XM_017362727.1 | CarrotOmics

Resource Type:

mRNA

Name:

XM_017362727.1

Identifier:

XM_017362727.1

Organism:

Daucus carota subspecies sativus

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100	The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here.

Transcript Id:

XM_017362727.1

Product:

uncharacterized LOC108195777, transcript variant X2

Sequence:

CTGACAAGTACATCGTATTGTTGCAGTCCTCCTGACACGAACAACATATA
CTTACACACATACTTACAAAACAACCACCTCAACCGGACTTGCGAAAATG
AACTGGGATCAGCTCTTTTCCTAGTTTTCTTAAGGATTGAATCCAGCTTT
CTGTCATCATGTTCGAAGCGCACGTTTTGCATCTGCTTCGAAGATATTTG
GGTGAATATGTTCATGGTCTTTCAGCAGAGGCTTTGAGGATTAGTGTATG
GAAAGGCGATGTGGTTCTTAAAGACTTAAAATTGAAAGCCGAGGCCCTTA
ATTCACTGCAACTTCCTCTTACCGTCAAAGCTGGATTTATTGGCACAATA
ACGCTCAAGGTTCCTTGGAAAAGTCTCGGAAAGGAACCTGTAATTGTGCT
CATTGATCGTGTGTTTGTTCTTGCTCGTCCTGCACCTGATGCGAGGTCTG
TAAAGGAGGAGGATCGAGAAAAACTTTTTGAAGCAAAGCTTCAACAGATT
GAGGAAGCTGAATCAGCGACACTTGAAGCGATTTCAAGATCAAAAGTTGG
AAGTTCACCAGCAGGAAATTCATGGCTGGGTTCGTTGATTGCTACAATAA
TTGGGAATCTGAAGATAACCATTAGCAACGTACATGTCAGATACGAGGAC
TCTACAAGCAATCCTGGACATTCATTTGCTTGTGGTGTTACTTTGGCAAA
GCTTGCTGCGGTTACGATGGATGAGCAAGGAAATGAAACGTTTGATACCA
GTGGCGCTCTAGATAAGTTGCGAAAGTCTGTGCAATTGGGAAGGCTTGCT
ATGTACCACGATTCCAACCAGCTCCCATGGAGCTTGGATAAGAAATGGGA
AGATCTTACTCCTAGAGATTGGACTGAGATTTTTGAAGATGGTATTAATG
AATCTGGCGAAGGTGGGGAAACAGTGTCTAAATGGGCGCAGGATCGCAAT
TATCTAGTTTCACCTATCAACGGAGACCTCAAGTATCACCGATTAGGCAA
TCAAGAGAAGAGTAATCTTGATGAGCCATCAGAGAAGGTTTCTCTGATCC
TTAGTGATGTGTCCCTAACAATCACCGAGGCTCAGTATCATGATTGGATT
AGACTCTTTGAGGTTTTCTCAAGATACAAGGCATATCTCGAGGTTTCTCA
TATCAGACCAGTGGTGCCAGTTTTAGAAAACCCCAAGGCTTGGTGGCGTT
ATGCTGCTCAAGCTAGTCTGCAGCAGAAGAGAATTTGCTACAGATTCTCT
TGGGACCAGGTTCAATCTCTGTGTCATTTGCGTCGACGGTACATTCAGTT
GTATGCTAGTTCTCTGCAGAAGATGTCAAATGTTGATAACAAAGAAATTA
GAGACATAGAGAAGGATCTTGATCCCAAAGTAATTCTTTTGTGGAGGTTT
CTTGCTCATGCCAAAGCTGAATCTGTAAGATCTAAGGAAGAAGCTGAGCG
GAGGTTGTCAAAAATGAAAAGCTGGTTTTCATTTAATTGGCGTGCGCCTT
CTGAAGACACCCTTGTAGAGGAGACTTCTGATGCACAAATGATAGAGGAG
AGATTAACTAAAGAAGAATGGCAGGCAATTAATAATTTACTAAGCTACCA
GCCTGATGAGGAATTGAATTTTGGTTCGGGGAAGGATATGCAAAATACAA
CACACTATTTGATTAACGTATCAGTTAGTCGTGCTGCTGCCAAGATTGTG
AATATTAGTCAGATAGAGATTGTTTATGGTAGATTCGAGCAACTTCATGT
GTCCACGAAATTAAAGCATCGAAGTACTCATTGTGATTTGACACTGAAAT
ATTATGGCGTGTCTGCACCAGAAGGTTCACTTGCCCAGAGTGGTTATGAT
GAGCAGAATTTGAATGCATTAGCTGCTACCTTTGTGTACTTACCGATTGG
GGAAAATGTTGATTGGCGGCTTTCAGCAACAATTACCCCTTGCCATGCCA
CAGTTTACATGGAAAGTTATGATCGTTTTTTTGAATTTTTGAAAAGAAGT
AAAGCCATTAGCCCGACAATTGCATTGGAAACTGCCGCTGCTCTGCAGAA
TAAGATTGAGGAGGTGACTCGTAGGGCTCAGGAGCAGATTCAAATGGTGC
TAGAGGAGCAGAGCAGGTTTGCCCTTGATATCGATCTTCATGCTCCGAAA
GTTAGGATCCCTATCAGAACCGGCGCCTCTTCCACATACGATAGCCAATT
TCTTCTGGATTTTGGTCATTTTACGTTGCACACTAAGGAGACGAATCCTG
TTGATGAGGGCCAGAGTCTGTATTCTCGTTTTTACATATCTGGAAGGGAT
ATAGCTGCTAGTTTTACAGATTGCGGCTCTGACAGTCAGAGCAATATTCT
GTCATCATCAAGTTCTGATAGCCAACTCTCTTTGTTTCCAGATGCTGTTA
ACTTCTACTCTATCATTGATAGATGTGGAATGTCTGTAATTGTTGATCAG
ATTAAAGTACCTCATCCAGATTACCCGTCAACTCGTGTTTCCGTACAAGT
ACCTATCCTTGGCATTCACTTTTCACCAGTCAGATATTCCCGACTTATGA
AGCTGTTGAACATAATCAATGGAACAATTCAAAATGCTTCTCAGCCTGTT
GGTGGAGATTTCCAAGCTGACCTGGCACCGTGGAATCCCCCAGATCTTTC
AGCTGAGGCTCAAATTCTTGTCTGGAAGGGAATTGGCTATTCTGTTGCCT
CTTGGCAGCCCTGTTTCCTTGTGCTGTCTGGATTTCATCTGTACGTATTG
GAGTCTGAAAGATCCCAGAGTTACTCTAGGTGCTCAAGCATGGCTAGTAA
ACATGTATTTGAAGTTCCTCCAACCAACGTTGGCGGTTTAGCATCTTGTA
TTGGTGTTTGTGCTAGAGGCATCGATAGCCAGAAGGCTCTGGAGTCTTTC
AGTACGCTAATAATAAAATTTCGGGACGAGGAGAAGGCTTCCTGGTTAAG
GGGTCTCATACGTGCAACATATCGAGCTTCTGCAACTCCTTCTGTTGACG
TACTTGGACAACATGATGACACAGTGTTCCCCGGAAGTCGACCGATTAAC
ATGAAAACAGCCGACCTTGTTGTTAATGGAACATTAATAGAAACAAAGCT
ATCAGTTTATGGAAAGGCTGGAGATGAGGCCCCTGTAAAGTTTAAAGAGA
CAATAATTCTGGAGGTTCTTGCCGGAGGAGGAAAGGTACATGTTGTTCGT
TGTGAAGGTGACCTAACTGTGAAGGTGAAGCTGCATTCTTTAAAAATAAA
AGATGAACTACAAGCTACATCAAATTTATCTCCACAATATTTAGCTTGCT
CTGTCCAGAAGGATGACAATTCCCTTAATTCCCCAAGTAGCATAGAGCCT
CAAGGGAATGAGCTATTGCCAACTGAGGATGACGACATTTTTAAGGATGC
CTTGCCTGATTTTCTATCTCTCTCTGATTCCGCTGAGGCGATAATAAGTG
AAAAGGATACTACAGTAGGCAGAACTAATTCTGCCGATGTATTTTACGAG
GCTGAGGATGTTGAAGATTCTCATTTTGTTTCACTTATATTTTTGACCAG
GAGTACTAGTTCTCCTGATTATGACGGTGTTGATTCACAGATGATTGTTA
GTATGTCAAAACTGGAGTTCTACTTTAACAGACCCACACTTGTTGCTTTG
ATTGGTTTTGGCCTTGATCTGAGTGCTGCAAATAGTGAATCAACTGTAAC
AGATGAAGATAAGAATGTGAATAAAGAATTATCAGAGAACAAACTGAAGA
CAGAAGAAAGTGACAACGCGTCTGTTAAAGGGTTACTGGGATATGGGAAA
GGTCGTGCTGTATTTTATTTGATTATGAATGTTGACAGTGTTACTGTTTA
TCTTAATAAGGAGGACGGTTCTCAGTTGGCCATGTTTGTCCAAGAAAGTT
TTGTTTTGGACCTCAAGGTTCACCCCAGTTCCATATCCATTGAAGGCACA
TTAGGAAATTTAAGATTGTGCGATCTTTCGCTGGGCAGTGATCACTATTG
GGCTTGGCTTTGTGATATACGCAATCAAGGGGCTGAATCACTTATCCAGT
TTAAATTTCATTCTTATAGTGCTGAGGATGATGATTATGAAGGATATGAT
TATAGTTTGCAGTGCCGTCTTTCTGCAGTTCGAATTGTTATACTTTATAG
GTTCGTCCAAGAGATAAGTGCCTATTTTATGGGACTTGCAACTCCACATA
CAGAAGAAGTTGTTAAATATGTGGATAAGGTTGGTGGGTTTGAGTGGTTG
ATTGAAAAGAATGAGATTGATGGAGGCTCTGCTTTGAAGCTGGACCTTTC
ACTGGACACTCCTATAATTATTGTACCAAGGAATTCTATGAGCAAAGATT
TCATACAACTTGATCTAGGCAACCTGAAGGTCAGGAATGAATTTAGCTGG
CATGGCTACCCTGAGAATGATCCTTCAGCTGTCCATCTTGACATCCTTGA
CGCTGAGATAATAGGAATCAATATGGCTGTGGGAATCGATGGTTGCTTAG
GTAAACCCATGATACGAGACGGCCAGGATATTCATATTTATGTGAGGCGC
AGTCTAAGGGATGTCTTTCGGAAGGTTCCAACTCTCGCTTTGGAAGTAAA
GGTGGGTTTATTACATTGTGTAATGTCTGATAAAGAATACACCATCATTC
TCGATTGTTTCTCAAAGAATATGAATGAAGAACCAAATCTACCTCCAAGT
TTTCGTGACAACATTACTAGCTCAAAAGAGACCATACGGTTGCTGGCCGA
TAAGGTCAACGCAAATAGTCAAAGTATTTTGTCACGTACTGTTACCATAA
TGGCCGTGGAAGTAGAATATGCATTGCTTGAATTATGTAACGGCATCCAT
GAGGAGTCCCCTTTGGCCCAAATAATTTTAGAAGGACTTTGGGTATCATA
CAGAATGACTTCATTGTCTGAAGCAGATCTTTATGTAACCATACCTAGAT
TTTCTATTCTGGATATACGTCCAGATACAAAACCGGAAATGCGGCTGATG
CTTGGATCGTGTAATGATGTTTCAAAACAGTCTTCAGTGGGAAGTTTGCC
ATTCTCCATCGGCTTTAAAAGATTTGACTCCAAAACTTCAGTCAGCTTGA
ATATACCCAACTCAACCATGTTCGTGATGGATTATAGATGGCGATTATCT
TCCCAGTTGTTTGTTATTCGTGTTCAGCAGCCTCGAGTCCTTGTTGTTCC
AGATTTCCTTATTGCTGTTGGTGAGTTTTTAGTTCCGGGTCTGGGAGCTA
TAACTGGCAGGGAGGAATTGATGGATCCTAAGAACGATCCCATTGGTAAA
AAAAATGGTATAGTATTGTTGGATCCACTTTACAAACAGAAAGAGGATGT
AGTACAACTTTCTGCAAATTCACGGCTTATTGCCGATGCATCAGCGGTTG
ATGACTATACATATGATGGTTGTGGGAAAATTATACGTTTAGTTGAAGAA
GCTGAAACCAAGGAACTCCCCTCAAATGGTTTTTGGCCTATTATTATTAT
AGGACGGGGGAAGAGTTTGCGTTTTGTAAATGTGAAAATTGAGAATGGTT
TCTTATTGAGGAAGTATACATATTTGAGTAATGAAAGCAGCTACTCTGTC
TCCACTGAAGATGGTGTTGAAATTTCATTTCTTGAAAATAATTTGTCCGA
TGATATTAAAAGGAGTACAGACAACATGAAAGAATTGTTGCTTACCTCTA
ATACTTCTGACAATATCAAAAGTGACTCGAGCAACATCCAGAGTTTCAGT
TTCGAGGCCCAGGTGGTTTCTCCAGAGTTCACATTCTATGACAGCAGAAA
GTCTTCTTTGGATGATTCCACACATGGAGAAAAGCTTCTGCGAGCAAAAC
TTGACTTCAGCTTCATGTTTGCATCGAAGGAAAATGATATTTGGATTAGA
GCCCTTTTTAAAGATCTAACTATGGAGGCTGGTTCTGGTCTTATTATTCT
AGATCCAGTGGACATTTCTGGAGGATATACATCTGTAAAAGATAAAACAA
ATATATCTGTGATATCTACTGACATATATATCCATCTTTCTTTAAGTGTT
ATGTCCCTTGTTCTTAACCTTCAAAGTCAAGCAGCTGGAGCATTTCAATA
TGGAAATTCTGATCTTTTGTCGCCATGTACTCACTTTGATCGACTGTGGG
TGTCGCAAAAAGAAAATGGACGCCTTAATAATCTTACCTTTTGGAGGCCT
CGAGCTCCCTTAAACTATGTTGTATTGGGTGATTGTGTGACATCGAGGCC
AATTCCTCCTTCGTATACAGTAATGGCTGTGAGCAGTACATATGGACGTG
TAAGAAAACCTCTGAGGTTTGAGCTCATAGGATTATTCTCTGCCATCCAA
GGATATGAAGACTTGGAGGGAAATTCCACTACTAGGGACTGCTCAATCTG
GAAACCGATCCCACCACAAGGATATACGGCGTTAGGATGTGTTGCACATG
TAGGAAGCCAACCACCACCTACTCACATTGTCCACTGTGTCCGTTCTGAT
CTTGTAACATCAACTAGGTATTCCGAGTGTATATTCTATACATCAGAAAA
TCAGTCCTTCTCGTCTGGATTTAGCATCTGGCTTTTGGACAATGTTGCTG
GATCCTTCTATGCTCATCCTTCAACTAGTTGCCCTCCCATCAAAATTTGT
CTTGACCTAAATCATCTGGTTCTAATTAATTCAAGTCGATCACATTTTGC
TTTCGAGAGTCCCAGCTCCAGTTTGGATTCTAGACGTGAAAATGAATATG
GGGAACCAAATTCTCAGAGTGCTAATTTATCTGGATGGGATGTAGTCAGA
TCAATTTCAAAAGCTACTAATTATTATATTTCAACTCCCAACTTTGAGAG
GATCTGGTGGGACAAGGGTGGTGATATTCGCCGACCAGTTTCTATCTGGC
GACCTGTGCCACGTCCCGGTTATGCCATTCTTGGTGACTGCATAATTGAA
GGTTTAGAACCACCTGCTCTGGGTATAATTTGCAAGGCTGACAACCCTGA
GATATCTGCAAAGCCGGTTCAATTCACTCAAGTAGCTCATATTGCAAGGA
AAGGTGTGGATGATGCTTTTTTCTGGTACCCTATTGCTCCCCCTGGCTAT
GCTTCGCTCGGATGCATCGTCTCACGAACAGATGAAGCACCCGCTCTGGA
ATCATTTTGTTGTCCGAGAATGGATCTTGTTAGCCAAGCCAACATCCTTG
AGGGCCCTCTATCACGATCTTCAAGTTCAAGAGGATCTCAGTGCTGGAGT
TTATGGAAAGTGGATAATCAGGCTTACACTTTCCTTGCACGCTCTGACTT
GAAAAGGCCTGCAACCCGGCTAGCTTTCACTTTTGGTGATTCTGTTAAAC
CTAAGACACGAGACAACATAACTGCTGAGATGAAATTGAGATGTTTGTCT
GTGACAATTTTAGACAGCTTATGTGGAACGATGACACCACTCTTTGATGT
TACAATTTCTAATCTGAAGCTTGCAACTCATGGCCGACTAGAGGCATTGA
ATGCTGTACTGATTTCGTCAGCTGCCGCATCAACATTTAACACGCATTTA
GAAGCATGGGAGCCACTAGTGGAGCCGTTCGATGGAATATTCAAGTTTGA
AACATATGATGCAGACGCACATCCAACATCAAAATTTGGTAAAAGAGCGC
GTGTTGCCGCAACCAGTACATTGAATATAAATCTCAGTACAGCAAATCTC
AATATGTTTTTGGAATCCGTGATTTCATGGAGAAGACAACGAGAATTTGA
ACAAAAAGCAATTCAACTAAATGAGGAACATCATGGCCATGCAGATGATT
CAAATTTCTCCGCATTAGATGAGGAAGATCTCCAAACTGTTACAATAGAA
AATAAACTTGGTTGTGATATTTATTTGAAGAAAGCTGAGCAGGATTCAAA
TGCAGTAGGACTACTGCATCATAATGACCATTCTTCTTTGTGGATTCCAC
CTCCAAGGTACACTGACAGGTTAAATGTTGCAGAAACAAGGGAATCACAC
CGTTATGTCGCTGTGCAAATAATTAAAGCGAAGGCTTTACCTATTGTTGA
TGATGGAAACAGTCACAAATTTTTCTGTGCATTGCGCCTAGTTGTTGATA
GTCAAGAGACATATCAGCAAAAACTATTTCCTCAGAGTGCAAGGACAAGA
TGTGTTAGGCCCCTAGTCTCGGTAAGCAATGGTGTAGATGAGGGCACTGC
CTGCTGGAATGAACTCTTTATATTTGAAGTTCCTAGGAAGGGTGGCGCTA
AGTTAGAAGTGGAGGTGACAAACCTAGCTGCAAAAGCAGGAAAAGGTGAA
GTTGTGGGTGCATCCTCGTTTTCTGTTGGACATGGTGCAAACCCTCTAAA
GAAGGTGGCTTCAGTTAAAATGTTGCATCAAGCATCCGAAGTCCAAAATA
TTGCAGCTTATCCGCTGAGAAGAACTGTTTTATCTGGCAGTGATGATAAC
CATTCTCAGAGTAGCCTTGTGGTTTCGACCTCTTATTTTGAAAGAAAATT
AGTTGCTAATGTTCTTAGTGAGGTGGAAGAAGGAAACGATGTTGATAGAG
ATATTGGTTTCTGGGTAGGCCTTTCCCCTAAAGGTTCATGGGAGAGTTTC
CGATCGTTCCTTCCATTATCTGTAATTACTAAAACTTTGAACGGTGATTA
TATTGCTGTTGATGTGATTATGAAAAATGGCAAGAAACATGCAGTTTTAA
GGGGTCTGGTAACAGTTATTAATGATTCTGATGTGAAATTGGAAGTGACC
ACTTGTCATGCATCAGTGATTCATACTAGCAATCTGTCAGCAGAAAATGT
TGTGGATGCTCTGAATCCTGGTTCTTCTTGTATCTTGCCCTGGAAAAGTG
CTTTAAGAGGTTCTGATTCCTGTTTACTTGTTCGTCCATGCACTGATGAT
GCTCACCCGCCCTATTCGTGGGGACATCTTGTTAATATTGGGCATTCCGG
GGGGAAAGAACAGTCCATTGATCAAGGTTCTTTTTCCCGACAAAATACCT
TGAAGCATAGGAATCATATGCCTACTTCATTCAAGCTCAGCCAACTTGAG
AAGACTGATGTTTTCTTCTGTTCGAGTAGCCCTGATAGAGATCAGTTTTG
GCTTAGTGTCTGCACAGATGCATCAGCGCTTCATACAGAGCTTAATGCCC
CCGTATATGATTGGAGAATCTCTATCAACTCTCCTTTGAAGTTGGAAAAC
CGACTTCCTTGTCCAGCAAGATTCATTGTCTGGGAAAAATTAAAAAACGG
GAACAATATTGAACGACAACGAGGCTTTATGTCATCTCGTGAAACTGTAA
ACATACATTCGGCTGATGTTCAAAATCTGATATATGTTACATTGTTTATA
CAGGGAGGGTGGTGTTTGGAAAAGGACCCTGTTCTTATATTGGACCTCTC
ATCTAATAATCATGTCTCATCATTTTGGATGGTTCGCCAGCAAAGCAGGA
GACTGCGTGTGAGCATAGAGCGTGACACTGGAGGAACTATAGCTGCTCCA
AAAACTGTAAGATTTTTTGTCCCATACTGGATTAGTAATGAGTCTTCTCT
GCCTTTAGCATATCAAGTGGTGGAAATAGAACCTTTGGAGGCTTCAGATG
CGAATTCCCTTCAGAGATCGAAAACAGGTAGATTTGGAACAACCTCAATG
AGAATTCCTAGTATCTCTGCGGACAGGAATTATTTTGGCTCGAGGAAAAA
CCTGCAAGTTCTAGAAGTGATTGAAGACACTAGTCCAACAGCTAGTATGC
TCTCTCCACAAGATTATGTGGGCCGTGGTGGTGTTATGCTGTTTTCATCT
CGTAATGATGGTTATTTATCTCCTCGAGTGGGAATCGCTGTTTCCATACG
AGATTCTGAAAATTATAGTCCTGGAATATCTCTTCTTGATCTGGAGAAAA
AGCAAAGAGTTGATGTCAAGGCTTTTAACTCAGATGGATCGTACTACAAT
CTTTCAGCTGTGTTACAAATGTCGTCAGATAGAACAAAGGTTATTCATTT
TCAGCAACAAACCTTGTTCGTTAATAGGGTTGGGTGCAGTCTCTGTCTTC
AGCAGTGTGATACTCAGTCATTGGAATGGATACATCCGACTGATCCTCCA
CTACAGTTGCGATGGCAGTCCCTTGGAAGAGCTGAGATGTTGAGATTGCG
AATGGATGGACATAGCTGGAGTACGCCTTTTAGTGTTGGAACTGAAGGTG
TTATCTGTATTTCTTTGACCAGAAATCCTGCAAGTGCTCCAACGCAATTA
AGAGTAGAAGTTAGAAGTGGTACAATGAGCTCACGCTGTGAAGTTATTTT
TCGTCCCAATTCATTTTCAAGTCCTTACAGGATTGAGAATCATTCTTTAT
TTTTGCCGATTCGTTTCCAGCAAGTGGATGGTGCCAGCAATTCATGGCAG
TCCCTACTTCCCAATGCATCTGCTTCTTTTTCGTGGGAAGATCTAGGCAG
ACCTCGACAATTGGAACTCTTGGTAGATGGTGATGACCGTTCAAAATCAC
TAAAGTACAGTATTGATGAGGTAGCTGATCATCAGCCTGTATTTGTGAAT
GATGAACCTACAAGAGTTCTACGTATTAACATTCTGAGAGAGGATAAAGT
TAATGTTATAAAGATCAGTGACTGGAAGCCGGAGAATGAACTTCAACCAG
ATATAAGTAGAAGCAGCTCTTTTTCTTCAATCCCAGTTTCTGAAAATGAT
GTTACACTTCAACAATCAACTTCAAATAGTGAATTTCATGTTATTTTCGA
GATTTCTGAGCTCGGGCTATCCATTATTGATCATACACCTGAGGAGATAT
TATATCTTTCCCTGCAGAGTCTTCTGTTGTCATATTCAACTGGCTTAGGT
TCTGGGATCACAAGGTTGAAATTAAGAATGCGGGGAATTCAGGTGGATAA
TCAGTTGCCTTTAACTCCAACGCCTGTTCTGTTTAGACCACAGAGAGTCG
GGGATGAGACTGATTACATCCTCAAATTTTCGATTACGCAGCAATCCAAT
GGATCACTTGATTTATGTGTGTATCCATATATTGGCTTTCAAGGACCCGA
GAATTCTGCATTTTTGATTAACGTCCATGAACCAATAATTTGGCGCATTC
ATGGGATGATTCAGCAGATCAACTTAAGCAGATTGTCGGAAACTGAAAGC
ACTGCGGTTTCAGTTGATCCCATCTTTCAAATCGGTGTTTTCAATGTCTC
CGAAGTTCGCTTCAAAGTCTCCATGGCTATGTCACCAACTCAGCGACCAG
TTGGTGTTCTTGGGTTTTGGGCATCCTTGATGACTGCACTTGGAAACACT
GAGAATATGCCAATTCGATTAAATCAAAGGTTCCAGGAGAATATACGCAC
AAGGCAAAGCGTACTCATGAGTAACGCTATTGCGAATATCAAGAAAGATA
TTCTTGGTCAGCCTCTTCAACTGCTCTCAGGTGTTGACATACTGGGCAAT
GCCAGTAGTGCACTTGGGCATATGAGCAAAGGTGTTGCAGCTCTATCAAT
GGATAAGAAATTTATTCAAAGTCGGCAGAGACAAGATAGCAAAGGTGTGG
AGGACTTTGGCGATGTTATAAGAGATGGGGGTGGAGCTCTAGCAAAGGGA
TTTTTCCGAGGATTTACCGGAATTGTTACTAAACCTCTTGAAGGAGCCAA
AGCATCTGGAGTAGAGGGCTTTGTTCAAGGTGTTGGAAAAGGTATAATAG
GTGCCGCTGCGCAACCTGTCAGTGGAGTTCTGGATCTTTTGTCAAAAACC
ACTGAAGGTGCAAATGCTATGAGAATCAAAATTGCGTCTGCTATTGCGTC
AGAAGATCAACTCCTTCGCAGGAGGCTTCCCCGAGTAATTGGTGGCGATA
ATTTGCTAAGACCATATGATTTGTACAAAGCTCAGGGACAGGTGATACTG
CAACTAGCAGAATCTGTATCGTTCTTCCGGCAAGTTGACTTGTTCAAAGT
GCGTGGGAAGTTTGCCTTGTCGGATGCATATGAAGATCATTTTTTGCTCC
CTAAAGCAAAATATCTTCTTGTCACTCATAGAAGGATTATACTTTTGCAA
CAAGCATCCAGCATTATCGGGCATAAGAAGTTTAACCCAGTCAGAGATCC
ATGCTCTGTTTTGTGGGATGTATTGTGGGATGACCTGATGACAATGGAAT
TAACTCATGGAAAGAAAGATCGGCCAGATTCAATACCTTCACGGATTATT
CTTTACTTACAAGCTCGATCTGTAGATACTAAGGATCAAGTTCGCATTAT
AAAGTGCAACCGTGATTCTAATCAAGCCTTTGAAGTTTATACTTCGATTG
AGGAAGCTATGAATACTTATGGGCCAAACCAGGCAAAGGACTTGCTGAGA
AGGACTGCTGCCAAACCATACTCAGCCATTGTTGATTCTGCTAAGGCCGA
AGCTATCCCCAGAGATAACTTTTACTTCTCATCTCCCCAGCAGATGCCTT
CACCTATTTCTCACAGCTCAACTTTTGGCACTAATGCAAATTAGTTGTGA
AAGAAATATTATGGCGTGATCTTAGATAAAGTTTGAGTTGTATTTGTCAA
GATGGCTATCAGTACAAATGATTGAGAAATTTTGCATGACAAGTGAGCAG
TCGCTAAGCTGCTGACCCTTTGGAGACAAACTACATTCCATGTGTTTCTG
GAGAGCAGTTTTGAGCACTAACCCGAAAGACAAGGGAAAGGGTGCGACAG
AGCACCGCGATCAAGTCCGATGACATCGAGTAGTTGTACATACCTGCATA
CATATATAGAATTGTATATATATATTTTAATTAATAGAACTTCAGCAGTA
GTTCAGGGAAAATGTATATATGACATGTAGCATATATTTTCACTGGCAGG
TCCTTTTCCAAGTTTTAAAAGAGGCCAGTATAAGTAGCTAATATATTATA
GATGTAGAAGCAGCTGGACTACTTTGAGGTGAAGAGGGCTCCTGCATATT
GTTGGGACTCAATAGTCCTCGTAGACCAACACATTTTATACAGCTCAATA
TATTCATGATGATGTATTACACTATTATTAAGATGAAAAATAAATAAGCT
TTGGTGATTTATGGGGTATCTCGGTTTTGGACC

Sequence Length:

13083

Sequence Checksum:

eba7c43adf0982e30f935959bd5fb0e6

View location in JBrowse:

DCARv2_Chr7:928589..987681-

Protein Sequence:

MFEAHVLHLLRRYLGEYVHGLSAEALRISVWKGDVVLKDLKLKAEALNSL
QLPLTVKAGFIGTITLKVPWKSLGKEPVIVLIDRVFVLARPAPDARSVKE
EDREKLFEAKLQQIEEAESATLEAISRSKVGSSPAGNSWLGSLIATIIGN
LKITISNVHVRYEDSTSNPGHSFACGVTLAKLAAVTMDEQGNETFDTSGA
LDKLRKSVQLGRLAMYHDSNQLPWSLDKKWEDLTPRDWTEIFEDGINESG
EGGETVSKWAQDRNYLVSPINGDLKYHRLGNQEKSNLDEPSEKVSLILSD
VSLTITEAQYHDWIRLFEVFSRYKAYLEVSHIRPVVPVLENPKAWWRYAA
QASLQQKRICYRFSWDQVQSLCHLRRRYIQLYASSLQKMSNVDNKEIRDI
EKDLDPKVILLWRFLAHAKAESVRSKEEAERRLSKMKSWFSFNWRAPSED
TLVEETSDAQMIEERLTKEEWQAINNLLSYQPDEELNFGSGKDMQNTTHY
LINVSVSRAAAKIVNISQIEIVYGRFEQLHVSTKLKHRSTHCDLTLKYYG
VSAPEGSLAQSGYDEQNLNALAATFVYLPIGENVDWRLSATITPCHATVY
MESYDRFFEFLKRSKAISPTIALETAAALQNKIEEVTRRAQEQIQMVLEE
QSRFALDIDLHAPKVRIPIRTGASSTYDSQFLLDFGHFTLHTKETNPVDE
GQSLYSRFYISGRDIAASFTDCGSDSQSNILSSSSSDSQLSLFPDAVNFY
SIIDRCGMSVIVDQIKVPHPDYPSTRVSVQVPILGIHFSPVRYSRLMKLL
NIINGTIQNASQPVGGDFQADLAPWNPPDLSAEAQILVWKGIGYSVASWQ
PCFLVLSGFHLYVLESERSQSYSRCSSMASKHVFEVPPTNVGGLASCIGV
CARGIDSQKALESFSTLIIKFRDEEKASWLRGLIRATYRASATPSVDVLG
QHDDTVFPGSRPINMKTADLVVNGTLIETKLSVYGKAGDEAPVKFKETII
LEVLAGGGKVHVVRCEGDLTVKVKLHSLKIKDELQATSNLSPQYLACSVQ
KDDNSLNSPSSIEPQGNELLPTEDDDIFKDALPDFLSLSDSAEAIISEKD
TTVGRTNSADVFYEAEDVEDSHFVSLIFLTRSTSSPDYDGVDSQMIVSMS
KLEFYFNRPTLVALIGFGLDLSAANSESTVTDEDKNVNKELSENKLKTEE
SDNASVKGLLGYGKGRAVFYLIMNVDSVTVYLNKEDGSQLAMFVQESFVL
DLKVHPSSISIEGTLGNLRLCDLSLGSDHYWAWLCDIRNQGAESLIQFKF
HSYSAEDDDYEGYDYSLQCRLSAVRIVILYRFVQEISAYFMGLATPHTEE
VVKYVDKVGGFEWLIEKNEIDGGSALKLDLSLDTPIIIVPRNSMSKDFIQ
LDLGNLKVRNEFSWHGYPENDPSAVHLDILDAEIIGINMAVGIDGCLGKP
MIRDGQDIHIYVRRSLRDVFRKVPTLALEVKVGLLHCVMSDKEYTIILDC
FSKNMNEEPNLPPSFRDNITSSKETIRLLADKVNANSQSILSRTVTIMAV
EVEYALLELCNGIHEESPLAQIILEGLWVSYRMTSLSEADLYVTIPRFSI
LDIRPDTKPEMRLMLGSCNDVSKQSSVGSLPFSIGFKRFDSKTSVSLNIP
NSTMFVMDYRWRLSSQLFVIRVQQPRVLVVPDFLIAVGEFLVPGLGAITG
REELMDPKNDPIGKKNGIVLLDPLYKQKEDVVQLSANSRLIADASAVDDY
TYDGCGKIIRLVEEAETKELPSNGFWPIIIIGRGKSLRFVNVKIENGFLL
RKYTYLSNESSYSVSTEDGVEISFLENNLSDDIKRSTDNMKELLLTSNTS
DNIKSDSSNIQSFSFEAQVVSPEFTFYDSRKSSLDDSTHGEKLLRAKLDF
SFMFASKENDIWIRALFKDLTMEAGSGLIILDPVDISGGYTSVKDKTNIS
VISTDIYIHLSLSVMSLVLNLQSQAAGAFQYGNSDLLSPCTHFDRLWVSQ
KENGRLNNLTFWRPRAPLNYVVLGDCVTSRPIPPSYTVMAVSSTYGRVRK
PLRFELIGLFSAIQGYEDLEGNSTTRDCSIWKPIPPQGYTALGCVAHVGS
QPPPTHIVHCVRSDLVTSTRYSECIFYTSENQSFSSGFSIWLLDNVAGSF
YAHPSTSCPPIKICLDLNHLVLINSSRSHFAFESPSSSLDSRRENEYGEP
NSQSANLSGWDVVRSISKATNYYISTPNFERIWWDKGGDIRRPVSIWRPV
PRPGYAILGDCIIEGLEPPALGIICKADNPEISAKPVQFTQVAHIARKGV
DDAFFWYPIAPPGYASLGCIVSRTDEAPALESFCCPRMDLVSQANILEGP
LSRSSSSRGSQCWSLWKVDNQAYTFLARSDLKRPATRLAFTFGDSVKPKT
RDNITAEMKLRCLSVTILDSLCGTMTPLFDVTISNLKLATHGRLEALNAV
LISSAAASTFNTHLEAWEPLVEPFDGIFKFETYDADAHPTSKFGKRARVA
ATSTLNINLSTANLNMFLESVISWRRQREFEQKAIQLNEEHHGHADDSNF
SALDEEDLQTVTIENKLGCDIYLKKAEQDSNAVGLLHHNDHSSLWIPPPR
YTDRLNVAETRESHRYVAVQIIKAKALPIVDDGNSHKFFCALRLVVDSQE
TYQQKLFPQSARTRCVRPLVSVSNGVDEGTACWNELFIFEVPRKGGAKLE
VEVTNLAAKAGKGEVVGASSFSVGHGANPLKKVASVKMLHQASEVQNIAA
YPLRRTVLSGSDDNHSQSSLVVSTSYFERKLVANVLSEVEEGNDVDRDIG
FWVGLSPKGSWESFRSFLPLSVITKTLNGDYIAVDVIMKNGKKHAVLRGL
VTVINDSDVKLEVTTCHASVIHTSNLSAENVVDALNPGSSCILPWKSALR
GSDSCLLVRPCTDDAHPPYSWGHLVNIGHSGGKEQSIDQGSFSRQNTLKH
RNHMPTSFKLSQLEKTDVFFCSSSPDRDQFWLSVCTDASALHTELNAPVY
DWRISINSPLKLENRLPCPARFIVWEKLKNGNNIERQRGFMSSRETVNIH
SADVQNLIYVTLFIQGGWCLEKDPVLILDLSSNNHVSSFWMVRQQSRRLR
VSIERDTGGTIAAPKTVRFFVPYWISNESSLPLAYQVVEIEPLEASDANS
LQRSKTGRFGTTSMRIPSISADRNYFGSRKNLQVLEVIEDTSPTASMLSP
QDYVGRGGVMLFSSRNDGYLSPRVGIAVSIRDSENYSPGISLLDLEKKQR
VDVKAFNSDGSYYNLSAVLQMSSDRTKVIHFQQQTLFVNRVGCSLCLQQC
DTQSLEWIHPTDPPLQLRWQSLGRAEMLRLRMDGHSWSTPFSVGTEGVIC
ISLTRNPASAPTQLRVEVRSGTMSSRCEVIFRPNSFSSPYRIENHSLFLP
IRFQQVDGASNSWQSLLPNASASFSWEDLGRPRQLELLVDGDDRSKSLKY
SIDEVADHQPVFVNDEPTRVLRINILREDKVNVIKISDWKPENELQPDIS
RSSSFSSIPVSENDVTLQQSTSNSEFHVIFEISELGLSIIDHTPEEILYL
SLQSLLLSYSTGLGSGITRLKLRMRGIQVDNQLPLTPTPVLFRPQRVGDE
TDYILKFSITQQSNGSLDLCVYPYIGFQGPENSAFLINVHEPIIWRIHGM
IQQINLSRLSETESTAVSVDPIFQIGVFNVSEVRFKVSMAMSPTQRPVGV
LGFWASLMTALGNTENMPIRLNQRFQENIRTRQSVLMSNAIANIKKDILG
QPLQLLSGVDILGNASSALGHMSKGVAALSMDKKFIQSRQRQDSKGVEDF
GDVIRDGGGALAKGFFRGFTGIVTKPLEGAKASGVEGFVQGVGKGIIGAA
AQPVSGVLDLLSKTTEGANAMRIKIASAIASEDQLLRRRLPRVIGGDNLL
RPYDLYKAQGQVILQLAESVSFFRQVDLFKVRGKFALSDAYEDHFLLPKA
KYLLVTHRRIILLQQASSIIGHKKFNPVRDPCSVLWDVLWDDLMTMELTH
GKKDRPDSIPSRIILYLQARSVDTKDQVRIIKCNRDSNQAFEVYTSIEEA
MNTYGPNQAKDLLRRTAAKPYSAIVDSAKAEAIPRDNFYFSSPQQMPSPI
SHSSTFGTNAN

Relationship:

There are 2 relationships.
Relationships
The mRNA, XM_017362727.1, is a part of gene, LOC108195777.
The polypeptide, XM_017362727.1, derives from mRNA, XM_017362727.1.

Cross Reference:


NCBI Gene	108195777
NCBI Nuccore	XM_017362727.1

Gene:

LOC108195777

Model Evidence:

Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns

Gbkey:

mRNA