XM_017399451.1 | CarrotOmics

Resource Type:

mRNA

Name:

XM_017399451.1

Identifier:

XM_017399451.1

Organism:

Daucus carota subspecies sativus

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100	The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here.

Transcript Id:

XM_017399451.1

Product:

uncharacterized LOC108224735

Sequence:

CATGTCAATGGCTTCTGCAAGTAATAATCAAGCTTCATCTTCTTCTTCTT
CAACTTTGCATCCTACTAAATGGGACGTCTTCTTAAGCTTCAGAGGAAAA
GATACACGATACACATTTACCGATTATCTATACCATTCCTTGCAGCGCAA
TGGTATTAAAACATTTCGAGATGCTCCTAATATCCGCAGCGGAGAAATTA
TTACATCAGCATTGTTCCAAGCTATTCAAGATTCCAAAATTTACATTGTT
GTCTTGTCGCAAAATTTTGCTTCTTCACAGTACTGTCTTGATGAGCTCGT
AGAGATCCTCAGTTGTCGCGGAAAATTGGATAGATTGCTTATTCCGGTTT
TTTACTGCATCGAACCATCGGTTGTCAAGTACCAAACCGGAAGTTATGGT
GAAGCTTTCAGAAAACATGGAAATTATCATGGTCCGGATTTGTTGGATAA
GTGGCGTGCAACGTTAAGGAAGGTGGGGGAATTTTCAGGATACCATGTCC
GCGAAAATACGTTTCAAGTTGATGTTATCAATGAAATTACTGATAGGGTT
TTACAAGAAATTAATACCATGCCTTCGGCTCTGGAAGTAGCCCAATATCT
TGGGATGAATTCTCCTGTTAAAGATGAGGCAACATTGTCGAGTAATGTCA
CAGCAGGTGTGCACAACCAAAACAATGGCCCCTTTAAGGGCAGCAGCTTC
TTAGAAAACGCCAGGGAGGCTTCACAAACAAACAGAGGCATAGCAGCTGG
TTTACAACAGAAACCTGTCAATGATATTCTTAAATGTAAGAACATCACTA
TTGACAGTACTGACAGTGGAACTGAGTTGATAAGAGATAGAATTTGTTCA
GCAAAAATTCTTGTTGTTATTAATGATTTAGACGGCATAGTGCCACTGGA
ATTTTTAGAAGGACCATTCATTGTGGGGAGCACGATCAGAAACTCTCATA
TCTGTTACATGTCAATGGCTTCTGCAAGTAATAATCAAGCTTCATCTTCT
TCTTCTTCAACTTTGCATCCTACTAAATGGGACGTCTTCTTAAGCTTCAG
AGGAAAAGATACACGATACACATTTACCGATTATCTATACCATTCCTTGC
AGCGCAATGGTATTAAAACATTTCGAGATGCTCCTAATATCCGCAGCGGA
GAAATTATTACATCAGCATTGTTCCAAGCTATTCAAGATTCCAAAATTTA
CATTGTTGTCTTGTCGCAAAATTTTGCTTCTTCACAGTACTGTCTTGATG
AGCTCGTAGAGATCCTCAGTTGTCGCGGAAAATTGGATAGATTGCTTATT
CCGGTTTTTTACTGCATCGAACCATCGGTTGTCAAGTACCAAACCGGAAG
TTATGGTGAAGCTTTCAGAAAACATGGAAATTATCATGGTCCGGATTTGT
TGGATAAGTGGCGTGCAACGTTAAGGAAGGTGGGGGAATTTTCAGGATAC
CATGTCCGCGAAAATACGTTTCAAGTTGATGTTATCAATGAAATTACTGA
TAGGGTTTTACAAGAAATTAATACCATGCCTTCGGCTCTGGAAGTAGCCC
AATATCTTGGGATGAATTCTCCTGTTAAAGATGAGGCAACATTGTCGAGT
AATGTCACAGCAGGTGTGCACAACCAAAACAATGGCCCCTTTAAGGGCAG
CAGCTTCTTAGAAAACGCCAGGGAGGCTTCACAAACAAACAGAGGCATAG
CAGCTGGTTTACAACAGAAACCTGTCAATGATATTCTTAAATGTAAGAAC
ATCACTATTGACAGTACTGACAGTGGAACTGAGTTGATAAGAGATAGAAT
TTGTTCAGCAAAAATTCTTGTTGTTATTAATGATTTAGACGGCATAGTGC
CACTGGAATTTTTAGAAGGACCATTCATTGTGGGGAGCACGATCATAATA
ACAACACGACATGAAGATTTGCTAGATCCAATTGATGAAGAAGCCAAGTA
CAAGGTTAAAGAATTGGGTGATTTTGAGTCGCGTCAACTTTTTTGCCAAC
ATGGATTTGGAGGAGATAACGAAATGCTGGACACATTCAGCGAATTGTCC
AAAGAAATTCTGGAACTTGCTGGAGGACTTCAGCTGGCTCTTAAGGTTTG
TGGTTCGGCCTTGATCAAGGACTCTGAGGGAGGATGGAGTTGTTTTATTG
ATAAGTTGAGACAAGTTTCTATTGCCGGTGTAGAGGAGATACTACTGATT
TGCTTTGATGCACTGGGTGACCCTTTGAAAAATATATTCCTAGACATTGC
TTGTTTTTTTATTGGGCACGAGGAAAAAGATGTTGTTCAGATAATGGAAA
CTTGTTATGCATCCGTGAACCATGATGTTGGCATTTTAAAGAAAAAAGGT
TTGCTTACTATTAATTATCATGGATTCATGGTGCGTCAACAAATCATGAT
GCATGATCTGCTTGTTGATATGGGAAGGAAAATTGCATGTAACAACTCCC
CTGATGCATCAGAAAAGCACAGTCAATTGTGGGTACCGGAAATTATACAT
GAGGTGTTGAATGAGAACAAGGGAACAGAAGCAATTGAAGGTATGATCCC
GAGCAACTTTGGCTTCTTTAGGAACTTTAATCCTTTTTCCGAGGATAGCT
TGGAACATCTGGGGAGGAAATCCATTCTTGCCTCAAAAAGTAGACAATAT
GATGCTGAAACATTCAAAAGGATGAGAAAATTAAGATATCTTTACCTCCA
AAAAGTGAATCTCACTGGAAGCTTTGAACACAAATTTAAAGAGTTGAGGT
GGCTCTATTGGGAGCGTTGTCCCCTGTGGTATTTACCTTCTGATTTTTGC
CCGCAAAAACTTGTTTTTCTGGCATTGCATGGTAGCAAAATAAAAACAAT
GTGCACGTTCAGCAGGGTAGGCATCTTTAAGAACTTGAAGACTCTAGACA
TGAGGCATTCTTTTGATCTAACTACAATTTCAGACTTCACTAGATTACCG
TGTCTTGAAACTTTAAATCTCAAGTGCTGTAAAAGGTTGGAAGAGGTCCA
CCATTCAATTGGAAGTTTGGCGAGGCTTGTTTACTTAAATTTAGGGGGGT
GTAGTACACTAAAAGGTCTTCCAGGCAGCATTTGTAACTTAAAAGCACTG
AAACGCCTTCATATTTGGAGTTGTATTAATCTGAAATCAATTCCTAGGAA
CTTTGGGAACATTGAATCTCTGGTAAAGCTCGACGCAAGGTGGGCAAATC
TTAGAAAATTACCAGATTCGATTGGTTGTCTTAGTAAGCTTGTTAAGTTG
AACTTGTCTTCTTGTGAAAAACTTATAACACTTCCGGACACTATCTGCGA
TTTGAGATCACTAAATATTCTAGATATCGGTCGCTGTAGTAGTCTGGAAG
CATTGCCTGCAAGATTGGGGAACCTTGAATCCCTGGTAGAGCTCAGAGCG
GGGAATCTAATTGTTTCAGAATTACCAAATTCAATTGGACGTCTTAGTAA
GCTTGTTAAACTGTTCTTGTCTTGGTGCCACAAACTTAAAACTCTTCCGG
ACACCATTTGCAATCTGAAGTCACTGGAAATTCTAGATATTTATGGGTGT
ACTAGTCTCGAAGCATTGCCTTCAGAATTTGGGAAACTTGAATCCCTGGT
ACACCTCGGAGCGGGGGAACTTCAAAGTTGTATCAACTTGTTGTCTATTG
CAGAACTTCCTTCTAGTTTGAAATATCTAACCCTTGAGTGCTGCGAGTCT
ATGGAAAGATTACCAAATCTATCCAATTTGAAGCAGTTGGAGGATTTAAT
CCTGAGAGGTTGTCGTAGTTTGACAGAGATTCGAGGACTGGAGGAATTAA
CTTCTATTCAAAATCTTCATTTCGGAGGTTGCAACTCGTCTCTACTGAAA
TCCACTTTTACAAAACGTTTATTTCAGATATACTCTGAATTTGGGCATCA
GATAAAATTTTATGCTCCTCCATCAGTGTTTATGGACTGGATTAGTCGAT
CAGCAGACTGGATCAGCAAAACAAGTAATTCTGTATCGACAGTTTCTTTA
GATTTGCCAGAAGACCTGTCACAAAATTTCTTGGCAATGATCCTTTTCAT
TAAATCCTCTAGTAGAGGTAGAGCTGTTAGTTCTGTTAAGACTACCACAA
ACAACATTTCATGGAGCTTTAGGTATACAAGCTCCTATTATGATGATTAT
CAAGATATTTCAAGCATGGATATAGTACCAAGATCAGTATTCTCGGTTAC
AGACGATGATGATATAATTGAATTCACAGCAAGTCTAGAAGTAGAATCTT
CTGGTATTGGTATGCCTTTTACAAGAAAACTAGAAAAACCAGAAATTCTT
GGGATTCATCTAGTATACAAGCCGGAGATTAAGATAACTGACGAGTGCGT
ACAGTCAAATACAGATGAAGAAATCTTCTTTGAGGCGGTTGAAACATTTG
GAATAATTAAAGATAAGTATTCTTATTTAGGGTTTTTCTGGAACCTAAAA
AGTCTACCGGACAGCTTGTGCCACTTAAAAGCACTAAGAAGCCTTTCTAT
TGACAATTGTTGGAATCTGATAGCAATTCCTGGGAACATTGGGAACATTG
AATCTCTGCGAACTAACAATGTTTCCAAATGGGACGTGTTCATAAGTTTC
AGAGGCTCAGACACAAGATACACATTTACCGATTATCTCTACCACTCCTT
GAAGCGCACTGGCGTTCGAACATTCCGAGATGATCCTGAGCTACGTAGCG
GAGAACTAATCTCGGACGCACTGCTCCAAGCGATACATGAATCGAAGACC
TACGTTGTTGTCTTGTCGGAAAACTATGCTTCTTCGAGATGGTGTCTAGA
TGAGCTCGTGGAGATCAAGTCAACGGGGAGACTGATCGTTCCTGTATTTT
ATAACATTGAGCCGTCAGTTGTCAAGTACCAAACCGGGAGGTTTTACCAA
GCTTTTGAAGCTCATGAATCTCGTTATGGTAGTCATATGGTGGATAGATG
GCGCGTCACATTGATGAAGGTTGGGAACTTGTCAGGATACCATGTCCATG
AAAAAATGTCCCAAGTTGCTATTATTGATGAAATAGTTGATAGAATTTTA
CTGGAAATAAATCCTGTGACTTTGGATGTTGCCAAATACCCAGTGGGGTT
GGATACTCGTGTTAAGGACATAACAGCATTGTTGAGCAATGACACAAAAT
GTGTCAATAGGATTGGCATACATGGTATGGGTGGAGTTGGCAAAACAACT
CTTGCCAAAGCTGTGTATAACCAAAACTATCATCGCTTTCAGGGCGGATG
CTTCCTAGCAAATGTGAAGGATGTTTTAGAAACAAGAAAGGGCCTAATAT
GTTTGCAACAGAAACTTATTAGTGATGTTCTTAAATGTAAAAACATTACC
ATTGACAATGTTGACCAAGGGATTGAGGTAATAAGAGCTAGAATTTGTTC
TACAAAAATATTAATTGTTATTGATGATCTGGACAACTCAGCGCCATTGG
AATATTTAGAAGGACCATTTGCTTTTGGCAGCGCCATCATAATAACAACA
AGATATGAAGATCTACTGGATTCAATTGAAGTAGAAGCCAAATATAAGGT
AAAGGAATTGGGAGATGCTGATTCACGTCGACTATTTATCCAACATGCAT
TTGCAGATAATAATATATCTGATACATTCATGGAACTATCTAAAGAAATT
CTAGAACATGCTGGGGGGCTCCCACTGGCTCTTAAAGTTTGTGGTTCAAA
CTTGCTTAATCAATCCGAGGAAGGATGGAGATGGTTCATTGACAAATTAA
GACGAGTTTCTCTTGACGATGTTGAGAAAAAATTGTTGATTAGTTTTGAT
GCCTTGAAACTGGTTGATCCTATGTTGCAGGATATTTTTCTAGATATTGC
CTGCTTTTTCATTGGGGATAAGGCAAAAGAAGTTGTTCAAATAATGGAAA
CTTGTTATACATTCAGCAATCGTAATATCGACATTCTCAAGAAAAGAGAT
CTACTAAGCATCAATGACAGAGATGAGTTGGAGATGCATGATCTACTTCG
GGATATGGGAAGGAAAATTTCGTGTAACAACTCTCCTGATGAGCCAGGAA
AACACAGTAGATTATGGGTAACAGAAGATATATATGACTTGTTAAAGAAT
GACAAGGGAACAGAAGCAGTTGAAGGTATCATCTTTGGTACAGGAACATT
GGTCAATAACCTTCCTCCTGATATTTTTTCCCATCATAGAGCTATCTTTG
ATCATTTCACTACTGATACATTTCAAAGAATGAGTAAACTAAAGTTCCTT
CACCTCGAGTATGTGAAGCTCACAGGAAGCTTTGAACATTCATTTAAAGA
TTTGAGGTGGCTCCATTGGAAGTTTTGTCCTTTGAAGTGTTTACCTTCTG
ACTTTTACCTGCAAAGACTTGTTATGCTTGAATTGCCTCATAGCAAACTG
ACTACAATATGGAAGATAAACAGATCTTTTTTGCAGATTCCACATGTATT
TGAAAACCTGAAGACTTTAAACATGTCCCATTCTCTAGATCTAATTACTA
CTTCAGACCTCACTAGACTACCGTATCTTGAAACTTTGAATCTCGAGGGG
TGTGAAAGTTTGAAGGAGCTCCACATCTCAATTGGAAGCTTGGTGAGGCT
GGTTTCTCTGAATTTGCAGTTTTGTGTCAAACTAAAAAGTCTTCCGGACA
GCATTTGTAACTTGACAGCACTGAAATGTCTTAACATTGCGCGCTGTAGT
AGTTTGAAAGCACTTCCTACGAACTTGGGGAACATTGGATCTTTGGAAGA
GCTTAATGCAAAGTGGCTAACTATAAACAAATTACCACATTCGATCGGTC
TTCTAGGTAATCTTATTGAGCTGAAGTTGTGTTTTTGCGGAAACCTTGAA
ACTCTTCCTGACACTATTTGCAATCTGAGGACACTGAAAATTCTATATAT
TGATGGTTCCTGTCGGCTAAAAGCATTGCCTGAAGAATTGGGTAACCTTG
AATCGCTGGTAGAACTCAAAGCGGAGAATCTAATTGTTTCAAAATTACCA
GATTCAATCGGGCGTCTTAGTAAGCTTATTGAGCTGAACCTGTCTTGTTG
CAGCAAACTTGAATCTCTTCCAGAAACTGTCTGCAATCTTAGATCACTGA
AAATTCTGGATATTGGCTGGTGTAGTAGTGTGAAAGCTTTACCAACAGAA
TTGGGGAACCTTGAATCTCTAATAGAGCTCAAGGCTATGAGACTAACTGT
ACCAAAATTACCGGATTCGATTGGACGTCTTAGTAAGCTTGTTAAGCTGA
ACTTGTCTGTTTCCGAAAAGCTTAAAACTCTTCCAGATAGTATTTGCAAT
CTAAGATCACTGAAAATTCTGGATATTGATGATTGCCATATGCTAGAAGC
ATTGCCTACAGAATTGGGGAACCTTGAATCGCTGGTAGGGTTCAAGGCGG
AGAGAATAAAGGTCTTAAAGTTACCTGATTCGATTGGGCACATTAGATCA
CTGGAAAATATCTGGCTTAAAGGCTGTTTCAACTTGTTGTCTATTGCAGA
ACTTCCTTCTAATTTAAAATTACTAAGCCTTGAAGGTTGCAACTCCATGG
AAACATTACCAAATCTATCGAATATGAAGCAATTGGAGGAATTAAACCTT
ACAGGTTGTAGTGTCTTGACAGAGATTCAAGGCTTAGAAGATCTTTCTTC
TATTAAAACACTCCATCTGGGAGGTTGTGACTCATCTATGCTAGCAGACA
CTTTCACAAAGCATTTCTTTCAGATATACTCTGGATTTGGGCATCACATT
AAAATTTATGCTTCGACATCAGTGTTTCCAGACTGGATTTGTCAATCATC
AGACTGGATTGGTAAAACCATTTCATTTGGGTCAAAAGTATCTTTAGATT
TGCCGCCAAACATGTCACACAATTTCTTGGCACTGATCCTCTGCTCGAGA
TTCTCGAGGGATGGCGAGGCCTATTATTCTGTTAAGACTACCACAAATGA
TTTTGTATGGAGACAGGGGGTTCCTTCATTAAGATACTTTTATGACCATT
ATGATGATTATAACCGTGTCCCATGTATGGACGTAGTACCAAGAAAAGTT
TTTTCTGTCACAGACAGTGACTATAGAATTATATTCAAAGCACGTCAAAA
GTATTATGAATCATGTGGTGACAATGTGACTCTATTAACCCAAGCAGCAG
AAATTCTTGGGTTGTATCTCCTATACAAACCAGAGATCACAGTATTTAAT
GAGTGCAACAGAACCACCATCGATGTAGATGAAGAAGGAAGACATTCTTC
CAAACGCTTGAAACATTTGTTAAAGTTTTTCAATCTGTTCACTGAATATA
TAATGGCTTCTGCAAGTCATTCTCAAAAGCCATTTGCTTCTGCTTCAACT
TCGGATCCTACTCAATGGGACGTGTTCCTAAGCTTCAGAGGTATAGATAC
CAGATACACATTCACTGATTATCTTTTTGATTCTTTAAAGCGCACTGGTA
TTCGGACATTTAGGGATGATCCTGAGCTACGCAGTGGTGAAGTTATCTCA
GATGCTTTGCTGCAAGCTATACGTGAATCTAGGACTTATGTTGTTGTCCT
CTCCGAAACTTATGCTTCTTCCAGATGGTGCCTCGACGAGCTTGTAGAGA
TAGTTGGTTGTTGCCAATCAATTGGTAGACTGGTTCTTCCCGTGTTTTAC
AACATCGAACCATCGGATGTACGCCACCAAACTGGGACTTTTAGTGAAGC
TTTCCACGTACATGATCCTCGGTATGATAGGGATAGGTTGGAGAAGTGGC
GCTTAGCACTGATGAAGGTGGCCAGTTTTTCGGGGTACCATGTCAACAAA
AATATGTCTCAAATTGATATTATCCATGAGATTGTTGATAGACTTTTACT
GGAAATTAATCCTTCGACTTTGCATGTTGCTAAGTATCCAGTTGGGTTGG
ATTCTCGTGTTAAAGACATAGCAACGTTGTTGAGAAATTCAAGGGAAGGT
GCCACTAGGATTGGTATACATGGTATGGGTGGAGTTGGCAAAACAACACT
TGCAAAAGCTGTGTTTAACCAACAATACCACCGTTTTCAGGGTAGCTGCT
TCCTACCAAACGTTAGGGAGGCTTCAGGATCAAGGAAAGGCCTGGTATGG
TTACAACAGAAACTTATTGATGATGTTCTTAAATGTAAAAGCATTACCAT
TGACAGTGTTGACCAAGGAATTGAGCTGATAAGAGCTAGAATTTGTTCAG
CAAAAGTGCTGATCGTTATTGATGATTTGGACAGTGCAATGCCTCTGGAA
TTTTTAGAAGGGCCATTTGTTTTGGGGAGCACAGTCATAATAACAACACG
ATGTGAAGATCTACTAGATACGATTAAAGTAGACGCCAAATACAAGGTAA
ATGAACTCAGTGATGCTGAGTCACGTCTGCTTTTTTGCCAACATGCATTC
GGAGGAGATACTAGAATGTCCAACACATTCATCAAATTGTCGAAAGAAAT
TCTAGAACATGCTAGAGGGCTTCCGTTGGCTCTTAAGATTTGTGGCTCGG
CCTTGCTTAACAAATCTGAGGAAGGATGGAGATGGTTCATCGACAGAATG
AGAAGAGATACTATTGTTGATGTTGAGAATATACTGTTGATTAGCTTTGA
TTCTTTGAAATTTTTTGACCCTATGCTGCAAGATATTTTCCTGGATATTG
CTTGTTTTTTTGTCGGGCGTGAGAAGGAAGAGGTTGTTAAAATAATGGAC
ACTTGTTACAAGTTCCCGAATCATAATATTGACATCTTAAAGAAAAGAAG
TTTGCTAACCATCGATAATGGAAATAGTTTGGGGATGCACGATCTGCTTC
GGGATATGGGAAGGAAAATTGCGTGCAACAACTCTCCTATGGAGCATGGT
GAACATAGTAGATTGTGGTTATCACAAGTTATATACAATGTTTTGAAGAA
GGAAAAGGGAACTGAAGCCATTAAGGGTATCATCCCTAGCTACTTTAACT
TGCACATGAATTGTGCGACAGTAAGAACTCGTTTTGCTGCCAAAACATTC
ACAAAGATGAGCAAATTAAGATTTCTTTACCTCGATAATGTGGATCTTAC
TGGAAGCTTCAAACATACATTTAAAGATTTGAGATGGCTCTGTTGGTGGG
GTTGTCCTTTGAAATGTTTGCCTTCTGAATTTTATCCGCAAAAACTTGTT
TCCCTTGCTTTACCTCGTAGCAAAATTAGGACGTTGTGGGAGCTAAACAT
GGTTCCGCATGTTTTTGACAACTTAAAGACACTAGACTTGTCGAATTGTA
AAGATTTAACTACTGTTACAGACTTCACTAAATTGCCTTGTCTGGAAACT
CTAAATCTGGAGGGCTGTAGTAGCTTGGAGGAGGTCCACATATCAATCGG
AAGTTTGGTGAGGCTTGTTTCCATAAATTTGCGGTGGTGTTGGAACCTAA
AAAGTCTTCCACACAGCATCTGCAACTTGAAAGCACTGAAAAGTCTTGAT
ATTGAATGTTGCTATGGGCTGGAAGCAGTTCCTATAAATTTGGGGAACAT
TGAATCTTTGGTTGAGCTCAATGCGGCGAATCTATATATTTGCAAACTGC
CAGATTCAATCGGCCATCTAAGTAAGCTTATTAAGCTATTCTTATATTAT
AACAACATTGAAACTCTTCCAGACACCATTTGTAACCTGAAGTCAATAGA
GATTCTGGATATCAGTGGTAAGGGAGAAGGTGAAATTGGTGGTTTGAAAA
CATTGCCGAAAGAACTGGGCGATCTTGAATCTCTAAAAGTGCTCAGTGCG
TGCTCACTAGATGTATCCAAATTACCGGAATCAATGGGACGTCTCAGTAA
ACTGGTTAAGCTGAGATTAAGCAATAACTTATACCTTGAAAATCTTCCAG
ACAGCATCTGCAACTTGAGAGCACTAAAGAATCTAGATATTAGTGGTTGC
ACTAGTCTTCAAGTATTGCCTATAGACTTTGGCAACCTTGAATCCCTAGT
AAAGTTATTTGCTAGGAAACTAAGTATTTCAAGTTTACCTGAATCAATCA
GACACAATAGATCACTGAGAACTCTTTCACTTGCAAGTTGTAGTCATTTG
TTAAACATTGCAGACCTTCCTTGTAACTTAAAGCGGATATGCCTTGAAAG
TTGCACGTCTGTGGAAAGATTACCAAATCTATCAAATATGAAGCAGTTGG
AGGAATTAGACCTTACAGGTTGTAGTGGTTTGACACAGATTCAGGGCTTG
GAGGAACTCACCTCTATTAAAACACTTCATCTGGGAGGTTGCAACTCGTC
TATGCTTGCAGACACTTTTACAAAACACTTCTTTCAGGTATACATTTCAT
TTGGGCAACACATTAGAATTTACGCTTGCCCATCAGTTTTTCCAAAGTGG
ATTAGTCAATCAGCAGATTGGATTAGTGAAACAAGTGATTCAGGATCACC
AGTGTCTCTGGGATTGTCGCCAGACGTGTCGCATAATTTTTTGGGAATGG
TTCTCTGCTTTGATCACATGGAGGATATGTATTTTCAGAGAGCTGTTTAT
TCTGTTAAGACTACCACAAGTGATTTTGCATGGAGTGACGGACGTTATTT
TTCCTTTTATACTGAAGATGAGGAGGAAGAATTTGACCATTGCTCCTGCA
TGCATATAGTACCAAAATCAATCTTCTCGTTGAGCGATGATGATGATGAA
ATTGAATTCACGGCTGCTCCAGTGATATTTTATTTTAAGTTTGGTGATCT
TGAGGATTGTGAAAGAACAGAAACTGCAAGAATTCTTGGAATTCATCTAC
TATACAAATCAGACTTGCAGTGATTGACGAGTGCAAGAGTAGCATTACAA
ACGCAGAACAAGAAGAAGAAAGAAGCTGCCCCTCTTAACAATTTAAACAT
TGGCAAAGTCACAATAGGTAGCTCTCCGTCTCTCCCAAGTTCTAGATGTG
AGGATCCTTTGGAAAGTGACAAGAACATTTGTTTCATAACTGCATTATGC
GTGCAAGTCAGGGAAAGACAAGAGATGTGCGCTTGAGCACTTTGAATTCT
TTCAACATAGTTAATGACTATCAGTAAGTGTTTCCTTGTCACAGTACATC
TATGCAAGTTATCATAAGAAGCTCGCTGTTACATCAATTATGTTCACTTT
TTCTATCGTAAAGTCCAGAAACTAGTTGAAATTTTCCCAAAACCTGTTGA
GTTGTATTTTACCAACCAAAGCTTCCACTCAATATTTTTATTAACTCGTG
TTTGATCAAGAAATATGAGATATTATTTGCAGTACTGTAATCACAAATTT
GAAGATTTGAGGTGGCTCTATTGGCGGAATTGTCCTTTTGAAGCGTTTAC
ATATTGAATTTTACCCAAACAACGTTTTTTTCTTGCATTGCCAGGTAGTA
GAACAAGAACAATGTGGGAAGTAAACATGGTTTTTGAAAAAATGAAGACT
CTGGGGGACTCCTTGAAACTTCTGAAATTTAAAGTGTTGATATGCTTATC
ATGTCTGGTGTTGGTTTGATAGATTTTGAAGAGCGCTACAAAATGTTGTT
TGGTTACTGGATCAACTTACCTGATACACACTGGGAAGTTAAATGAAACC
TAGACACTAAGTAGTATGCCGATTGAACCTAATGCCTCCGGAAGAAATAT
AGAGAGCGTAATGGTAATTTCCGTATGGAGAACATGTGATATTGTTTCGA
CTTTGGAGGAGTCCATTGATGAGTATTACTGGCATGGGCTGGGGAGATAT
AAGATGGGGACGCTTGACTCGTCTTCTCATCGTCGGCTGCAGCTTCTGAC
CGTTGCCAAACGATGTTTCCAGCACAGAGGAGTCTCTAATATCCGCAGCA
AATCAGACTAAAAACGGAAACTAGAGAGTTGCATTACTTCACTACTGTTG
TAGCGCACAATGGTTCCAGTGGGTATATCGTCAAAGGATCTTAGGAAATT
CCAAACAGTCTTGGGTGCTTTGTGTAACAACTAACTGTGAGAAACAGATG
GAGTACAATGCCAACTTGTGTGAAAACTGAACTAACAGCAAATGCACATA
TTTTTCGTATTCATATTCTGATTCAGAACGCT

Sequence Length:

13032

Sequence Checksum:

3367e60a77a3056ea964f56c7977e917

View location in JBrowse:

DCARv2_Chr1:47833327..47865054+

Protein Sequence:

MSMASASNNQASSSSSSTLHPTKWDVFLSFRGKDTRYTFTDYLYHSLQRN
GIKTFRDAPNIRSGEIITSALFQAIQDSKIYIVVLSQNFASSQYCLDELV
EILSCRGKLDRLLIPVFYCIEPSVVKYQTGSYGEAFRKHGNYHGPDLLDK
WRATLRKVGEFSGYHVRENTFQVDVINEITDRVLQEINTMPSALEVAQYL
GMNSPVKDEATLSSNVTAGVHNQNNGPFKGSSFLENAREASQTNRGIAAG
LQQKPVNDILKCKNITIDSTDSGTELIRDRICSAKILVVINDLDGIVPLE
FLEGPFIVGSTIRNSHICYMSMASASNNQASSSSSSTLHPTKWDVFLSFR
GKDTRYTFTDYLYHSLQRNGIKTFRDAPNIRSGEIITSALFQAIQDSKIY
IVVLSQNFASSQYCLDELVEILSCRGKLDRLLIPVFYCIEPSVVKYQTGS
YGEAFRKHGNYHGPDLLDKWRATLRKVGEFSGYHVRENTFQVDVINEITD
RVLQEINTMPSALEVAQYLGMNSPVKDEATLSSNVTAGVHNQNNGPFKGS
SFLENAREASQTNRGIAAGLQQKPVNDILKCKNITIDSTDSGTELIRDRI
CSAKILVVINDLDGIVPLEFLEGPFIVGSTIIITTRHEDLLDPIDEEAKY
KVKELGDFESRQLFCQHGFGGDNEMLDTFSELSKEILELAGGLQLALKVC
GSALIKDSEGGWSCFIDKLRQVSIAGVEEILLICFDALGDPLKNIFLDIA
CFFIGHEEKDVVQIMETCYASVNHDVGILKKKGLLTINYHGFMVRQQIMM
HDLLVDMGRKIACNNSPDASEKHSQLWVPEIIHEVLNENKGTEAIEGMIP
SNFGFFRNFNPFSEDSLEHLGRKSILASKSRQYDAETFKRMRKLRYLYLQ
KVNLTGSFEHKFKELRWLYWERCPLWYLPSDFCPQKLVFLALHGSKIKTM
CTFSRVGIFKNLKTLDMRHSFDLTTISDFTRLPCLETLNLKCCKRLEEVH
HSIGSLARLVYLNLGGCSTLKGLPGSICNLKALKRLHIWSCINLKSIPRN
FGNIESLVKLDARWANLRKLPDSIGCLSKLVKLNLSSCEKLITLPDTICD
LRSLNILDIGRCSSLEALPARLGNLESLVELRAGNLIVSELPNSIGRLSK
LVKLFLSWCHKLKTLPDTICNLKSLEILDIYGCTSLEALPSEFGKLESLV
HLGAGELQSCINLLSIAELPSSLKYLTLECCESMERLPNLSNLKQLEDLI
LRGCRSLTEIRGLEELTSIQNLHFGGCNSSLLKSTFTKRLFQIYSEFGHQ
IKFYAPPSVFMDWISRSADWISKTSNSVSTVSLDLPEDLSQNFLAMILFI
KSSSRGRAVSSVKTTTNNISWSFRYTSSYYDDYQDISSMDIVPRSVFSVT
DDDDIIEFTASLEVESSGIGMPFTRKLEKPEILGIHLVYKPEIKITDECV
QSNTDEEIFFEAVETFGIIKDKYSYLGFFWNLKSLPDSLCHLKALRSLSI
DNCWNLIAIPGNIGNIESLRTNNVSKWDVFISFRGSDTRYTFTDYLYHSL
KRTGVRTFRDDPELRSGELISDALLQAIHESKTYVVVLSENYASSRWCLD
ELVEIKSTGRLIVPVFYNIEPSVVKYQTGRFYQAFEAHESRYGSHMVDRW
RVTLMKVGNLSGYHVHEKMSQVAIIDEIVDRILLEINPVTLDVAKYPVGL
DTRVKDITALLSNDTKCVNRIGIHGMGGVGKTTLAKAVYNQNYHRFQGGC
FLANVKDVLETRKGLICLQQKLISDVLKCKNITIDNVDQGIEVIRARICS
TKILIVIDDLDNSAPLEYLEGPFAFGSAIIITTRYEDLLDSIEVEAKYKV
KELGDADSRRLFIQHAFADNNISDTFMELSKEILEHAGGLPLALKVCGSN
LLNQSEEGWRWFIDKLRRVSLDDVEKKLLISFDALKLVDPMLQDIFLDIA
CFFIGDKAKEVVQIMETCYTFSNRNIDILKKRDLLSINDRDELEMHDLLR
DMGRKISCNNSPDEPGKHSRLWVTEDIYDLLKNDKGTEAVEGIIFGTGTL
VNNLPPDIFSHHRAIFDHFTTDTFQRMSKLKFLHLEYVKLTGSFEHSFKD
LRWLHWKFCPLKCLPSDFYLQRLVMLELPHSKLTTIWKINRSFLQIPHVF
ENLKTLNMSHSLDLITTSDLTRLPYLETLNLEGCESLKELHISIGSLVRL
VSLNLQFCVKLKSLPDSICNLTALKCLNIARCSSLKALPTNLGNIGSLEE
LNAKWLTINKLPHSIGLLGNLIELKLCFCGNLETLPDTICNLRTLKILYI
DGSCRLKALPEELGNLESLVELKAENLIVSKLPDSIGRLSKLIELNLSCC
SKLESLPETVCNLRSLKILDIGWCSSVKALPTELGNLESLIELKAMRLTV
PKLPDSIGRLSKLVKLNLSVSEKLKTLPDSICNLRSLKILDIDDCHMLEA
LPTELGNLESLVGFKAERIKVLKLPDSIGHIRSLENIWLKGCFNLLSIAE
LPSNLKLLSLEGCNSMETLPNLSNMKQLEELNLTGCSVLTEIQGLEDLSS
IKTLHLGGCDSSMLADTFTKHFFQIYSGFGHHIKIYASTSVFPDWICQSS
DWIGKTISFGSKVSLDLPPNMSHNFLALILCSRFSRDGEAYYSVKTTTND
FVWRQGVPSLRYFYDHYDDYNRVPCMDVVPRKVFSVTDSDYRIIFKARQK
YYESCGDNVTLLTQAAEILGLYLLYKPEITVFNECNRTTIDVDEEGRHSS
KRLKHLLKFFNLFTEYIMASASHSQKPFASASTSDPTQWDVFLSFRGIDT
RYTFTDYLFDSLKRTGIRTFRDDPELRSGEVISDALLQAIRESRTYVVVL
SETYASSRWCLDELVEIVGCCQSIGRLVLPVFYNIEPSDVRHQTGTFSEA
FHVHDPRYDRDRLEKWRLALMKVASFSGYHVNKNMSQIDIIHEIVDRLLL
EINPSTLHVAKYPVGLDSRVKDIATLLRNSREGATRIGIHGMGGVGKTTL
AKAVFNQQYHRFQGSCFLPNVREASGSRKGLVWLQQKLIDDVLKCKSITI
DSVDQGIELIRARICSAKVLIVIDDLDSAMPLEFLEGPFVLGSTVIITTR
CEDLLDTIKVDAKYKVNELSDAESRLLFCQHAFGGDTRMSNTFIKLSKEI
LEHARGLPLALKICGSALLNKSEEGWRWFIDRMRRDTIVDVENILLISFD
SLKFFDPMLQDIFLDIACFFVGREKEEVVKIMDTCYKFPNHNIDILKKRS
LLTIDNGNSLGMHDLLRDMGRKIACNNSPMEHGEHSRLWLSQVIYNVLKK
EKGTEAIKGIIPSYFNLHMNCATVRTRFAAKTFTKMSKLRFLYLDNVDLT
GSFKHTFKDLRWLCWWGCPLKCLPSEFYPQKLVSLALPRSKIRTLWELNM
VPHVFDNLKTLDLSNCKDLTTVTDFTKLPCLETLNLEGCSSLEEVHISIG
SLVRLVSINLRWCWNLKSLPHSICNLKALKSLDIECCYGLEAVPINLGNI
ESLVELNAANLYICKLPDSIGHLSKLIKLFLYYNNIETLPDTICNLKSIE
ILDISGKGEGEIGGLKTLPKELGDLESLKVLSACSLDVSKLPESMGRLSK
LVKLRLSNNLYLENLPDSICNLRALKNLDISGCTSLQVLPIDFGNLESLV
KLFARKLSISSLPESIRHNRSLRTLSLASCSHLLNIADLPCNLKRICLES
CTSVERLPNLSNMKQLEELDLTGCSGLTQIQGLEELTSIKTLHLGGCNSS
MLADTFTKHFFQVYISFGQHIRIYACPSVFPKWISQSADWISETSDSGSP
VSLGLSPDVSHNFLGMVLCFDHMEDMYFQRAVYSVKTTTSDFAWSDGRYF
SFYTEDEEEEFDHCSCMHIVPKSIFSLSDDDDEIEFTAAPVIFYFKFGDL
EDCERTETARILGIHLLYKSDLQ

Relationship:

There are 2 relationships.
Relationships
The mRNA, XM_017399451.1, is a part of gene, LOC108224735.
The polypeptide, XM_017399451.1, derives from mRNA, XM_017399451.1.

Cross Reference:


NCBI Gene	108224735
NCBI Nuccore	XM_017399451.1

Gene:

LOC108224735

Model Evidence:

Supporting evidence includes similarity to: 4 Proteins, and 81% coverage of the annotated genomic feature by RNAseq alignments

Gbkey:

mRNA