MAVYYKFKSAKDYDSVSLDGHFITVANLKDKIFENKHLGTGTDFDLVISN
AQTNEVWWPLCDRFNEIYFLGLLPETSRPEVEFKAGNLQGANSTFFGANP
SVTNYPEDSEWDEFGSDLYAIPEVLHVQSSNQVQKAPPPSKSDEDSKIQA
LIDNPALDWQHQIVEGSGNARGYGRGMGGRMGGRGFDMKSARPKAKIPSH
ALSAASKGEQILPQIKDTTGSQDTTELVKIVAAPQPPVKNSNIAGSSRVP
DVFEATNKSRSGKEPAIQASGPLAAEELQEKLVSEPGRLTKEKEKEENSY
AFRNFPRYGMEFNGRPVMSKEEFEAQKVNLMHEREIERLGDSSNKFKEEA
SNSGAKTLSNPVEESSNDGDVASDGQSEGDSWVQMAT*
| Relationships |
|---|
| The polypeptide, DCAR_027767, derives from mRNA, DCAR_027767. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5B6ZIS9 (DWNN domain-containing protein {ECO:0000259|PROSITE:PS51282})
HSP 1 Score: 220.32 bits (560), Expect = 1.375e-65
Identity = 124/261 (47.51%), Postives = 147/261 (56.32%), Query Frame = 0
Query: 1 MAVYYKFKSAKDYDSVSLDGHFITVANLKDKIFENKHLGTGTDFDLVISNAQTNEVWWP-----------LCDRFNEIYFLGLLPETSRPEVEFKAGNLQGANSTFFGANPSVTNYPEDSEWDEFGSDLYAIPEVLHVQSSNQVQKAPPPSKSDEDSKIQALIDNPALDWQHQ-------------------------------------IVEGSGNARGYGRGMGGRMGGRGFDMKSARPKAKIPSHALSAASKGEQILP 213
MAVYYKFKSAKDYDS+ +DGHFI+V+NLK+KIFE KHLG GTDFDLV++NAQTNE + L R + ++ E P+VE K+ + Q A S+F GA+ SVT YPEDSEWDEFG+DLYAIPEVL VQSSN +Q APPPSK+DEDSKI+ALID PALDWQ Q + G+ G FD+K RP IP L A G LP
Sbjct: 1 MAVYYKFKSAKDYDSIPIDGHFISVSNLKEKIFECKHLGRGTDFDLVVTNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRMPIVTEQDEPKVENKSEDAQPAKSSFLGADSSVTRYPEDSEWDEFGNDLYAIPEVLPVQSSNPIQDAPPPSKADEDSKIKALIDTPALDWQRQASDGFGPGRGFGRGMGGRMMGGRGFGRGLERKTPPPGYICHRCKVPGHFIQHCPTNGDPTFDVKKVRPPTGIPKSMLMATPDGSYALP 261
Match: A0A5B6ZK68 ((Putative DWNN domain isoform 1 {ECO:0000313|EMBL:MPA44058.1}) (2.3.2.27 {ECO:0000313|EMBL:MPA44058.1}))
HSP 1 Score: 224.557 bits (571), Expect = 2.397e-63
Identity = 113/180 (62.78%), Postives = 134/180 (74.44%), Query Frame = 0
Query: 1 MAVYYKFKSAKDYDSVSLDGHFITVANLKDKIFENKHLGTGTDFDLVISNAQTNEVWW--PLCDRFNEIYFLGLLPETSR------------PEVEFKAGNLQGANSTFFGANPSVTNYPEDSEWDEFGSDLYAIPEVLHVQSSNQVQKAPPPSKSDEDSKIQALIDNPALDWQHQIVEG 166
MAVYYKFKSAKDYDS+S+DGHFI+VANLK+KIFE+KHLG GTDFDLV++NAQTNE + + N + +P R P+VE K+ + Q A S+F GA+ SVT YPEDSEWDEFG+DLYAIPEVL VQSSN +Q APPPSK+DEDSKI+ALID PALDWQ Q +G
Sbjct: 1 MAVYYKFKSAKDYDSISIDGHFISVANLKEKIFESKHLGRGTDFDLVVTNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRMPIVTEQVTEDEPKVENKSEDAQPAKSSFLGADSSVTRYPEDSEWDEFGNDLYAIPEVLPVQSSNPIQDAPPPSKADEDSKIKALIDTPALDWQRQASDG 180
HSP 2 Score: 65.0846 bits (157), Expect = 1.031e-8
Identity = 48/99 (48.48%), Postives = 61/99 (61.62%), Query Frame = 0
Query: 187 DMKSAR-PKAKIPSHALSAASKGEQILPQIKDTTGSQDTTELVKIVAAPQPPVKNSNIAGSSRVPDVFEATNKSRSGKEPAIQASGPLAAEELQEKLVS 284
DM+SAR P+ KIPS S ASKGEQ+ P T + +T E K+V PP + +++V DV EAT +S KEPA Q S PLA EE+Q+KLVS
Sbjct: 380 DMESARCPQPKIPSPTQSVASKGEQLPPPQNKETPNIETAEQGKVV---NPPHQTLEKMLTAKVVDVSEATLESV--KEPASQGSAPLADEEVQQKLVS 473
Match: A0A5J4ZVZ0 (DWNN domain-containing protein {ECO:0000259|PROSITE:PS51282})
HSP 1 Score: 223.402 bits (568), Expect = 3.963e-63
Identity = 110/177 (62.15%), Postives = 131/177 (74.01%), Query Frame = 0
Query: 1 MAVYYKFKSAKDYDSVSLDGHFITVANLKDKIFENKHLGTGTDFDLVISNAQTNEVWWP-----------LCDRFNEIYFLGLLPETSRPEVEFKAGNLQGANSTFFGANPSVTNYPEDSEWDEFGSDLYAIPEVLHVQSSNQVQKAPPPSKSDEDSKIQALIDNPALDWQHQIVEG 166
MAVYYKFKSAKDYDS+ +DGHFITV+NLK+KIFE KHLG GTDFDLV++NAQTNE + L R + ++ E P+VE K+ + Q S+F GA+ SVT YPED EWDEFG+DLYAIPEVL VQS+N +Q APPPSK+DEDSKI+ALID PALDWQHQ +G
Sbjct: 1 MAVYYKFKSAKDYDSIPIDGHFITVSNLKEKIFETKHLGRGTDFDLVVTNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRMPIVTEQDEPKVENKSEDAQPEKSSFLGADASVTRYPEDLEWDEFGNDLYAIPEVLPVQSNNPIQDAPPPSKADEDSKIKALIDTPALDWQHQASDG 177
HSP 2 Score: 63.5438 bits (153), Expect = 3.632e-8
Identity = 50/109 (45.87%), Postives = 65/109 (59.63%), Query Frame = 0
Query: 180 RMGGRGF---DMKSAR-PKAKIPSHALSAASKGEQILPQIKDTTGSQDTTELVKIVAAPQPPVKNSNIAGSSRVPDVFEATNKSRSGKEPAIQASGPLAAEELQEKLVS 284
+M G F DM+SAR P+ KI S LSAASKGEQ+ P T + +T E K+V P++ +++V DV EAT +S KEPA Q S PLA EE+Q+K VS
Sbjct: 338 KMPGSAFQVPDMESARCPQPKIASPTLSAASKGEQLPPTQNTDTPNIETAEQGKVVNH---PLQTLEKRWTAKVADVSEATLESV--KEPASQGSAPLADEEVQQKPVS 441
HSP 3 Score: 38.891 bits (89), Expect = 1.777e+0
Identity = 22/59 (37.29%), Postives = 34/59 (57.63%), Query Frame = 0
Query: 303 RNFPRYGMEFNGRP--VMSKEEFEAQKVNLMHEREIERLGDS-----SNKFKEEASNSG 354
R+ +GM N P +MS+E+FEA+K ++ +RE ER G+S +F E S+S
Sbjct: 544 RDLAGFGMGMNAGPNAIMSREQFEARKADIWRKREFERRGESREFSKDREFGREVSSSA 602
Match: A0A5B6ZHZ1 ((Putative E3 ubiquitin-protein ligase RBBP6 {ECO:0000313|EMBL:MPA44057.1}) (2.3.2.27 {ECO:0000313|EMBL:MPA44057.1}))
HSP 1 Score: 219.164 bits (557), Expect = 1.872e-61
Identity = 110/176 (62.50%), Postives = 130/176 (73.86%), Query Frame = 0
Query: 1 MAVYYKFKSAKDYDSVSLDGHFITVANLKDKIFENKHLGTGTDFDLVISNAQTNEVWW--PLCDRFNEIYFLGLLPETSR------------PEVEFKAGNLQGANSTFFGANPSVTNYPEDSEWDEFGSDLYAIPEVLHVQSSNQVQKAPPPSKSDEDSKIQALIDNPALDWQHQ 162
MAVYYKFKSAKDYDS+ +DGHFI+V+NLK+KIFE KHLG GTDFDLV++NAQTNE + + N + +P R P+VE K+ + Q A S+F GA+ SVT YPEDSEWDEFG+DLYAIPEVL VQSSN +Q APPPSK+DEDSKI+ALID PALDWQ Q
Sbjct: 1 MAVYYKFKSAKDYDSIPIDGHFISVSNLKEKIFECKHLGRGTDFDLVVTNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRMPIVTEQVTEDEPKVENKSEDAQPAKSSFLGADSSVTRYPEDSEWDEFGNDLYAIPEVLPVQSSNPIQDAPPPSKADEDSKIKALIDTPALDWQRQ 176
HSP 2 Score: 65.4698 bits (158), Expect = 9.050e-9
Identity = 48/99 (48.48%), Postives = 61/99 (61.62%), Query Frame = 0
Query: 187 DMKSAR-PKAKIPSHALSAASKGEQILPQIKDTTGSQDTTELVKIVAAPQPPVKNSNIAGSSRVPDVFEATNKSRSGKEPAIQASGPLAAEELQEKLVS 284
DM+SAR P+ KIPS S ASKGEQ+ P T + +T E K+V PP + +++V DV EAT +S KEPA Q S PLA EE+Q+KLVS
Sbjct: 380 DMESARCPQPKIPSPTQSVASKGEQLPPPQNKETPNIETAEQGKVV---NPPHQTLEKMLTAKVVDVSEATLESV--KEPASQGSAPLADEEVQQKLVS 473
Match: A5C9S4 (DWNN domain-containing protein {ECO:0000259|PROSITE:PS51282})
HSP 1 Score: 211.46 bits (537), Expect = 9.150e-59
Identity = 104/173 (60.12%), Postives = 123/173 (71.10%), Query Frame = 0
Query: 1 MAVYYKFKSAKDYDSVSLDGHFITVANLKDKIFENKHLGTGTDFDLVISNAQTNEVWWP-----------LCDRFNEIYFLGLLPETSRPEVEFKAGNLQGANSTFFGANPSVTNYPEDSEWDEFGSDLYAIPEVLHVQSSNQVQKAPPPSKSDEDSKIQALIDNPALDWQHQ 162
MAVYYKFKSAKD+DS+ +DGHFI++ NLK+KIFE KHLG GTDFDLV++NAQTNE + L R + ++ E P+VE K Q NS F GA+ S YP+DSEWDEFG+DLYAIPEV+ VQSSN V APPPSK+DEDSKI+ALID PALDWQ Q
Sbjct: 1 MAVYYKFKSAKDFDSIPIDGHFISIGNLKEKIFETKHLGRGTDFDLVVTNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRMPIVTEKDEPKVENKVDEAQPTNSNFVGADSSAMKYPDDSEWDEFGNDLYAIPEVVPVQSSNPVLDAPPPSKADEDSKIKALIDTPALDWQRQ 173
HSP 2 Score: 63.929 bits (154), Expect = 2.601e-8
Identity = 49/104 (47.12%), Postives = 63/104 (60.58%), Query Frame = 0
Query: 187 DMKSAR-PKAKIPSHALSAASKGEQILP-QIKDTTGSQDTTELVKIVA----APQPPVKNSNIAGSSRVPDVFEATNKSRSGKEPAIQASGPLAAEELQEKLVS 284
DM+SAR P+ KIPS LSAASKGEQ+ P QI ++T ++K VA + PP + + + DV EAT +S S KE A Q S PLA EE+Q+KL S
Sbjct: 378 DMESARCPQPKIPSPTLSAASKGEQMPPPQI------EETPNIIKPVADESKSANPPPQLPEKGRTGKAADVSEATLESMSVKELASQGSAPLAEEEVQQKLAS 475
Match: D7SYZ6 (DWNN domain-containing protein {ECO:0000259|PROSITE:PS51282})
HSP 1 Score: 211.46 bits (537), Expect = 9.431e-59
Identity = 104/173 (60.12%), Postives = 123/173 (71.10%), Query Frame = 0
Query: 1 MAVYYKFKSAKDYDSVSLDGHFITVANLKDKIFENKHLGTGTDFDLVISNAQTNEVWWP-----------LCDRFNEIYFLGLLPETSRPEVEFKAGNLQGANSTFFGANPSVTNYPEDSEWDEFGSDLYAIPEVLHVQSSNQVQKAPPPSKSDEDSKIQALIDNPALDWQHQ 162
MAVYYKFKSAKD+DS+ +DGHFI++ NLK+KIFE KHLG GTDFDLV++NAQTNE + L R + ++ E P+VE K Q NS F GA+ S YP+DSEWDEFG+DLYAIPEV+ VQSSN V APPPSK+DEDSKI+ALID PALDWQ Q
Sbjct: 1 MAVYYKFKSAKDFDSIPIDGHFISIGNLKEKIFETKHLGRGTDFDLVVTNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRMPIVTEKDEPKVENKVDEAQPTNSNFVGADSSAMKYPDDSEWDEFGNDLYAIPEVVPVQSSNPVLDAPPPSKADEDSKIKALIDTPALDWQRQ 173
HSP 2 Score: 63.929 bits (154), Expect = 2.743e-8
Identity = 49/104 (47.12%), Postives = 63/104 (60.58%), Query Frame = 0
Query: 187 DMKSAR-PKAKIPSHALSAASKGEQILP-QIKDTTGSQDTTELVKIVA----APQPPVKNSNIAGSSRVPDVFEATNKSRSGKEPAIQASGPLAAEELQEKLVS 284
DM+SAR P+ KIPS LSAASKGEQ+ P QI ++T ++K VA + PP + + + DV EAT +S S KE A Q S PLA EE+Q+KL S
Sbjct: 378 DMESARCPQPKIPSPTLSAASKGEQMPPPQI------EETPNIIKPVADESKSANPPPQLPEKGRTGKAADVSEATLESMSVKELASQGSAPLAEEEVQQKLAS 475
Match: A0A2P5FIU0 ((Zinc finger protein {ECO:0000313|EMBL:PON97702.1}))
HSP 1 Score: 209.92 bits (533), Expect = 5.757e-58
Identity = 119/261 (45.59%), Postives = 147/261 (56.32%), Query Frame = 0
Query: 1 MAVYYKFKSAKDYDSVSLDGHFITVANLKDKIFENKHLGTGTDFDLVISNAQTNEVWW--PLCDRFNEIYFLGLLPETSR--------PEVEFKAGNLQGANSTFFGANPSVTNYPEDSEWDEFGSDLYAIPEVLHVQSSNQVQKAPPPSKSDEDSKIQALIDNPALDWQHQIVEGSGNARGYGRGMGGR-MGGRG-------------------------------------FDMKSARPKAKIPSHALSAASKGEQILP 213
MAVYYKFKSAKDYDS+++DG FI+V LK+KIFE KHLG GTDFDLV++NAQTNE + + N + +P R P+VE K + ++F A+ SV YP+DSEWD+ G DLY IPEV+ VQ SN + +APP +K+DEDSKI+ALID PALDWQ Q +G G R +GRGMGGR M GRG FD+K +P IP L A G LP
Sbjct: 1 MAVYYKFKSAKDYDSIAMDGPFISVGTLKEKIFETKHLGRGTDFDLVVTNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRMPIVTDPIPKVEDKVEEPEPERTSFPVADSSVMKYPDDSEWDDLGGDLYEIPEVVPVQPSNVLPEAPPANKADEDSKIKALIDTPALDWQRQGPDGFGPGRSFGRGMGGRTMNGRGYGRVGLERKTPPHGYICHRCRVPGHFIQHCPTNGDPNFDIKKVKPPTGIPKSMLMATPDGSYALP 261
HSP 2 Score: 65.855 bits (159), Expect = 5.271e-9
Identity = 56/137 (40.88%), Postives = 78/137 (56.93%), Query Frame = 0
Query: 151 LIDNPAL-DWQHQIVEGSGNARGYGRGMGGRMGGRGFDMKSAR-PKAKIPSHALSAASKGEQILPQIKDTTGS-QDTTELVKIVAAPQPPVKNSNIAGSSRVPDVFEATNKSRSGKEPAIQASGPLAAEELQEKLVS 284
L+ N L D ++I+E GN+ G ++ DM+SAR P+ KIPS +SAASKG+Q +K+ + T E K V A Q V+ ++R+ DV EAT++S S KEPA Q S PL EE+Q+KL S
Sbjct: 346 LLPNKTLRDTINRILESGGNSSADNAGSTFQVQ----DMESARCPQPKIPSPTMSAASKGDQKPSPVKEEAPRVEHTPEEAKPVIATQQAVEK---VKNARIVDVSEATHESVSVKEPASQCSAPLVEEEVQQKLTS 475
HSP 3 Score: 45.4394 bits (106), Expect = 1.569e-2
Identity = 30/84 (35.71%), Postives = 43/84 (51.19%), Query Frame = 0
Query: 309 GMEFNGRPVMSKEEFEAQKVNLMHEREIERLGDSSN-----KFKEEASNSG------AKTLSNPVEESSNDGDVASDGQSEGDS 381
GM P+MS+EEFEA+K +L +RE+ER G+S + F E S+ G K + PV+ S+ D +SE S
Sbjct: 580 GMNLAPHPIMSREEFEARKADLRRKREMERRGESRDFSKDKDFGREVSSGGDGPMMKPKPVQRPVDNRSSPPDYNHRHRSERSS 663
Match: A0A2P5B2Z1 ((Zinc finger protein {ECO:0000313|EMBL:PON43170.1}))
HSP 1 Score: 208.764 bits (530), Expect = 1.412e-57
Identity = 108/197 (54.82%), Postives = 134/197 (68.02%), Query Frame = 0
Query: 1 MAVYYKFKSAKDYDSVSLDGHFITVANLKDKIFENKHLGTGTDFDLVISNAQTNEVWW--PLCDRFNEIYFLGLLPETSR--------PEVEFKAGNLQGANSTFFGANPSVTNYPEDSEWDEFGSDLYAIPEVLHVQSSNQVQKAPPPSKSDEDSKIQALIDNPALDWQHQIVEGSGNARGYGRGMGGR-MGGRGF 186
MAVYYKFKSAKDYDS+++DG FI+V LK+KIFE KHLG GTDFDLV++NAQTNE + + N + +P R P+VE K + ++F A+ SV YP+DSEWD+ G DLY IPEV+ VQ SN + +APP +K DEDSKI+ALID PALDWQ Q +G G R +GRGMGGR M GRG+
Sbjct: 1 MAVYYKFKSAKDYDSIAMDGPFISVGTLKEKIFETKHLGRGTDFDLVVTNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRMPIVTDPIPKVEDKVEEPEPERTSFPVADASVMKYPDDSEWDDLGGDLYEIPEVVPVQPSNVLPEAPPTNKVDEDSKIKALIDTPALDWQRQGPDGFGPGRSFGRGMGGRTMNGRGY 197
HSP 2 Score: 63.929 bits (154), Expect = 2.189e-8
Identity = 55/137 (40.15%), Postives = 77/137 (56.20%), Query Frame = 0
Query: 151 LIDNPAL-DWQHQIVEGSGNARGYGRGMGGRMGGRGFDMKSAR-PKAKIPSHALSAASKGEQILPQIKDTTGS-QDTTELVKIVAAPQPPVKNSNIAGSSRVPDVFEATNKSRSGKEPAIQASGPLAAEELQEKLVS 284
L+ N L D ++I+E GN+ G ++ DM+SAR P+ KIPS +SAASKG+Q +K+ + E K V A Q V+ ++R+ DV EAT++S S KEPA Q S PL EE+Q+KL S
Sbjct: 346 LLPNKTLRDTINRILESGGNSSADNAGSTFQVQ----DMESARCPQPKIPSPTMSAASKGDQKPSPVKEEAPRVEHPPEEAKPVVATQQAVEK---VKNARIVDVSEATHESVSVKEPASQCSAPLVEEEVQQKLTS 475
HSP 3 Score: 44.669 bits (104), Expect = 3.060e-2
Identity = 23/58 (39.66%), Postives = 33/58 (56.90%), Query Frame = 0
Query: 309 GMEFNGRPVMSKEEFEAQKVNLMHEREIERLGDSSN-----KFKEEASNSGAKTLSNP 361
GM P+MS+EEFEA+K +L +RE+ER G+S + F E S+ G + P
Sbjct: 580 GMNLGPHPIMSREEFEARKADLRRKREMERRGESRDFSKDKDFGREVSSGGDGPMMKP 637
Match: A0A7J6V3Z5 ((Dwnn domain a cchc-type zinc finger {ECO:0000313|EMBL:KAF5179507.1}))
HSP 1 Score: 197.978 bits (502), Expect = 1.587e-57
Identity = 105/176 (59.66%), Postives = 124/176 (70.45%), Query Frame = 0
Query: 1 MAVYYKFKSAKDYDSVSLDGHFITVANLKDKIFENKHLGTGTDFDLVISNAQTNEVWWPLCDRF---NEIYFLGLLPETSRPEV-----EFKAGN-----LQGANSTFFGANPSVTNYPEDSEWDEFGSDLYAIPEVLHVQSSNQVQKAPPPSKSDEDSKIQALIDNPALDWQHQI 163
MAVYYKFKSAKD+DSV +DGHFI+VANLK+KIFE KHLG GTDFDL++SNAQTNE +P D N + +P R + E KA + Q A STFF + S +PE++EWDEFG+DLYAIPEV VQ SNQ Q APPP++ DEDSKI+ALID PALDWQ QI
Sbjct: 1 MAVYYKFKSAKDFDSVPIDGHFISVANLKEKIFETKHLGRGTDFDLMVSNAQTNE-EYPDPDTLIPKNTSVLVRRIPGRPRMPIVTEREETKATDNKEEESQPAKSTFFAPDASSMTFPEETEWDEFGNDLYAIPEVPLVQHSNQAQDAPPPNRDDEDSKIKALIDTPALDWQQQI 175
Match: A0A4S4CZZ8 (DWNN domain-containing protein {ECO:0000259|PROSITE:PS51282})
HSP 1 Score: 209.149 bits (531), Expect = 1.805e-57
Identity = 110/194 (56.70%), Postives = 135/194 (69.59%), Query Frame = 0
Query: 1 MAVYYKFKSAKDYDSVSLDGHFITVANLKDKIFENKHLGTGTDFDLVISNAQTNEVWW-----------------PLCDRFN----------EIYFLGL----LPETSRPEVEF-KAGNLQGANSTFFGANPSVTNYPEDSEWDEFGSDLYAIPEVLHVQSSNQVQKAPPPSKSDEDSKIQALIDNPALDWQHQ 162
MAVYYKFKSAKDYDS+ +DGHFI+VANLK+KIFE+KHLG GTDFDLV++NAQTNE + P R N E+ +L + + +RP++E K+ + Q N++F GA+ SVT YPEDSEWDEFG+DLYAIPEVL VQ+SN +Q APP SK+DEDSKI+ALID PALDWQ Q
Sbjct: 1 MAVYYKFKSAKDYDSIPIDGHFISVANLKEKIFESKHLGRGTDFDLVVTNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRMNIVTEPVIEQDELNWLNISYVSVASFARPKLEINKSDDAQPLNNSFLGADSSVTKYPEDSEWDEFGNDLYAIPEVLPVQASNPIQDAPPSSKADEDSKIKALIDTPALDWQRQ 194
HSP 2 Score: 56.9954 bits (136), Expect = 4.436e-6
Identity = 48/127 (37.80%), Postives = 65/127 (51.18%), Query Frame = 0
Query: 182 GGRGF---DMKSARPKAK----IPSHALSAASKGEQILP-----------------QIKDTTGSQDTTELVKIVAAPQPPVKNSNIAGSSRVPDVFEATNKSRSGKEPAIQASGPLAAEELQEKLVS 284
GG F DM+S P+ K +PS SAASKGEQ+ P Q ++ + +D + I++APQ K + +VP+ EAT+ S S KEPA Q S LA EE+Q+KLVS
Sbjct: 393 GGSAFQAQDMESKIPQPKMEPKVPSPTQSAASKGEQLPPPQYTHSAVSKGEQLPPPQNEEISKVRDAADQGTILSAPQ---KTLEKGRTGKVPNASEATHDSMSMKEPASQGSALLADEEVQQKLVS 516
HSP 3 Score: 47.7506 bits (112), Expect = 2.937e-3
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 0
Query: 303 RNFPRYGMEFN-GRPVMSKEEFEAQKVNLMHEREIERLGDS-----SNKFKEEASNSG 354
R+ +GM FN G P+MS+EEFEA+K +L + E+ER G+S +F E S+SG
Sbjct: 651 RDLADFGMGFNPGPPIMSREEFEARKADLRRKHEMERRGESRELSKDREFSREVSSSG 708
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6ZIS9 | E-Value: 1.375e-65, PID: 47.51 | DWNN domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A5B6ZK68 | E-Value: 2.397e-63, PID: 62.78 | (Putative DWNN domain isoform 1 {ECO:0000313|EMBL:... [more] |
| A0A5J4ZVZ0 | E-Value: 3.963e-63, PID: 62.15 | DWNN domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A5B6ZHZ1 | E-Value: 1.872e-61, PID: 62.50 | (Putative E3 ubiquitin-protein ligase RBBP6 {ECO:0... [more] |
| A5C9S4 | E-Value: 9.150e-59, PID: 60.12 | DWNN domain-containing protein {ECO:0000259|PROSIT... [more] |
| D7SYZ6 | E-Value: 9.431e-59, PID: 60.12 | DWNN domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A2P5FIU0 | E-Value: 5.757e-58, PID: 45.59 | (Zinc finger protein {ECO:0000313|EMBL:PON97702.1}... [more] |
| A0A2P5B2Z1 | E-Value: 1.412e-57, PID: 54.82 | (Zinc finger protein {ECO:0000313|EMBL:PON43170.1}... [more] |
| A0A7J6V3Z5 | E-Value: 1.587e-57, PID: 59.66 | (Dwnn domain a cchc-type zinc finger {ECO:0000313|... [more] |
| A0A4S4CZZ8 | E-Value: 1.805e-57, PID: 56.70 | DWNN domain-containing protein {ECO:0000259|PROSIT... [more] |
Pages
back to top| Name | Description |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |