MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSL
GPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRV
VDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGH
EDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQA
KAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVEN
TVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQE
DFVDACAGLTYARVEGKA*
| Relationships |
|---|
| The polypeptide, DCAR_022950, derives from mRNA, DCAR_022950. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A6L5B8U1 (PLCXc domain-containing protein {ECO:0000259|SMART:SM00148})
HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0
Identity = 291/318 (91.51%), Postives = 304/318 (95.60%), Query Frame = 0
Query: 1 MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSLGPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVVDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGHEDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQEDFVDACAGLTYARVEGKA 318
MG QVTKQVDRRKAISVEKKTL +L ESSGTDFPGS Y PADRK WM+ LGPEKM INKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRV+D+RVQEDRKVCHGVLLTYGIDVV+KDVKKFLSETESEIIILEIRTEFGH+DPPEFEKYLEGELGE L+HQDDHVF KTI+E+LPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESN+KHLGEQQ VTSRKFFYRVENTVTPQADNPILCVKPVTNRIH+YHRLFI+QCFSRGIADRLQIFSTDFI+EDFVDAC GLTYARVEG
Sbjct: 1 MGAQVTKQVDRRKAISVEKKTLYSLHESSGTDFPGSTYSPADRKKWMAGLGPEKMHINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVIDVRVQEDRKVCHGVLLTYGIDVVIKDVKKFLSETESEIIILEIRTEFGHDDPPEFEKYLEGELGEFLIHQDDHVFGKTISELLPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNIKHLGEQQPVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHNYHRLFIAQCFSRGIADRLQIFSTDFIEEDFVDACVGLTYARVEGNT 318
Match: A0A6P4AW64 ((PI-PLC X-box domain-containing protein DDB_G0293730 {ECO:0000313|RefSeq:XP_015893466.1}))
HSP 1 Score: 560.066 bits (1442), Expect = 0.000e+0
Identity = 259/318 (81.45%), Postives = 285/318 (89.62%), Query Frame = 0
Query: 1 MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSLGPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVVDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGHEDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQEDFVDACAGLTYARVEGKA 318
MG Q++KQ DRRK+IS EKKTLC L S G DFPGSDYRP+DRK WM+ L PEK+ INKIVWPGTHDSATNKIG P ITRPFAQCQSLSIYQQLVRG RV+DIR+QEDR+VCHG+LLTY +DVV+ DVKKFLSET+SEIIILEIRTEFGHEDPP+F+KYLE LGE L+HQDDHVF KTIAE+LPKR+IC+WKPRKSPQ KAG P W SG+LKDNWIDTDLPSTKF+SN+KHL EQ AV+SRKFFYRVENTVTPQADNP+LCVKPVTNRIH Y RLFI+QCFS+G ADRLQI STDFI EDFVDAC GLTYARVEGKA
Sbjct: 1 MGSQISKQRDRRKSISTEKKTLCDLKGSCGQDFPGSDYRPSDRKNWMAGLNPEKVHINKIVWPGTHDSATNKIGFPCITRPFAQCQSLSIYQQLVRGARVLDIRIQEDRRVCHGILLTYSVDVVISDVKKFLSETQSEIIILEIRTEFGHEDPPDFDKYLEERLGEFLIHQDDHVFGKTIAELLPKRVICIWKPRKSPQPKAGGPLWGSGHLKDNWIDTDLPSTKFDSNLKHLSEQAAVSSRKFFYRVENTVTPQADNPVLCVKPVTNRIHGYARLFITQCFSKGCADRLQILSTDFIDEDFVDACVGLTYARVEGKA 318
Match: A0A5J5BTE3 (PLCXc domain-containing protein {ECO:0000259|SMART:SM00148})
HSP 1 Score: 559.296 bits (1440), Expect = 0.000e+0
Identity = 256/318 (80.50%), Postives = 285/318 (89.62%), Query Frame = 0
Query: 1 MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSLGPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVVDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGHEDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQEDFVDACAGLTYARVEGKA 318
MG QV+KQV RRKAIS EKKTLC L +S G +FPG+DYRP DRK WMS L PEK+ +NKIVWPGTHDSATNKIGIP I+RPFAQCQSLSIY QLVRGTRV+D+RVQEDR++CHG+LLTY IDVV++D+KKFLSET+SEIIILEIRTEFGH+DPP+F+KYLE +LGE L+HQDDHVF KTIAE+LPKRIICVWKPRKSPQ +AG P WS+GYLKDNWIDTDLPSTKFESNMKHL EQ VTSRKFFYRVENTVTPQADNP+LCVKPVT RIH Y RLFI++C SRG DRLQIFSTDFI EDFVDAC G T+AR+EGKA
Sbjct: 616 MGAQVSKQVGRRKAISTEKKTLCNLQQSCGHEFPGNDYRPPDRKNWMSGLNPEKIHLNKIVWPGTHDSATNKIGIPFISRPFAQCQSLSIYHQLVRGTRVLDVRVQEDRRICHGILLTYSIDVVIEDIKKFLSETQSEIIILEIRTEFGHQDPPDFDKYLEDQLGEYLIHQDDHVFGKTIAELLPKRIICVWKPRKSPQPQAGGPLWSAGYLKDNWIDTDLPSTKFESNMKHLSEQPPVTSRKFFYRVENTVTPQADNPVLCVKPVTGRIHGYARLFINECMSRGCGDRLQIFSTDFIDEDFVDACVGFTHARIEGKA 933
Match: A0A2P5EWV3 ((Phosphatidylinositol-4, 5-bisphosphate phosphodiesterase gamma {ECO:0000313|EMBL:PON90027.1}))
HSP 1 Score: 555.444 bits (1430), Expect = 0.000e+0
Identity = 254/318 (79.87%), Postives = 287/318 (90.25%), Query Frame = 0
Query: 1 MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSLGPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVVDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGHEDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQEDFVDACAGLTYARVEGKA 318
MG QV+KQV+RRKAIS EKK L L E SG DFPGSDYRP+DRK WMS L PEK+ +N+IVWPGTHDSATNKIGIP ++RPFAQCQSLSIYQQL RGTRV+DIRVQEDR+VCHG+L TY +DVV+KDVK+FL ET+SEII+LEIRTEFGH+DPPEFEKYLE +LGE L+HQD+HVF KT+AE+LPKR+ICVWKPRKSPQ KAGSPFW SG LKDNWIDTDLPSTKF+SN+KHLGEQ V+SRKFFYRVENTVTPQADNP+LCVKPVT RIH Y RLFI+QCF++G+ DRLQIFSTDFI EDFVDAC GLT+AR+EGKA
Sbjct: 1 MGSQVSKQVERRKAISTEKKVLVDLHEKSGEDFPGSDYRPSDRKNWMSELNPEKLHVNQIVWPGTHDSATNKIGIPLVSRPFAQCQSLSIYQQLARGTRVLDIRVQEDRRVCHGILATYSVDVVIKDVKRFLGETQSEIILLEIRTEFGHDDPPEFEKYLEEQLGEFLIHQDEHVFGKTVAELLPKRVICVWKPRKSPQPKAGSPFWHSGQLKDNWIDTDLPSTKFDSNLKHLGEQPPVSSRKFFYRVENTVTPQADNPVLCVKPVTGRIHGYARLFIAQCFAKGVGDRLQIFSTDFIDEDFVDACVGLTHARIEGKA 318
Match: A0A2R6R6W8 ((1-phosphatidylinositol phosphodiesterase {ECO:0000313|EMBL:PSS21741.1}))
HSP 1 Score: 554.288 bits (1427), Expect = 0.000e+0
Identity = 257/318 (80.82%), Postives = 283/318 (88.99%), Query Frame = 0
Query: 1 MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSLGPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVVDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGHEDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQEDFVDACAGLTYARVEGKA 318
MGGQV+ Q+++RKAIS EKKTLC L + G +FPG DYRP DRK WMS L PEK+ +NKIVWPGTHDSATNKIGIP ++RPFAQCQSLSIY QLVRGTRV+DIRVQEDR+VCHG+LLTYG+DVVL D+KKFLSET+SEIIILEIRTEFGHEDPPEF+KYLE +LGE L+HQDDHVF+KTIAE+LPKR+ICVWKPRKSPQ K G P WS GYLKDNWIDTDLPSTKFESN+KHLGEQ V SRKFFYRVENTVTPQADNP+LCV+PVT RIH Y RLFI+QCFSRG ADRLQI STDFI EDFVDAC GLT ARVEGK
Sbjct: 1 MGGQVSTQMEKRKAISTEKKTLCDLQQGCGKEFPGCDYRPPDRKNWMSVLNPEKVHLNKIVWPGTHDSATNKIGIPFVSRPFAQCQSLSIYHQLVRGTRVIDIRVQEDRRVCHGILLTYGVDVVLNDIKKFLSETQSEIIILEIRTEFGHEDPPEFDKYLEDQLGEFLIHQDDHVFEKTIAELLPKRVICVWKPRKSPQPKPGGPLWSGGYLKDNWIDTDLPSTKFESNLKHLGEQPPVVSRKFFYRVENTVTPQADNPVLCVRPVTGRIHGYVRLFITQCFSRGFADRLQILSTDFIDEDFVDACVGLTQARVEGKV 318
Match: A0A6J1AGD9 ((uncharacterized protein LOC110417799 {ECO:0000313|RefSeq:XP_021286008.1}))
HSP 1 Score: 554.288 bits (1427), Expect = 0.000e+0
Identity = 257/318 (80.82%), Postives = 287/318 (90.25%), Query Frame = 0
Query: 1 MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSLGPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVVDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGHEDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQEDFVDACAGLTYARVEGKA 318
MG QV+KQ +RRKAIS EKKTLC L +S G FPGSDYRPADRK WM+ LGPEK+ INKIVWPGTHDSATNKIGIP I+RPFAQCQSLSIYQQLV+GTRV+D+RV E+R+VCHG+L TY +DVV+ DVKKFLSET+SEIIILEIRTEFGH+DPP+F+KYLE +LGE L+HQDDHVF KTIAE+LPKRIICVWKP KSP+ KAGSPFWS+ YLKDNWIDTDLPSTKF+SNMKHLGEQQ V+SRKFFYRVENTVTPQADNP+LCVKPVT RIH Y RLFI+QCFS+G ADRLQIFSTDFI EDF+DAC G T+ARVEGK
Sbjct: 1 MGSQVSKQKERRKAISTEKKTLCDLHDSCGETFPGSDYRPADRKNWMAGLGPEKVHINKIVWPGTHDSATNKIGIPCISRPFAQCQSLSIYQQLVKGTRVLDVRVNENRRVCHGILSTYSVDVVINDVKKFLSETQSEIIILEIRTEFGHQDPPDFDKYLEEKLGEFLIHQDDHVFGKTIAELLPKRIICVWKPNKSPKPKAGSPFWSANYLKDNWIDTDLPSTKFDSNMKHLGEQQPVSSRKFFYRVENTVTPQADNPVLCVKPVTGRIHGYARLFITQCFSKGCADRLQIFSTDFIDEDFLDACVGFTHARVEGKC 318
Match: A0A7N0ZZZ2 (PLCXc domain-containing protein {ECO:0000259|SMART:SM00148})
HSP 1 Score: 553.903 bits (1426), Expect = 0.000e+0
Identity = 256/318 (80.50%), Postives = 285/318 (89.62%), Query Frame = 0
Query: 1 MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSLGPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVVDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGHEDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQEDFVDACAGLTYARVEGKA 318
MG QVTKQV++RK IS EKK LC L E+ G DFPGSDY P+DRK WM+ L PEK+ I++IVWPGTHDSATNKIG+PGITRPFAQCQSLSIY QLVRGTRV+DIRVQE+RKVCHGVL+TYGIDVVL DVKKFL ET+SEIIILEIRTEFGHEDPPEFEKYLE +LGELL+HQDD VF KTIAE+LPKR+ICVWKPRK+PQ + G P W SGYLKDNWIDTDLPSTKFESN+KHL EQQ V+SRKFFYRVENTVTP+ DNP+LCV+PVT RIH Y RLFI+QCF+RG AD+LQ+FSTDFI EDFVDAC GLTYAR+EGKA
Sbjct: 1 MGAQVTKQVEKRKTISTEKKALCDLYENCGQDFPGSDYHPSDRKNWMAGLDPEKVHISQIVWPGTHDSATNKIGVPGITRPFAQCQSLSIYDQLVRGTRVLDIRVQENRKVCHGVLVTYGIDVVLNDVKKFLGETQSEIIILEIRTEFGHEDPPEFEKYLEDQLGELLIHQDDQVFGKTIAEVLPKRVICVWKPRKAPQPRHGGPLWGSGYLKDNWIDTDLPSTKFESNLKHLSEQQPVSSRKFFYRVENTVTPKPDNPVLCVRPVTGRIHGYARLFITQCFARGSADKLQVFSTDFIDEDFVDACIGLTYARIEGKA 318
Match: A0A2R6RHJ6 ((1-phosphatidylinositol phosphodiesterase {ECO:0000313|EMBL:PSS29506.1}))
HSP 1 Score: 553.518 bits (1425), Expect = 0.000e+0
Identity = 256/318 (80.50%), Postives = 283/318 (88.99%), Query Frame = 0
Query: 1 MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSLGPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVVDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGHEDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQEDFVDACAGLTYARVEGKA 318
MGGQV+ Q+++RKAIS EKKTLC L + G +FPG DYRP DRK WMS L PEK+ +NKIVWPGTHDSATNKIGIP ++RPFAQCQSLSIY QLVRGTRV+DIRVQEDR+VCHG+LLTYG+DVVL D+KKF SET+SEIIILEIRTEFGHEDPPEF+KYLE +LGE L+HQDDHVF+KTIAE+LPKR+ICVWKPRKSPQ K G P WS GYLKDNWIDTDLPSTKFESN+K+LGEQQ V SRKFFYRVENTVTPQADNP+LCV+PVT RIH Y RLFI+QCFSRG ADRLQI STDFI EDFVDAC GLT ARVEGK
Sbjct: 1 MGGQVSTQMEKRKAISTEKKTLCDLQQGCGKEFPGCDYRPPDRKNWMSGLNPEKVHLNKIVWPGTHDSATNKIGIPFVSRPFAQCQSLSIYHQLVRGTRVIDIRVQEDRRVCHGILLTYGVDVVLNDIKKFFSETQSEIIILEIRTEFGHEDPPEFDKYLEEQLGEFLIHQDDHVFEKTIAELLPKRVICVWKPRKSPQPKPGGPLWSGGYLKDNWIDTDLPSTKFESNLKYLGEQQPVVSRKFFYRVENTVTPQADNPVLCVRPVTGRIHGYARLFITQCFSRGCADRLQILSTDFIDEDFVDACVGLTQARVEGKV 318
Match: A0A7J0F7N4 ((PLC-like phosphodiesterases superfamily protein {ECO:0000313|EMBL:GFY94593.1}))
HSP 1 Score: 553.518 bits (1425), Expect = 0.000e+0
Identity = 256/318 (80.50%), Postives = 282/318 (88.68%), Query Frame = 0
Query: 1 MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSLGPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVVDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGHEDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQEDFVDACAGLTYARVEGKA 318
MGGQV+ Q+++RKAIS EKK LC L + G +FPG DYRP DRK WMS L PEK+ +NKIVWPGTHDSATNKIGIP ++RPFAQCQSLSIY QLVRGTRV+DIRVQEDR+VCHG+LLTYG+DVVL D+KKFLSET+SEIIILEIRTEFGHEDPPEF+KYLE +LGE L+HQDDHVF+KTIAE+LPKR+ICVWKPRKSPQ K G P WS GYLKDNWIDTDLPSTKFESN+KHLGEQ V SRKFFYRVENTVTPQADNP+LCV+PVT RIH Y RLFI+QCFSRG ADRLQI STDFI EDFVDAC GLT ARVEGK
Sbjct: 1 MGGQVSTQMEKRKAISTEKKNLCDLQQGCGKEFPGCDYRPPDRKNWMSGLNPEKVHLNKIVWPGTHDSATNKIGIPFVSRPFAQCQSLSIYHQLVRGTRVIDIRVQEDRRVCHGILLTYGVDVVLNDIKKFLSETQSEIIILEIRTEFGHEDPPEFDKYLEDQLGEFLIHQDDHVFEKTIAELLPKRVICVWKPRKSPQPKPGGPLWSGGYLKDNWIDTDLPSTKFESNLKHLGEQPPVVSRKFFYRVENTVTPQADNPVLCVRPVTGRIHGYARLFITQCFSRGFADRLQILSTDFIDEDFVDACVGLTQARVEGKV 318
Match: A0A2P5C1X0 ((Phosphatidylinositol-4, 5-bisphosphate phosphodiesterase gamma {ECO:0000313|EMBL:PON55073.1}))
HSP 1 Score: 553.518 bits (1425), Expect = 0.000e+0
Identity = 252/318 (79.25%), Postives = 286/318 (89.94%), Query Frame = 0
Query: 1 MGGQVTKQVDRRKAISVEKKTLCTLCESSGTDFPGSDYRPADRKTWMSSLGPEKMQINKIVWPGTHDSATNKIGIPGITRPFAQCQSLSIYQQLVRGTRVVDIRVQEDRKVCHGVLLTYGIDVVLKDVKKFLSETESEIIILEIRTEFGHEDPPEFEKYLEGELGELLVHQDDHVFQKTIAEILPKRIICVWKPRKSPQAKAGSPFWSSGYLKDNWIDTDLPSTKFESNMKHLGEQQAVTSRKFFYRVENTVTPQADNPILCVKPVTNRIHDYHRLFISQCFSRGIADRLQIFSTDFIQEDFVDACAGLTYARVEGKA 318
MG QV+KQV+RRKAIS EKK L L E +G DFPGSDYRP+DRK WM+ L PEK+ +N+IVWPGTHDSATNKIGIP ++RPFAQCQSLSIYQQL RGTRV+DIRVQEDR+VCHG+L TY +DVV+KDVK+FL ET+SEII+LEIRTEFGH+DPPEFEKYLE ELGE L+HQD+HVF KT+AE+LPKR+ICVWKPRKSPQ KAGSPFW SG LKDNWIDTDLPSTKF+SN+KHLGEQ V+SRKFFYRVENTVTPQADNP+LCVKPVT RIH Y RLFISQCF++ + DRLQIFSTDFI EDFVDAC GLT+AR+EG+A
Sbjct: 1 MGSQVSKQVERRKAISTEKKVLVDLHEKTGEDFPGSDYRPSDRKNWMNELNPEKLHVNQIVWPGTHDSATNKIGIPLVSRPFAQCQSLSIYQQLARGTRVLDIRVQEDRRVCHGILATYSVDVVIKDVKRFLGETKSEIILLEIRTEFGHDDPPEFEKYLEEELGEFLIHQDEHVFNKTVAELLPKRVICVWKPRKSPQPKAGSPFWHSGQLKDNWIDTDLPSTKFDSNLKHLGEQPPVSSRKFFYRVENTVTPQADNPVLCVKPVTGRIHGYARLFISQCFAKSVGDRLQIFSTDFIDEDFVDACVGLTHARIEGRA 318
| Match Name | Stats | Description |
|---|---|---|
| A0A6L5B8U1 | E-Value: 0.000e+0, PID: 91.51 | PLCXc domain-containing protein {ECO:0000259|SMART... [more] |
| A0A6P4AW64 | E-Value: 0.000e+0, PID: 81.45 | (PI-PLC X-box domain-containing protein DDB_G02937... [more] |
| A0A5J5BTE3 | E-Value: 0.000e+0, PID: 80.50 | PLCXc domain-containing protein {ECO:0000259|SMART... [more] |
| A0A2P5EWV3 | E-Value: 0.000e+0, PID: 79.87 | (Phosphatidylinositol-4, 5-bisphosphate phosphodie... [more] |
| A0A2R6R6W8 | E-Value: 0.000e+0, PID: 80.82 | (1-phosphatidylinositol phosphodiesterase {ECO:000... [more] |
| A0A6J1AGD9 | E-Value: 0.000e+0, PID: 80.82 | (uncharacterized protein LOC110417799 {ECO:0000313... [more] |
| A0A7N0ZZZ2 | E-Value: 0.000e+0, PID: 80.50 | PLCXc domain-containing protein {ECO:0000259|SMART... [more] |
| A0A2R6RHJ6 | E-Value: 0.000e+0, PID: 80.50 | (1-phosphatidylinositol phosphodiesterase {ECO:000... [more] |
| A0A7J0F7N4 | E-Value: 0.000e+0, PID: 80.50 | (PLC-like phosphodiesterases superfamily protein {... [more] |
| A0A2P5C1X0 | E-Value: 0.000e+0, PID: 79.25 | (Phosphatidylinositol-4, 5-bisphosphate phosphodie... [more] |
Pages
back to top| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |