MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYC
WQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFI
SVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEV
IGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLV
STYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHS
PDVSSWEGCSDYSTCSGYLAWNFVAGDADNYRDGISEDEHSIDNVEMWFY
NGLDAQDAGFDWPQSP*
| Relationships |
|---|
| The polypeptide, DCAR_011673, derives from mRNA, DCAR_011673. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5B7A0Y9 ((Uncharacterized protein {ECO:0000313|EMBL:MPA49341.1}))
HSP 1 Score: 462.611 bits (1189), Expect = 9.104e-163
Identity = 221/321 (68.85%), Postives = 270/321 (84.11%), Query Frame = 0
Query: 1 MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYCWQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFISVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEVIGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLVSTYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHSPDVSSWEGCSDYSTCSGYLAWNFVAGDADNY----RDGISEDEHSIDNVEMWFYNG-LDAQDAGFDWPQSP 316
ME+GCN R WDEL+PDALGLIF LSL+E+LTV+PRVCKSWG AVMGPYCWQ+IDIEEWS++ PEN+DRMLQMLI RSCGSLRKLC++GLSTD+ +SFI+ HAK+L+TLR+PRS ISDS+++QVAG+ SSIT+LD+SYC IGAP LEVIGKHC+FL+ LRR MHPLEVI K+SQDDEALAIAATMP+L+HLE+AYLLV T SV+ IL NC L+LLDVRGCWNV LD K + NF L+VVGP+V + ++ W+ CSDYS S Y+AW+FVAG+ D++ DG+ EDE ++++VEMWFY+G DA DAGFDWPQSP
Sbjct: 1 MEEGCNFRHWDELIPDALGLIFRNLSLEEMLTVIPRVCKSWGNAVMGPYCWQEIDIEEWSQHCQPENLDRMLQMLIARSCGSLRKLCISGLSTDQSFSFIADHAKSLQTLRLPRSEISDSIVEQVAGRLSSITFLDVSYCRKIGAPALEVIGKHCKFLTGLRRTMHPLEVIDKLSQDDEALAIAATMPKLKHLEMAYLLVCTKSVLAILANCHELELLDVRGCWNVHLDEKFMKNFTRLKVVGPIVEHYG--MNGWDNCSDYSGSSSYMAWDFVAGEIDDFYDENSDGVWEDEQNMEDVEMWFYDGFFDAVDAGFDWPQSP 319
Match: A0A6P6TC40 ((F-box protein FBW2-like isoform X1 {ECO:0000313|RefSeq:XP_027075280.1, ECO:0000313|RefSeq:XP_027075281.1}))
HSP 1 Score: 446.817 bits (1148), Expect = 2.201e-156
Identity = 215/319 (67.40%), Postives = 264/319 (82.76%), Query Frame = 0
Query: 1 MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYCWQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFISVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEVIGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLVSTYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHSPDVSSWEGCSDYSTCSGYLAWNFVAGDADNY---RDGISEDEHSIDNVEMWFYNGLDAQDAGFDWPQSP 316
ME+GC+ R WDEL+PD LGLIF LSL E+LTVVP VCKSW +AVMGPYCWQ+IDIEEWS++ PENID+MLQ+LI RSCGS RKLCV+G+S D +++I+ HAK L+TLR+PRS IS S+++QVAG S++T+LDLSYCI IGA LE IGK+C+FL+ LRRIMHPLEVI K+SQDDEALAIA+TMP+L+HLEIAYLLVST SV+EILTNCR L+LLDVRGC+NV+LD V FP L++VGP VVD+ D++ W+ CSDYS SGYLAW+FVAG D+Y DG DE I++VEMWFY+ ++A DAG+DWPQSP
Sbjct: 12 MEEGCDFRPWDELIPDTLGLIFRNLSLLEILTVVPGVCKSWRKAVMGPYCWQEIDIEEWSQHCSPENIDQMLQLLITRSCGSFRKLCVSGISNDLSFAYIANHAKCLQTLRLPRSQISHSIVEQVAGMLSTLTFLDLSYCIKIGAEALEAIGKNCKFLTGLRRIMHPLEVIDKLSQDDEALAIASTMPKLKHLEIAYLLVSTSSVIEILTNCRQLELLDVRGCFNVNLDENFVKKFPRLKLVGPNVVDYY-DMNGWDSCSDYSGSSGYLAWDFVAGMGDDYDEISDGYWGDEQQIEDVEMWFYDDVEAMDAGYDWPQSP 329
Match: A0A068TZX6 ((Uncharacterized protein {ECO:0000313|EMBL:CDP01489.1}))
HSP 1 Score: 446.047 bits (1146), Expect = 2.572e-156
Identity = 215/319 (67.40%), Postives = 264/319 (82.76%), Query Frame = 0
Query: 1 MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYCWQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFISVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEVIGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLVSTYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHSPDVSSWEGCSDYSTCSGYLAWNFVAGDADNY---RDGISEDEHSIDNVEMWFYNGLDAQDAGFDWPQSP 316
ME+GC+ R WDEL+PD LGLIF LSL E+LTVVP VCKSW +AVMGPYCWQ+IDIEEWS++ PENID+MLQ+LI RSCGS RKLCV+G+S D +++I+ HAK L+TLR+PRS IS S+++QVAG S++T+LDLSYCI IGA LE IGK+C+FL+ LRRIMHPLEVI K+SQDDEALAIA+TMP+L+HLEIAYLLVST SV+EILTNCR L+LLDVRGC+NV+LD V FP L++VGP VVD+ D++ W+ CSDYS SGYLAW+FVAG D+Y DG DE I++VEMWFY+ ++A DAG+DWPQSP
Sbjct: 1 MEEGCDFRPWDELIPDTLGLIFRNLSLLEILTVVPGVCKSWRKAVMGPYCWQEIDIEEWSQHCSPENIDQMLQLLITRSCGSFRKLCVSGISNDLSFAYIANHAKCLQTLRLPRSQISHSIVEQVAGMLSTLTFLDLSYCIKIGAEALEAIGKNCKFLTGLRRIMHPLEVIDKLSQDDEALAIASTMPKLKHLEIAYLLVSTSSVIEILTNCRQLELLDVRGCFNVNLDENFVKKFPRLKLVGPNVVDYY-DMNGWDSCSDYSGSSGYLAWDFVAGMGDDYDEISDGYWGDEQQIEDVEMWFYDDVEAMDAGYDWPQSP 318
Match: A0A6P6TA45 ((F-box protein FBW2-like isoform X2 {ECO:0000313|RefSeq:XP_027075287.1, ECO:0000313|RefSeq:XP_027075288.1}))
HSP 1 Score: 446.047 bits (1146), Expect = 2.572e-156
Identity = 215/319 (67.40%), Postives = 264/319 (82.76%), Query Frame = 0
Query: 1 MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYCWQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFISVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEVIGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLVSTYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHSPDVSSWEGCSDYSTCSGYLAWNFVAGDADNY---RDGISEDEHSIDNVEMWFYNGLDAQDAGFDWPQSP 316
ME+GC+ R WDEL+PD LGLIF LSL E+LTVVP VCKSW +AVMGPYCWQ+IDIEEWS++ PENID+MLQ+LI RSCGS RKLCV+G+S D +++I+ HAK L+TLR+PRS IS S+++QVAG S++T+LDLSYCI IGA LE IGK+C+FL+ LRRIMHPLEVI K+SQDDEALAIA+TMP+L+HLEIAYLLVST SV+EILTNCR L+LLDVRGC+NV+LD V FP L++VGP VVD+ D++ W+ CSDYS SGYLAW+FVAG D+Y DG DE I++VEMWFY+ ++A DAG+DWPQSP
Sbjct: 1 MEEGCDFRPWDELIPDTLGLIFRNLSLLEILTVVPGVCKSWRKAVMGPYCWQEIDIEEWSQHCSPENIDQMLQLLITRSCGSFRKLCVSGISNDLSFAYIANHAKCLQTLRLPRSQISHSIVEQVAGMLSTLTFLDLSYCIKIGAEALEAIGKNCKFLTGLRRIMHPLEVIDKLSQDDEALAIASTMPKLKHLEIAYLLVSTSSVIEILTNCRQLELLDVRGCFNVNLDENFVKKFPRLKLVGPNVVDYY-DMNGWDSCSDYSGSSGYLAWDFVAGMGDDYDEISDGYWGDEQQIEDVEMWFYDDVEAMDAGYDWPQSP 318
Match: A0A5J5AKY6 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8530829.1}))
HSP 1 Score: 445.662 bits (1145), Expect = 4.411e-156
Identity = 224/321 (69.78%), Postives = 272/321 (84.74%), Query Frame = 0
Query: 1 MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYCWQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFISVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEVIGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLVSTYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHSPDVSSWEGCSDYSTCSGYLAWNFVAGDADNYR----DGISEDEHSIDNVEMWFYNGL-DAQDAGFDWPQSP 316
ME+GC++R WDEL+PDALGLIF LSLQEVLTV+PRVCKSWG AVMGPYCWQ+IDIEEWS++ PEN+DRMLQMLI RSC SLRKLCV+GLS+D+ +SFI+ HAK+L+TLR+PRS ISDS++++VAG+ SS+T LDLSYC IGAPGLE IGKHC+FL++LRR MHPLE+I K+SQDDEALAIAATMP+L HLE+AYLLV T SV+ IL NCR L+LLDVRGCWNV LD K V NF GL+V+GP +VDH ++ W+ SDYS S Y+AW+FVAG+ D+Y DG+ EDE ++++VEMWFY+GL DA DAGFDWPQSP
Sbjct: 1 MEEGCDLRHWDELIPDALGLIFRNLSLQEVLTVIPRVCKSWGNAVMGPYCWQEIDIEEWSQHCQPENLDRMLQMLIARSCDSLRKLCVSGLSSDQSFSFIADHAKSLQTLRLPRSEISDSIVERVAGRLSSLTVLDLSYCRKIGAPGLEAIGKHCKFLTRLRRTMHPLEMIDKLSQDDEALAIAATMPKLRHLEMAYLLVGTKSVLAILENCRDLELLDVRGCWNVHLDEKFVKNFTGLKVIGP-IVDHYG-MNGWDSSSDYSGSSSYMAWDFVAGEMDDYYDEILDGVWEDEQNMEDVEMWFYDGLFDAVDAGFDWPQSP 319
Match: A0A6P6TLU3 ((F-box protein FBW2-like isoform X2 {ECO:0000313|RefSeq:XP_027078536.1, ECO:0000313|RefSeq:XP_027078537.1}))
HSP 1 Score: 444.506 bits (1142), Expect = 1.128e-155
Identity = 214/319 (67.08%), Postives = 263/319 (82.45%), Query Frame = 0
Query: 1 MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYCWQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFISVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEVIGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLVSTYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHSPDVSSWEGCSDYSTCSGYLAWNFVAGDADNY---RDGISEDEHSIDNVEMWFYNGLDAQDAGFDWPQSP 316
ME+GC+ R WDEL+PD LGLIF LSL E+LTVVP VCKSW +AVMGPYCWQ+IDIEEWS++ PENID+MLQ+LI RSCGS RKLCV+G+S D +++I+ HAK L+TLR+PRS IS S+++QVA S++T+LDLSYCI IGA LE IGK+C+FL+ LRRIMHPLEVI K+SQDDEALAIA+TMP+L+HLEIAYLLVST SV+EILTNCR L+LLDVRGC+NV+LD V FP L++VGP VVD+ D++ W+ CSDYS SGYLAW+FVAG D+Y DG DE I++VEMWFY+ ++A DAG+DWPQSP
Sbjct: 1 MEEGCDFRPWDELIPDTLGLIFRNLSLLEILTVVPGVCKSWRKAVMGPYCWQEIDIEEWSQHCSPENIDQMLQLLITRSCGSFRKLCVSGISNDLSFAYIANHAKCLQTLRLPRSQISHSIVEQVAAMLSTLTFLDLSYCIKIGAEALEAIGKNCKFLTGLRRIMHPLEVIDKLSQDDEALAIASTMPKLKHLEIAYLLVSTSSVIEILTNCRQLELLDVRGCFNVNLDENFVKKFPRLKLVGPNVVDYY-DMNGWDSCSDYSGSSGYLAWDFVAGMGDDYDEISDGYWGDEQQIEDVEMWFYDDVEAMDAGYDWPQSP 318
Match: A0A6I9U990 ((F-box protein FBW2 {ECO:0000313|RefSeq:XP_011097547.1, ECO:0000313|RefSeq:XP_011097548.1}))
HSP 1 Score: 444.121 bits (1141), Expect = 1.318e-155
Identity = 213/316 (67.41%), Postives = 257/316 (81.33%), Query Frame = 0
Query: 1 MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYCWQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFISVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEVIGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLVSTYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHSPDVSSWEGCSDYSTCSGYLAWNFVAGDADNYRDGISEDEHSIDNVEMWFYNGLDAQDAGFDWPQSP 316
M++G + R WDEL+PDALGLIF LSL EVLTVVPRVCKSWGRAVMGPYCWQ+IDIEEWS + PE +DRML++LI RSCGSLRKL +GL++D FI+ HA++L+TLR+PRS I+DS+M++ AG S+IT LDLSYCIHIGAP LE IGKHC+ L+ LRR+MHP+EVIGK+SQDDEALAIAATMP+L+HLEI YLLV T SVVEIL NC L+LLDVRGCWNVSLD + + FP L+VVGPLV D+ D++ W+ CSDYS S YLAW+FVAGD D EDEH I++VEM FY+ ++ DAG+DWPQSP
Sbjct: 1 MDEGSDFRKWDELIPDALGLIFKNLSLLEVLTVVPRVCKSWGRAVMGPYCWQEIDIEEWSTNRKPEIVDRMLRLLIPRSCGSLRKLSFSGLASDESIFFIANHAQSLQTLRLPRSKINDSVMEKAAGMLSTITSLDLSYCIHIGAPALEAIGKHCKSLTTLRRVMHPVEVIGKLSQDDEALAIAATMPRLKHLEITYLLVDTSSVVEILKNCNQLELLDVRGCWNVSLDEEFMKRFPRLKVVGPLVEDYC-DMNRWDSCSDYSGSSAYLAWDFVAGDYAEMSDDFWEDEHQIEDVEMRFYDDVNVVDAGYDWPQSP 315
Match: A0A6P6TJ39 ((F-box protein FBW2-like isoform X1 {ECO:0000313|RefSeq:XP_027078528.1, ECO:0000313|RefSeq:XP_027078529.1}))
HSP 1 Score: 444.891 bits (1143), Expect = 1.354e-155
Identity = 214/319 (67.08%), Postives = 263/319 (82.45%), Query Frame = 0
Query: 1 MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYCWQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFISVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEVIGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLVSTYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHSPDVSSWEGCSDYSTCSGYLAWNFVAGDADNY---RDGISEDEHSIDNVEMWFYNGLDAQDAGFDWPQSP 316
ME+GC+ R WDEL+PD LGLIF LSL E+LTVVP VCKSW +AVMGPYCWQ+IDIEEWS++ PENID+MLQ+LI RSCGS RKLCV+G+S D +++I+ HAK L+TLR+PRS IS S+++QVA S++T+LDLSYCI IGA LE IGK+C+FL+ LRRIMHPLEVI K+SQDDEALAIA+TMP+L+HLEIAYLLVST SV+EILTNCR L+LLDVRGC+NV+LD V FP L++VGP VVD+ D++ W+ CSDYS SGYLAW+FVAG D+Y DG DE I++VEMWFY+ ++A DAG+DWPQSP
Sbjct: 12 MEEGCDFRPWDELIPDTLGLIFRNLSLLEILTVVPGVCKSWRKAVMGPYCWQEIDIEEWSQHCSPENIDQMLQLLITRSCGSFRKLCVSGISNDLSFAYIANHAKCLQTLRLPRSQISHSIVEQVAAMLSTLTFLDLSYCIKIGAEALEAIGKNCKFLTGLRRIMHPLEVIDKLSQDDEALAIASTMPKLKHLEIAYLLVSTSSVIEILTNCRQLELLDVRGCFNVNLDENFVKKFPRLKLVGPNVVDYY-DMNGWDSCSDYSGSSGYLAWDFVAGMGDDYDEISDGYWGDEQQIEDVEMWFYDDVEAMDAGYDWPQSP 329
Match: A0A2G9H5X3 (F-box domain-containing protein {ECO:0000259|Pfam:PF00646})
HSP 1 Score: 441.425 bits (1134), Expect = 2.345e-154
Identity = 213/320 (66.56%), Postives = 260/320 (81.25%), Query Frame = 0
Query: 1 MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYCWQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFISVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEVIGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLVSTYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHSPDVSSWEGCSDYSTCSGYLAWNFVAGDADN----YRDGISEDEHSIDNVEMWFYNGLDAQDAGFDWPQSP 316
M++G + R WDEL+PDALGLIF LSL EVLTVVPRVCKSW RA+MGPYCWQ+IDI+EWSR PE +DRMLQ+LI RSCGSLRKL V+G+ +D+ FI+ HA++LRTLR+PRS I+DS+M++ AG S+IT LDLSYCI+IGA LE IGKHC+ L+ LRR+MHPLEVI K SQDDEALAIA TMP+L+HLEIAYLL+ T SVVEIL NC+ L+LLDVRGCWNV+LD K + FP L+VVGPLV+D D++ W+ CSDYS SGYLAW+FVAGD D+ DG ED+ +++VEMWFY+ +A+DAGFDWPQSP
Sbjct: 1 MDEGTDFRKWDELIPDALGLIFKNLSLLEVLTVVPRVCKSWNRAIMGPYCWQEIDIDEWSRSCKPEIVDRMLQLLISRSCGSLRKLSVSGIVSDQSILFIANHAQSLRTLRLPRSEINDSIMERTAGSLSAITCLDLSYCINIGAQALEAIGKHCKSLTSLRRVMHPLEVINKHSQDDEALAIATTMPKLKHLEIAYLLIDTSSVVEILKNCKNLELLDVRGCWNVNLDEKFIKKFPKLKVVGPLVMD-CYDMNGWDNCSDYSGSSGYLAWDFVAGDLDDDYAEMLDGFWEDDPPLEDVEMWFYDDFNAEDAGFDWPQSP 319
Match: A0A5J5BVG2 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8546788.1}))
HSP 1 Score: 434.491 bits (1116), Expect = 1.003e-151
Identity = 212/318 (66.67%), Postives = 258/318 (81.13%), Query Frame = 0
Query: 1 MEKGCNVRCWDELLPDALGLIFDKLSLQEVLTVVPRVCKSWGRAVMGPYCWQQIDIEEWSRYQPPENIDRMLQMLIRRSCGSLRKLCVTGLSTDRMYSFISVHAKTLRTLRIPRSTISDSMMKQVAGKFSSITYLDLSYCIHIGAPGLEVIGKHCQFLSKLRRIMHPLEVIGKISQDDEALAIAATMPQLEHLEIAYLLVSTYSVVEILTNCRLLKLLDVRGCWNVSLDTKLVHNFPGLEVVGPLVVDHSPDVSSWEGCSDYSTCSGYLAWNFVAGDADNYRDGIS----EDEHSIDNVEMWFYNG-LDAQDAGFDWP 313
ME G N + WD+L+PDALGLIF LSLQE+LTV+P VCKSWG VMGPYCWQ+IDIEEWSR+ PE +D+MLQMLI RSC SLRKLCV+GLSTDR +S I+ HAK+L+TLR+P S IS+S+++QVAG+ SS+T+LD+SYC IGAP LE IGKHC+FL++LRR MHPLE+I K+SQDDEALAIAATMP+L+HLE+AYLLVST SV+ IL NCR L+LLDVRGCWNV LD K V NF L+VVGPLV H + + W+ C DYS S Y+AW+FVAG+ D+Y D IS ED+ I++VEMWFY+ +A DAGFDWP
Sbjct: 1 MEGGFNFQHWDQLIPDALGLIFRHLSLQELLTVIPGVCKSWGNVVMGPYCWQEIDIEEWSRHCRPEKLDQMLQMLIARSCSSLRKLCVSGLSTDRSFSLIADHAKSLQTLRLPSSEISNSIVEQVAGRLSSLTFLDVSYCRMIGAPALEAIGKHCKFLTRLRRTMHPLEMIDKLSQDDEALAIAATMPKLKHLELAYLLVSTKSVLAILANCRELELLDVRGCWNVYLDEKFVKNFSRLKVVGPLVDGH--ETNGWDTCLDYSGSSSYMAWDFVAGEMDDYYDEISDGFWEDDQYIEDVEMWFYDDFFEAVDAGFDWP 316
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7A0Y9 | E-Value: 9.104e-163, PID: 68.85 | (Uncharacterized protein {ECO:0000313|EMBL:MPA4934... [more] |
| A0A6P6TC40 | E-Value: 2.201e-156, PID: 67.40 | (F-box protein FBW2-like isoform X1 {ECO:0000313|R... [more] |
| A0A068TZX6 | E-Value: 2.572e-156, PID: 67.40 | (Uncharacterized protein {ECO:0000313|EMBL:CDP0148... [more] |
| A0A6P6TA45 | E-Value: 2.572e-156, PID: 67.40 | (F-box protein FBW2-like isoform X2 {ECO:0000313|R... [more] |
| A0A5J5AKY6 | E-Value: 4.411e-156, PID: 69.78 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8530... [more] |
| A0A6P6TLU3 | E-Value: 1.128e-155, PID: 67.08 | (F-box protein FBW2-like isoform X2 {ECO:0000313|R... [more] |
| A0A6I9U990 | E-Value: 1.318e-155, PID: 67.41 | (F-box protein FBW2 {ECO:0000313|RefSeq:XP_0110975... [more] |
| A0A6P6TJ39 | E-Value: 1.354e-155, PID: 67.08 | (F-box protein FBW2-like isoform X1 {ECO:0000313|R... [more] |
| A0A2G9H5X3 | E-Value: 2.345e-154, PID: 66.56 | F-box domain-containing protein {ECO:0000259|Pfam:... [more] |
| A0A5J5BVG2 | E-Value: 1.003e-151, PID: 66.67 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8546... [more] |
Pages
back to top| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |