MAQDNSNSLIPKLVIVLVAAACMALVIALYHCIRVGWTTRYHHNETPQQH
HLGQEEQQSFENSIAELIPIHKFKKSCLDLEGRNDHTCSICLSEFEEGEE
LRTLPECSHSFHVSCIDMWFHSHTSCPMCRIDATPSWHGLMHYLESDSER
PATRQVASMAFFVTIYHCIMVSCQNRIERHNSDQVSQSTVIRIQNFLLWR
NGQELNSAQDRGATVLGLENSKIELIPRHKFEKGKGILDAECAVCLSEFA
EDEEIRTLPECLHSFHVECIDMWLHSHPNCPTCRANASPPSSSLLLHPCP
K*
| Relationships |
|---|
| The polypeptide, DCAR_027638, derives from mRNA, DCAR_027638. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A068TUU8 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 234.572 bits (597), Expect = 1.076e-73
Identity = 138/315 (43.81%), Postives = 186/315 (59.05%), Query Frame = 0
Query: 1 MAQDNSNSLIPKLVIVLVAAACMALVIALYHCIRVG---------------WTTRYHHNETPQQHHLGQEEQQSFENSIAELIPIHKFKKSCLDLEGRNDHTCSICLSEFEEGEELRTLPECSHSFHVSCIDMWFHSHTSCPMCRIDATPSWHGLMHYLESDSERPATRQVASMAFFVTIYHCIMVSCQNRIERHNSDQVSQSTVIRIQNFLLWRNGQELNSAQDRGATVLGLENSKIELIPRHKFEKGKGIL---DAECAVCLSEFAEDEEIRTLPECLHSFHVECIDMWLHSHPNCPTCRANASPPSSSLLLH 297
MA+D+S++LIPKL+I +AAA A+V+ +YHCI G + R+HH H + Q S ENS+AELIP HK++K L +D C++CLSEFEE E+LRTLPEC HSFH CIDMW +SH++CP+CR +A PS LMH LES+ E P + + + ++++H H+ ++ QS+ +ENS ELIP HK++KG G++ D CAVCLSEF E E++RTLPEC+HSFH ECIDMWL+SH NCP CR NA+ PS +L+H
Sbjct: 1 MAEDDSSTLIPKLIICFIAAASAAVVVTIYHCITAGHIRALLRLGPGYRTTFVLRHHH-------HQPEIPQSSMENSLAELIPSHKYQKGS-GLVSEHDGMCAVCLSEFEEAEDLRTLPECVHSFHAECIDMWLYSHSNCPVCRTNAAPSPQMLMHLLESNVETPHEQHNSPI---LSVHH------------HHQPEIPQSS----------------------------MENSLAELIPSHKYQKGSGLVSEHDGMCAVCLSEFEEAEDLRTLPECVHSFHAECIDMWLYSHSNCPVCRTNAA-PSPQMLMH 263
HSP 2 Score: 122.094 bits (305), Expect = 2.759e-30
Identity = 63/127 (49.61%), Postives = 81/127 (63.78%), Query Frame = 0
Query: 29 LYHCIRVGWTTRYHHNETP----QQHHLGQEEQQSFENSIAELIPIHKFKKSCLDLEGRNDHTCSICLSEFEEGEELRTLPECSHSFHVSCIDMWFHSHTSCPMCRIDATPSWHGLMHYLESDSERP 151
L H + T + + +P HH + Q S ENS+AELIP HK++K L +D C++CLSEFEE E+LRTLPEC HSFH CIDMW +SH++CP+CR +A PS LMH LES+ E P
Sbjct: 147 LMHLLESNVETPHEQHNSPILSVHHHHQPEIPQSSMENSLAELIPSHKYQKGS-GLVSEHDGMCAVCLSEFEEAEDLRTLPECVHSFHAECIDMWLYSHSNCPVCRTNAAPSPQMLMHLLESNVETP 272
Match: A0A5C7GYD8 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 201.83 bits (512), Expect = 4.668e-60
Identity = 131/318 (41.19%), Postives = 166/318 (52.20%), Query Frame = 0
Query: 12 KLVIVLVAAACMALVIALYHCIRVGWTTRYHHNETPQQHHLGQEEQ-----QSFENSIAELIPIHKFKKSCLDLEGRNDHTCSICLSEFEEGEELRTLPECSHSFHVSCIDMWFHSHTSCPMCRIDATPSWH--------------------------GLMHYLESDSE--------RPATRQVASMAFFVTIYHCIMVSCQNRIERHNSDQVSQSTVIRIQNFLLWRNGQELNSAQDRGATVLGLENSKIELIPRHKFEKGKGIL----DAECAVCLSEFAEDEEIRTLPECLHSFHVECIDMWLHSHPNCPTCRAN 286
+L I+L+ A V+ +YHCI VGW R + Q E S E S A+LIP HK++K L G +D TC+ICL EFEEGEELRTLPEC HS+HV CIDMW HSH++CPMCR DA S L+ ++S+S AT +AS A + IYH I+V C RH VS + Q+ + A +G T L++S ELIP +KF G + D C++CLSEF + E+IR LPECLHSFHV CIDMWL SH +CP CRA+
Sbjct: 12 RLTIMLIGFGSAAFVVMVYHCISVGWCNRNRSSPNLSQARPYMPENVEITDSSIEVSTAQLIPAHKYEKGS-GLVG-DDGTCAICLCEFEEGEELRTLPECLHSYHVPCIDMWLHSHSNCPMCRTDAAVSPFLQILRPPPPPLPPSSMSTRANSVAPILLLQLMDSNSTHFPSLSPLSVATIVIASAASALLIYHFIVVRC---CSRHREFVVSHEQ---------YLPSQQSSMAMYQG-TPSSLQHSLNELIPMYKFSTDIGSVLKSKDFTCSICLSEFNDGEDIRLLPECLHSFHVPCIDMWLVSHSSCPLCRAD 314
HSP 2 Score: 118.627 bits (296), Expect = 2.209e-28
Identity = 63/134 (47.01%), Postives = 81/134 (60.45%), Query Frame = 0
Query: 157 ASMAFFVTIYHCIMVSCQNRIERHNSDQVSQSTVIRIQNFLLWRNGQELNSAQDRGATVLGLENSKIELIPRHKFEKGKGIL--DAECAVCLSEFAEDEEIRTLPECLHSFHVECIDMWLHSHPNCPTCRANAS 288
S AF V +YHCI V NR +S +SQ+ +N + + E+++AQ LIP HK+EKG G++ D CA+CL EF E EE+RTLPECLHS+HV CIDMWLHSH NCP CR +A+
Sbjct: 21 GSAAFVVMVYHCISVGWCNR--NRSSPNLSQARPYMPENVEITDSSIEVSTAQ---------------LIPAHKYEKGSGLVGDDGTCAICLCEFEEGEELRTLPECLHSYHVPCIDMWLHSHSNCPMCRTDAA 137
HSP 3 Score: 105.916 bits (263), Expect = 1.051e-23
Identity = 60/135 (44.44%), Postives = 80/135 (59.26%), Query Frame = 0
Query: 8 SLIP-KLVIVLVAAACMALVIALYHCIRVGWTTRY------HHNETPQQHH---LGQEEQQSFENSIAELIPIHKFKKSCLDLEGRNDHTCSICLSEFEEGEELRTLPECSHSFHVSCIDMWFHSHTSCPMCRID 132
SL P + +++A+A AL+I YH I V +R+ H P Q + Q S ++S+ ELIP++KF + D TCSICLSEF +GE++R LPEC HSFHV CIDMW SH+SCP+CR D
Sbjct: 182 SLSPLSVATIVIASAASALLI--YHFIVVRCCSRHREFVVSHEQYLPSQQSSMAMYQGTPSSLQHSLNELIPMYKFSTDIGSVLKSKDFTCSICLSEFNDGEDIRLLPECLHSFHVPCIDMWLVSHSSCPLCRAD 314
Match: B9HTJ5 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 150.214 bits (378), Expect = 2.229e-42
Identity = 78/150 (52.00%), Postives = 100/150 (66.67%), Query Frame = 0
Query: 4 DNSNSLIPKLVIVLVAAACMALVIALYHCIRVGWTTRYHHNETPQQHHL-GQEEQQSFENSIAELIPIHKFKKSCLDLEGRNDHTCSICLSEFEEGEELRTLPECSHSFHVSCIDMWFHSHTSCPMCRIDATPSWHGLMHYLESDSERPA 152
D+ NS K+ ++L+ ALVIALYHCI + + P+++ + Q S ENS A+LIP +KF+K + L G +D TC+ICLSEFEEGEELRTLPEC HS+HV CIDMW HSHT+CPMCR D TPS + + DSERP+
Sbjct: 6 DDINS---KIAVLLIGVGSAALVIALYHCIAMRRFRATTTQQRPRRYGIETMATQSSIENSTAQLIPAYKFQKG-MGLVG-DDGTCAICLSEFEEGEELRTLPECLHSYHVECIDMWLHSHTNCPMCRTDTTPSPGVYLSARDLDSERPS 150
HSP 2 Score: 119.783 bits (299), Expect = 1.315e-30
Identity = 62/136 (45.59%), Postives = 79/136 (58.09%), Query Frame = 0
Query: 156 VASMAFFVTIYHCIMVSCQNRIERHNSDQVSQSTVIRIQNFLLWRNGQELNSAQDRGATVLGLENSKIELIPRHKFEKGKGIL--DAECAVCLSEFAEDEEIRTLPECLHSFHVECIDMWLHSHPNCPTCRANASP 289
V S A + +YHCI + R + Q + R G E + Q +ENS +LIP +KF+KG G++ D CA+CLSEF E EE+RTLPECLHS+HVECIDMWLHSH NCP CR + +P
Sbjct: 19 VGSAALVIALYHCIAM---RRFRATTTQQRPR------------RYGIETMATQS------SIENSTAQLIPAYKFQKGMGLVGDDGTCAICLSEFEEGEELRTLPECLHSYHVECIDMWLHSHTNCPMCRTDTTP 133
Match: A0A4U5R5B6 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 149.828 bits (377), Expect = 3.656e-42
Identity = 77/150 (51.33%), Postives = 99/150 (66.00%), Query Frame = 0
Query: 4 DNSNSLIPKLVIVLVAAACMALVIALYHCIRVGWTTRYHHNETPQQHHL-GQEEQQSFENSIAELIPIHKFKKSCLDLEGRNDHTCSICLSEFEEGEELRTLPECSHSFHVSCIDMWFHSHTSCPMCRIDATPSWHGLMHYLESDSERPA 152
D+ NS K+ ++L+ ALVI LYHC+ + + P+Q+ + Q S ENS A+LIP +KF+K + L G +D TC+ICLSEFEEGEELRTLPEC HS+HV CIDMW HSHT+CPMCR D TPS + + DSERP+
Sbjct: 6 DDINS---KIAVLLIGVGSAALVITLYHCVSIRRFRAPTTQQRPRQYGIETMATQSSIENSTAQLIPAYKFQKG-MGLVG-DDGTCAICLSEFEEGEELRTLPECLHSYHVECIDMWLHSHTNCPMCRTDTTPSPGVYLSARDLDSERPS 150
HSP 2 Score: 120.168 bits (300), Expect = 1.121e-30
Identity = 63/136 (46.32%), Postives = 81/136 (59.56%), Query Frame = 0
Query: 156 VASMAFFVTIYHCIMVSCQNRIERHNSDQVSQSTVIRIQNFLLWRNGQELNSAQDRGATVLGLENSKIELIPRHKFEKGKGIL--DAECAVCLSEFAEDEEIRTLPECLHSFHVECIDMWLHSHPNCPTCRANASP 289
V S A +T+YHC+ I R + Q R + + G E + Q +ENS +LIP +KF+KG G++ D CA+CLSEF E EE+RTLPECLHS+HVECIDMWLHSH NCP CR + +P
Sbjct: 19 VGSAALVITLYHCV------SIRRFRAPTTQQ----RPRQY-----GIETMATQS------SIENSTAQLIPAYKFQKGMGLVGDDGTCAICLSEFEEGEELRTLPECLHSYHVECIDMWLHSHTNCPMCRTDTTP 133
Match: A0A6P6VJB3 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 149.443 bits (376), Expect = 4.889e-42
Identity = 84/163 (51.53%), Postives = 107/163 (65.64%), Query Frame = 0
Query: 1 MAQDNSNSLIPKLVIVLVAAACMALVIALYHCIRVG-------WTTRYHHNETPQQHHLGQE-EQQSFENSIAELIPIHKFKKSCLDLEGRNDHTCSICLSEFEEGEELRTLPECSHSFHVSCIDMWFHSHTSCPMCRIDATPSWHGLMHYLESDSERPATRQ 155
MA+D+S++LIPKL+I +AAA A+V+ +YHCI G RY + HH E Q S ENS+AELIP HK++K L +D C++CLSEFEEGE+LRTLPEC HSFH CIDMW +SH++CP+CR +A PS LMH LES+ E P R
Sbjct: 1 MAEDDSSTLIPKLIICFIAAASAAVVVTIYHCITAGHIRALLRLGPRYRTTFVLRHHHHQPEIPQSSMENSLAELIPSHKYQKGS-GLVSEHDGMCAVCLSEFEEGEDLRTLPECVHSFHAECIDMWLYSHSNCPVCRTNAAPSPQMLMHLLESNVETPHERH 162
HSP 2 Score: 114.005 bits (284), Expect = 1.882e-28
Identity = 53/84 (63.10%), Postives = 65/84 (77.38%), Query Frame = 0
Query: 217 GLENSKIELIPRHKFEKGKGIL---DAECAVCLSEFAEDEEIRTLPECLHSFHVECIDMWLHSHPNCPTCRANASPPSSSLLLH 297
+ENS ELIP HK++KG G++ D CAVCLSEF E E++RTLPEC+HSFH ECIDMWL+SH NCP CR NA+ PS +L+H
Sbjct: 67 SMENSLAELIPSHKYQKGSGLVSEHDGMCAVCLSEFEEGEDLRTLPECVHSFHAECIDMWLYSHSNCPVCRTNAA-PSPQMLMH 149
Match: A0A5N6L9Q8 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 144.821 bits (364), Expect = 2.969e-40
Identity = 82/165 (49.70%), Postives = 103/165 (62.42%), Query Frame = 0
Query: 7 NSLIPKLVIVLVAAACMALVIALYHCIRVGWTTRYHHNETPQQ-HHLG--QEEQQSFENSIAELIPIHKFKKSC-LDLEGRN---DHTCSICLSEFEEGEELRTLPECSHSFHVSCIDMWFHSHTSCPMCRIDATPSWHGLMHYLESDSERPATRQVASMAFFVT 164
NSL KL+ +LV + +A+++A+YH I + W R ++ P HH G QE S ENS+ LIP HK +K LD G N D CSICL EFEE EELRTLPEC HSFHV CIDMW SH++CP+CR +A PS L L+SDS+ RQ AS F ++
Sbjct: 4 NSLTLKLISLLVIVSLIAILMAVYHFITINWCNRRRNHIPPHHVHHQGHNQENDYSLENSVVLLIPTHKHQKGLGLDSNGGNSDDDAMCSICLCEFEEDEELRTLPECKHSFHVPCIDMWLSSHSTCPICRANAIPSTQILFQILDSDSDVDV-RQEASNIFLIS 167
HSP 2 Score: 102.834 bits (255), Expect = 3.676e-24
Identity = 51/87 (58.62%), Postives = 58/87 (66.67%), Query Frame = 0
Query: 217 GLENSKIELIPRHKFEKGKGIL--------DAECAVCLSEFAEDEEIRTLPECLHSFHVECIDMWLHSHPNCPTCRANASPPSSSLL 295
LENS + LIP HK +KG G+ DA C++CL EF EDEE+RTLPEC HSFHV CIDMWL SH CP CRANA P + L
Sbjct: 59 SLENSVVLLIPTHKHQKGLGLDSNGGNSDDDAMCSICLCEFEEDEELRTLPECKHSFHVPCIDMWLSSHSTCPICRANAIPSTQILF 145
Match: A0A118K5X0 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 144.05 bits (362), Expect = 5.893e-40
Identity = 75/160 (46.88%), Postives = 104/160 (65.00%), Query Frame = 0
Query: 9 LIPKLVIVLVAAACMALVIALYHCIRVGWTTRYHHNETP---QQHHLGQEEQQSFENSIAELIPIHKFKK-SCLDLEGR----NDHTCSICLSEFEEGEELRTLPECSHSFHVSCIDMWFHSHTSCPMCRIDATPSWHGLMHYLESDSERPATRQVASMA 160
L KL+ +LV + +A+++A+YH + VGW + P QH+ Q+ S ENS+ LIP HK +K S L + GR +D CSICL EFEEGEELRTLPECSHSFHV CIDMW +SH++CP+CR +A PS L +L+SDS+ ++ +++
Sbjct: 6 LTLKLISLLVIVSLVAILVAVYHFVTVGWFNYWWRPTPPHHVNQHNRHQDNDYSLENSVVLLIPSHKHQKGSRLRVSGRERGDDDAMCSICLCEFEEGEELRTLPECSHSFHVPCIDMWLYSHSTCPVCRANAVPSSQILFQFLDSDSDTEVRQEASNIV 165
HSP 2 Score: 102.064 bits (253), Expect = 7.043e-24
Identity = 51/88 (57.95%), Postives = 58/88 (65.91%), Query Frame = 0
Query: 217 GLENSKIELIPRHKFEKG---------KGILDAECAVCLSEFAEDEEIRTLPECLHSFHVECIDMWLHSHPNCPTCRANASPPSSSLL 295
LENS + LIP HK +KG +G DA C++CL EF E EE+RTLPEC HSFHV CIDMWL+SH CP CRANA P S L
Sbjct: 59 SLENSVVLLIPSHKHQKGSRLRVSGRERGDDDAMCSICLCEFEEGEELRTLPECSHSFHVPCIDMWLYSHSTCPVCRANAVPSSQILF 146
Match: A0A6P6WPV4 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 144.05 bits (362), Expect = 6.433e-40
Identity = 81/164 (49.39%), Postives = 106/164 (64.63%), Query Frame = 0
Query: 1 MAQDNSNSLIPKLVIVLVAAACMALVIALYHCIRVG---------------WTTRYHHNETPQQHHLGQEEQQSFENSIAELIPIHKFKKSCLDLEGRNDHTCSICLSEFEEGEELRTLPECSHSFHVSCIDMWFHSHTSCPMCRIDATPSWHGLMHYLESDSE 149
MA+D+S++LIPKL+I +AAA A+V+ +YHCI G + R+HH H + Q S ENS+AELIP HK++K L +D C++CLSEFEEGE+LRTLPEC HSFH CIDMW +SH++CP+CR +A PS LMH LES+ E
Sbjct: 1 MAEDDSSTLIPKLIICFIAAASAAVVVTIYHCITAGHIRALLRLGPGYRTTFVFRHHH-------HQPEMPQSSMENSLAELIPSHKYQKGS-GLVSEHDGMCAVCLSEFEEGEDLRTLPECVHSFHAECIDMWLYSHSNCPVCRTNAAPSPQMLMHLLESNVE 156
HSP 2 Score: 114.39 bits (285), Expect = 1.445e-28
Identity = 53/83 (63.86%), Postives = 65/83 (78.31%), Query Frame = 0
Query: 218 LENSKIELIPRHKFEKGKGIL---DAECAVCLSEFAEDEEIRTLPECLHSFHVECIDMWLHSHPNCPTCRANASPPSSSLLLH 297
+ENS ELIP HK++KG G++ D CAVCLSEF E E++RTLPEC+HSFH ECIDMWL+SH NCP CR NA+ PS +L+H
Sbjct: 68 MENSLAELIPSHKYQKGSGLVSEHDGMCAVCLSEFEEGEDLRTLPECVHSFHAECIDMWLYSHSNCPVCRTNAA-PSPQMLMH 149
Match: A0A5N6Q8J0 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 143.28 bits (360), Expect = 4.869e-39
Identity = 79/158 (50.00%), Postives = 97/158 (61.39%), Query Frame = 0
Query: 6 SNSLIPKLVIVLVAAACMALVIALYHCIRVGWTTRYHHNETP-----QQHHLGQEEQQSFENSIAELIPIHKFKKSC-LDLEGRN---DHTCSICLSEFEEGEELRTLPECSHSFHVSCIDMWFHSHTSCPMCRIDATPSWHGLMHYLESDSERPATR 154
NSL KL+ +LV + +A+++A+YH I + W R N P QQ H QE S ENS+ LIP HK +K LD G N D CSICL EFEE EELRTLPEC HSFHV CIDMW SH++CP+CR +A PS L L+SDS+ A +
Sbjct: 3 DNSLTLKLISLLVIVSLIAVLMAVYHFITINWCNRRRRNPIPPHHVHQQGH-NQENDYSLENSVVLLIPTHKHQKGLGLDSNGGNSDDDAMCSICLCEFEEDEELRTLPECKHSFHVPCIDMWLSSHSTCPICRANAIPSTQILFQILDSDSDVEALK 159
HSP 2 Score: 102.834 bits (255), Expect = 1.157e-23
Identity = 51/86 (59.30%), Postives = 58/86 (67.44%), Query Frame = 0
Query: 218 LENSKIELIPRHKFEKGKGIL--------DAECAVCLSEFAEDEEIRTLPECLHSFHVECIDMWLHSHPNCPTCRANASPPSSSLL 295
LENS + LIP HK +KG G+ DA C++CL EF EDEE+RTLPEC HSFHV CIDMWL SH CP CRANA P + L
Sbjct: 61 LENSVVLLIPTHKHQKGLGLDSNGGNSDDDAMCSICLCEFEEDEELRTLPECKHSFHVPCIDMWLSSHSTCPICRANAIPSTQILF 146
Match: A0A6A6N057 (RING-type E3 ubiquitin transferase {ECO:0000256|ARBA:ARBA00012483} (2.3.2.27 {ECO:0000256|ARBA:ARBA00012483}))
HSP 1 Score: 143.28 bits (360), Expect = 2.192e-38
Identity = 65/124 (52.42%), Postives = 87/124 (70.16%), Query Frame = 0
Query: 12 KLVIVLVAAACMALVIALYHCIRVGWTTRYHHNETPQQHHLGQ--EEQQSFENSIAELIPIHKFKKSCLDLEGRNDHTCSICLSEFEEGEELRTLPECSHSFHVSCIDMWFHSHTSCPMCRIDA 133
K+ I+L+ ALV+ +YHC+ +GW R + QQ + Q E SFENS A LIPI K++K + L G ++ TC+ICLSEFEEGEELR LPEC HS+H++CIDMW +SH++CP+CR DA
Sbjct: 11 KVTILLIGVGLAALVVTIYHCLAIGWRNRDQVGRSSQQLNNSQTRESPSSFENSTAHLIPIFKYQKG-MGLGGDDEETCAICLSEFEEGEELRALPECKHSYHMACIDMWLYSHSNCPVCRTDA 133
HSP 2 Score: 113.62 bits (283), Expect = 3.973e-27
Identity = 62/142 (43.66%), Postives = 82/142 (57.75%), Query Frame = 0
Query: 156 VASMAFFVTIYHCIMVSCQNRIERHNSDQVSQSTVIRIQNFLLWRNGQELNSAQDRGATVLGLENSKIELIPRHKFEKGKGILDAE---CAVCLSEFAEDEEIRTLPECLHSFHVECIDMWLHSHPNCPTCRANASPPSSSL 294
V A VTIYHC+ + +NR DQV +S+ Q+LN++Q R + ENS LIP K++KG G+ + CA+CLSEF E EE+R LPEC HS+H+ CIDMWL+SH NCP CR +A P +
Sbjct: 19 VGLAALVVTIYHCLAIGWRNR------DQVGRSS-------------QQLNNSQTRESPS-SFENSTAHLIPIFKYQKGMGLGGDDEETCAICLSEFEEGEELRALPECKHSYHMACIDMWLYSHSNCPVCRTDALSPEPAF 140
| Match Name | Stats | Description |
|---|---|---|
| A0A068TUU8 | E-Value: 1.076e-73, PID: 43.81 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A5C7GYD8 | E-Value: 4.668e-60, PID: 41.19 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| B9HTJ5 | E-Value: 2.229e-42, PID: 52.00 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A4U5R5B6 | E-Value: 3.656e-42, PID: 51.33 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A6P6VJB3 | E-Value: 4.889e-42, PID: 51.53 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A5N6L9Q8 | E-Value: 2.969e-40, PID: 49.70 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A118K5X0 | E-Value: 5.893e-40, PID: 46.88 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A6P6WPV4 | E-Value: 6.433e-40, PID: 49.39 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A5N6Q8J0 | E-Value: 4.869e-39, PID: 50.00 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
| A0A6A6N057 | E-Value: 2.192e-38, PID: 52.42 | RING-type E3 ubiquitin transferase {ECO:0000256|AR... [more] |
Pages
back to top| Name | Description |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |