVGFCVLFALIFAYAIKTFNFQKR*