CarrotOmics | Genomic, Genetic, and Breeding Resources for Carrot Research

Data Template

Template Type	MTL
Template	mtl
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Headers

Column	Description
* MTL_name	Trait locus name given by curators.
* genus	The genus of the phenotyping material.
* species	The species of the phenotyping material.
infraspecific_type	Infraspecific type of the stock as defined in the taxonomic_rank CV
infraspecific_name	Infraspecific name of the stock
trait_name	Descriptive name for trait, it should be one of the crop trait ontology and should match a term in 'Trait' sheet.
trait_descriptor_set	Name of the crop trait ontology. A site-wide crop trait ontology can be specified in the loader. If not provided, the site trait ontology will be used.
GB_ID	Associated genbank ID if available.
alias	Other names used for the trait. Multiple aliases, separated by comma, can be added.
screening_method	Any specific method for the phenotypic inspection.
description	Desctiption for the trait. The more detail, the better. You can describe the phenotype of the various cultivar and provide the pictures.
published_symbol	Published symbol for the MTL.
colocalized_marker	Marker locus that colocalizes with the MTL.
neighboring_marker	Marker locus that is mapped near MTL. Multiple loci can be added, separated by a semicolon (;).
contact	Contact person for the MTL. It should match 'contact_name' in Contact sheet.
image	Image_ID of any associated image (Detailed info in 'Image' sheet.) Multiple images, separated by comma, can be added.
* reference	pub_id for the reference that describes MTL. Multiple references, separated by comma, can be added.
##property_name	Special columns (##) : followed by name (cvterm name) of the property.

* Required field

cvterms

cv.name	cvterm.name
MAIN	alias
MAIN	description
MAIN	marker_locus
MAIN	published_symbol
MAIN	screening_method
sequence	genetic_marker
sequence	heritable_phenotypic_marker
relationship	adjacent_to
relationship	located_in

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