XM_017396564.1 | CarrotOmics

Resource Type:

mRNA

Name:

XM_017396564.1

Identifier:

XM_017396564.1

Organism:

Daucus carota subspecies sativus

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100	The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here.

Transcript Id:

XM_017396564.1

Product:

uncharacterized LOC108222676, transcript variant X2

Sequence:

CTTGTCAAAAAGAAGCAAGGCAGGGGTAGATGTGAAAGAGAAGGGGACGA
GAGTGTTTGGAAATCGGAATGGTGGCACAGCAATGGTCGTTAAACCAGGA
AAGCCAAACACGGCCCTAAGAAAATAGTTTTCAACTAAAATTACAGTCGG
AGATTGCAGAATCGTGATTTTTGAATCCGTCGTATCAACTAGTTCTATTC
ACTGAAGCTAATCTACTATCTTCTCAGTTATGGACGCTCCTGCTCTACTT
CAGTTGCACAAGTGGGGACCTGATGTGCATCTCAACGTATCGCAATTTCG
GGAGGCTTTTATGTCTCCCACCAGGCACCTACTGTTACTGCTTTCGTATC
AGTGCGAGGCTATGTTGCTTCCTCTTGGGGAAGGTCTAGCTTCGATTTCT
GCATCTTCTTCTTTGGAAGAGTCGTTTGCCCCTGATAGGGCAGATTCAAA
GGTGAATATTGCAAGTACCTCTGAATCAATCAAGATGGTATCTGATAATA
GTATACCTTCCGACAACCATGATCTCAATCCCAGTAATCATCATCCTTTT
ATTTCTGATGTACACTCACTTGCATGGGGTATTTGTGAAGAAACCTATGG
TAGCCAAGATACAGCTTTAGCTAGAGATCTTCTTTTTGTTTGCGGAAATC
ATGGAGTAACTGTCCATGTTTTTGCTCGACCCAGTAAAGACAGTGAAGTG
ACCAAACCAGCTATGGAGAGTGAGCATCGTCAAGGGGTATGGGTGGAGTG
GGGACCATCTATTACTCCACCATGCAGTAAGACAGCTCAAAAAAGTTCCA
GCTTGCATGTGGAAACCTCTGGCGAGGTAGTTAAGGAAAGTAAAACTGAT
GTAATTGCCAGGGAGGATGGGAAATTAAAAAATATGTCTCAAAAGAGATG
GTTGCGTACATTCCTAACCAAACCTGAAATGATAAAATCTGAAGGTATTA
TATATACCATGCTACCGGAGATGTCATCGCTACCTTCCACAACAATGATA
AATTCATTTGGGCTTTTTGGTAGTGATTCTAAATCTTCACACTTTCAGAC
TGATACGCAACCAAAATCTCATATAGATGGCGAAAAGAATGATTCAGTTT
TAGATGTTGTAAACAATGCATATTCACACGGGGATTCTAGTTCTTCCGGG
AAAGTAATTTCCCCTGATGCTCTTTTGAAGTTTTTGACTGGTAGTATAAG
TAGTTCATACATATGCTCTACAGTGTTCTCTAGCAACTCAAACCACATGA
TTGGGTTTGTTTTGATGTTAGTTGATCCTGTACCCGCTGACCCCAGTGAT
AAACATGAAATAGATGAAGAAAAAATTGTTATTGTCGTGGCTAAAATGGT
CAGCTCTGGAATACAGTGGGTTTGCTTGGCAAGGCTTGCTGAGATTGTAG
ACAGAGGCCCTATAGTTGAATGGACAGACTTCAAATTTTCAGATGATTTT
CTCATTTGTCTTAATGCAGTTGGTCTAATATACTTCTACTCAGCTACAAC
CGGTGAATATGTAGCACATCTGGATCTCTTACAAAGCAATGGTTTTTCTC
CTCAATTTAATTATAAAGATTGTGAAAAGTTTCAAAAAGGTGATGATGCC
CCCACTAGTACTGGCATTGAAGGTGAAATCAATGGTATCCAATCCTCTCA
TGATATTCCTAGCAAAAGTATATTTAGGAGACTGCTACTTGCATCGCACA
CCACACTCTTGGCCGTAACAGATGTGCATGGTGTAGTTCATGTAATATGT
GTTGAAAATCATTTACAAGGGAAAGATCACATGCTTAAGAAATCACTTAA
AAGTTTTCAGGATTTTAATATGAGGACTTTGGTTGGTTGGGAGGTTGGTG
GGGCTGAAATTGGCTGTCAGAGGACGTTTTCTGATACATGGCCATCCTTG
CTATCAGTTCATAAATATTATTTTACAGGTAACATGGGCTACAATGAATT
TCCTGGGCTTCAGGTTTTTGGGGAAAAAACAGGTGGTTGTAAGTCAGTAC
TTAGTGGTTTCTCGGTTGGATCCCAAACAGTTGAAACAGAATATCCTTCC
TCTTCATTTCCTCGTGCTGTAAGGAATCTTTTTCTTCCTACCCAAAGATC
TGAAGAAGGCAATGTACTTTGTTTTTCTGCCTTTGGAATTATAAGACTTA
CTAAAAAGAAAAATAAAGAGAGGTGTTCCCAGATTGTTTGTTCCAGTTTG
CATGTAGGTTCAGCTACAATGAATGATTTAAGCACGAATTCGAAAGGTTT
GGATATTTCTATAGGCGAAGCTGTAGGTTGTACCTATAAAGGTGGTTGTT
ATTTGGTGACTGAAGATGGTCTATCAGTAGTTCTTCCATCCATGTCAGTT
TCTTCTAATTTCTTTCCTGTTGAAGCTATTGGTCATCGACAGAAAACTGT
CAGTACTGCTGCTACTGCTTCCCAAGCTGGGATCCTCTTTGAAACCAAAG
AAATCAAAAAGCAGTCTTTTCTTCCCTGGAAAATAGAGCTGTTGGATCGG
CTACTCTTATACGAGGACTCTGAAGAGGCAGATCGCTTGTGCTTGGAAAA
TGGCTGGGACTTGAAAATATCTCGAATTCGCCGCTTGCAACTGGCTTTGG
ACTACCTGAAATTTGACGAGATTGAGATTTCATTAGAGAAGCTTGTGGAT
GTCAATTTGGCGGAAGAAGGCATCCTGAGGCTGCTTTTTGTTGCAGCTTA
CTTGATGTTTGATAAAATTAGTAATGATAATGAGGTTTCTGCGGCATCAA
GGCTTTTGGCATTGGCCACCTGCTTTGCGACCAAAATGATACGGAAGTAT
GGGTTGTTGCAGCATAGAAGTGATAACTTCATGACATGGAGTGTAAACAG
AATAGAGGATTGTCATTTACCATTGTTACTGGAGAATGATTACAATGAGA
AGGAATACAATAAAATGGGAAACTCAAGTAGGCTTCATGAGATGGCTCAC
TTTCTTGAAATCATAAGAAATCTACAATCTCGACTCAATTCTAAAATCAA
AAGACCAGCTCAAAGTTCGGTGGATGCTCCGGATGCATCAAAGATATATA
CAGATTTATCAAAGGATGAAACTGAGCTTCCAACAAATGAATCATCATAT
GAAAAGTTGAACCAGCATGAACTTCCTTTTCCTGGAGCTGATTTTGAATC
TAGAGGTGTGAAGAAACTAGCTTCAATGTCTGCTGACCCCTTGGAGACAA
GAACACATATGAACTCTGATAATACTAGTAGATCAACTGGGTCTGATTCT
GCTATAGTCGTGTCAGGAAGGAAAGTTTTACCCTTGGAAAATACAAAGGA
TATGATTGCGCGTTGGGAACTGGGTAATTTGGACCAGCGGAATGTTGTTC
AAGATGCTCTACTTTCTGGCCGTCTTCCTCTAGCTGTTCTCAAATTGCAT
CTTCATCGAGCACACAATTTGATCGGTGACAAGGAGCCTCATGATACTTT
TAGTGAAGTCCGTGACATTGGAAGAGCTATTGCTTATGATCTTTTTTTAA
AGGGTGAAACAGGATTAGCTGTAACAACATTGCAAAAGCTCGGTGAGGAT
ATTGAACTTTGTCTCAGACAATTAACTTTTGGCACTGTAAGAAGACCACT
TCGGCTGCAGCTAGCTGCTGAGATGACAAAATATGGTTATATTGGACCAT
ATGAGGGGGATATATTGGAGAGGATGTCACTCATTGAGAGGGTCTACCCT
TGCAGTAATTTTTGCAGAACATATTGTGGCCGCAAGGAAGTCTTCTTTCC
AGATATTAACATCAGCTCACCTGAAGAAATTAGCTTGCATCTGCTGCATC
CAACAGTTGATAACACTGTCCTTTTCTGTGGTGAGATCGATGGAGCTGTA
TTAGGTTCCTGGAATGATGTGAGTGAACATCCTATAGTTCCTGTGCTTGA
TGATGACAGTGCTCATTCTTGCTACTGGGCTGGAGCTGCAGTATGGTCTG
ATGCATGGGATCAAAGAACTGTTGATCGGATAGTGCTGGATCAACCATTT
CTAATGGGTGTTAATGTGTCATGGGAGTCTCAAATTGAGTACCACATATG
CCACAACGACTGGGTTGAAGTTTATGAACTCCTTGACGTGATTCCATCAT
ATTTATTTTCCAATGGGACTATTCGAATCAGTTTGGATGGTTTACACCCA
ACTTCAGCTGTAGGATATAGTACAGAGTTCAGTAAATACAATAGCTACAT
AAGCTCAATTGAGGAGTTAGATGCTGTGTGCCTGGAAATTCCAGATATGA
AAGTGATCAGATTTTCTTCATATAATATGTGCTCGACGTGGGTGAGATTG
CTTATTAACCAGCGGCTTGCCAGAAGACTTATTTTTCCAAAGGAATACTG
GGAAGGCACAGCAGAGATTGTTCGTCTTCTAGCTCGGTCAGGATACATGA
CTAACACATATGAAACCTCATCGTTAGATGATTCTGTCGAGGGTTCATCA
GATTCAAATATTTTAAGTTTAAGTGGAACAGTGCATCCTGGAGCAGCACA
ACTTCTGCATAAAGTTGTTGTACATAACTGTGCTCAGTATAAATTGCCGA
ACCTCCTCGATCTTTACCTTGATTACCACAAGTTGGCTCTGGATAATGCT
TCTCTCTCGGTATTCCAAGATGCAGTGGGAGATGATCAAAGGGACAAGTG
GTTGCTCTTTCTAAGAGTTGAAGGGCATGAGTATGATGCGTCATTCGCTA
ATGCCCGTTTTATTGCATCAAAAAGTATGGTTCCTGGTAATAGACTCGGT
GTTTGTGAGATTGATGACATTCTCTGTACTGTTGATGATATTGCTGAAGG
AGGAGGGGAGATTGCAGCCTTGGCAACCTTAATGTATGCGCCTATGCCAT
TTGAGGATTGTTTATGCAGTGGAAGTATAATTAGGCACTCTAGCTCCTCC
GCACAATGTACACTGGAAAATCTTAGACCCGCTCTCCAGCGCTTCCCTAC
ACTGTGGAGGATGCTCGTGACAGCATGCTTTGGGCAAGATCCAACTTGCA
GTTATTTGAATCCCACTAGAAAAGAGTTTGTCAGTTCTCAGTTATCAGAC
TATCTGAACTGGAGGGACAGCATCTTCTTCTCATCTAGTCATGACACTTC
ACTTCTACAGATGCTTCCTTCCTGGTTTTCTAAGTCCGTTCGCAGATTAA
TTAAACTCTATGTTCAGGGTCCTCTAGGGTGTCGATCATTATCTGGTCTT
CCCAGGGGAGAAACTTTGCCAGTGAAGGATATTGAGTATTTAGTTAATGC
TAATGAGAATGTTGAGATAAGTGCCATGACCTGGGAAACTGCTATACATA
AACATGTTGAAGAGGAGTTCTATGCTTCATCAACTAAGGAAAGTGGACTT
GGACTTGAGCATCACTTGCACAGAGGGCGTGCTTTGGCAGCTTTCAACCA
TCTTCTTTCTATTAGAGTTCAAAAGTTGAAGCCTGAAAATGTTCAAAGAG
TGCAATCTGGCAGTTCCGTACATGGGCAAACAAATGTTCAGTCAGATGTT
CATACTCTACTTGCACCAATAACACAAAGCGAGGAGTCTATTCTAGCATC
TGTCATGCCCCTTGCAGTGATGCATTTTCAGGATTCTTTATTGGTTGCTT
CATGTGCTTTTCTTTTAGAGCTATGTGGTTTGTCTGCCTACATGCTCCGA
ATAGACATAGCAGCTCTGAGACGGATATCTTCTTTCTACAAGTCTAATGC
TCAGTCTGACTACATACAACTGTCACCTTCAGGTTTAGCATTTGATCCTA
TATCACCTGAAGATGATATTGCATATTCTCTTGGTCGAGTATTAGCAGAT
GATTATGTGGACCGTGATAGTGCTGGAATCAAGAAAAAACCTGAAGTCAT
AGGTAGCATTACCACCAAAAGACCTTCCAGAGCTCTCATGCTTGTCCAAC
AGCATTTGGAGAAGGCCAGCTTGCCACTGTTGACTGATGGAATGACATGT
GGTTCCTGGCTATCTAGCGGTAATGGTGATGGAACTGAGCTACGGTCCCA
GCAGAAAGATGCTAGCCTGTACTGGAGTTTAGTAACAACTTTTTGTAGAG
TGCATCAGATTCCCTTGAGCACTAACTACCTTGCTCTGTTAGCAAGAGAC
AACGATTGGGTTGGATTTTTGTCAGAAGCTCAGGTTGGAGGATATCCTTT
TGATACAGTGATTGAAGTAGCATTAAAGGAATTCAATGACAATCGCCTCA
AACTTCACATACTTACAGTTTTGAAGGGGATGCAATCAAGAAAGAAAGTT
AGCACTTTGTCAAATTCTGATATTACAGAAGAAAGGAGTACTTCTGTAGG
AGATTTTTGTATGCCTGCTGAAGTCTTTGGAATCATTGCAGAGTGTGAGA
AGAGAGAAAATCCAGGAGAGGCTCTGCTGTTAAAAGCGAAGGATCTGTGC
TGGTCGATTTTGGCAATGATTGCATCATGTTTTCCTGACGTGTCTCCGTT
GTCCTGCCTAACAGTTTGGCTGGAAATTACTGCCGCCAGGGAAACTTCAT
CTATCAAGGTGAATGATGTAGCATCCCAGATTGCGAGTAATGTTGGAGCA
GCTGTGGAGGCTACTAATGCTACGCTTGTAGCAAGTGGAGAAGTTGCATG
TCACTATAATCGTAGAAATGCAAAACGTAGACGTATAATGGAGGCAGTGG
AACCCTTAATGTCGAAAGTATCTGATGTGTCTATTAGTAGGAGCGAGGGA
ATAATTGCTGCCCAAGGTAGTGTTTTTGAAGATGATAAAAACCAAACTGG
CGACGTTTTTTCCGTGTCTAATAATACAGCTGAACCATCTGTCTCTTTAT
CGAAAATGGTTGCATTGCTTTGCGAACAACATCTATTTCTTCCTCTATTA
AGAGCTTTTGAGATGTTCCTTCCTTCGTGCTCTCTCTTGCCATTTATCCG
TGCTCTACAGGCATTCTCCCAGATGCGCTTGTCAGACGCTTCAGCACATA
TAGGTTCATTCTCTGCTAGAATCAAGGAAGAACAGATCCATGTTCAAATG
AACAATGGAACAGATGGTATTGGAAGTGCGTGGATAAGTTCAATTGCTGT
GAAAGCTGCTGACGCTATGCTTTCAAAATGCCCATCACCTTATGAAACGA
GGTGTCTATTACAGCTTCTTTCTTCTGCTGACTTTGGTGATGGAGGATTC
GCTTCAGCAAACTATAAGAGGCAGCACTGGAAAATTAATTTAGCAGAACC
TTCACTGAGGGAAGATGATGGTTTACACCTTGGGGATGATATTCTAGATG
ATGTTTCACTTCTAAGAGCTTTAGAAGAGAATGGACACTGGGAGGAAGCA
CGCAACTGGGCTATGCAGTTGGAGGCCACTGGTGGAAAATGGAAATGTAT
TGGACACCATGTGACTGAAACCCAGGCCGAGTCCATGGTGGCAGAGTGGA
AGGAGTTTTTGTGGGATGTCCCAGAAGAGAGGGTTGCTCTTTGGGCCCAC
TGCCAAACACTTTTCATCAGATATGCTTTTCCACCGTTACAGGCTGGTTG
TTTTTTTCTCAAACATGCAGAAGCTGTGGAGAAAGATCTACCTGCAAGAG
AGCTTCATGAACTTTTGCTTCTTTCTTTGCAATGGTTGAGTGGGATGATT
ACACATTCTGATCCAGCTTATCCGTTGCACCTTTTGCGAGAAATTGAGAC
CAGAGTTTGGCTCCTGGCAGTAGAGTCAGAAGCTCATATAAAGAGTGATG
GCGATTTCTCTCTAACCAGTTGTATTAGTGAACCTGGTACCGGAAAAAGT
TCCAACATTATTGAATGCACTGCATGTCTAATAGCAAAAATGGATAATCA
TATAAGTGCGATGAGAATTAAATCAACAGACAGTATTGACACAAGGGAGA
TTAGCCATACACATCAAAAAATACCACAACTTACTAATGACAACAATTTA
CATGGTTCTAATGGTGGTATGAAGATAAAAAAGAAAGCCAAAGCATTCTT
GTCATCAAAACGGCAGATAGTTGACGTGGTGGAGAAAAATATTAATTCTG
AAGAAAGTTCAACATCTCTTGATTCTCAAAAGGACCTGCATCTGCCAGAT
GAAAACCTTAGAATGGATGTATCTTCTTCAAGATGGGAGGAGAGGGTTGG
ACCTGCGGAGTTGGAAAGGGCTGTTCTTTCTTTATTGGAGTTTGGACAAA
TTACAGCTGCGAAACAACTACAGCAGAAACTCTCCCCAGGAAAAATACCG
TCTGAATTTGTTTTAGTTGATACTGCTTTAAAGCTTGCGGTCCTCTCAAC
ACCCAATAGTGAAGTGTCCATGTCAATGTTGGATGATGAACTAAGTTCGG
TTATACAGTCATACAATCTTGTGAATGATCGTTATATGGTTTATCCGCTT
CAGGTATTGGAGAATTTAGCAATCAGTTTCACTGAGGGTAGAGGATGTGG
TCTATGCAAAAGAATTATTTCTATTGTGAGGGCTGCCAATGTCTTGGGTG
TTCCATTTTCAGAGGCTTATGATAAGCAACCAGTTGAATTGCTGCAGCTT
TTGTCCCTTAAAGCACAAGATTCTTTTGATGAAGCGAATTTACTTGTGCA
GACTCACACTATGCCAGCTGCTAGTGTTGCACATATTCTTGCAGAATCTT
TCCTAAAGGGCTTATTGGCTGCACACCGTGGGGGATATATGGATTCTCAA
AAGGAGGAAGGACCTGCTCCTCTACTTTGGAGATTTTCAGACTTCCTTAA
GTGGGCAAATCTCTGTCCATCAGAACCTGAAATTGGCCACGCTCTGATGC
GATTAGTGATTACTGGGCAGGAAATACCGCATGCCTGTGAGGTCGAACTT
CTTATTCTCTCCCACCACTTTTACAAGTCATCAGCCTGTCTTGATGGAGT
TGATGTTCTAGTAGCCCTTGCAGCCACCAGGGTTGAAGCTTATGTTTTGG
AAGGTGACTTTTCATGTTTGGCTCGCCTTATAACTGGTGTTGGGAACTTT
CATGCCCTCAACTTCATACTGGGAATTCTTATTGAGAATGGGCAGCTGGA
TCTTCTTCTTCAGAAGTATTCTGCTGCTGCAGACTCGAACTCCAGCACTG
CTGAGGCCGTTAGAGGGTTTCGAATGGCTGTTCTGACATCACTGAAGCAG
TTTAATCCAAATGACCTTGATGCGTTTGCTATGGTTTATAATCATTTTGA
CATGAAACACGAGACTGCTTCTCTTCTAGAGTCACGAGCTCAGCAATCAT
CTCAACAGTGGTTCTATCGGTACGACAAGGATCAGAATGAAGACCTCCTG
GAATCCATGCGCTATTACATTGAAGCGGCTGAAGTTCACTCCTCCATTGA
CGCTGGCAACAAAACACATGCTTCCTGTGCTCAGGCTTCCCTTGTGTCCC
TCCAGATTCGAATGCCAGATTTCAAGTGGCTAAAACTATCAGAAACTAAT
GCCAGACGTGCTCTAGTTGAGCAATCCCGTTTTCAGGAGGCACTTATTGT
TGCTGAGGCTTATGGTCTCAACCAACCTAGTGAATGGGCCTTGGTACTTT
GGAATCAAATGCTCAAACCTGAACTAACAGAACAGTTTGTTGCTGAATTT
GTTGCTGTGCTCCCTCTCCACCCAATGATGCTTGCAGAACTTGCACGATT
TTATAGGGCTGAGGTTGCGGCGAGAGGGGACCAATCACAATTTTCAGTTT
GGCTAACAGGCGGAGGCCTGCCAGCAGAGTGGGCTAAATATCTTGAAAGA
TCATTCAGATGTCTTCTGAAGAGGACTAGGGATTTGAAGCTCCGTTTGCA
ACTTGCTACAATTGCAACTGGTTTTATCGACATAATTGACGTTCTGACAA
AGGCATTAGATAGGGTCCCTGAGAACGCCGGGCCACTAGTGCTGAGGAAG
GGGCACGGTGGAGCTTACTTGCCACTAATGTAAATATGTTAAGATCGGTG
GCAGAAATATTTACAGAGTAAAAGATACTTTTTCCTTCACGGGATAATAC
AATTATGTTCTGACAAAGATAATCAATGCTTCCAATCTGTTGGCAAAGTT
GCAGGGTGTTGTACGCGAGATGAATGGAATGTAGTTCCTTCTTGACTTTG
TTTAGAGATATTGGTAGCTGGGTTTCCTATATTACGTGTAGCCTGTAGGC
GAGGCCAATTACAGAAGTCTTGGATGTCGTCATCTGCCTTTCCTTTACCA
CCAATTTTTACATGTGGTCAATGCATATAAATTTTGCTATCTTGATATGT
TCGTATGCAAGATGTGTATATCATTCCTATAGGAGAAGTGTGAAGACAAT
TTATATAGAATTCATTGTTGTAACAAATATCAAAATACCATGAATGGAGG
ATCTTTCCAACTTGATGCAATCCTTTCTACAGA

Sequence Length:

10333

Sequence Checksum:

48b05d44a3da70f86b71c237424e6844

View location in JBrowse:

DCARv2_Chr5:6233030..6266936+

Protein Sequence:

MDAPALLQLHKWGPDVHLNVSQFREAFMSPTRHLLLLLSYQCEAMLLPLG
EGLASISASSSLEESFAPDRADSKVNIASTSESIKMVSDNSIPSDNHDLN
PSNHHPFISDVHSLAWGICEETYGSQDTALARDLLFVCGNHGVTVHVFAR
PSKDSEVTKPAMESEHRQGVWVEWGPSITPPCSKTAQKSSSLHVETSGEV
VKESKTDVIAREDGKLKNMSQKRWLRTFLTKPEMIKSEGIIYTMLPEMSS
LPSTTMINSFGLFGSDSKSSHFQTDTQPKSHIDGEKNDSVLDVVNNAYSH
GDSSSSGKVISPDALLKFLTGSISSSYICSTVFSSNSNHMIGFVLMLVDP
VPADPSDKHEIDEEKIVIVVAKMVSSGIQWVCLARLAEIVDRGPIVEWTD
FKFSDDFLICLNAVGLIYFYSATTGEYVAHLDLLQSNGFSPQFNYKDCEK
FQKGDDAPTSTGIEGEINGIQSSHDIPSKSIFRRLLLASHTTLLAVTDVH
GVVHVICVENHLQGKDHMLKKSLKSFQDFNMRTLVGWEVGGAEIGCQRTF
SDTWPSLLSVHKYYFTGNMGYNEFPGLQVFGEKTGGCKSVLSGFSVGSQT
VETEYPSSSFPRAVRNLFLPTQRSEEGNVLCFSAFGIIRLTKKKNKERCS
QIVCSSLHVGSATMNDLSTNSKGLDISIGEAVGCTYKGGCYLVTEDGLSV
VLPSMSVSSNFFPVEAIGHRQKTVSTAATASQAGILFETKEIKKQSFLPW
KIELLDRLLLYEDSEEADRLCLENGWDLKISRIRRLQLALDYLKFDEIEI
SLEKLVDVNLAEEGILRLLFVAAYLMFDKISNDNEVSAASRLLALATCFA
TKMIRKYGLLQHRSDNFMTWSVNRIEDCHLPLLLENDYNEKEYNKMGNSS
RLHEMAHFLEIIRNLQSRLNSKIKRPAQSSVDAPDASKIYTDLSKDETEL
PTNESSYEKLNQHELPFPGADFESRGVKKLASMSADPLETRTHMNSDNTS
RSTGSDSAIVVSGRKVLPLENTKDMIARWELGNLDQRNVVQDALLSGRLP
LAVLKLHLHRAHNLIGDKEPHDTFSEVRDIGRAIAYDLFLKGETGLAVTT
LQKLGEDIELCLRQLTFGTVRRPLRLQLAAEMTKYGYIGPYEGDILERMS
LIERVYPCSNFCRTYCGRKEVFFPDINISSPEEISLHLLHPTVDNTVLFC
GEIDGAVLGSWNDVSEHPIVPVLDDDSAHSCYWAGAAVWSDAWDQRTVDR
IVLDQPFLMGVNVSWESQIEYHICHNDWVEVYELLDVIPSYLFSNGTIRI
SLDGLHPTSAVGYSTEFSKYNSYISSIEELDAVCLEIPDMKVIRFSSYNM
CSTWVRLLINQRLARRLIFPKEYWEGTAEIVRLLARSGYMTNTYETSSLD
DSVEGSSDSNILSLSGTVHPGAAQLLHKVVVHNCAQYKLPNLLDLYLDYH
KLALDNASLSVFQDAVGDDQRDKWLLFLRVEGHEYDASFANARFIASKSM
VPGNRLGVCEIDDILCTVDDIAEGGGEIAALATLMYAPMPFEDCLCSGSI
IRHSSSSAQCTLENLRPALQRFPTLWRMLVTACFGQDPTCSYLNPTRKEF
VSSQLSDYLNWRDSIFFSSSHDTSLLQMLPSWFSKSVRRLIKLYVQGPLG
CRSLSGLPRGETLPVKDIEYLVNANENVEISAMTWETAIHKHVEEEFYAS
STKESGLGLEHHLHRGRALAAFNHLLSIRVQKLKPENVQRVQSGSSVHGQ
TNVQSDVHTLLAPITQSEESILASVMPLAVMHFQDSLLVASCAFLLELCG
LSAYMLRIDIAALRRISSFYKSNAQSDYIQLSPSGLAFDPISPEDDIAYS
LGRVLADDYVDRDSAGIKKKPEVIGSITTKRPSRALMLVQQHLEKASLPL
LTDGMTCGSWLSSGNGDGTELRSQQKDASLYWSLVTTFCRVHQIPLSTNY
LALLARDNDWVGFLSEAQVGGYPFDTVIEVALKEFNDNRLKLHILTVLKG
MQSRKKVSTLSNSDITEERSTSVGDFCMPAEVFGIIAECEKRENPGEALL
LKAKDLCWSILAMIASCFPDVSPLSCLTVWLEITAARETSSIKVNDVASQ
IASNVGAAVEATNATLVASGEVACHYNRRNAKRRRIMEAVEPLMSKVSDV
SISRSEGIIAAQGSVFEDDKNQTGDVFSVSNNTAEPSVSLSKMVALLCEQ
HLFLPLLRAFEMFLPSCSLLPFIRALQAFSQMRLSDASAHIGSFSARIKE
EQIHVQMNNGTDGIGSAWISSIAVKAADAMLSKCPSPYETRCLLQLLSSA
DFGDGGFASANYKRQHWKINLAEPSLREDDGLHLGDDILDDVSLLRALEE
NGHWEEARNWAMQLEATGGKWKCIGHHVTETQAESMVAEWKEFLWDVPEE
RVALWAHCQTLFIRYAFPPLQAGCFFLKHAEAVEKDLPARELHELLLLSL
QWLSGMITHSDPAYPLHLLREIETRVWLLAVESEAHIKSDGDFSLTSCIS
EPGTGKSSNIIECTACLIAKMDNHISAMRIKSTDSIDTREISHTHQKIPQ
LTNDNNLHGSNGGMKIKKKAKAFLSSKRQIVDVVEKNINSEESSTSLDSQ
KDLHLPDENLRMDVSSSRWEERVGPAELERAVLSLLEFGQITAAKQLQQK
LSPGKIPSEFVLVDTALKLAVLSTPNSEVSMSMLDDELSSVIQSYNLVND
RYMVYPLQVLENLAISFTEGRGCGLCKRIISIVRAANVLGVPFSEAYDKQ
PVELLQLLSLKAQDSFDEANLLVQTHTMPAASVAHILAESFLKGLLAAHR
GGYMDSQKEEGPAPLLWRFSDFLKWANLCPSEPEIGHALMRLVITGQEIP
HACEVELLILSHHFYKSSACLDGVDVLVALAATRVEAYVLEGDFSCLARL
ITGVGNFHALNFILGILIENGQLDLLLQKYSAAADSNSSTAEAVRGFRMA
VLTSLKQFNPNDLDAFAMVYNHFDMKHETASLLESRAQQSSQQWFYRYDK
DQNEDLLESMRYYIEAAEVHSSIDAGNKTHASCAQASLVSLQIRMPDFKW
LKLSETNARRALVEQSRFQEALIVAEAYGLNQPSEWALVLWNQMLKPELT
EQFVAEFVAVLPLHPMMLAELARFYRAEVAARGDQSQFSVWLTGGGLPAE
WAKYLERSFRCLLKRTRDLKLRLQLATIATGFIDIIDVLTKALDRVPENA
GPLVLRKGHGGAYLPLM

Relationship:

There are 2 relationships.
Relationships
The mRNA, XM_017396564.1, is a part of gene, LOC108222676.
The polypeptide, XM_017396564.1, derives from mRNA, XM_017396564.1.

Cross Reference:


NCBI Gene	108222676
NCBI Nuccore	XM_017396564.1

Gene:

LOC108222676

Model Evidence:

Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns

Gbkey:

mRNA