Resource Type:
Genetic Marker
Name:
MK005984 K3428
Identifier:
MK005984_K3428
Organism:
Marker Type:
SNP
Publication:
- Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.. Nature genetics. 2016 06; 48(6):657-66.
- Parsons J, Matthews W, Iorizzo M, Roberts P, Simon P. Meloidogyne incognita nematode resistance QTL in carrot. Molecular breeding. 2015; 35(5).
- Parsons Joshua D. QTL for Meloidogyne incognita root knot nematode resistance and other traits of interest in carrot (Daucus carota). Ph.D. Thesis. 2014. University of Wisconsin-Madison
Relationship:
| Relationships |
|---|
| The genetic_marker, MK005984 K3428, is adjacent to primer, K3428_X. |
| The genetic_marker, MK005984 K3428, is adjacent to primer, K3428_Y. |
| The genetic_marker, MK005984 K3428, is adjacent to primer, K3428_Common. |
| The genetic_marker, MK005984 K3428, is located in gene, DCAR_025030. |
| The genetic_marker, MK005984 K3428, is located in gene, LOC108193387. |
| The marker_locus, K3428, is an instance of genetic_marker, MK005984 K3428. |
MapViewer Marker Map Positions:
| Map Name | Linkage Group | Position | Locus | MapViewer |
|---|---|---|---|---|
| 2016 80592 NG bin map | Chr7 | 10.323 | K3428 | MapViewer |
| 2014 J.Parsons Th. Fig_3.5 | Chr7 | 37.606 | K3428 | MapViewer |
| 2015 MB Merged | Chr7 | 37.606 | K3428 | MapViewer |
| 2014 J.Parsons Th. Fig_2.4 | Chr7 | 37.606 | K3428 | MapViewer |
| 2014 J.Parsons Th. Br1091×HM1 | Chr7 | 10.323 | K3428 | MapViewer |
| 2015 Br1091×HM1 | Chr7 | 10.323 | K3428 | MapViewer |
| 2016 80592 NG full map | Chr7 | 10.323 | K3428 | MapViewer |
| 2014 J.Parsons Th. Fig_4.4 | F2_Chr7 | 37.606 | K3428 | MapViewer |
| 2016 Integ NG full map | CH7 | 43.48 | K3428 | MapViewer |
Synonyms:
- MK005984
Sequence Coordinates:
DCARv2_Chr7:22136942..22137016+
View location in JBrowse:
Sequence:
ACTGGTTAGCTCTCACTCACTCTCTCCCTCTCTCCCAYTGGTATCTCGAC
GAGACTAGCCCCTGGACTCTT
Sequences:
>MK005984_K3428 ID=MK005984_K3428; Name=MK005984 K3428; organism=Daucus carota; type=genetic_marker
ACTGGTTAGCTCTCACTCACTCTCTCCCTCTCTCCCAYTGGTATCTCGAC
GAGACTAGCCCCTGGACTCTT
This is the primary representative sequence for this feature.
Sequence Length:
71
Five Prime Flanking Region:
ACTGGTTAGCTCTCACTCACTCTCTCCCTCTCTCCCA
Three Prime Flanking Region:
TGGTATCTCGACGAGACTAGCCCCTGGACTCTT
SNP:
C/T