XM_017396563.1 | CarrotOmics

Resource Type:

mRNA

Name:

XM_017396563.1

Identifier:

XM_017396563.1

Organism:

Daucus carota subspecies sativus

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100	The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here.

Transcript Id:

XM_017396563.1

Product:

uncharacterized LOC108222676, transcript variant X1

Sequence:

CTTGTCAAAAAGAAGCAAGGCAGGGGTAGATGTGAAAGAGAAGGGGACGA
GAGTGTTTGGAAATCGGAATGGTGGCACAGCAATGGTCGTTAAACCAGGA
AAGCCAAACACGGCCCTAAGAAAATAGTTTTCAACTAAAATTACAGTCGG
AGATTGCAGAATCGTGATTTTTGAATCCGTCGTATCAACTAGTTCTATTC
ACTGAAGCTAATCTACTATCTTCTCAGTAGTTATGGACGCTCCTGCTCTA
CTTCAGTTGCACAAGTGGGGACCTGATGTGCATCTCAACGTATCGCAATT
TCGGGAGGCTTTTATGTCTCCCACCAGGCACCTACTGTTACTGCTTTCGT
ATCAGTGCGAGGCTATGTTGCTTCCTCTTGGGGAAGGTCTAGCTTCGATT
TCTGCATCTTCTTCTTTGGAAGAGTCGTTTGCCCCTGATAGGGCAGATTC
AAAGGTGAATATTGCAAGTACCTCTGAATCAATCAAGATGGTATCTGATA
ATAGTATACCTTCCGACAACCATGATCTCAATCCCAGTAATCATCATCCT
TTTATTTCTGATGTACACTCACTTGCATGGGGTATTTGTGAAGAAACCTA
TGGTAGCCAAGATACAGCTTTAGCTAGAGATCTTCTTTTTGTTTGCGGAA
ATCATGGAGTAACTGTCCATGTTTTTGCTCGACCCAGTAAAGACAGTGAA
GTGACCAAACCAGCTATGGAGAGTGAGCATCGTCAAGGGGTATGGGTGGA
GTGGGGACCATCTATTACTCCACCATGCAGTAAGACAGCTCAAAAAAGTT
CCAGCTTGCATGTGGAAACCTCTGGCGAGGTAGTTAAGGAAAGTAAAACT
GATGTAATTGCCAGGGAGGATGGGAAATTAAAAAATATGTCTCAAAAGAG
ATGGTTGCGTACATTCCTAACCAAACCTGAAATGATAAAATCTGAAGGTA
TTATATATACCATGCTACCGGAGATGTCATCGCTACCTTCCACAACAATG
ATAAATTCATTTGGGCTTTTTGGTAGTGATTCTAAATCTTCACACTTTCA
GACTGATACGCAACCAAAATCTCATATAGATGGCGAAAAGAATGATTCAG
TTTTAGATGTTGTAAACAATGCATATTCACACGGGGATTCTAGTTCTTCC
GGGAAAGTAATTTCCCCTGATGCTCTTTTGAAGTTTTTGACTGGTAGTAT
AAGTAGTTCATACATATGCTCTACAGTGTTCTCTAGCAACTCAAACCACA
TGATTGGGTTTGTTTTGATGTTAGTTGATCCTGTACCCGCTGACCCCAGT
GATAAACATGAAATAGATGAAGAAAAAATTGTTATTGTCGTGGCTAAAAT
GGTCAGCTCTGGAATACAGTGGGTTTGCTTGGCAAGGCTTGCTGAGATTG
TAGACAGAGGCCCTATAGTTGAATGGACAGACTTCAAATTTTCAGATGAT
TTTCTCATTTGTCTTAATGCAGTTGGTCTAATATACTTCTACTCAGCTAC
AACCGGTGAATATGTAGCACATCTGGATCTCTTACAAAGCAATGGTTTTT
CTCCTCAATTTAATTATAAAGATTGTGAAAAGTTTCAAAAAGGTGATGAT
GCCCCCACTAGTACTGGCATTGAAGGTGAAATCAATGGTATCCAATCCTC
TCATGATATTCCTAGCAAAAGTATATTTAGGAGACTGCTACTTGCATCGC
ACACCACACTCTTGGCCGTAACAGATGTGCATGGTGTAGTTCATGTAATA
TGTGTTGAAAATCATTTACAAGGGAAAGATCACATGCTTAAGAAATCACT
TAAAAGTTTTCAGGATTTTAATATGAGGACTTTGGTTGGTTGGGAGGTTG
GTGGGGCTGAAATTGGCTGTCAGAGGACGTTTTCTGATACATGGCCATCC
TTGCTATCAGTTCATAAATATTATTTTACAGGTAACATGGGCTACAATGA
ATTTCCTGGGCTTCAGGTTTTTGGGGAAAAAACAGGTGGTTGTAAGTCAG
TACTTAGTGGTTTCTCGGTTGGATCCCAAACAGTTGAAACAGAATATCCT
TCCTCTTCATTTCCTCGTGCTGTAAGGAATCTTTTTCTTCCTACCCAAAG
ATCTGAAGAAGGCAATGTACTTTGTTTTTCTGCCTTTGGAATTATAAGAC
TTACTAAAAAGAAAAATAAAGAGAGGTGTTCCCAGATTGTTTGTTCCAGT
TTGCATGTAGGTTCAGCTACAATGAATGATTTAAGCACGAATTCGAAAGG
TTTGGATATTTCTATAGGCGAAGCTGTAGGTTGTACCTATAAAGGTGGTT
GTTATTTGGTGACTGAAGATGGTCTATCAGTAGTTCTTCCATCCATGTCA
GTTTCTTCTAATTTCTTTCCTGTTGAAGCTATTGGTCATCGACAGAAAAC
TGTCAGTACTGCTGCTACTGCTTCCCAAGCTGGGATCCTCTTTGAAACCA
AAGAAATCAAAAAGCAGTCTTTTCTTCCCTGGAAAATAGAGCTGTTGGAT
CGGCTACTCTTATACGAGGACTCTGAAGAGGCAGATCGCTTGTGCTTGGA
AAATGGCTGGGACTTGAAAATATCTCGAATTCGCCGCTTGCAACTGGCTT
TGGACTACCTGAAATTTGACGAGATTGAGATTTCATTAGAGAAGCTTGTG
GATGTCAATTTGGCGGAAGAAGGCATCCTGAGGCTGCTTTTTGTTGCAGC
TTACTTGATGTTTGATAAAATTAGTAATGATAATGAGGTTTCTGCGGCAT
CAAGGCTTTTGGCATTGGCCACCTGCTTTGCGACCAAAATGATACGGAAG
TATGGGTTGTTGCAGCATAGAAGTGATAACTTCATGACATGGAGTGTAAA
CAGAATAGAGGATTGTCATTTACCATTGTTACTGGAGAATGATTACAATG
AGAAGGAATACAATAAAATGGGAAACTCAAGTAGGCTTCATGAGATGGCT
CACTTTCTTGAAATCATAAGAAATCTACAATCTCGACTCAATTCTAAAAT
CAAAAGACCAGCTCAAAGTTCGGTGGATGCTCCGGATGCATCAAAGATAT
ATACAGATTTATCAAAGGATGAAACTGAGCTTCCAACAAATGAATCATCA
TATGAAAAGTTGAACCAGCATGAACTTCCTTTTCCTGGAGCTGATTTTGA
ATCTAGAGGTGTGAAGAAACTAGCTTCAATGTCTGCTGACCCCTTGGAGA
CAAGAACACATATGAACTCTGATAATACTAGTAGATCAACTGGGTCTGAT
TCTGCTATAGTCGTGTCAGGAAGGAAAGTTTTACCCTTGGAAAATACAAA
GGATATGATTGCGCGTTGGGAACTGGGTAATTTGGACCAGCGGAATGTTG
TTCAAGATGCTCTACTTTCTGGCCGTCTTCCTCTAGCTGTTCTCAAATTG
CATCTTCATCGAGCACACAATTTGATCGGTGACAAGGAGCCTCATGATAC
TTTTAGTGAAGTCCGTGACATTGGAAGAGCTATTGCTTATGATCTTTTTT
TAAAGGGTGAAACAGGATTAGCTGTAACAACATTGCAAAAGCTCGGTGAG
GATATTGAACTTTGTCTCAGACAATTAACTTTTGGCACTGTAAGAAGACC
ACTTCGGCTGCAGCTAGCTGCTGAGATGACAAAATATGGTTATATTGGAC
CATATGAGGGGGATATATTGGAGAGGATGTCACTCATTGAGAGGGTCTAC
CCTTGCAGTAATTTTTGCAGAACATATTGTGGCCGCAAGGAAGTCTTCTT
TCCAGATATTAACATCAGCTCACCTGAAGAAATTAGCTTGCATCTGCTGC
ATCCAACAGTTGATAACACTGTCCTTTTCTGTGGTGAGATCGATGGAGCT
GTATTAGGTTCCTGGAATGATGTGAGTGAACATCCTATAGTTCCTGTGCT
TGATGATGACAGTGCTCATTCTTGCTACTGGGCTGGAGCTGCAGTATGGT
CTGATGCATGGGATCAAAGAACTGTTGATCGGATAGTGCTGGATCAACCA
TTTCTAATGGGTGTTAATGTGTCATGGGAGTCTCAAATTGAGTACCACAT
ATGCCACAACGACTGGGTTGAAGTTTATGAACTCCTTGACGTGATTCCAT
CATATTTATTTTCCAATGGGACTATTCGAATCAGTTTGGATGGTTTACAC
CCAACTTCAGCTGTAGGATATAGTACAGAGTTCAGTAAATACAATAGCTA
CATAAGCTCAATTGAGGAGTTAGATGCTGTGTGCCTGGAAATTCCAGATA
TGAAAGTGATCAGATTTTCTTCATATAATATGTGCTCGACGTGGGTGAGA
TTGCTTATTAACCAGCGGCTTGCCAGAAGACTTATTTTTCCAAAGGAATA
CTGGGAAGGCACAGCAGAGATTGTTCGTCTTCTAGCTCGGTCAGGATACA
TGACTAACACATATGAAACCTCATCGTTAGATGATTCTGTCGAGGGTTCA
TCAGATTCAAATATTTTAAGTTTAAGTGGAACAGTGCATCCTGGAGCAGC
ACAACTTCTGCATAAAGTTGTTGTACATAACTGTGCTCAGTATAAATTGC
CGAACCTCCTCGATCTTTACCTTGATTACCACAAGTTGGCTCTGGATAAT
GCTTCTCTCTCGGTATTCCAAGATGCAGTGGGAGATGATCAAAGGGACAA
GTGGTTGCTCTTTCTAAGAGTTGAAGGGCATGAGTATGATGCGTCATTCG
CTAATGCCCGTTTTATTGCATCAAAAAGTATGGTTCCTGGTAATAGACTC
GGTGTTTGTGAGATTGATGACATTCTCTGTACTGTTGATGATATTGCTGA
AGGAGGAGGGGAGATTGCAGCCTTGGCAACCTTAATGTATGCGCCTATGC
CATTTGAGGATTGTTTATGCAGTGGAAGTATAATTAGGCACTCTAGCTCC
TCCGCACAATGTACACTGGAAAATCTTAGACCCGCTCTCCAGCGCTTCCC
TACACTGTGGAGGATGCTCGTGACAGCATGCTTTGGGCAAGATCCAACTT
GCAGTTATTTGAATCCCACTAGAAAAGAGTTTGTCAGTTCTCAGTTATCA
GACTATCTGAACTGGAGGGACAGCATCTTCTTCTCATCTAGTCATGACAC
TTCACTTCTACAGATGCTTCCTTCCTGGTTTTCTAAGTCCGTTCGCAGAT
TAATTAAACTCTATGTTCAGGGTCCTCTAGGGTGTCGATCATTATCTGGT
CTTCCCAGGGGAGAAACTTTGCCAGTGAAGGATATTGAGTATTTAGTTAA
TGCTAATGAGAATGTTGAGATAAGTGCCATGACCTGGGAAACTGCTATAC
ATAAACATGTTGAAGAGGAGTTCTATGCTTCATCAACTAAGGAAAGTGGA
CTTGGACTTGAGCATCACTTGCACAGAGGGCGTGCTTTGGCAGCTTTCAA
CCATCTTCTTTCTATTAGAGTTCAAAAGTTGAAGCCTGAAAATGTTCAAA
GAGTGCAATCTGGCAGTTCCGTACATGGGCAAACAAATGTTCAGTCAGAT
GTTCATACTCTACTTGCACCAATAACACAAAGCGAGGAGTCTATTCTAGC
ATCTGTCATGCCCCTTGCAGTGATGCATTTTCAGGATTCTTTATTGGTTG
CTTCATGTGCTTTTCTTTTAGAGCTATGTGGTTTGTCTGCCTACATGCTC
CGAATAGACATAGCAGCTCTGAGACGGATATCTTCTTTCTACAAGTCTAA
TGCTCAGTCTGACTACATACAACTGTCACCTTCAGGTTTAGCATTTGATC
CTATATCACCTGAAGATGATATTGCATATTCTCTTGGTCGAGTATTAGCA
GATGATTATGTGGACCGTGATAGTGCTGGAATCAAGAAAAAACCTGAAGT
CATAGGTAGCATTACCACCAAAAGACCTTCCAGAGCTCTCATGCTTGTCC
AACAGCATTTGGAGAAGGCCAGCTTGCCACTGTTGACTGATGGAATGACA
TGTGGTTCCTGGCTATCTAGCGGTAATGGTGATGGAACTGAGCTACGGTC
CCAGCAGAAAGATGCTAGCCTGTACTGGAGTTTAGTAACAACTTTTTGTA
GAGTGCATCAGATTCCCTTGAGCACTAACTACCTTGCTCTGTTAGCAAGA
GACAACGATTGGGTTGGATTTTTGTCAGAAGCTCAGGTTGGAGGATATCC
TTTTGATACAGTGATTGAAGTAGCATTAAAGGAATTCAATGACAATCGCC
TCAAACTTCACATACTTACAGTTTTGAAGGGGATGCAATCAAGAAAGAAA
GTTAGCACTTTGTCAAATTCTGATATTACAGAAGAAAGGAGTACTTCTGT
AGGAGATTTTTGTATGCCTGCTGAAGTCTTTGGAATCATTGCAGAGTGTG
AGAAGAGAGAAAATCCAGGAGAGGCTCTGCTGTTAAAAGCGAAGGATCTG
TGCTGGTCGATTTTGGCAATGATTGCATCATGTTTTCCTGACGTGTCTCC
GTTGTCCTGCCTAACAGTTTGGCTGGAAATTACTGCCGCCAGGGAAACTT
CATCTATCAAGGTGAATGATGTAGCATCCCAGATTGCGAGTAATGTTGGA
GCAGCTGTGGAGGCTACTAATGCTACGCTTGTAGCAAGTGGAGAAGTTGC
ATGTCACTATAATCGTAGAAATGCAAAACGTAGACGTATAATGGAGGCAG
TGGAACCCTTAATGTCGAAAGTATCTGATGTGTCTATTAGTAGGAGCGAG
GGAATAATTGCTGCCCAAGGTAGTGTTTTTGAAGATGATAAAAACCAAAC
TGGCGACGTTTTTTCCGTGTCTAATAATACAGCTGAACCATCTGTCTCTT
TATCGAAAATGGTTGCATTGCTTTGCGAACAACATCTATTTCTTCCTCTA
TTAAGAGCTTTTGAGATGTTCCTTCCTTCGTGCTCTCTCTTGCCATTTAT
CCGTGCTCTACAGGCATTCTCCCAGATGCGCTTGTCAGACGCTTCAGCAC
ATATAGGTTCATTCTCTGCTAGAATCAAGGAAGAACAGATCCATGTTCAA
ATGAACAATGGAACAGATGGTATTGGAAGTGCGTGGATAAGTTCAATTGC
TGTGAAAGCTGCTGACGCTATGCTTTCAAAATGCCCATCACCTTATGAAA
CGAGGTGTCTATTACAGCTTCTTTCTTCTGCTGACTTTGGTGATGGAGGA
TTCGCTTCAGCAAACTATAAGAGGCAGCACTGGAAAATTAATTTAGCAGA
ACCTTCACTGAGGGAAGATGATGGTTTACACCTTGGGGATGATATTCTAG
ATGATGTTTCACTTCTAAGAGCTTTAGAAGAGAATGGACACTGGGAGGAA
GCACGCAACTGGGCTATGCAGTTGGAGGCCACTGGTGGAAAATGGAAATG
TATTGGACACCATGTGACTGAAACCCAGGCCGAGTCCATGGTGGCAGAGT
GGAAGGAGTTTTTGTGGGATGTCCCAGAAGAGAGGGTTGCTCTTTGGGCC
CACTGCCAAACACTTTTCATCAGATATGCTTTTCCACCGTTACAGGCTGG
TTGTTTTTTTCTCAAACATGCAGAAGCTGTGGAGAAAGATCTACCTGCAA
GAGAGCTTCATGAACTTTTGCTTCTTTCTTTGCAATGGTTGAGTGGGATG
ATTACACATTCTGATCCAGCTTATCCGTTGCACCTTTTGCGAGAAATTGA
GACCAGAGTTTGGCTCCTGGCAGTAGAGTCAGAAGCTCATATAAAGAGTG
ATGGCGATTTCTCTCTAACCAGTTGTATTAGTGAACCTGGTACCGGAAAA
AGTTCCAACATTATTGAATGCACTGCATGTCTAATAGCAAAAATGGATAA
TCATATAAGTGCGATGAGAATTAAATCAACAGACAGTATTGACACAAGGG
AGATTAGCCATACACATCAAAAAATACCACAACTTACTAATGACAACAAT
TTACATGGTTCTAATGGTGGTATGAAGATAAAAAAGAAAGCCAAAGCATT
CTTGTCATCAAAACGGCAGATAGTTGACGTGGTGGAGAAAAATATTAATT
CTGAAGAAAGTTCAACATCTCTTGATTCTCAAAAGGACCTGCATCTGCCA
GATGAAAACCTTAGAATGGATGTATCTTCTTCAAGATGGGAGGAGAGGGT
TGGACCTGCGGAGTTGGAAAGGGCTGTTCTTTCTTTATTGGAGTTTGGAC
AAATTACAGCTGCGAAACAACTACAGCAGAAACTCTCCCCAGGAAAAATA
CCGTCTGAATTTGTTTTAGTTGATACTGCTTTAAAGCTTGCGGTCCTCTC
AACACCCAATAGTGAAGTGTCCATGTCAATGTTGGATGATGAACTAAGTT
CGGTTATACAGTCATACAATCTTGTGAATGATCGTTATATGGTTTATCCG
CTTCAGGTATTGGAGAATTTAGCAATCAGTTTCACTGAGGGTAGAGGATG
TGGTCTATGCAAAAGAATTATTTCTATTGTGAGGGCTGCCAATGTCTTGG
GTGTTCCATTTTCAGAGGCTTATGATAAGCAACCAGTTGAATTGCTGCAG
CTTTTGTCCCTTAAAGCACAAGATTCTTTTGATGAAGCGAATTTACTTGT
GCAGACTCACACTATGCCAGCTGCTAGTGTTGCACATATTCTTGCAGAAT
CTTTCCTAAAGGGCTTATTGGCTGCACACCGTGGGGGATATATGGATTCT
CAAAAGGAGGAAGGACCTGCTCCTCTACTTTGGAGATTTTCAGACTTCCT
TAAGTGGGCAAATCTCTGTCCATCAGAACCTGAAATTGGCCACGCTCTGA
TGCGATTAGTGATTACTGGGCAGGAAATACCGCATGCCTGTGAGGTCGAA
CTTCTTATTCTCTCCCACCACTTTTACAAGTCATCAGCCTGTCTTGATGG
AGTTGATGTTCTAGTAGCCCTTGCAGCCACCAGGGTTGAAGCTTATGTTT
TGGAAGGTGACTTTTCATGTTTGGCTCGCCTTATAACTGGTGTTGGGAAC
TTTCATGCCCTCAACTTCATACTGGGAATTCTTATTGAGAATGGGCAGCT
GGATCTTCTTCTTCAGAAGTATTCTGCTGCTGCAGACTCGAACTCCAGCA
CTGCTGAGGCCGTTAGAGGGTTTCGAATGGCTGTTCTGACATCACTGAAG
CAGTTTAATCCAAATGACCTTGATGCGTTTGCTATGGTTTATAATCATTT
TGACATGAAACACGAGACTGCTTCTCTTCTAGAGTCACGAGCTCAGCAAT
CATCTCAACAGTGGTTCTATCGGTACGACAAGGATCAGAATGAAGACCTC
CTGGAATCCATGCGCTATTACATTGAAGCGGCTGAAGTTCACTCCTCCAT
TGACGCTGGCAACAAAACACATGCTTCCTGTGCTCAGGCTTCCCTTGTGT
CCCTCCAGATTCGAATGCCAGATTTCAAGTGGCTAAAACTATCAGAAACT
AATGCCAGACGTGCTCTAGTTGAGCAATCCCGTTTTCAGGAGGCACTTAT
TGTTGCTGAGGCTTATGGTCTCAACCAACCTAGTGAATGGGCCTTGGTAC
TTTGGAATCAAATGCTCAAACCTGAACTAACAGAACAGTTTGTTGCTGAA
TTTGTTGCTGTGCTCCCTCTCCACCCAATGATGCTTGCAGAACTTGCACG
ATTTTATAGGGCTGAGGTTGCGGCGAGAGGGGACCAATCACAATTTTCAG
TTTGGCTAACAGGCGGAGGCCTGCCAGCAGAGTGGGCTAAATATCTTGAA
AGATCATTCAGATGTCTTCTGAAGAGGACTAGGGATTTGAAGCTCCGTTT
GCAACTTGCTACAATTGCAACTGGTTTTATCGACATAATTGACGTTCTGA
CAAAGGCATTAGATAGGGTCCCTGAGAACGCCGGGCCACTAGTGCTGAGG
AAGGGGCACGGTGGAGCTTACTTGCCACTAATGTAAATATGTTAAGATCG
GTGGCAGAAATATTTACAGAGTAAAAGATACTTTTTCCTTCACGGGATAA
TACAATTATGTTCTGACAAAGATAATCAATGCTTCCAATCTGTTGGCAAA
GTTGCAGGGTGTTGTACGCGAGATGAATGGAATGTAGTTCCTTCTTGACT
TTGTTTAGAGATATTGGTAGCTGGGTTTCCTATATTACGTGTAGCCTGTA
GGCGAGGCCAATTACAGAAGTCTTGGATGTCGTCATCTGCCTTTCCTTTA
CCACCAATTTTTACATGTGGTCAATGCATATAAATTTTGCTATCTTGATA
TGTTCGTATGCAAGATGTGTATATCATTCCTATAGGAGAAGTGTGAAGAC
AATTTATATAGAATTCATTGTTGTAACAAATATCAAAATACCATGAATGG
AGGATCTTTCCAACTTGATGCAATCCTTTCTACAGA

Sequence Length:

10336

Sequence Checksum:

80ac9dcc4655d11f917a8dc1d512616b

View location in JBrowse:

DCARv2_Chr5:6233030..6266936+

Protein Sequence:

MDAPALLQLHKWGPDVHLNVSQFREAFMSPTRHLLLLLSYQCEAMLLPLG
EGLASISASSSLEESFAPDRADSKVNIASTSESIKMVSDNSIPSDNHDLN
PSNHHPFISDVHSLAWGICEETYGSQDTALARDLLFVCGNHGVTVHVFAR
PSKDSEVTKPAMESEHRQGVWVEWGPSITPPCSKTAQKSSSLHVETSGEV
VKESKTDVIAREDGKLKNMSQKRWLRTFLTKPEMIKSEGIIYTMLPEMSS
LPSTTMINSFGLFGSDSKSSHFQTDTQPKSHIDGEKNDSVLDVVNNAYSH
GDSSSSGKVISPDALLKFLTGSISSSYICSTVFSSNSNHMIGFVLMLVDP
VPADPSDKHEIDEEKIVIVVAKMVSSGIQWVCLARLAEIVDRGPIVEWTD
FKFSDDFLICLNAVGLIYFYSATTGEYVAHLDLLQSNGFSPQFNYKDCEK
FQKGDDAPTSTGIEGEINGIQSSHDIPSKSIFRRLLLASHTTLLAVTDVH
GVVHVICVENHLQGKDHMLKKSLKSFQDFNMRTLVGWEVGGAEIGCQRTF
SDTWPSLLSVHKYYFTGNMGYNEFPGLQVFGEKTGGCKSVLSGFSVGSQT
VETEYPSSSFPRAVRNLFLPTQRSEEGNVLCFSAFGIIRLTKKKNKERCS
QIVCSSLHVGSATMNDLSTNSKGLDISIGEAVGCTYKGGCYLVTEDGLSV
VLPSMSVSSNFFPVEAIGHRQKTVSTAATASQAGILFETKEIKKQSFLPW
KIELLDRLLLYEDSEEADRLCLENGWDLKISRIRRLQLALDYLKFDEIEI
SLEKLVDVNLAEEGILRLLFVAAYLMFDKISNDNEVSAASRLLALATCFA
TKMIRKYGLLQHRSDNFMTWSVNRIEDCHLPLLLENDYNEKEYNKMGNSS
RLHEMAHFLEIIRNLQSRLNSKIKRPAQSSVDAPDASKIYTDLSKDETEL
PTNESSYEKLNQHELPFPGADFESRGVKKLASMSADPLETRTHMNSDNTS
RSTGSDSAIVVSGRKVLPLENTKDMIARWELGNLDQRNVVQDALLSGRLP
LAVLKLHLHRAHNLIGDKEPHDTFSEVRDIGRAIAYDLFLKGETGLAVTT
LQKLGEDIELCLRQLTFGTVRRPLRLQLAAEMTKYGYIGPYEGDILERMS
LIERVYPCSNFCRTYCGRKEVFFPDINISSPEEISLHLLHPTVDNTVLFC
GEIDGAVLGSWNDVSEHPIVPVLDDDSAHSCYWAGAAVWSDAWDQRTVDR
IVLDQPFLMGVNVSWESQIEYHICHNDWVEVYELLDVIPSYLFSNGTIRI
SLDGLHPTSAVGYSTEFSKYNSYISSIEELDAVCLEIPDMKVIRFSSYNM
CSTWVRLLINQRLARRLIFPKEYWEGTAEIVRLLARSGYMTNTYETSSLD
DSVEGSSDSNILSLSGTVHPGAAQLLHKVVVHNCAQYKLPNLLDLYLDYH
KLALDNASLSVFQDAVGDDQRDKWLLFLRVEGHEYDASFANARFIASKSM
VPGNRLGVCEIDDILCTVDDIAEGGGEIAALATLMYAPMPFEDCLCSGSI
IRHSSSSAQCTLENLRPALQRFPTLWRMLVTACFGQDPTCSYLNPTRKEF
VSSQLSDYLNWRDSIFFSSSHDTSLLQMLPSWFSKSVRRLIKLYVQGPLG
CRSLSGLPRGETLPVKDIEYLVNANENVEISAMTWETAIHKHVEEEFYAS
STKESGLGLEHHLHRGRALAAFNHLLSIRVQKLKPENVQRVQSGSSVHGQ
TNVQSDVHTLLAPITQSEESILASVMPLAVMHFQDSLLVASCAFLLELCG
LSAYMLRIDIAALRRISSFYKSNAQSDYIQLSPSGLAFDPISPEDDIAYS
LGRVLADDYVDRDSAGIKKKPEVIGSITTKRPSRALMLVQQHLEKASLPL
LTDGMTCGSWLSSGNGDGTELRSQQKDASLYWSLVTTFCRVHQIPLSTNY
LALLARDNDWVGFLSEAQVGGYPFDTVIEVALKEFNDNRLKLHILTVLKG
MQSRKKVSTLSNSDITEERSTSVGDFCMPAEVFGIIAECEKRENPGEALL
LKAKDLCWSILAMIASCFPDVSPLSCLTVWLEITAARETSSIKVNDVASQ
IASNVGAAVEATNATLVASGEVACHYNRRNAKRRRIMEAVEPLMSKVSDV
SISRSEGIIAAQGSVFEDDKNQTGDVFSVSNNTAEPSVSLSKMVALLCEQ
HLFLPLLRAFEMFLPSCSLLPFIRALQAFSQMRLSDASAHIGSFSARIKE
EQIHVQMNNGTDGIGSAWISSIAVKAADAMLSKCPSPYETRCLLQLLSSA
DFGDGGFASANYKRQHWKINLAEPSLREDDGLHLGDDILDDVSLLRALEE
NGHWEEARNWAMQLEATGGKWKCIGHHVTETQAESMVAEWKEFLWDVPEE
RVALWAHCQTLFIRYAFPPLQAGCFFLKHAEAVEKDLPARELHELLLLSL
QWLSGMITHSDPAYPLHLLREIETRVWLLAVESEAHIKSDGDFSLTSCIS
EPGTGKSSNIIECTACLIAKMDNHISAMRIKSTDSIDTREISHTHQKIPQ
LTNDNNLHGSNGGMKIKKKAKAFLSSKRQIVDVVEKNINSEESSTSLDSQ
KDLHLPDENLRMDVSSSRWEERVGPAELERAVLSLLEFGQITAAKQLQQK
LSPGKIPSEFVLVDTALKLAVLSTPNSEVSMSMLDDELSSVIQSYNLVND
RYMVYPLQVLENLAISFTEGRGCGLCKRIISIVRAANVLGVPFSEAYDKQ
PVELLQLLSLKAQDSFDEANLLVQTHTMPAASVAHILAESFLKGLLAAHR
GGYMDSQKEEGPAPLLWRFSDFLKWANLCPSEPEIGHALMRLVITGQEIP
HACEVELLILSHHFYKSSACLDGVDVLVALAATRVEAYVLEGDFSCLARL
ITGVGNFHALNFILGILIENGQLDLLLQKYSAAADSNSSTAEAVRGFRMA
VLTSLKQFNPNDLDAFAMVYNHFDMKHETASLLESRAQQSSQQWFYRYDK
DQNEDLLESMRYYIEAAEVHSSIDAGNKTHASCAQASLVSLQIRMPDFKW
LKLSETNARRALVEQSRFQEALIVAEAYGLNQPSEWALVLWNQMLKPELT
EQFVAEFVAVLPLHPMMLAELARFYRAEVAARGDQSQFSVWLTGGGLPAE
WAKYLERSFRCLLKRTRDLKLRLQLATIATGFIDIIDVLTKALDRVPENA
GPLVLRKGHGGAYLPLM

Relationship:

There are 2 relationships.
Relationships
The mRNA, XM_017396563.1, is a part of gene, LOC108222676.
The polypeptide, XM_017396563.1, derives from mRNA, XM_017396563.1.

Cross Reference:


NCBI Gene	108222676
NCBI Nuccore	XM_017396563.1

Gene:

LOC108222676

Model Evidence:

Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns

Gbkey:

mRNA