XM_017362729.1 | CarrotOmics

Resource Type:

mRNA

Name:

XM_017362729.1

Identifier:

XM_017362729.1

Organism:

Daucus carota subspecies sativus

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100	The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here.

Transcript Id:

XM_017362729.1

Product:

uncharacterized LOC108195777, transcript variant X4

Sequence:

CGAAAGTTAGGATCCCTATCAGAACCGGCGCCTCTTCCACATACGATAGC
CAATTTCTTCTGGATTTTGGTCATTTTACGTTGCACACTAAGATGCTGTT
AACTTCTACTCTATCATTGATAGATGTGGAATGTCTGTAATTGTTGATCA
GATTAAAGTACCTCATCCAGATTACCCGTCAACTCGTGTTTCCGTACAAG
TACCTATCCTTGGCATTCACTTTTCACCAGTCAGATATTCCCGACTTATG
AAGCTGTTGAACATAATCAATGGAACAATTCAAAATGCTTCTCAGCCTGT
TGGTGGAGATTTCCAAGCTGACCTGGCACCGTGGAATCCCCCAGATCTTT
CAGCTGAGGCTCAAATTCTTGTCTGGAAGGGAATTGGCTATTCTGTTGCC
TCTTGGCAGCCCTGTTTCCTTGTGCTGTCTGGATTTCATCTGTACGTATT
GGAGTCTGAAAGATCCCAGAGTTACTCTAGGTGCTCAAGCATGGCTAGTA
AACATGTATTTGAAGTTCCTCCAACCAACGTTGGCGGTTTAGCATCTTGT
ATTGGTGTTTGTGCTAGAGGCATCGATAGCCAGAAGGCTCTGGAGTCTTT
CAGTACGCTAATAATAAAATTTCGGGACGAGGAGAAGGCTTCCTGGTTAA
GGGGTCTCATACGTGCAACATATCGAGCTTCTGCAACTCCTTCTGTTGAC
GTACTTGGACAACATGATGACACAGTGTTCCCCGGAAGTCGACCGATTAA
CATGAAAACAGCCGACCTTGTTGTTAATGGAACATTAATAGAAACAAAGC
TATCAGTTTATGGAAAGGCTGGAGATGAGGCCCCTGTAAAGTTTAAAGAG
ACAATAATTCTGGAGGTTCTTGCCGGAGGAGGAAAGGTACATGTTGTTCG
TTGTGAAGGTGACCTAACTGTGAAGGTGAAGCTGCATTCTTTAAAAATAA
AAGATGAACTACAAGCTACATCAAATTTATCTCCACAATATTTAGCTTGC
TCTGTCCAGAAGGATGACAATTCCCTTAATTCCCCAAGTAGCATAGAGCC
TCAAGGGAATGAGCTATTGCCAACTGAGGATGACGACATTTTTAAGGATG
CCTTGCCTGATTTTCTATCTCTCTCTGATTCCGCTGAGGCGATAATAAGT
GAAAAGGATACTACAGTAGGCAGAACTAATTCTGCCGATGTATTTTACGA
GGCTGAGGATGTTGAAGATTCTCATTTTGTTTCACTTATATTTTTGACCA
GGAGTACTAGTTCTCCTGATTATGACGGTGTTGATTCACAGATGATTGTT
AGTATGTCAAAACTGGAGTTCTACTTTAACAGACCCACACTTGTTGCTTT
GATTGGTTTTGGCCTTGATCTGAGTGCTGCAAATAGTGAATCAACTGTAA
CAGATGAAGATAAGAATGTGAATAAAGAATTATCAGAGAACAAACTGAAG
ACAGAAGAAAGTGACAACGCGTCTGTTAAAGGGTTACTGGGATATGGGAA
AGGTCGTGCTGTATTTTATTTGATTATGAATGTTGACAGTGTTACTGTTT
ATCTTAATAAGGAGGACGGTTCTCAGTTGGCCATGTTTGTCCAAGAAAGT
TTTGTTTTGGACCTCAAGGTTCACCCCAGTTCCATATCCATTGAAGGCAC
ATTAGGAAATTTAAGATTGTGCGATCTTTCGCTGGGCAGTGATCACTATT
GGGCTTGGCTTTGTGATATACGCAATCAAGGGGCTGAATCACTTATCCAG
TTTAAATTTCATTCTTATAGTGCTGAGGATGATGATTATGAAGGATATGA
TTATAGTTTGCAGTGCCGTCTTTCTGCAGTTCGAATTGTTATACTTTATA
GGTTCGTCCAAGAGATAAGTGCCTATTTTATGGGACTTGCAACTCCACAT
ACAGAAGAAGTTGTTAAATATGTGGATAAGGTTGGTGGGTTTGAGTGGTT
GATTGAAAAGAATGAGATTGATGGAGGCTCTGCTTTGAAGCTGGACCTTT
CACTGGACACTCCTATAATTATTGTACCAAGGAATTCTATGAGCAAAGAT
TTCATACAACTTGATCTAGGCAACCTGAAGGTCAGGAATGAATTTAGCTG
GCATGGCTACCCTGAGAATGATCCTTCAGCTGTCCATCTTGACATCCTTG
ACGCTGAGATAATAGGAATCAATATGGCTGTGGGAATCGATGGTTGCTTA
GGTAAACCCATGATACGAGACGGCCAGGATATTCATATTTATGTGAGGCG
CAGTCTAAGGGATGTCTTTCGGAAGGTTCCAACTCTCGCTTTGGAAGTAA
AGGTGGGTTTATTACATTGTGTAATGTCTGATAAAGAATACACCATCATT
CTCGATTGTTTCTCAAAGAATATGAATGAAGAACCAAATCTACCTCCAAG
TTTTCGTGACAACATTACTAGCTCAAAAGAGACCATACGGTTGCTGGCCG
ATAAGGTCAACGCAAATAGTCAAAGTATTTTGTCACGTACTGTTACCATA
ATGGCCGTGGAAGTAGAATATGCATTGCTTGAATTATGTAACGGCATCCA
TGAGGAGTCCCCTTTGGCCCAAATAATTTTAGAAGGACTTTGGGTATCAT
ACAGAATGACTTCATTGTCTGAAGCAGATCTTTATGTAACCATACCTAGA
TTTTCTATTCTGGATATACGTCCAGATACAAAACCGGAAATGCGGCTGAT
GCTTGGATCGTGTAATGATGTTTCAAAACAGTCTTCAGTGGGAAGTTTGC
CATTCTCCATCGGCTTTAAAAGATTTGACTCCAAAACTTCAGTCAGCTTG
AATATACCCAACTCAACCATGTTCGTGATGGATTATAGATGGCGATTATC
TTCCCAGTTGTTTGTTATTCGTGTTCAGCAGCCTCGAGTCCTTGTTGTTC
CAGATTTCCTTATTGCTGTTGGTGAGTTTTTAGTTCCGGGTCTGGGAGCT
ATAACTGGCAGGGAGGAATTGATGGATCCTAAGAACGATCCCATTGGTAA
AAAAAATGGTATAGTATTGTTGGATCCACTTTACAAACAGAAAGAGGATG
TAGTACAACTTTCTGCAAATTCACGGCTTATTGCCGATGCATCAGCGGTT
GATGACTATACATATGATGGTTGTGGGAAAATTATACGTTTAGTTGAAGA
AGCTGAAACCAAGGAACTCCCCTCAAATGGTTTTTGGCCTATTATTATTA
TAGGACGGGGGAAGAGTTTGCGTTTTGTAAATGTGAAAATTGAGAATGGT
TTCTTATTGAGGAAGTATACATATTTGAGTAATGAAAGCAGCTACTCTGT
CTCCACTGAAGATGGTGTTGAAATTTCATTTCTTGAAAATAATTTGTCCG
ATGATATTAAAAGGAGTACAGACAACATGAAAGAATTGTTGCTTACCTCT
AATACTTCTGACAATATCAAAAGTGACTCGAGCAACATCCAGAGTTTCAG
TTTCGAGGCCCAGGTGGTTTCTCCAGAGTTCACATTCTATGACAGCAGAA
AGTCTTCTTTGGATGATTCCACACATGGAGAAAAGCTTCTGCGAGCAAAA
CTTGACTTCAGCTTCATGTTTGCATCGAAGGAAAATGATATTTGGATTAG
AGCCCTTTTTAAAGATCTAACTATGGAGGCTGGTTCTGGTCTTATTATTC
TAGATCCAGTGGACATTTCTGGAGGATATACATCTGTAAAAGATAAAACA
AATATATCTGTGATATCTACTGACATATATATCCATCTTTCTTTAAGTGT
TATGTCCCTTGTTCTTAACCTTCAAAGTCAAGCAGCTGGAGCATTTCAAT
ATGGAAATTCTGATCTTTTGTCGCCATGTACTCACTTTGATCGACTGTGG
GTGTCGCAAAAAGAAAATGGACGCCTTAATAATCTTACCTTTTGGAGGCC
TCGAGCTCCCTTAAACTATGTTGTATTGGGTGATTGTGTGACATCGAGGC
CAATTCCTCCTTCGTATACAGTAATGGCTGTGAGCAGTACATATGGACGT
GTAAGAAAACCTCTGAGGTTTGAGCTCATAGGATTATTCTCTGCCATCCA
AGGATATGAAGACTTGGAGGGAAATTCCACTACTAGGGACTGCTCAATCT
GGAAACCGATCCCACCACAAGGATATACGGCGTTAGGATGTGTTGCACAT
GTAGGAAGCCAACCACCACCTACTCACATTGTCCACTGTGTCCGTTCTGA
TCTTGTAACATCAACTAGGTATTCCGAGTGTATATTCTATACATCAGAAA
ATCAGTCCTTCTCGTCTGGATTTAGCATCTGGCTTTTGGACAATGTTGCT
GGATCCTTCTATGCTCATCCTTCAACTAGTTGCCCTCCCATCAAAATTTG
TCTTGACCTAAATCATCTGGTTCTAATTAATTCAAGTCGATCACATTTTG
CTTTCGAGAGTCCCAGCTCCAGTTTGGATTCTAGACGTGAAAATGAATAT
GGGGAACCAAATTCTCAGAGTGCTAATTTATCTGGATGGGATGTAGTCAG
ATCAATTTCAAAAGCTACTAATTATTATATTTCAACTCCCAACTTTGAGA
GGATCTGGTGGGACAAGGGTGGTGATATTCGCCGACCAGTTTCTATCTGG
CGACCTGTGCCACGTCCCGGTTATGCCATTCTTGGTGACTGCATAATTGA
AGGTTTAGAACCACCTGCTCTGGGTATAATTTGCAAGGCTGACAACCCTG
AGATATCTGCAAAGCCGGTTCAATTCACTCAAGTAGCTCATATTGCAAGG
AAAGGTGTGGATGATGCTTTTTTCTGGTACCCTATTGCTCCCCCTGGCTA
TGCTTCGCTCGGATGCATCGTCTCACGAACAGATGAAGCACCCGCTCTGG
AATCATTTTGTTGTCCGAGAATGGATCTTGTTAGCCAAGCCAACATCCTT
GAGGGCCCTCTATCACGATCTTCAAGTTCAAGAGGATCTCAGTGCTGGAG
TTTATGGAAAGTGGATAATCAGGCTTACACTTTCCTTGCACGCTCTGACT
TGAAAAGGCCTGCAACCCGGCTAGCTTTCACTTTTGGTGATTCTGTTAAA
CCTAAGACACGAGACAACATAACTGCTGAGATGAAATTGAGATGTTTGTC
TGTGACAATTTTAGACAGCTTATGTGGAACGATGACACCACTCTTTGATG
TTACAATTTCTAATCTGAAGCTTGCAACTCATGGCCGACTAGAGGCATTG
AATGCTGTACTGATTTCGTCAGCTGCCGCATCAACATTTAACACGCATTT
AGAAGCATGGGAGCCACTAGTGGAGCCGTTCGATGGAATATTCAAGTTTG
AAACATATGATGCAGACGCACATCCAACATCAAAATTTGGTAAAAGAGCG
CGTGTTGCCGCAACCAGTACATTGAATATAAATCTCAGTACAGCAAATCT
CAATATGTTTTTGGAATCCGTGATTTCATGGAGAAGACAACGAGAATTTG
AACAAAAAGCAATTCAACTAAATGAGGAACATCATGGCCATGCAGATGAT
TCAAATTTCTCCGCATTAGATGAGGAAGATCTCCAAACTGTTACAATAGA
AAATAAACTTGGTTGTGATATTTATTTGAAGAAAGCTGAGCAGGATTCAA
ATGCAGTAGGACTACTGCATCATAATGACCATTCTTCTTTGTGGATTCCA
CCTCCAAGGTACACTGACAGGTTAAATGTTGCAGAAACAAGGGAATCACA
CCGTTATGTCGCTGTGCAAATAATTAAAGCGAAGGCTTTACCTATTGTTG
ATGATGGAAACAGTCACAAATTTTTCTGTGCATTGCGCCTAGTTGTTGAT
AGTCAAGAGACATATCAGCAAAAACTATTTCCTCAGAGTGCAAGGACAAG
ATGTGTTAGGCCCCTAGTCTCGGTAAGCAATGGTGTAGATGAGGGCACTG
CCTGCTGGAATGAACTCTTTATATTTGAAGTTCCTAGGAAGGGTGGCGCT
AAGTTAGAAGTGGAGGTGACAAACCTAGCTGCAAAAGCAGGAAAAGGTGA
AGTTGTGGGTGCATCCTCGTTTTCTGTTGGACATGGTGCAAACCCTCTAA
AGAAGGTGGCTTCAGTTAAAATGTTGCATCAAGCATCCGAAGTCCAAAAT
ATTGCAGCTTATCCGCTGAGAAGAACTGTTTTATCTGGCAGTGATGATAA
CCATTCTCAGAGTAGCCTTGTGGTTTCGACCTCTTATTTTGAAAGAAAAT
TAGTTGCTAATGTTCTTAGTGAGGTGGAAGAAGGAAACGATGTTGATAGA
GATATTGGTTTCTGGGTAGGCCTTTCCCCTAAAGGTTCATGGGAGAGTTT
CCGATCGTTCCTTCCATTATCTGTAATTACTAAAACTTTGAACGGTGATT
ATATTGCTGTTGATGTGATTATGAAAAATGGCAAGAAACATGCAGTTTTA
AGGGGTCTGGTAACAGTTATTAATGATTCTGATGTGAAATTGGAAGTGAC
CACTTGTCATGCATCAGTGATTCATACTAGCAATCTGTCAGCAGAAAATG
TTGTGGATGCTCTGAATCCTGGTTCTTCTTGTATCTTGCCCTGGAAAAGT
GCTTTAAGAGGTTCTGATTCCTGTTTACTTGTTCGTCCATGCACTGATGA
TGCTCACCCGCCCTATTCGTGGGGACATCTTGTTAATATTGGGCATTCCG
GGGGGAAAGAACAGTCCATTGATCAAGGTTCTTTTTCCCGACAAAATACC
TTGAAGCATAGGAATCATATGCCTACTTCATTCAAGCTCAGCCAACTTGA
GAAGACTGATGTTTTCTTCTGTTCGAGTAGCCCTGATAGAGATCAGTTTT
GGCTTAGTGTCTGCACAGATGCATCAGCGCTTCATACAGAGCTTAATGCC
CCCGTATATGATTGGAGAATCTCTATCAACTCTCCTTTGAAGTTGGAAAA
CCGACTTCCTTGTCCAGCAAGATTCATTGTCTGGGAAAAATTAAAAAACG
GGAACAATATTGAACGACAACGAGGCTTTATGTCATCTCGTGAAACTGTA
AACATACATTCGGCTGATGTTCAAAATCTGATATATGTTACATTGTTTAT
ACAGGGAGGGTGGTGTTTGGAAAAGGACCCTGTTCTTATATTGGACCTCT
CATCTAATAATCATGTCTCATCATTTTGGATGGTTCGCCAGCAAAGCAGG
AGACTGCGTGTGAGCATAGAGCGTGACACTGGAGGAACTATAGCTGCTCC
AAAAACTGTAAGATTTTTTGTCCCATACTGGATTAGTAATGAGTCTTCTC
TGCCTTTAGCATATCAAGTGGTGGAAATAGAACCTTTGGAGGCTTCAGAT
GCGAATTCCCTTCAGAGATCGAAAACAGGTAGATTTGGAACAACCTCAAT
GAGAATTCCTAGTATCTCTGCGGACAGGAATTATTTTGGCTCGAGGAAAA
ACCTGCAAGTTCTAGAAGTGATTGAAGACACTAGTCCAACAGCTAGTATG
CTCTCTCCACAAGATTATGTGGGCCGTGGTGGTGTTATGCTGTTTTCATC
TCGTAATGATGGTTATTTATCTCCTCGAGTGGGAATCGCTGTTTCCATAC
GAGATTCTGAAAATTATAGTCCTGGAATATCTCTTCTTGATCTGGAGAAA
AAGCAAAGAGTTGATGTCAAGGCTTTTAACTCAGATGGATCGTACTACAA
TCTTTCAGCTGTGTTACAAATGTCGTCAGATAGAACAAAGGTTATTCATT
TTCAGCAACAAACCTTGTTCGTTAATAGGGTTGGGTGCAGTCTCTGTCTT
CAGCAGTGTGATACTCAGTCATTGGAATGGATACATCCGACTGATCCTCC
ACTACAGTTGCGATGGCAGTCCCTTGGAAGAGCTGAGATGTTGAGATTGC
GAATGGATGGACATAGCTGGAGTACGCCTTTTAGTGTTGGAACTGAAGGT
GTTATCTGTATTTCTTTGACCAGAAATCCTGCAAGTGCTCCAACGCAATT
AAGAGTAGAAGTTAGAAGTGGTACAATGAGCTCACGCTGTGAAGTTATTT
TTCGTCCCAATTCATTTTCAAGTCCTTACAGGATTGAGAATCATTCTTTA
TTTTTGCCGATTCGTTTCCAGCAAGTGGATGGTGCCAGCAATTCATGGCA
GTCCCTACTTCCCAATGCATCTGCTTCTTTTTCGTGGGAAGATCTAGGCA
GACCTCGACAATTGGAACTCTTGGTAGATGGTGATGACCGTTCAAAATCA
CTAAAGTACAGTATTGATGAGGTAGCTGATCATCAGCCTGTATTTGTGAA
TGATGAACCTACAAGAGTTCTACGTATTAACATTCTGAGAGAGGATAAAG
TTAATGTTATAAAGATCAGTGACTGGAAGCCGGAGAATGAACTTCAACCA
GATATAAGTAGAAGCAGCTCTTTTTCTTCAATCCCAGTTTCTGAAAATGA
TGTTACACTTCAACAATCAACTTCAAATAGTGAATTTCATGTTATTTTCG
AGATTTCTGAGCTCGGGCTATCCATTATTGATCATACACCTGAGGAGATA
TTATATCTTTCCCTGCAGAGTCTTCTGTTGTCATATTCAACTGGCTTAGG
TTCTGGGATCACAAGGTTGAAATTAAGAATGCGGGGAATTCAGGTGGATA
ATCAGTTGCCTTTAACTCCAACGCCTGTTCTGTTTAGACCACAGAGAGTC
GGGGATGAGACTGATTACATCCTCAAATTTTCGATTACGCAGCAATCCAA
TGGATCACTTGATTTATGTGTGTATCCATATATTGGCTTTCAAGGACCCG
AGAATTCTGCATTTTTGATTAACGTCCATGAACCAATAATTTGGCGCATT
CATGGGATGATTCAGCAGATCAACTTAAGCAGATTGTCGGAAACTGAAAG
CACTGCGGTTTCAGTTGATCCCATCTTTCAAATCGGTGTTTTCAATGTCT
CCGAAGTTCGCTTCAAAGTCTCCATGGCTATGTCACCAACTCAGCGACCA
GTTGGTGTTCTTGGGTTTTGGGCATCCTTGATGACTGCACTTGGAAACAC
TGAGAATATGCCAATTCGATTAAATCAAAGGTTCCAGGAGAATATACGCA
CAAGGCAAAGCGTACTCATGAGTAACGCTATTGCGAATATCAAGAAAGAT
ATTCTTGGTCAGCCTCTTCAACTGCTCTCAGGTGTTGACATACTGGGCAA
TGCCAGTAGTGCACTTGGGCATATGAGCAAAGGTGTTGCAGCTCTATCAA
TGGATAAGAAATTTATTCAAAGTCGGCAGAGACAAGATAGCAAAGGTGTG
GAGGACTTTGGCGATGTTATAAGAGATGGGGGTGGAGCTCTAGCAAAGGG
ATTTTTCCGAGGATTTACCGGAATTGTTACTAAACCTCTTGAAGGAGCCA
AAGCATCTGGAGTAGAGGGCTTTGTTCAAGGTGTTGGAAAAGGTATAATA
GGTGCCGCTGCGCAACCTGTCAGTGGAGTTCTGGATCTTTTGTCAAAAAC
CACTGAAGGTGCAAATGCTATGAGAATCAAAATTGCGTCTGCTATTGCGT
CAGAAGATCAACTCCTTCGCAGGAGGCTTCCCCGAGTAATTGGTGGCGAT
AATTTGCTAAGACCATATGATTTGTACAAAGCTCAGGGACAGGTGATACT
GCAACTAGCAGAATCTGTATCGTTCTTCCGGCAAGTTGACTTGTTCAAAG
TGCGTGGGAAGTTTGCCTTGTCGGATGCATATGAAGATCATTTTTTGCTC
CCTAAAGCAAAATATCTTCTTGTCACTCATAGAAGGATTATACTTTTGCA
ACAAGCATCCAGCATTATCGGGCATAAGAAGTTTAACCCAGTCAGAGATC
CATGCTCTGTTTTGTGGGATGTATTGTGGGATGACCTGATGACAATGGAA
TTAACTCATGGAAAGAAAGATCGGCCAGATTCAATACCTTCACGGATTAT
TCTTTACTTACAAGCTCGATCTGTAGATACTAAGGATCAAGTTCGCATTA
TAAAGTGCAACCGTGATTCTAATCAAGCCTTTGAAGTTTATACTTCGATT
GAGGAAGCTATGAATACTTATGGGCCAAACCAGGCAAAGGACTTGCTGAG
AAGGACTGCTGCCAAACCATACTCAGCCATTGTTGATTCTGCTAAGGCCG
AAGCTATCCCCAGAGATAACTTTTACTTCTCATCTCCCCAGCAGATGCCT
TCACCTATTTCTCACAGCTCAACTTTTGGCACTAATGCAAATTAGTTGTG
AAAGAAATATTATGGCGTGATCTTAGATAAAGTTTGAGTTGTATTTGTCA
AGATGGCTATCAGTACAAATGATTGAGAAATTTTGCATGACAAGTGAGCA
GTCGCTAAGCTGCTGACCCTTTGGAGACAAACTACATTCCATGTGTTTCT
GGAGAGCAGTTTTGAGCACTAACCCGAAAGACAAGGGAAAGGGTGCGACA
GAGCACCGCGATCAAGTCCGATGACATCGAGTAGTTGTACATACCTGCAT
ACATATATAGAATTGTATATATATATTTTAATTAATAGAACTTCAGCAGT
AGTTCAGGGAAAATGTATATATGACATGTAGCATATATTTTCACTGGCAG
GTCCTTTTCCAAGTTTTAAAAGAGGCCAGTATAAGTAGCTAATATATTAT
AGATGTAGAAGCAGCTGGACTACTTTGAGGTGAAGAGGGCTCCTGCATAT
TGTTGGGACTCAATAGTCCTCGTAGACCAACACATTTTATACAGCTCAAT
ATATTCATGATGATGTATTACACTATTATTAAGATGAAAAATAAATAAGC
TTTGGTGATTTATGGGGTATCTCGGTTTTGGACC

Sequence Length:

10784

Sequence Checksum:

007cd4ee3d658511b6c5afea4cfe315d

View location in JBrowse:

DCARv2_Chr7:928589..961166-

Protein Sequence:

MSVIVDQIKVPHPDYPSTRVSVQVPILGIHFSPVRYSRLMKLLNIINGTI
QNASQPVGGDFQADLAPWNPPDLSAEAQILVWKGIGYSVASWQPCFLVLS
GFHLYVLESERSQSYSRCSSMASKHVFEVPPTNVGGLASCIGVCARGIDS
QKALESFSTLIIKFRDEEKASWLRGLIRATYRASATPSVDVLGQHDDTVF
PGSRPINMKTADLVVNGTLIETKLSVYGKAGDEAPVKFKETIILEVLAGG
GKVHVVRCEGDLTVKVKLHSLKIKDELQATSNLSPQYLACSVQKDDNSLN
SPSSIEPQGNELLPTEDDDIFKDALPDFLSLSDSAEAIISEKDTTVGRTN
SADVFYEAEDVEDSHFVSLIFLTRSTSSPDYDGVDSQMIVSMSKLEFYFN
RPTLVALIGFGLDLSAANSESTVTDEDKNVNKELSENKLKTEESDNASVK
GLLGYGKGRAVFYLIMNVDSVTVYLNKEDGSQLAMFVQESFVLDLKVHPS
SISIEGTLGNLRLCDLSLGSDHYWAWLCDIRNQGAESLIQFKFHSYSAED
DDYEGYDYSLQCRLSAVRIVILYRFVQEISAYFMGLATPHTEEVVKYVDK
VGGFEWLIEKNEIDGGSALKLDLSLDTPIIIVPRNSMSKDFIQLDLGNLK
VRNEFSWHGYPENDPSAVHLDILDAEIIGINMAVGIDGCLGKPMIRDGQD
IHIYVRRSLRDVFRKVPTLALEVKVGLLHCVMSDKEYTIILDCFSKNMNE
EPNLPPSFRDNITSSKETIRLLADKVNANSQSILSRTVTIMAVEVEYALL
ELCNGIHEESPLAQIILEGLWVSYRMTSLSEADLYVTIPRFSILDIRPDT
KPEMRLMLGSCNDVSKQSSVGSLPFSIGFKRFDSKTSVSLNIPNSTMFVM
DYRWRLSSQLFVIRVQQPRVLVVPDFLIAVGEFLVPGLGAITGREELMDP
KNDPIGKKNGIVLLDPLYKQKEDVVQLSANSRLIADASAVDDYTYDGCGK
IIRLVEEAETKELPSNGFWPIIIIGRGKSLRFVNVKIENGFLLRKYTYLS
NESSYSVSTEDGVEISFLENNLSDDIKRSTDNMKELLLTSNTSDNIKSDS
SNIQSFSFEAQVVSPEFTFYDSRKSSLDDSTHGEKLLRAKLDFSFMFASK
ENDIWIRALFKDLTMEAGSGLIILDPVDISGGYTSVKDKTNISVISTDIY
IHLSLSVMSLVLNLQSQAAGAFQYGNSDLLSPCTHFDRLWVSQKENGRLN
NLTFWRPRAPLNYVVLGDCVTSRPIPPSYTVMAVSSTYGRVRKPLRFELI
GLFSAIQGYEDLEGNSTTRDCSIWKPIPPQGYTALGCVAHVGSQPPPTHI
VHCVRSDLVTSTRYSECIFYTSENQSFSSGFSIWLLDNVAGSFYAHPSTS
CPPIKICLDLNHLVLINSSRSHFAFESPSSSLDSRRENEYGEPNSQSANL
SGWDVVRSISKATNYYISTPNFERIWWDKGGDIRRPVSIWRPVPRPGYAI
LGDCIIEGLEPPALGIICKADNPEISAKPVQFTQVAHIARKGVDDAFFWY
PIAPPGYASLGCIVSRTDEAPALESFCCPRMDLVSQANILEGPLSRSSSS
RGSQCWSLWKVDNQAYTFLARSDLKRPATRLAFTFGDSVKPKTRDNITAE
MKLRCLSVTILDSLCGTMTPLFDVTISNLKLATHGRLEALNAVLISSAAA
STFNTHLEAWEPLVEPFDGIFKFETYDADAHPTSKFGKRARVAATSTLNI
NLSTANLNMFLESVISWRRQREFEQKAIQLNEEHHGHADDSNFSALDEED
LQTVTIENKLGCDIYLKKAEQDSNAVGLLHHNDHSSLWIPPPRYTDRLNV
AETRESHRYVAVQIIKAKALPIVDDGNSHKFFCALRLVVDSQETYQQKLF
PQSARTRCVRPLVSVSNGVDEGTACWNELFIFEVPRKGGAKLEVEVTNLA
AKAGKGEVVGASSFSVGHGANPLKKVASVKMLHQASEVQNIAAYPLRRTV
LSGSDDNHSQSSLVVSTSYFERKLVANVLSEVEEGNDVDRDIGFWVGLSP
KGSWESFRSFLPLSVITKTLNGDYIAVDVIMKNGKKHAVLRGLVTVINDS
DVKLEVTTCHASVIHTSNLSAENVVDALNPGSSCILPWKSALRGSDSCLL
VRPCTDDAHPPYSWGHLVNIGHSGGKEQSIDQGSFSRQNTLKHRNHMPTS
FKLSQLEKTDVFFCSSSPDRDQFWLSVCTDASALHTELNAPVYDWRISIN
SPLKLENRLPCPARFIVWEKLKNGNNIERQRGFMSSRETVNIHSADVQNL
IYVTLFIQGGWCLEKDPVLILDLSSNNHVSSFWMVRQQSRRLRVSIERDT
GGTIAAPKTVRFFVPYWISNESSLPLAYQVVEIEPLEASDANSLQRSKTG
RFGTTSMRIPSISADRNYFGSRKNLQVLEVIEDTSPTASMLSPQDYVGRG
GVMLFSSRNDGYLSPRVGIAVSIRDSENYSPGISLLDLEKKQRVDVKAFN
SDGSYYNLSAVLQMSSDRTKVIHFQQQTLFVNRVGCSLCLQQCDTQSLEW
IHPTDPPLQLRWQSLGRAEMLRLRMDGHSWSTPFSVGTEGVICISLTRNP
ASAPTQLRVEVRSGTMSSRCEVIFRPNSFSSPYRIENHSLFLPIRFQQVD
GASNSWQSLLPNASASFSWEDLGRPRQLELLVDGDDRSKSLKYSIDEVAD
HQPVFVNDEPTRVLRINILREDKVNVIKISDWKPENELQPDISRSSSFSS
IPVSENDVTLQQSTSNSEFHVIFEISELGLSIIDHTPEEILYLSLQSLLL
SYSTGLGSGITRLKLRMRGIQVDNQLPLTPTPVLFRPQRVGDETDYILKF
SITQQSNGSLDLCVYPYIGFQGPENSAFLINVHEPIIWRIHGMIQQINLS
RLSETESTAVSVDPIFQIGVFNVSEVRFKVSMAMSPTQRPVGVLGFWASL
MTALGNTENMPIRLNQRFQENIRTRQSVLMSNAIANIKKDILGQPLQLLS
GVDILGNASSALGHMSKGVAALSMDKKFIQSRQRQDSKGVEDFGDVIRDG
GGALAKGFFRGFTGIVTKPLEGAKASGVEGFVQGVGKGIIGAAAQPVSGV
LDLLSKTTEGANAMRIKIASAIASEDQLLRRRLPRVIGGDNLLRPYDLYK
AQGQVILQLAESVSFFRQVDLFKVRGKFALSDAYEDHFLLPKAKYLLVTH
RRIILLQQASSIIGHKKFNPVRDPCSVLWDVLWDDLMTMELTHGKKDRPD
SIPSRIILYLQARSVDTKDQVRIIKCNRDSNQAFEVYTSIEEAMNTYGPN
QAKDLLRRTAAKPYSAIVDSAKAEAIPRDNFYFSSPQQMPSPISHSSTFG
TNAN

Relationship:

There are 2 relationships.
Relationships
The mRNA, XM_017362729.1, is a part of gene, LOC108195777.
The polypeptide, XM_017362729.1, derives from mRNA, XM_017362729.1.

Cross Reference:


NCBI Gene	108195777
NCBI Nuccore	XM_017362729.1

Gene:

LOC108195777

Model Evidence:

Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns

Gbkey:

mRNA