MKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPR
VTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDL
IKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLG
ASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIV
VYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLR
GQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQS
IEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRI
HVEVVSTSSRMSLYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQ
IEMQWRTSS*
| Relationships |
|---|
| The polypeptide, DCAR_009493, derives from mRNA, DCAR_009493. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A834GMM4 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7138583.1}))
HSP 1 Score: 701.819 bits (1810), Expect = 0.000e+0
Identity = 333/410 (81.22%), Postives = 371/410 (90.49%), Query Frame = 0
Query: 1 MKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 409
MKVYTT EKELIMEPS+KWAGNPN+ +A KAFGLRATVQ VDLQVFACPR+TLKPLVP+FPCFAKILVSLMEKPHVDFGLK+LGAD MSIPGLYR VQ+LIKDQVANMYLWPK LEV IMDPAKA KRPVGIL VKV++A+KLKKKD +GASDPYVKLKL+EDKLPSKKTTVKHKNLNPEWNEEF++VVKDP+SQ LEI VYDWEQVG HDKMG+NV+P+K+L P+E KV+TLDL KNMDP DVQNEK RGQ+V+E +YKPF E+P +E ++EVQKAPDGTP GGGLLV+I+HE Q +EGK+HTNP RLLFRGE ++TK VKKNRDPRW+EEFQFMLEEPPTNDRIHVEVVSTSSRM L+PKE LGYVDI LSDV+ NKRINERYHLIDSKNG +QIEMQWRTSS
Sbjct: 4 MKVYTTEEKELIMEPSMKWAGNPNITIAAKAFGLRATVQVVDLQVFACPRITLKPLVPSFPCFAKILVSLMEKPHVDFGLKVLGADAMSIPGLYRVVQELIKDQVANMYLWPKTLEVPIMDPAKAMKRPVGILNVKVLKAMKLKKKDLMGASDPYVKLKLTEDKLPSKKTTVKHKNLNPEWNEEFNIVVKDPQSQALEINVYDWEQVGKHDKMGLNVLPLKELAPEEPKVVTLDLLKNMDPNDVQNEKSRGQIVLELMYKPFTDDEMPNQSEETNEVQKAPDGTPDGGGLLVVIVHEAQDVEGKHHTNPQVRLLFRGEERRTKPVKKNRDPRWEEEFQFMLEEPPTNDRIHVEVVSTSSRMGLLHPKEALGYVDISLSDVVSNKRINERYHLIDSKNGRVQIEMQWRTSS 413
Match: A0A438J3D5 ((Synaptotagmin-2 {ECO:0000313|EMBL:RVX03426.1}))
HSP 1 Score: 701.434 bits (1809), Expect = 0.000e+0
Identity = 336/410 (81.95%), Postives = 373/410 (90.98%), Query Frame = 0
Query: 1 MKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 409
MKVY T EKELIME S+KWAGNPN+ VA+KAFGLRATVQ VDLQVFA PR+TLKPLVP+FPCFA I VSLMEKPHVDFGLKLLGADVM+IPGLYR VQ+LIKDQVANMYLWPK LEV IMDPAKA K+PVGIL VKVVRA+KLKKKD +GASDPYVK+KLSEDKLPSKKTTVKHKNLNPEWNEEF++VVKDPESQ LE++VYDWEQVG HDKMGMNV+P+K+L PDE KVLTLDL KNMDP DVQNEK RGQ+V+EA+YKPFK +EIP D E+ + ++KAP+GTPAGGGLLVII+HE Q +EGK+HTNP RLLFRGE +KTK VKKNRDPRW+EEFQFMLEEPPTNDRIHVEVVSTSSRM L+PKETLGYVDI LSDV+ NKRINE+YHLIDSKNG IQIE+QWRTS+
Sbjct: 169 MKVYATDEKELIMELSMKWAGNPNITVAVKAFGLRATVQVVDLQVFAAPRITLKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADVMAIPGLYRLVQELIKDQVANMYLWPKTLEVPIMDPAKAMKKPVGILSVKVVRAMKLKKKDIMGASDPYVKMKLSEDKLPSKKTTVKHKNLNPEWNEEFNMVVKDPESQALEVIVYDWEQVGKHDKMGMNVIPLKELTPDEPKVLTLDLLKNMDPNDVQNEKSRGQIVLEALYKPFKDTEIPKDLEDPNAIEKAPEGTPAGGGLLVIIVHEAQEVEGKHHTNPYVRLLFRGEERKTKYVKKNRDPRWEEEFQFMLEEPPTNDRIHVEVVSTSSRMGLLHPKETLGYVDINLSDVVSNKRINEKYHLIDSKNGKIQIELQWRTST 578
Match: E0CQ92 ((Uncharacterized protein {ECO:0000313|EMBL:CBI19897.3}))
HSP 1 Score: 700.664 bits (1807), Expect = 0.000e+0
Identity = 336/410 (81.95%), Postives = 373/410 (90.98%), Query Frame = 0
Query: 1 MKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 409
MKVY T EKELIME S+KWAGNPN+ VA+KAFGLRATVQ VDLQVFA PR+TLKPLVP+FPCFA I VSLMEKPHVDFGLKLLGADVM+IPGLYR VQ+LIKDQVANMYLWPK LEV IMDPAKA K+PVGIL VKVVRA+KLKKKD +GASDPYVK+KLSEDKLPSKKTTVKHKNLNPEWNEEF++VVKDPESQ LE++VYDWEQVG HDKMGMNV+P+K+L PDE KVLTLDL KNMDP DVQNEK RGQ+V+EA+YKPFK +EIP D E+ + ++KAP+GTPAGGGLLVII+HE Q +EGK+HTNP RLLFRGE +KTK VKKNRDPRW+EEFQFMLEEPPTNDRIHVEVVSTSSRM L+PKETLGYVDI LSDV+ NKRINE+YHLIDSKNG IQIE+QWRTS+
Sbjct: 130 MKVYATDEKELIMELSMKWAGNPNITVAVKAFGLRATVQVVDLQVFAAPRITLKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADVMAIPGLYRLVQELIKDQVANMYLWPKTLEVPIMDPAKAMKKPVGILSVKVVRAMKLKKKDIMGASDPYVKMKLSEDKLPSKKTTVKHKNLNPEWNEEFNMVVKDPESQALEVIVYDWEQVGKHDKMGMNVIPLKELTPDEPKVLTLDLLKNMDPNDVQNEKSRGQIVLEALYKPFKDTEIPKDLEDPNAIEKAPEGTPAGGGLLVIIVHEAQEVEGKHHTNPYVRLLFRGEERKTKYVKKNRDPRWEEEFQFMLEEPPTNDRIHVEVVSTSSRMGLLHPKETLGYVDINLSDVVSNKRINEKYHLIDSKNGKIQIELQWRTST 539
Match: A0A200RAU5 ((C2 calcium-dependent membrane targeting {ECO:0000313|EMBL:OVA19834.1}))
HSP 1 Score: 699.123 bits (1803), Expect = 0.000e+0
Identity = 334/410 (81.46%), Postives = 374/410 (91.22%), Query Frame = 0
Query: 1 MKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 409
MKVY T EKELIMEP LKWAGNPNV VAIKAFGL+ATVQ VDLQVFA PR+TLKPLVP+FPCFAKILVSLMEKPHVDFG+KLLGAD MSIPGLYRFVQ+LIKDQVANMYLWPK LEV IMDPAKA+KRPVGIL VKV+RA KLKKKD +GASDPYVKLKL+EDKLPSKKTTVKHKNLNPEWNEEF++VVKDPESQ LE+ VYDWEQVG HDKMGMNV+P+KDL P+ESKV+TLDL KNMDP DVQNEK RGQ+VVE IYKPFK ++P D E+S+ V+KAP+GTP+GGGLLV+I+HE Q +EGK+HTNP R+LFRGE K+TK VKKNRDPRW+EEFQFMLEEPPT+DR+HVEV+STSSRM L+PKETLGYV+I LSDV+ NKRINE+YHLIDSKNG IQIE+QWRTS+
Sbjct: 130 MKVYVTDEKELIMEPCLKWAGNPNVTVAIKAFGLKATVQVVDLQVFAAPRITLKPLVPSFPCFAKILVSLMEKPHVDFGIKLLGADAMSIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKASKRPVGILNVKVLRATKLKKKDLMGASDPYVKLKLTEDKLPSKKTTVKHKNLNPEWNEEFNIVVKDPESQALELNVYDWEQVGKHDKMGMNVIPLKDLTPEESKVMTLDLLKNMDPNDVQNEKSRGQIVVEVIYKPFKEEDMPKDIEDSNTVEKAPEGTPSGGGLLVVIVHEAQDVEGKHHTNPYVRILFRGEEKRTKHVKKNRDPRWEEEFQFMLEEPPTSDRLHVEVISTSSRMGLLHPKETLGYVEINLSDVVSNKRINEKYHLIDSKNGRIQIELQWRTST 539
Match: A0A5J5ACN6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8528765.1}))
HSP 1 Score: 696.812 bits (1797), Expect = 0.000e+0
Identity = 335/410 (81.71%), Postives = 368/410 (89.76%), Query Frame = 0
Query: 1 MKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 409
MKVY+T EKELIMEPS+KWAGNPN+ +A+KAFGLRATVQ VDLQV A PR+TLKPLVP+FPCFAKILVSLMEKPHVDFGLKLLGAD MSIPGLYRFVQ+LIKDQVANMYLWPK LEV IMDPAKA KRPVGIL VKV+RA+KLKKKD LGASDPYVKLKL+EDKLPSKKTTVKHKNLNPEWNEEFH+VVKDPESQ LE VYDWEQVG HDKMG NV+P+KDL PDE KV+TLDL KNMDP DVQNEK RGQ+++E +Y+PF EIP ++E+ + V KAP+GTP GGGLLVII+HE Q +EGK+HTNP RLLFRGE K+TK VKKNRDPRW+EEFQFMLEEPPTNDRIHVEV+STSSRM L+PKE LGYVDI LSDV+ NKRINERYHLIDSKNG IQIEMQWRTSS
Sbjct: 130 MKVYSTEEKELIMEPSVKWAGNPNITIAVKAFGLRATVQIVDLQVSASPRITLKPLVPSFPCFAKILVSLMEKPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKAMKRPVGILNVKVLRAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTTVKHKNLNPEWNEEFHLVVKDPESQALEFHVYDWEQVGKHDKMGQNVIPLKDLTPDEPKVMTLDLLKNMDPNDVQNEKSRGQIMIEMMYRPFADDEIPKESEDPNAVDKAPEGTPDGGGLLVIIVHEAQDLEGKHHTNPHVRLLFRGEEKRTKNVKKNRDPRWEEEFQFMLEEPPTNDRIHVEVISTSSRMGLLHPKEALGYVDINLSDVVSNKRINERYHLIDSKNGRIQIEMQWRTSS 539
Match: A0A6I9TEJ3 ((synaptotagmin-2 {ECO:0000313|RefSeq:XP_011083467.1}))
HSP 1 Score: 693.73 bits (1789), Expect = 0.000e+0
Identity = 329/409 (80.44%), Postives = 367/409 (89.73%), Query Frame = 0
Query: 1 MKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMSLYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 409
MKVY T EKELIME LKWA NPN+LVA+KAFGLRATVQ +DLQVFACPR+TLKPLVP+FPCFA I VSLMEKPHVDFG+KLLGAD MSIPG YR VQ++IKDQVANMYLWPK LEVQIMDPAKA K+PVGIL V VVRA+KL+KKD LGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEF VVKDPE+Q LE+VVYDWEQVG+HDKMG+NV+P+KDL P+E K +TL+L KN++P DVQNEK RGQLVVE YKPFK +E+P D E++D VQKAP+GTP GGGLLVII+HE Q +EGKNHTNPSAR+LFRGE +KTK VKKNRDPRW+EEFQFML+EPPTNDR+HVEV+STS R L+ KETLGYVDIYLSDV+ NKRINERYHLIDSKNG IQIEMQWRT+S
Sbjct: 130 MKVYNTEEKELIMELGLKWAANPNILVAVKAFGLRATVQVLDLQVFACPRITLKPLVPSFPCFANIHVSLMEKPHVDFGVKLLGADAMSIPGAYRIVQEIIKDQVANMYLWPKRLEVQIMDPAKAMKKPVGILHVNVVRAMKLRKKDLLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFTFVVKDPEAQALELVVYDWEQVGSHDKMGLNVIPLKDLTPEEPKTITLELLKNLNPDDVQNEKSRGQLVVEVNYKPFKDNELPADVEDADSVQKAPEGTPEGGGLLVIIVHEAQDLEGKNHTNPSARILFRGEERKTKVVKKNRDPRWEEEFQFMLDEPPTNDRVHVEVLSTSKRSLLHAKETLGYVDIYLSDVVSNKRINERYHLIDSKNGRIQIEMQWRTAS 538
Match: A0A2R6R3P0 ((Synaptotagmin-2 like {ECO:0000313|EMBL:PSS19856.1}))
HSP 1 Score: 693.345 bits (1788), Expect = 0.000e+0
Identity = 330/410 (80.49%), Postives = 370/410 (90.24%), Query Frame = 0
Query: 1 MKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 409
MKVY T EKELIMEPS+KWAGNPN+++A KAFGLRATVQ VDLQVFA PR+TLKPLVP+FPCFAKILVSLMEKPHVDFGLK+LGAD MSIPGLYRFVQ+LIKDQ+ANMYLWPK LEV IMDPAKA KRPVGIL VK+VRA+KLKKKD LGASDPYVKLKL+EDKLPSKKTTVKHKNLNPEWNEEF++VVKDP+SQ LE+ VYDWEQVG HDKMG+NVVP+++L PDE KV+TLDL KNMDP D QNEK RGQ+V+E IYKPFK E+P DTE S+ V+KAP+GTP GGGLLV+I+HE Q +EGK+HTNP RLLFRGE ++TK VKKNRDPRW+EEFQFM++EPPTNDRIHVEVVS SSRM L+PKE LGYVDI LSDV+ NKRINERYHLIDSKNG +QIE+QWRTSS
Sbjct: 130 MKVYLTEEKELIMEPSMKWAGNPNIIIAAKAFGLRATVQVVDLQVFASPRITLKPLVPSFPCFAKILVSLMEKPHVDFGLKVLGADAMSIPGLYRFVQELIKDQIANMYLWPKTLEVPIMDPAKAMKRPVGILSVKIVRAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTTVKHKNLNPEWNEEFNLVVKDPQSQALEVNVYDWEQVGKHDKMGLNVVPLQELTPDEPKVVTLDLLKNMDPNDAQNEKSRGQIVLELIYKPFKDDEMPKDTEESNAVEKAPEGTPDGGGLLVVIVHEAQDLEGKHHTNPQVRLLFRGEERRTKPVKKNRDPRWEEEFQFMMDEPPTNDRIHVEVVSNSSRMGLLHPKEALGYVDINLSDVVSNKRINERYHLIDSKNGRVQIELQWRTSS 539
Match: A0A6I9TFG6 ((synaptotagmin-2 {ECO:0000313|RefSeq:XP_011083585.1}))
HSP 1 Score: 692.96 bits (1787), Expect = 0.000e+0
Identity = 329/409 (80.44%), Postives = 367/409 (89.73%), Query Frame = 0
Query: 1 MKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMSLYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 409
MKVY T EKELIME LKWA NPN+LVA+KAFGLRATVQ +DLQVFACPR+TLKPLVP+FPCFA I VSLMEKPHVDFG+KLLGAD MSIPG YR VQ++IKDQVANMYLWPK LEVQIMDPAKA K+PVGIL V VVRA+KL+KKD LGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEF VVKDPE+Q LE+VVYDWEQVG+HDKMG+NV+P+KDL P+E K +TL+L KN++P DVQNEK RGQLVVE YKPFK +E+P D E++D VQKAP+GTP GGGLLVII+HE Q +EGKNHTNPSAR+LFRGE +KTK VKKNRDPRW+EEFQFML+EPPTNDR+HVEV+STS R L+ KETLGYVDIYLSDV+ NKRINERYHLIDSKNG IQIEMQWRT+S
Sbjct: 130 MKVYNTEEKELIMELGLKWAANPNILVAVKAFGLRATVQVLDLQVFACPRITLKPLVPSFPCFANIHVSLMEKPHVDFGVKLLGADAMSIPGAYRIVQEIIKDQVANMYLWPKRLEVQIMDPAKAMKKPVGILHVNVVRAMKLRKKDLLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFTFVVKDPEAQALELVVYDWEQVGSHDKMGLNVIPLKDLTPEEPKTITLELLKNLNPDDVQNEKSRGQLVVEINYKPFKDNELPADVEDADSVQKAPEGTPEGGGLLVIIVHEAQDLEGKNHTNPSARILFRGEERKTKVVKKNRDPRWEEEFQFMLDEPPTNDRVHVEVLSTSKRSLLHAKETLGYVDIYLSDVVSNKRINERYHLIDSKNGRIQIEMQWRTAS 538
Match: A0A438E492 ((Synaptotagmin-2 {ECO:0000313|EMBL:RVW42489.1}))
HSP 1 Score: 692.575 bits (1786), Expect = 0.000e+0
Identity = 331/410 (80.73%), Postives = 370/410 (90.24%), Query Frame = 0
Query: 1 MKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 409
MKVY T EKELIME S+KWAGNPN+ VA+KAFGLRATVQ VDLQVFA PR+TLKPLVP+FPCFA I VSLMEKPHVDFGLKLLGADVM+IPGLYR VQ+LIKDQVANMYLWPK LEV IMDPAKA K+PVGIL VKVVRA+KLKKKD +GASDPYVK+KL+EDKLPSKKTTVK KNLNPEWNEEF++VVKDPESQ LE+ VYDWEQVG HDKMGMNV+P+K+L PDE KVLTLDL KN+DP DVQNEK RGQ+V+EA+YKPFK +EIP D E+ + ++KAPDGTPAGGGLLV+I+HE Q +EGK+HTNP RLLFRGE +KTK +KKNRDPRW+EEF FMLEEPPTNDRIHVEVVSTSSRM L+PKETLGYVDI LSDV+ NKRINE+YHLIDSKNG IQIE+QWRTS+
Sbjct: 128 MKVYATDEKELIMELSMKWAGNPNITVAVKAFGLRATVQVVDLQVFAAPRITLKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADVMAIPGLYRLVQELIKDQVANMYLWPKTLEVPIMDPAKAMKKPVGILSVKVVRAMKLKKKDLMGASDPYVKMKLTEDKLPSKKTTVKLKNLNPEWNEEFNMVVKDPESQALEVNVYDWEQVGKHDKMGMNVIPLKELTPDEPKVLTLDLLKNLDPNDVQNEKSRGQIVLEALYKPFKDTEIPKDLEDPNAIEKAPDGTPAGGGLLVVIVHEAQEVEGKHHTNPYVRLLFRGEERKTKYIKKNRDPRWEEEFSFMLEEPPTNDRIHVEVVSTSSRMGLLHPKETLGYVDINLSDVVSNKRINEKYHLIDSKNGKIQIELQWRTST 537
Match: A0A7N2KSX0 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:QL02p012108:mrna}))
HSP 1 Score: 689.493 bits (1778), Expect = 0.000e+0
Identity = 326/410 (79.51%), Postives = 369/410 (90.00%), Query Frame = 0
Query: 1 MKVYTTAEKELIMEPSLKWAGNPNVLVAIKAFGLRATVQAVDLQVFACPRVTLKPLVPNFPCFAKILVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQDLIKDQVANMYLWPKALEVQIMDPAKAAKRPVGILQVKVVRALKLKKKDFLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFHVVVKDPESQVLEIVVYDWEQVGTHDKMGMNVVPIKDLLPDESKVLTLDLRKNMDPGDVQNEKLRGQLVVEAIYKPFKGSEIPLDTENSDEVQKAPDGTPAGGGLLVIIIHEGQSIEGKNHTNPSARLLFRGEVKKTKTVKKNRDPRWDEEFQFMLEEPPTNDRIHVEVVSTSSRMS-LYPKETLGYVDIYLSDVIKNKRINERYHLIDSKNGMIQIEMQWRTSS 409
MKVYTT +KELIMEP +KWAGNPN+ +A KAFGL+ATVQ VDLQVFACPR+TLKPLVP FPCFAKI VSLMEKPHVDFGLKLLGAD M+IPGLYRFVQ+LIKDQVA MYLWPKALEV I+DP KA RPVGIL VK++RA+KLK+KD LG+SDPYVK KL+EDKLPSKKTTVKH +LNPEWNEEFHV VKDPESQ LE++VYDWEQ+G HDKMGMNV+P+K+L P+E KV+TLDL KNMDP DVQNEK RGQ+VVE +YKPFK EIP+D ++S+E+QKAP+GTPAGGGLLV+IIHE Q +EGK+HTNP RLLFRGE KKTK VKKNRDPRW+EEFQFMLEEPPTNDR+H+EVVS SSRM L+PKETLGYVDI LSDV+ NKRINE+Y+LIDSKNG IQIE+QWRTSS
Sbjct: 130 MKVYTTEDKELIMEPVVKWAGNPNITIAAKAFGLKATVQVVDLQVFACPRITLKPLVPTFPCFAKIYVSLMEKPHVDFGLKLLGADAMAIPGLYRFVQELIKDQVAKMYLWPKALEVPILDPTKAMIRPVGILNVKILRAMKLKRKDLLGSSDPYVKFKLTEDKLPSKKTTVKHNHLNPEWNEEFHVAVKDPESQALELMVYDWEQIGKHDKMGMNVIPLKELTPEEPKVMTLDLLKNMDPNDVQNEKSRGQIVVEVLYKPFKEDEIPVDVQDSNELQKAPEGTPAGGGLLVVIIHEAQDVEGKHHTNPYVRLLFRGEEKKTKHVKKNRDPRWEEEFQFMLEEPPTNDRLHLEVVSASSRMGILHPKETLGYVDINLSDVVSNKRINEKYNLIDSKNGRIQIELQWRTSS 539
| Match Name | Stats | Description |
|---|---|---|
| A0A834GMM4 | E-Value: 0.000e+0, PID: 81.22 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7138... [more] |
| A0A438J3D5 | E-Value: 0.000e+0, PID: 81.95 | (Synaptotagmin-2 {ECO:0000313|EMBL:RVX03426.1})[more] |
| E0CQ92 | E-Value: 0.000e+0, PID: 81.95 | (Uncharacterized protein {ECO:0000313|EMBL:CBI1989... [more] |
| A0A200RAU5 | E-Value: 0.000e+0, PID: 81.46 | (C2 calcium-dependent membrane targeting {ECO:0000... [more] |
| A0A5J5ACN6 | E-Value: 0.000e+0, PID: 81.71 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8528... [more] |
| A0A6I9TEJ3 | E-Value: 0.000e+0, PID: 80.44 | (synaptotagmin-2 {ECO:0000313|RefSeq:XP_011083467.... [more] |
| A0A2R6R3P0 | E-Value: 0.000e+0, PID: 80.49 | (Synaptotagmin-2 like {ECO:0000313|EMBL:PSS19856.1... [more] |
| A0A6I9TFG6 | E-Value: 0.000e+0, PID: 80.44 | (synaptotagmin-2 {ECO:0000313|RefSeq:XP_011083585.... [more] |
| A0A438E492 | E-Value: 0.000e+0, PID: 80.73 | (Synaptotagmin-2 {ECO:0000313|EMBL:RVW42489.1})[more] |
| A0A7N2KSX0 | E-Value: 0.000e+0, PID: 79.51 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
Pages
back to top| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |