CarrotOmics | Genomic, Genetic, and Breeding Resources for Carrot Research

Data Template

Template Type	PHENOTYPE
Template	qtl_trait_data
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Headers

Column	Description
* dataset_name	name of the QTL trait study, the dataset_name should exist in 'dataset_name' column of the 'Dataset' sheet. A-B-C-D system A: common name of species (scientific name if not available and genus name if cross-species) B: trait_name (usually an article report multiple QTL for a trait) C: Last name of the corresponding author D: publish year
* stock_name	Name of the population or parent of the population, The name should exist in the 'stock_name' column of the 'Stock' sheet.
* genus	Genus to which the stock belongs to.
* species	Species name. Enter 'sp.' to represent one unknown species, 'spp.' to represent multiple unknown species.
* descriptor	Name of the trait descriptor. It should exist in 'descriptor_name' column of the 'Descriptor' sheet.
trait_descriptor_set	The name of the trait descriptor set that is stored in cv table of chado
site_name	Location/environment where the plant was grown. Site_name should exist in 'site_name' column of the 'Site' sheet. If the phenotypic measurement has been done in multiple years, create multiple site_code even if it is done in the same location.
* mean	The mean value of the traits for each parent and progeny.
min_value	The minimum value of the traits for each parent and progeny.
max_value	The maximum value of the traits for each parent and progeny.
standard_deviation
coefficient_of_variation
skewness
h2
CI_90	Confidence Intervals
comments
reference
##property_name	Special columns (##) : followed by name (cvterm name) of the property.

* Required field

cvterms

cv.name	cvterm.name
MAIN	ci_90
MAIN	coefficient_of_variation
MAIN	comments
MAIN	h2
MAIN	phenotyping
MAIN	skewness
MAIN	standard_deviation
MAIN	statistical

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