XM_017361897.1 | CarrotOmics

Resource Type:

mRNA

Name:

XM_017361897.1

Identifier:

XM_017361897.1

Organism:

Daucus carota subspecies sativus

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
NCBI Daucus carota subsp. sativus Annotation Release 100	The RefSeq genome records for Daucus carota subsp. sativus were annotated by the NCBI Eukaryotic Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. This report presents statistics on the annotation products, the input data used in the pipeline and intermediate alignment results. View the full report at https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Daucus_carota_subsp._sativus/100/ Data from this analysis can be viewed in JBrowse here.

Transcript Id:

XM_017361897.1

Product:

uncharacterized LOC108194962

Sequence:

AACCCCGAAAAGGCCAAAAATTGTAGTCGACTGTCACTCACAAGCCACAA
ACGCATAAACGATCAACCTTCACCGACGTCGTATTGCCTTGCTTCCCAAG
AATTGAATCCAGGTCCTACTTCCCATCCATCCATCCCAGAGACCCGCGAA
CATGTATATCTCGTTTTCATAAACCCCACTCCACCTCTAATGATCTAATC
TCCAAACCCAACGCAATTTCAATGTCGATATAAACACAAACAATTTGTTC
TCTCTCGCTAATTAACTGTTAAAATTTTTACAAGCAATTTTCAATGTTCT
TCAACGACTGGCTTCAGCGGAAGCTAGCTTCGGTGCTACGTCCGTGGCTA
AGACAAGAAACGGAGCTTGAACTGAAGCTAGGGTTTCTTCGTTCTCACGG
CATCGCTAAAGACATCTGTTTCGACACTGCTGTTCTCACTCAGCAACTCG
ATGACTCGTCTCGCTTCGAGTTCACTGATTTTAGAATTGACGAGTTGAAA
CTCGGAGTGTCCAATTGGTCCTTCCCTGCTTTTCGAATTGATGTTAATGG
ACTCCATGTTACTCTCACACTACGGGATATAAGGGATGATGCTAGGGTGA
ATGAGAAGCAGCGAACAGCTGACAGGTCTGCAGACAATAGGAAGAAGGTC
CTATCTGAGATTGATCCAGAGGGTATTGCTTTAAATGATGCTATGGAGAG
TCTCTCGGCCATTATTTGCTCTAACAGTCGAAGAACTTCCCTCCTTTGTA
CCATACTTGGACATGGTCATCTGCGGATACGCCATGTTCATCTGTCAGTG
CAGTGTCTGACCTCAAATAATTCCTACAAATGTATGTTGGAGATGACAGA
TTTTGATATCAAATCAGGATTCATTGGTCATAGATGTTTTCTTCGAGCAG
TCATTAGTTCACTCTTATTCCCTTCTTCAGAAAATTCTTTCAAACTTGGT
GTTAGAGGTCTTACAGTTGGATTAAAGGATAAAGATAGCATTAGCAACAT
TTTTTCTTCGAGATATCTGCAAACTTTCATAACATTGAGAGATCTACACC
TTGTTAACTTCAACTTGTCTAATCCAGAATTAGAATTTACAGTTTCTCCA
GCACAAATTTTTATAATAGCAGCAATGAGTAAATTGTCAACCACAGATTC
CAAGTGTCCTCGGAATGGTAAGCAACTATGGAGTATAGCTGCAAGCAGAT
ATAATTCATTGCTTCCTGCCCGTAAATGGTCCTTTCAGAAACTAGTTGAT
GTTGTTTGTCTATGGCTGCGTTATGTACATGCTTACGAGCATTTACTTTC
ATCAGTAGGCTATCCTGTTGATAAGATGATGAGAAGATCTGTTATAATGA
TGTCTCGTGACAAACAATTTTCAATATTAGTTAAACAGAAGTGGAACGAA
ATATCGGCAATTGAGAAAGATCTGCCCGTGGAAGCTGCTGTGCTGGCCAG
ACGGTTAGTGCGATGCAGAGTAGCATCATCTGTTAATCAGTTCAAGGATA
TCTCTGTCGAGTCACTAGATAATAATAGCCACACCAGTTTTTTCTGGAAG
ATACTAAACTTGCTAGTTACTGTTTGGAGTTACATATGCAGCACCTGTTA
CTCAATCATACTACTTGCCCTTCCGCGAAGTCACTATATAGACCATTTGA
ATGATAATGGTCAAAGCATTGCATCTGACAATGATTACCTACAACATTGT
TTTATTGTGAACATTGGGATCATTTCAGCCACAATATATCCTGAAAAAGC
AGTTGAACACTCTGTTTCTAGAAGAAAGTCAGACATTGGGATCTCAAGAA
GAAAGTCAGACATTGGGATCTCAAATTCTAATTTGCTGTCGTTCTGTTTC
ACCCTTGACACATTTTACTTTCTTTATAAGGAGAATATTTTTGATCAATT
TCTGTCCTTTTCCTGCGGAAACTTGGAAGCTACATCGTCGCATGTCATGA
CAGATAGCTTAGACAATTATGATAGTTATCTCAAAGGGCTGAAAAAGAAA
TCTAATGATCCATTGCTTGCTTTGTGGGGTCAGCCAGCACAGGTTTTTGA
TAATTCCGAAGCAAATTCTTTTGCCTTTGTGGGAGGTCAAGTAGAAGAAA
TGTGGTCAACATGGAGAACTTCCTGTGCAGAACTCAAAGATGGTACAGTC
CTGTCTCCAGAGCACCCATTCATTCTCTGTGAGATTAAAAACTTCTTAAC
AGATCAAGGCTTCAGTGATAAGTGTTCTGGATTTAAGAAATGTTGTCTGG
TGATTGGTGAACTGAACCTTATCTTGGAATATGCATCAATAGTATCAATA
GTCCTTATTCTTAAGCAGATACAGAGTGCTCTTTACCCGAGTGACTGCAG
TTTGGCGGCCAATGTTCCTCCAGATACTCCAGTGACATGTGAGGATCCAC
TACGGAGGAGTTGGGATAATAAATATAATACATGTGCCAGTGAAATGGAG
TTTGAACTGTATAAATTGCTTCCACATCAACATATTCAAGCTGCAGTATT
CATTGCTGGGCCTCAAATAAAAATATCACTAAACAAAGAGGAATTTTTGG
TTAATGAAGCACATGGGAAAAATATGCATGATGATATTCGTCTTGTATTT
AATATCCGCAATGTTGAGCTTGGTGTTAAGCCAACTTTGGTTTCTGATCT
TGAATCATCATTTTGGGGCCAGGATGAGCCACCTTCGTGCCCCAAGTTGA
AAGAACCAGAACTAGCTTACAGTTCTCTGCCAGCTGAAGAAACTTGCAAA
TGTCAAACGAGAGGCACACTAGATGCGCACCTTAAAGTAAATGGGTTAAT
AGCTCATATCGACACTAAAAATCAGCAGGACCAAGTTATTGTATTAAATC
CAACAACAATACGTCTGTCATCCGTAAGGAAGGAGCTTCATTCGTTTGGT
GCTACAATTGTTGCATTCTCAGCAGGACTGCATTGTATTACTACTGAACT
TGCTGTTTTGATATTTATGGATGAATTTTCTATTTTAGTTAAGGTAGTTG
ATGGTTTAACTTCAATTTTTACGAGTACAATTACTATGTTTGATTCAAAT
GGTTATATGAATCCGGATGATTCAGGTAGAGACGAGATTGTGCAAGGTGA
TTCTGGAAATACAGGAACATTGGTTAGTGGAGTGAATTGGGAGAATATGA
TTGAATCAAGTACTGGATTTGTAATTAATTGTACATATGAGATAAAGGCC
ATCGATATCGTCCTTCATAAATCCAGGGATAGCAATTATAAGGATCATAC
ATCTGATACTTTAGGTAACAAAAAGCTGACCATGCATGAAGTGCTTGACT
GCGGAGTTAGTTTTTCTATTAAGGAATCACGTATTAGGATTTCATATGTG
GCGAGGGATGCAGACATTCTCGCTGGTTTTTCTGTGTTAAGGGCTGGCAT
TTTCAACTTCGTGAGTGATGTTGCTGGAAACTATGATCAATTTTATGAGA
GCAACTTGTTGCTACAATCAATGAAATGTGAAAAAGAATTGTCTCTTTCT
GGTTGTACGTTTGCTTTGTGGTTGAGATGCCTTGTGGGGGATTTTGCATT
TGAACATGTACAAAGTTCAAATGATGCTTTTGATTGTGACGGTGAAATTT
TGAATTTAGTAGAAGGATCCCCACTGGCAATTGATAATGAAGAATCATTA
ACTCTGTCGCCTAATATTAGTCAGAAATTCAATAGTACTGGACAGAACAT
TGGTGCAACATCAAGTCATAGGATGCTTATAAATATAAGCCTCAGTGAAA
TCTATTTTGCCGGAAGCATGGAAAAAGATCTCTTATTTGGAGAACATAAT
TTGAATAAGCTGAAGTTATCACTTTCTCTTGGAGCAAATGGTCGGAGAAT
ATCTTGCCATACGCAGGGTGGTTCTATTTTTCTTGAAGCAGAAGCGGTAG
CAATGTTCTTTCAGTGCTTGACATCATATGAACAGGGCCTTAGACAAGTT
TTTCCTGCTGCACCAGTACCCAAGGAAAACCTTAGAGCTGGAACAGTTAA
GGATGTGGTTGTACATAATAATCATCACAGCCAAGGGTTGGAGACTACAC
ATCAGACTGTAAATCAGGAAAAGGTGGACAAGTTGGTTATCAGTCTCTCT
GAAATTTCACTTGTGCTCGTGGCAAGAGATGAATCGGGTATACTTCAGGA
AATTCTTTTTGAGTTGGATGCTCATTTGGATGTTAAAATGGCTGAGAGGA
GAATTTTTTTGCTTCGTCTTTCAAGATTTTCAATTATTTCACGCATCCTT
CACGAGAGTATTGAACAACAAAGTTCCGAGATTCAAATTTCTCAACCTTC
TTATGAGATGTCAAATCATCCATCTTCCATAGCCGAAGATCCCACCATAC
CTATAAGTGGAGGTCCAACCACAGCATTTCAGCAAATGCGAGGAAATCAT
TCAGCTTTGGATGAAGCAGGCAGCTCAGGCCATTCTATAGCCCCTGTAGA
ATCGTATATAGATACCACCAGACCAAAAGTTTTTGGTTTAAGTCCTCAAA
ACTGCATACTAAAGCATACAAGCGCTTACCTTACACTCGAGAAGTTTATG
CCCAGGGATATCTATAGTCAACAATATTGGTTTGGGGGTGGTTCTATTTC
TGGGATTGAAATTACAATATCTCTTCAAGAGATACAGATAATTCTTTCCA
CCTTGGAAACAATGTCTGGATTTCTCAGTAAAAAGGCGACTAACAATGTA
GAGCAAAAGTACTTGATTAAAAATCAGGAACCTGAAAGAAAATTTGAAGA
TGTAGTTCCCGATGGGACTGTTGTTGCTCTACAAGACGTGCACCATCACA
CATATATTACAATTCAAGGTGGCCAAAACAGTTATTACATATCTGACAGG
AAGGAGCTTCATTCGTTTGGTGCTACAATTGTTGCATTCTCAGCAGGACT
GCATTGTATTACTACTGAACTTGCTGTTTTGATATTTATGGATGAATTTT
CTATTTTAGTTAAGGTAGTTGATGGTTTAACTTCAATTTTTACGAGTACA
ATTACTATGTTTGATTCAAATGGTTATATGAATCCGGATGATTCAGGTAG
AGACGAGATTGTGCAAGGTGATTCTGGAAATACAGGAACATTGGTTAGTG
GAGTGAATTGGGAGAATATGATTGAATCAAGTACTGGATTTGTAATTAAT
TGTACATATGAGATAAAGGCCATCGATATCGTCCTTCATAAATCCAGGGA
TAGCAATTATAAGGATCATACATCTGATACTTTAGGTAACAAAAAGCTGA
CCATGCATGAAGTGCTTGACTGCGGAGTTAGTTTTTCTATTAAGGAATCA
CGTATTAGGATTTCATATGTGGCGAGGGATGCAGACATTCTCGCTGGTTT
TTCTGTGTTAAGGGCTGGCATTTTCAACTTCGTGAGTGATGTTGCTGGAA
ACTATGATCAATTTTATGAGAGCAACTTGTTGCTACAATCAATGAAATGT
GAAAAAGAATTGTCTCTTTCTGGTTGTACGTTTGCTTTGTGGTTGAGATG
CCTTGTGGGGGATTTTGCATTTGAACATGTACAAAGTTCAAATGATGCTT
TTGATTGTGACGGTGAAATTTTGAATTTAGTAGAAGGATCCCCACTGGCA
ATTGATAATGAAGAATCATTAACTCTGTCGCCTAATATTAGTCAGAAATT
CAATAGTACTGGACAGAACATTGGTGCAACATCAAGTCATAGGATGCTTA
TAAATATAAGCCTCAGTGAAATCTATTTTGCCGGAAGCATGGAAAAAGAT
CTCTTATTTGGAGAACATAATTTGAATAAGCTGAAGTTATCACTTTCTCT
TGGAGCAAATGGTCGGAGAATATCTTGCCATACGCAGGGTGGTTCTATTT
TTCTTGAAGCAGAAGCGGTAGCAATGTTCTTTCAGTGCTTGACATCATAT
GAACAGGGCCTTAGACAAGTTTTTCCTGCTGCACCAGTACCCAAGGAAAA
CCTTAGAGCTGGAACAGTTAAGGATGTGGTTGTACATAATAATCATCACA
GCCAAGGGTTGGAGACTACACATCAGACTGTAAATCAGGAAAAGGTGGAC
AAGTTGGTTATCAGTCTCTCTGAAATTTCACTTGTGCTCGTGGCAAGAGA
TGAATCGGGTATACTTCAGGAAATTCTTTTTGAGTTGGATGCTCATTTGG
ATGTTAAAATGGCTGAGAGGAGAATTTTTTTGCTTCGTCTTTCAAGATTT
TCAATTATTTCACGCATCCTTCACGAGAGTATTGAACAACAAAGTTCCGA
GATTCAAATTTCTCAACCTTCTTATGAGATGTCAAATCATCCATCTTCCA
TAGCCGAAGATCCCACCATACCTATAAGTGGAGGTCCAACCACAGCATTT
CAGCAAATGCGAGGAAATCATTCAGCTTTGGATGAAGCAGGCAGCTCAGG
CCATTCTATAGCCCCTGTAGAATCGTATATAGATACCACCAGACCAAAAG
TTTTTGGTTTAAGTCCTCAAAACTGCATACTAAAGCATACAAGCGCTTAC
CTTACACTCGAGAAGTTTATGCCCAGGGATATCTATAGTCAACAATATTG
GTTTGGGGGTGGTTCTATTTCTGGGATTGAAATTACAATATCTCTTCAAG
AGATACAGATAATTCTTTCCACCTTGGAAACAATGTCTGGATTTCTCAGT
AAAAAGGCGACTAACAATGTAGAGCAAAAGTACTTGATTAAAAATCAGGA
ACCTGAAAGAAAATTTGAAGATGTAGTTCCCGATGGGACTGTTGTTGCTC
TACAAGACGTGCACCATCACACATATATTACAATTCAAGGTGGCCAAAAC
AATTACAATGTAGTTGGTTCGATACATTATTCCTTTGTGGAAGACAGGGC
CCTTTTCAGAGTGAAATATCACTATCAGAGGAAATGGGGTTCACAAGTAT
TGTGGATATCATTGACCTCTTTGTACGCTGAAAGTGATTCTGGGGAGCCA
TTACGACTGAATTGTCGTGCAGGATCAAGTTTTGTTGACATCTCTAGCTC
TTCTGATAGTGCATGGGCACTCTGGAAAGTAAATCCTTTTGACGCTGTCA
ATTATTATGGTGATACTGAAGTAGACTCGTATTGTCCGTTGGCAACCAAT
ATGTTTCACCTCATTAATAGGAAGAATGATTGTGGCATTGCTTTTGTTGA
TGACTCTTTTGAGTGCGTGAGCAAGCCTGGGAATCCATTCAAGCTGAAAG
TATTTCAGGACCATGCACTAGCTCGTGATATTTATATGTTAGATACCCAT
CCAGTGGAGGCTTTGGAGACTGGCATCAAAGAAGGCTCGGAGAGTACAGG
AAATCAAACGTGCATCTGTATCGAAATCGACAAATGTATCGTGACAATAG
TTCATGAAATTTCAACTACAAAGGAGAAGATCCCACTGCTGCAGCTATCT
ATCGTTTGTCAGGAACTCCTAATGCAGATTCTACAGATTAAAGCTAGGAT
TATGAGCAGATTGAATGTTGTGTTTTATTATTTTGATGGGCAGAGAAATT
TGTGGAGTGAACTGCTCTACCCTGCTGAATTAAGCATATTTTATCGCTGT
CGATTCCAAATTGCGGGTACGGAGACAGTTGTGCCTTCAGTGCCAGTTCA
TTTCTATGCTAAGATCAAGCAGCTTGACATATCAATGACGGAGCTTTCAC
TGGATATACTTCTCTTTGTCATTGGAGAATTGAATTTGGCTGGTCCCTTT
GCTGTAAAAAGTTCTGTGATATTGGCCAACTGCTGCAAGGTGGAGAACCA
ATCAGGCTTGACTCTACTTTGTCACTTTCATCAGAACCAATATGCTTCAA
TAGCGAGAAATCAAAGCAGTATGGTTTTCTTAAGGCATTTGGCTTCGGTA
AGTCAAACTTCCGATGCGTCTATCATCACAGTACAACTTACAGACCAGGG
ATCGTTCATGACTTCTCCGGTTCACATTTCACTTTCGGAAGCTAAAACGT
TTGCTTGGCGGACACGCATAGTTTCATCACAAGGGTCTAAAACTTACCCG
GGGCCATTTATTGTGGCTGAAGTTTCACAAAGAGGGGATGAGCTGTCTCT
TGCGGTTTCTCCTCTATTAAGAATACACAATGAAACCGACTTCTCTATGG
AGTTGCGATTTCAACGACCTGAACATAAGGAATCTGAATCTGCTTCTATA
ATACTCAAGGCTGGGGATGCAATTGATGATACTTTGGCAGCTTTCGGTGC
CATCAATTTGTCTGGTGGAACCAAGAAAGCATTGGTGTCTCTAAGTGTTG
GTAATTACTTGTTTTCTTTTAGACCTGAAATTGCCAAGGACTTGAGTAGC
CTCAGTAAATTACATTCAGTTGAGTGGTCAAATGACCTTAAAGGAGGAAA
GGCCGTTTATCTCTCTGGGTTATTCGATAAATTAGGCTACAAAGTGAGGA
AGGCATTATCTGCTGAGTCAGTAAAATGTTCCTTTAGTATTGCACATTGT
TCTGTGAATTTTGAAGAGGGACATATGGGTGACGTAGACTTCCTAATTCA
GAGCATTGGAAGGGATATTCCAGTTATACAACCTGATAGCACAGGATACA
CCTCCGGAAATAAGAATTCACATGTTGCATTACAAGAGCAGAAGGAAATT
TTTATTCTTCCTACTATTCAGATATCAAACTTATTGCAATCGGAGGTTGA
AGTGTTTTTGAGTGATAAAGATTCCCAAAACATTATTAGCTGTGACAAGA
TTGGCAAGTTCGCTATTGTTCCATGCGGATCTACTTCTAATTTATATGCT
AACCCTGCCACAATCTATTTCACTTTTACTTTGACTGCTTATAAATCAAG
TTGCAAACCAGTAAATTGTGCTGACTGGGTTAAAAAGTTACAGAAGCAGA
AATCTGATGTTAATAATCTGGACGTTGAGTTAGACTTTGGCAGTGGTAAA
TATTTTGCTCTCTTACGACTGGGTTTCAAGGATAACGGCATTCTGGAGGC
TGCTATCTTTACTCCGTACACCTTGAAGAATGATACTGAATTTCATTTGT
TTTGTTGTGGACCAAATTCGAAGCCCTTGCCAAGGTATGAAGCTGGAAAT
CTTAATTCTGAAATCCCTCCGGAGCTTGGAGCTTTACTACCTGCAAAGTC
AACAAGCTCATGGTTCATTAAATGCAACAAGGTGTGCCTATTCTTGTTGG
ACGGAAACGATTCTCACACAGTATTGGACCTAGACGCTCTATCCGGCCTC
ACAGAGATTGACCTGGAAGTAGAAGGTTCAGGTTGCAGATTTGTTACAAA
ATTGGGCGTGGCTTTGAAGCCGTCTGTGGGAAACGTTATTGTCCCATCAA
GAACAGTATCTATTAATCCTCGATATATTGTGTCCAATGAATCAGAAGAA
ATTATAATTGTCCAACAATGTTACTTGGAGGATGAAATGCAAGGGGTTAT
TACTGTTAATGGCAAACAGAGAACAGCAGTACATTTGCGGAATGTAACAG
GCAGCAAGAAGGAGATTGGTGTTTTTGACAAATTTCTCAGACATCATAAA
AGTGCTCGGGATGACACATTACTCTATGTTCAATTTAAGCCAAAAGGTGC
TGGGTTTGATTGGTCGGGGCCAGTATGTGTTACTTCATTGGGACGATTTT
TTCTTAAATTTAAAAGAATTAAAGATTATCCAGCACAAGACATCAAGAAT
AATGCAACAACCCTTGATCATGAATATTCTTCAGTCCATGTAATGGAAGA
AGATTCCACACTTGTTTTGCACTTTTACAGGCCTCCAAATACTAGTCTAC
CTTACCGGATTGAGAACTGCTTGGAAGATGCACCTATAACTTACTATCAG
AAGGGTACATCGGAACCTGAGGTAATTAGAGCCGGAGGTACTGTTAATTA
TGTCTGGGACGATTCGAATCTTCCTCATAAACTAGTCGTCCAGATAACTG
AAGTCCAGTTACTGCGTGAAATCAATTTGGATAAGCTAAGAGCATGGAAA
CCATTCTATAGAGCTGGGAAACAGAGAGGTTTGGGGTTGCAATTACCACT
GCATAGAAATCCAGGACACAAGAGAAGTAGTTTTGGGCAATTAAATGGTA
TAGAGATCATAACTTCAGGGTTCGAAGTGTATGCAGATGGACCTACGCGA
GTCTTGCGTATTTGCGAGTTTCCTGATAGTCATAAAGCAAATAGATCACT
TTATTCTGGTGCAAAGATGCAACTAAGGGTTTTTAATGCTGCAATCAGCA
TCCTAGAACCATCTAAAAAGGAGAGAGACACAGATGAGCTGCCCACCTAT
ACACCAATTATTGTTATAAGGCTTGGAAATATGGATATGGATTCATTACT
CACTAATCACCGTAAATGTAACAGTATCAGGGTGCAGTCTTTGAGTGTGG
ACGAAAAATGGATAGGAGCTCCCTTTGCATCAATGATCCGCAGGCATCAT
TCACAATACTCCGACGCAGATAGCAGCATGCTTCATATTGTGTTCAATCT
ACTTTCAACTAGTTCTGAAGTTAAACATGTGGAGTACTCGTCTATTGTTC
TTCAGCCATTTGATTTAAACCTTGATGAGGAGACGCTTATGAGAATCGTT
CCATTTTTGAGGACATCTCTCAGCGACCCACATACAAAGAGTCAACAATA
TTACTTTGATCATTTCGAGATCCACCCAATAAAGATCATTGCTAGCTTTC
TTCCAGGGGAGTTCTATTCCAGTTATAGCTCAACCCAAGAGACTTTGAGG
TCTTTACTGCATAGTGTAATAAAGATCCCTGCCATAAAACAAAAGAGTGT
AGAACTTAATGGGGTCCTGGTAACTCATGCTATGATAACCATACGAGAAT
TGTCTATCAAGTGTGCACAACATTATTCATGGTATGCTATGAGGGCGATC
TACATCGCAAAAGGAAGCCCATTGCTTCCGCCAGCCTTTGCTTCCATTTT
TGATGACTCTGCTTCATCTTCTCTTGATGTTTTTTTTGATCCATCTAGTG
GTTTGATTAATCTCCCTGGCCTTACCATAGGAACATTCAAGCTCATCAGC
AAAAGTATCGATAGTAAAGGTTTTTCAGGAACAAAACGTTATTTTGGTGA
TCTGGGGAAAACTTTGAAAGCAGCAGGGTCAAATATACTCTTTGCTGCTA
CCACTGAAATATCTGACTCTATTCTGAAGGGAGCAGAAACAAGTGGTTTC
AATGGAATGGTGAGTGGATTTCACCAAGGAGTACTCAAATTAGCCATGGA
GCCAACTTTACTAGGGACTGCTTTTATAGAAGGTGGACCAGATCGAAAGA
TTAAGCTCGACAGAAATCCAGGGGTTGATGAGTTATATATTGAAGGGTAC
CTGCAAGCTATGTTGGATGCTATGTACAAACAAGAATATCTTCGAGTTAG
AGTAATTGACGACCAGGTTATCTTGAAAAACCTACCCCCAAGCAGCTCTC
TTATAGAGGAGATCATGGATCGTGTAAAAGGCTTCTTAGTGAGCAAGACA
CTACTGAAAGGAGATTCTTCATCCTATCGTCCTTTGCGTCATGTTCGAGG
AGAAAGCGACTGGAAAATCGGACCGACAATTTTGACCCTGTGTGAGCACC
TTTTTGTGAGTTTTATGATCCGTGCTCTGCGAAAGCAAGCTGGCAAGGTT
ACAACCAAAATCAAGTTGAAGGAGAAATTGGAAGTTACTGATGGAAAACC
AATTGCCGACGCATCTGTTGGACAAGAACATAAAGGAAAGGGTAAGGTTA
TGTGGAGATTTGGTATAGGCAGGTTTGTCTTGTCTGGTATAATTGCATAC
CTGGATGGACGTTTGTGTCGTCGTATTCCTAATCCTATAGCAAGAAGAAT
AGTCAGTGGCTTTTTGTTAACTTTGCTTGACCAGAATGACCAATAATAAT
ATACAGTACTTATAATTTTTGTCA

Sequence Length:

11874

Sequence Checksum:

6fef364bb7835043eaff305b5fb1281a

View location in JBrowse:

DCARv2_Chr7:29573816..29609732-

Protein Sequence:

MFFNDWLQRKLASVLRPWLRQETELELKLGFLRSHGIAKDICFDTAVLTQ
QLDDSSRFEFTDFRIDELKLGVSNWSFPAFRIDVNGLHVTLTLRDIRDDA
RVNEKQRTADRSADNRKKVLSEIDPEGIALNDAMESLSAIICSNSRRTSL
LCTILGHGHLRIRHVHLSVQCLTSNNSYKCMLEMTDFDIKSGFIGHRCFL
RAVISSLLFPSSENSFKLGVRGLTVGLKDKDSISNIFSSRYLQTFITLRD
LHLVNFNLSNPELEFTVSPAQIFIIAAMSKLSTTDSKCPRNGKQLWSIAA
SRYNSLLPARKWSFQKLVDVVCLWLRYVHAYEHLLSSVGYPVDKMMRRSV
IMMSRDKQFSILVKQKWNEISAIEKDLPVEAAVLARRLVRCRVASSVNQF
KDISVESLDNNSHTSFFWKILNLLVTVWSYICSTCYSIILLALPRSHYID
HLNDNGQSIASDNDYLQHCFIVNIGIISATIYPEKAVEHSVSRRKSDIGI
SRRKSDIGISNSNLLSFCFTLDTFYFLYKENIFDQFLSFSCGNLEATSSH
VMTDSLDNYDSYLKGLKKKSNDPLLALWGQPAQVFDNSEANSFAFVGGQV
EEMWSTWRTSCAELKDGTVLSPEHPFILCEIKNFLTDQGFSDKCSGFKKC
CLVIGELNLILEYASIVSIVLILKQIQSALYPSDCSLAANVPPDTPVTCE
DPLRRSWDNKYNTCASEMEFELYKLLPHQHIQAAVFIAGPQIKISLNKEE
FLVNEAHGKNMHDDIRLVFNIRNVELGVKPTLVSDLESSFWGQDEPPSCP
KLKEPELAYSSLPAEETCKCQTRGTLDAHLKVNGLIAHIDTKNQQDQVIV
LNPTTIRLSSVRKELHSFGATIVAFSAGLHCITTELAVLIFMDEFSILVK
VVDGLTSIFTSTITMFDSNGYMNPDDSGRDEIVQGDSGNTGTLVSGVNWE
NMIESSTGFVINCTYEIKAIDIVLHKSRDSNYKDHTSDTLGNKKLTMHEV
LDCGVSFSIKESRIRISYVARDADILAGFSVLRAGIFNFVSDVAGNYDQF
YESNLLLQSMKCEKELSLSGCTFALWLRCLVGDFAFEHVQSSNDAFDCDG
EILNLVEGSPLAIDNEESLTLSPNISQKFNSTGQNIGATSSHRMLINISL
SEIYFAGSMEKDLLFGEHNLNKLKLSLSLGANGRRISCHTQGGSIFLEAE
AVAMFFQCLTSYEQGLRQVFPAAPVPKENLRAGTVKDVVVHNNHHSQGLE
TTHQTVNQEKVDKLVISLSEISLVLVARDESGILQEILFELDAHLDVKMA
ERRIFLLRLSRFSIISRILHESIEQQSSEIQISQPSYEMSNHPSSIAEDP
TIPISGGPTTAFQQMRGNHSALDEAGSSGHSIAPVESYIDTTRPKVFGLS
PQNCILKHTSAYLTLEKFMPRDIYSQQYWFGGGSISGIEITISLQEIQII
LSTLETMSGFLSKKATNNVEQKYLIKNQEPERKFEDVVPDGTVVALQDVH
HHTYITIQGGQNSYYISDRKELHSFGATIVAFSAGLHCITTELAVLIFMD
EFSILVKVVDGLTSIFTSTITMFDSNGYMNPDDSGRDEIVQGDSGNTGTL
VSGVNWENMIESSTGFVINCTYEIKAIDIVLHKSRDSNYKDHTSDTLGNK
KLTMHEVLDCGVSFSIKESRIRISYVARDADILAGFSVLRAGIFNFVSDV
AGNYDQFYESNLLLQSMKCEKELSLSGCTFALWLRCLVGDFAFEHVQSSN
DAFDCDGEILNLVEGSPLAIDNEESLTLSPNISQKFNSTGQNIGATSSHR
MLINISLSEIYFAGSMEKDLLFGEHNLNKLKLSLSLGANGRRISCHTQGG
SIFLEAEAVAMFFQCLTSYEQGLRQVFPAAPVPKENLRAGTVKDVVVHNN
HHSQGLETTHQTVNQEKVDKLVISLSEISLVLVARDESGILQEILFELDA
HLDVKMAERRIFLLRLSRFSIISRILHESIEQQSSEIQISQPSYEMSNHP
SSIAEDPTIPISGGPTTAFQQMRGNHSALDEAGSSGHSIAPVESYIDTTR
PKVFGLSPQNCILKHTSAYLTLEKFMPRDIYSQQYWFGGGSISGIEITIS
LQEIQIILSTLETMSGFLSKKATNNVEQKYLIKNQEPERKFEDVVPDGTV
VALQDVHHHTYITIQGGQNNYNVVGSIHYSFVEDRALFRVKYHYQRKWGS
QVLWISLTSLYAESDSGEPLRLNCRAGSSFVDISSSSDSAWALWKVNPFD
AVNYYGDTEVDSYCPLATNMFHLINRKNDCGIAFVDDSFECVSKPGNPFK
LKVFQDHALARDIYMLDTHPVEALETGIKEGSESTGNQTCICIEIDKCIV
TIVHEISTTKEKIPLLQLSIVCQELLMQILQIKARIMSRLNVVFYYFDGQ
RNLWSELLYPAELSIFYRCRFQIAGTETVVPSVPVHFYAKIKQLDISMTE
LSLDILLFVIGELNLAGPFAVKSSVILANCCKVENQSGLTLLCHFHQNQY
ASIARNQSSMVFLRHLASVSQTSDASIITVQLTDQGSFMTSPVHISLSEA
KTFAWRTRIVSSQGSKTYPGPFIVAEVSQRGDELSLAVSPLLRIHNETDF
SMELRFQRPEHKESESASIILKAGDAIDDTLAAFGAINLSGGTKKALVSL
SVGNYLFSFRPEIAKDLSSLSKLHSVEWSNDLKGGKAVYLSGLFDKLGYK
VRKALSAESVKCSFSIAHCSVNFEEGHMGDVDFLIQSIGRDIPVIQPDST
GYTSGNKNSHVALQEQKEIFILPTIQISNLLQSEVEVFLSDKDSQNIISC
DKIGKFAIVPCGSTSNLYANPATIYFTFTLTAYKSSCKPVNCADWVKKLQ
KQKSDVNNLDVELDFGSGKYFALLRLGFKDNGILEAAIFTPYTLKNDTEF
HLFCCGPNSKPLPRYEAGNLNSEIPPELGALLPAKSTSSWFIKCNKVCLF
LLDGNDSHTVLDLDALSGLTEIDLEVEGSGCRFVTKLGVALKPSVGNVIV
PSRTVSINPRYIVSNESEEIIIVQQCYLEDEMQGVITVNGKQRTAVHLRN
VTGSKKEIGVFDKFLRHHKSARDDTLLYVQFKPKGAGFDWSGPVCVTSLG
RFFLKFKRIKDYPAQDIKNNATTLDHEYSSVHVMEEDSTLVLHFYRPPNT
SLPYRIENCLEDAPITYYQKGTSEPEVIRAGGTVNYVWDDSNLPHKLVVQ
ITEVQLLREINLDKLRAWKPFYRAGKQRGLGLQLPLHRNPGHKRSSFGQL
NGIEIITSGFEVYADGPTRVLRICEFPDSHKANRSLYSGAKMQLRVFNAA
ISILEPSKKERDTDELPTYTPIIVIRLGNMDMDSLLTNHRKCNSIRVQSL
SVDEKWIGAPFASMIRRHHSQYSDADSSMLHIVFNLLSTSSEVKHVEYSS
IVLQPFDLNLDEETLMRIVPFLRTSLSDPHTKSQQYYFDHFEIHPIKIIA
SFLPGEFYSSYSSTQETLRSLLHSVIKIPAIKQKSVELNGVLVTHAMITI
RELSIKCAQHYSWYAMRAIYIAKGSPLLPPAFASIFDDSASSSLDVFFDP
SSGLINLPGLTIGTFKLISKSIDSKGFSGTKRYFGDLGKTLKAAGSNILF
AATTEISDSILKGAETSGFNGMVSGFHQGVLKLAMEPTLLGTAFIEGGPD
RKIKLDRNPGVDELYIEGYLQAMLDAMYKQEYLRVRVIDDQVILKNLPPS
SSLIEEIMDRVKGFLVSKTLLKGDSSSYRPLRHVRGESDWKIGPTILTLC
EHLFVSFMIRALRKQAGKVTTKIKLKEKLEVTDGKPIADASVGQEHKGKG
KVMWRFGIGRFVLSGIIAYLDGRLCRRIPNPIARRIVSGFLLTLLDQNDQ

Relationship:

There are 2 relationships.
Relationships
The mRNA, XM_017361897.1, is a part of gene, LOC108194962.
The polypeptide, XM_017361897.1, derives from mRNA, XM_017361897.1.

Cross Reference:


NCBI Gene	108194962
NCBI Nuccore	XM_017361897.1

Gene:

LOC108194962

Model Evidence:

Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments

Gbkey:

mRNA