MK003429 K0873

Resource Type: 
Genetic Marker
Name: 
MK003429 K0873
Identifier: 
MK003429_K0873
Organism: 
Daucus carota subspecies sativus
Marker Type: 
SNP
Publication: 
  1. Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
  2. Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation.. BMC genomics. 2014 Dec 16; 15:1118.
Relationship: 
There are 6 relationships.
Relationships
The genetic_marker, MK003429 K0873, is adjacent to primer, K0873_X.
The genetic_marker, MK003429 K0873, is adjacent to primer, K0873_Y.
The genetic_marker, MK003429 K0873, is adjacent to primer, K0873_Common.
The genetic_marker, MK003429 K0873, is located in gene, DCAR_016658.
The genetic_marker, MK003429 K0873, is adjacent to gene, LOC108221229.
The marker_locus, K0873, is an instance of genetic_marker, MK003429 K0873.
MapViewer Marker Map Positions: 
Map NameLinkage GroupPositionLocusMapViewer
2016 Integ NG bin mapCH517.038K0873MapViewer
2016 Integ NG full mapCH517.554K0873MapViewer
2016 70349 NG bin mapChr551.909K0873MapViewer
2016 70349 NG full mapChr551.909K0873MapViewer
2014 70349Chromosome_551.909K0873MapViewer
Synonyms: 
  • MK003429
Sequence Coordinates: 
DCARv2_Chr5:5809209..5811267-
View location in JBrowse: 
DCARv2_Chr5:5809209..5811267-
Sequence: 
TGTTAGTGTTTCRGGAGAGGGAGGTTTAGTTGCGGATYGTGAATGTGGTG
TTGAGAATTTATCAGTTTCAA
Sequences: 
>MK003429_K0873 ID=MK003429_K0873; Name=MK003429 K0873; organism=Daucus carota; type=genetic_marker
TGTTAGTGTTTCRGGAGAGGGAGGTTTAGTTGCGGATYGTGAATGTGGTG
TTGAGAATTTATCAGTTTCAA
This is the primary representative sequence for this feature.
Sequence Length: 
71
Five Prime Flanking Region: 
TGTTAGTGTTTCRGGAGAGGGAGGTTTAGTTGCGGAT
Three Prime Flanking Region: 
GTGAATGTGGTGTTGAGAATTTATCAGTTTCAA
SNP: 
C/T