Resource Type:
Genetic Marker
Name:
MK001256 BSSR-099
Identifier:
MK001256_BSSR_099
Organism:
Marker Type:
SSR
Publication:
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
- Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae.. BMC genomics. 2011 Aug 01; 12:386.
Cross Reference:
| NCBI Nuccore |  |
|---|
Relationship:
| Relationships |
|---|
| The genetic_marker, MK001256 BSSR-099, is adjacent to primer, BSSR-99F. |
| The genetic_marker, MK001256 BSSR-099, is adjacent to primer, BSSR-99R. |
| The genetic_marker, MK001256 BSSR-099, is located in gene, LOC108218121. |
| The marker_locus, BSSR-099, is an instance of genetic_marker, MK001256 BSSR-099. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2014 J.Parsons Th. Br1091×HM1F3 | Chr4 | 0 | BSSR-099 | MapViewer |
| 2015 MB Merged | Chr4 | 15.038 | BSSR-099 | MapViewer |
| 2011 B493×QAL QAL | LG04 | 118.9 | BSSR-099 | MapViewer |
| 2014 J.Parsons Th. Fig_4.4 | F3_Chr4 | 0 | BSSR-099 | MapViewer |
| 2014 J.Parsons Th. SFF×HM2 | Chr4 | 43.791 | BSSR-099 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr4 | 15.038 | BSSR-099 | MapViewer |
| 2011 B493×QAL B493 | LG04 | 116.7 | BSSR-099 | MapViewer |
| 2015 SFF×HM2 | Chr4 | 43.791 | BSSR-099 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr4 | 15.038 | BSSR-099 | MapViewer |
Synonyms:
- MK001256
Sequence Coordinates:
DCARv2_Chr4:4923785..4923987+
View location in JBrowse:
Sequence:
CGCCNAGTCTCTNCCATATGATATCGTGCCTGCAAATTCATGTATTATAC
ATGTTAACCCTCTTGATTTTGGTTGAGAGATCCAATTTTGAACTTGAAAA
AGATATTTAATATGAAAATTATGTATATGTTTGTGTGATCTATGTGCACA
ATATCTGTTTGATTGATTAATAAGATTGTTGGTTATTGGTTTGAATGAGT
TTCAAAATATGATGAATTGATATAGATGTATAGTTTGTTGATTTGTTGAA
TTTTGTTGAATTTGGAGTGTTGGGAGTTCCGATATTTTTTGGTTTTAGTT
TTAGATTTGTTGGTAAAAAAAAGGACTAAACTAGTGAATTATTCATACCA
TTATTCTTCATATTCTTGAACCCTCTTGAATTGAAAATCATATGGATCTT
GAAAACCGTAATTAGATTTTAGTAAACTGTTTTGGAGATTAAAATTGTTA
TGTAAAATTTAATAGTATTAATTATTCAATTTTTAAAATTGTCTACATTT
AAATTCATTAATCTGTTTGACTGTAATAAATTCAAATTGTATGATGAGAT
ATAATATTAAGTAGTGATTGACTCCTTAAATTGTATTGATTGATTGATGT
CATAAATGTTTATAACGGTTTAAATATAAATTGTGTCTTGATTGAGGCAA
ACTTGTACCGTTCATAGGTGGCCATAAGCGATGTCGTATATTTCGGCTTG
TAAGAAGCAATTAACTTTGTTTTAATTACTTTAGTGTCTAACCAAAAATC
CGTCTTTTGGTTTAGACTTTATACGCACTTTTAAAAATAATTTATATTGG
GATATGTTATCCCTTTATAATTATTATAATGGAATATAAAATTTTTAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG
CTCATATTACTAACAAATTATATTTAAGAACATTATTACTTTTTAATGAA
CATATAAGATGACTAAATAAAANGCGTGGCCTATGAAATCTGATCTTAAA
ATAGAGTGTACATGCAATTACTAATTGATAAGGTTAATCATGCATGGATA
TATTGGTGTCTTAGCGGTTAATATTTTTTATTTTCCCGATATTCATCCTC
CTCTGAATCATTATTAATCATATATATTATCGCTATTCTGATGATAATAT
ACAAATGCACGTAGAATTAATTGTATCTTAGCTTTAACAGTTGTAGGAAA
ATCTACTGTTGTTTACAAAGTTGGCGAATGTGTACAAGATGTGTTAAAAT
TATGGAAGGAATTTGTATCCTCTCAAGCTGATAAATCTTCTGCAAGCCTT
CAGAACGGTTCTACTTTAGAAATCCGAATACCAGTTGAGCATGTCACGGC
GACAAATCGCCAAGTAAATTTTTTATATTTTAATGAGCATCAGACAATCA
CT
Sequences:
>MK001256_BSSR_099 ID=MK001256_BSSR_099; Name=MK001256 BSSR-099; organism=Daucus carota; type=genetic_marker
CGCCNAGTCTCTNCCATATGATATCGTGCCTGCAAATTCATGTATTATAC
ATGTTAACCCTCTTGATTTTGGTTGAGAGATCCAATTTTGAACTTGAAAA
AGATATTTAATATGAAAATTATGTATATGTTTGTGTGATCTATGTGCACA
ATATCTGTTTGATTGATTAATAAGATTGTTGGTTATTGGTTTGAATGAGT
TTCAAAATATGATGAATTGATATAGATGTATAGTTTGTTGATTTGTTGAA
TTTTGTTGAATTTGGAGTGTTGGGAGTTCCGATATTTTTTGGTTTTAGTT
TTAGATTTGTTGGTAAAAAAAAGGACTAAACTAGTGAATTATTCATACCA
TTATTCTTCATATTCTTGAACCCTCTTGAATTGAAAATCATATGGATCTT
GAAAACCGTAATTAGATTTTAGTAAACTGTTTTGGAGATTAAAATTGTTA
TGTAAAATTTAATAGTATTAATTATTCAATTTTTAAAATTGTCTACATTT
AAATTCATTAATCTGTTTGACTGTAATAAATTCAAATTGTATGATGAGAT
ATAATATTAAGTAGTGATTGACTCCTTAAATTGTATTGATTGATTGATGT
CATAAATGTTTATAACGGTTTAAATATAAATTGTGTCTTGATTGAGGCAA
ACTTGTACCGTTCATAGGTGGCCATAAGCGATGTCGTATATTTCGGCTTG
TAAGAAGCAATTAACTTTGTTTTAATTACTTTAGTGTCTAACCAAAAATC
CGTCTTTTGGTTTAGACTTTATACGCACTTTTAAAAATAATTTATATTGG
GATATGTTATCCCTTTATAATTATTATAATGGAATATAAAATTTTTAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG
CTCATATTACTAACAAATTATATTTAAGAACATTATTACTTTTTAATGAA
CATATAAGATGACTAAATAAAANGCGTGGCCTATGAAATCTGATCTTAAA
ATAGAGTGTACATGCAATTACTAATTGATAAGGTTAATCATGCATGGATA
TATTGGTGTCTTAGCGGTTAATATTTTTTATTTTCCCGATATTCATCCTC
CTCTGAATCATTATTAATCATATATATTATCGCTATTCTGATGATAATAT
ACAAATGCACGTAGAATTAATTGTATCTTAGCTTTAACAGTTGTAGGAAA
ATCTACTGTTGTTTACAAAGTTGGCGAATGTGTACAAGATGTGTTAAAAT
TATGGAAGGAATTTGTATCCTCTCAAGCTGATAAATCTTCTGCAAGCCTT
CAGAACGGTTCTACTTTAGAAATCCGAATACCAGTTGAGCATGTCACGGC
GACAAATCGCCAAGTAAATTTTTTATATTTTAATGAGCATCAGACAATCA
CT
This is the primary representative sequence for this feature.
Sequence Length:
1452