MSPATKSKSKSKEKPLTKATKELQKASQKYPESNNGSTPASAYNPLSGTF
HSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCS
GESEDHKEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQEL
HERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFE
GTEQESQTKDIGSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCE
GDLDKAEETLNSQKPEPITHPKPEESASLKHAMMHQEKPTSAVTTLLNRN
EGEMAYSKGAVALPTHPATGSRNQLSSKIIPSKPQTEKRVSGNYNSSLSY
SSTGPIQVASSSAKVMAQLGVGLEGRPFHQGAAIKEPIVMMQRPQSINIK
PSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFGTGSQHF
YPQSQSRNLGPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAARPVAPSWSP
VGTSSSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSID
WTLKSNPMSPPKLNDLMLEDRSGGLMRGLSSMHSTNGVRVAGLQDGGPTE
ATTSGVPREWTSPFAGKDIFSLPRQFVTSPSP*
| Relationships |
|---|
| The polypeptide, DCAR_029735, derives from mRNA, DCAR_029735. |

Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5B7B965 (UBA domain-containing protein {ECO:0000259|PROSITE:PS50030})
HSP 1 Score: 684.1 bits (1764), Expect = 0.000e+0
Identity = 405/649 (62.40%), Postives = 484/649 (74.58%), Query Frame = 0
Query: 1 MSPATKSKSKSKEKPLTKATKELQKASQKYPESNN--GSTPASAYNPLSGTFHSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCSGESEDHKEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFEGTEQESQTKDIGSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCEGDLDKAEETLNSQKPE-PITHPKPEESASLKHAMMHQEKPTSAVTTLLNRNEGEMAYSKGAVALPTHPATGSRNQLSSKIIPSKPQTEKRV-SGNYNSSLSYSSTGPIQVASSSAKVMAQLGV-GLEGRPFHQGAAIKEPIVMMQRPQSINIKPSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFGTG---SQHFYPQSQS-RNLGPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAARPVAPSWSPVGT-----SSSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSIDWTLKSNPMSPPKLNDLMLEDRSGGLMRGLSSMH--STNGVRVAGLQDGG-PTEATTSGVPREWTSPFAGKDIFSLPRQFVTSPSP 632
MSPA+KSKSKSK+K +A KE QKAS K S N +PASAYNP+SGTFH+LD+A +S PPL +NGRFRNIEETD+HSG+ H TA EYDSLSNN SCSGESEDHKEK +T R + + SDN+KREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLE LSQQ++AMGF+SERAT+ALMLNEGR++ESV+WLFEG+E E+Q KD+GS ANLKIDI+EE+ARI MEV +KCSKQEVER V++CEGDL+KAEETL +QKPE P+T + EE+ + KH + +EKPT +VT +NE + Y +GA T P +G+RN S K KP EKR + +SS+SYS P+QVA SSA++ Q GV G E R QG ++EP++MMQRPQSINIK + V N SASPPG WY NN + V++M NGK++H QS+G+ G G SQHFY Q+QS R+ G +N +S+Q Q +Y Q YMS+SVDP AAR + SWS +G S SPSLTVPSSLGLFSG+GS + G S VDW+ D MSHCDYNSIDWTL+SN S K + LML S GLM GLSSM NG+R+ GLQDGG TEAT+SG REWTSPFAGKDIFSLPRQFVTSPSP
Sbjct: 1 MSPASKSKSKSKDKSSARAAKEQQKASSKLSGSTNTGNGSPASAYNPISGTFHTLDTAPVSSYPPLHNNGRFRNIEETDEHSGSSHGTAPEYDSLSNNGSCSGESEDHKEKTASTTPRQETIPGSDNDKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLEVLSQQLMAMGFSSERATLALMLNEGRVEESVSWLFEGSE-ETQKKDLGSEANLKIDISEEIARIKVMEVTYKCSKQEVERAVIACEGDLEKAEETLKAQKPEPPVTPLQLEETDNPKHPIRPKEKPTVSVTIQQRKNERDPNYVRGAT---TVPESGNRNLQSLKTNQPKPLAEKRGPTMGSSSSVSYSMASPMQVAPSSAQMEVQHGVGGHEVRSIQQG-TVREPVIMMQRPQSINIKQNLVSNVSASPPGAIGWYTNNALAVESMKSNGKLLHDQSTGSLGPGNLNSQHFYLQTQSTRSTGRENLTSQQSYPQTRYTQH-PYMSSSVDPAAAR-MGGSWSTMGASSPSPSPSPSLTVPSSLGLFSGWGSTGSLGSNSQVDWSTGDQMSHCDYNSIDWTLESNSAS-SKRSGLMLGQSSSGLMLGLSSMRMAGVNGIRITGLQDGGVVTEATSSGGLREWTSPFAGKDIFSLPRQFVTSPSP 641
Match: A0A2N9IFL3 (UBA domain-containing protein {ECO:0000259|PROSITE:PS50030})
HSP 1 Score: 577.785 bits (1488), Expect = 0.000e+0
Identity = 356/662 (53.78%), Postives = 438/662 (66.16%), Query Frame = 0
Query: 1 MSPATKSKSKSKEKPLTKATKELQKASQK--YPESNNGSTPASAYNPLSGTFHSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCSGESEDHKEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFEGTEQESQTKDI---GSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCEGDLDKAEETLNSQK-PEPITHPKPEESASLKHAMMHQEKPTSAVTTLLNRNEGEMAYSKGAVALPTHPATGSRNQLSSKIIPSKPQTEKR-VSGNYNSSLSYSSTGPIQVASSSAKVMAQLG-VGLEGRPFHQGAAIKEPIVMMQRPQSINIKPSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFGTGSQHFYPQSQSRNLGPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAARPVAPSWSPVGTS-------------------SSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSIDWTLK--SNPMSPPKLNDLMLEDRSGGLMRGLSSMHSTNGVRVAGLQDGG-PTEATTSGVPREWTSPFAGKDIFSLPRQFVTSPSP 632
MSPA+KSKSKSK K A K+ QK S K + G +PASAYNP+SGTFH+L+++S +SPP NGRFRNI++TD+HS + H T EYDS+SNN SCSGESED KEK + R + V SDN+KREKIRQKNERKHQRQRERRAQELH+RC+GYLMSRKLE+LSQQ+VAMGF SERAT+ALMLNEG+++ESV WLFE E+E+ +KDI GSGANLKIDI+EE+ARIS +EV ++CSKQEVER VV+CEGDLDKAE+TL +QK +P T KPEE+ ++ M QE P ++VT R E + + K A A+PT P G+RN K K EKR ++ + S S + P+QVA SSAK+ A+LG VG EGR HQG A++EP+V+MQRPQSIN K V + SAS G WY N+V GV+N+ NGK V +QS+G+F GP++ S Q+ QA Y ++ +M VD +A + SWS +G S SS SLTVPSSLGLFSG GS T G SHVDWN +M DY SIDWTL S+ S L R+ MR + STNG ++GLQDGG TE ++S EWTSPFAGKDIFS PRQFVTSPSP
Sbjct: 1 MSPASKSKSKSKNKASAGAAKDQQKTSSKPSGSSNTGGGSPASAYNPVSGTFHTLETSSVPTSPPFHENGRFRNIDDTDEHSSSPHGTVSEYDSVSNNGSCSGESEDQKEKIAHSTPRQEAVPGSDNDKREKIRQKNERKHQRQRERRAQELHDRCNGYLMSRKLEALSQQLVAMGFPSERATLALMLNEGKVEESVTWLFERNEEETHSKDITNLGSGANLKIDISEEVARISALEVSYRCSKQEVERAVVACEGDLDKAEDTLRTQKQDQPATLSKPEETVETRNMMRPQEMPIASVTIQQRRFERDFNFPKTAAAVPTFPEPGNRNLQLLKAHQLKALAEKRWLAMGSSPSASLNLAPPMQVAPSSAKMEARLGVVGNEGRMIHQG-AVREPVVVMQRPQSINAKQHPVSSISASASGAVSWYANSVPGVENIRSNGKFVQNQSAGSF----------------GPEHQRSEQFYHQAPY-KEFPFMFGPVDSTSAG-LGGSWSTMGASSPSLTVPSEPRGSWSTMGASSHSLTVPSSLGLFSGQGSAGTFGSSSHVDWNTGGLMPELDYTSIDWTLDYHSSSKSSGLWLGLSSLLRNSSGMR----LGSTNGKFISGLQDGGVATETSSSAGLHEWTSPFAGKDIFSAPRQFVTSPSP 639
Match: A0A660KPU7 (UBA domain-containing protein {ECO:0000259|PROSITE:PS50030})
HSP 1 Score: 568.926 bits (1465), Expect = 0.000e+0
Identity = 333/633 (52.61%), Postives = 422/633 (66.67%), Query Frame = 0
Query: 22 ELQKASQKYPESNN--GSTPASAYNPLSGTFHSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCSGESEDHKEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFEGTEQESQTKDI---GSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCEGDLDKAEETLNSQKPE-PITHPKPEESASLKHAMMHQEKPTSAVTTLLNRNEGEMAYSKGAVALPTHPATGSRNQLSSKIIPSKPQTEKRVSGNYNS-SLSYSSTGPIQVASSSAKVMAQLG-VGLEGRPFHQGAAIKEPIVMMQRPQSINIKPSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFGTGSQHFYPQSQSRNLGPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAAR---------PVAP--SWSPVGTSSSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSIDWTLKSNPMSPPKLNDLMLEDRSGGLMRGLSSMH--STNGVRVAGLQDGG-PTEATTSGVPREWTSPFAGKDIFSLPRQFVTSPSP 632
E QK S K S N G + A+AYNP+SGTFH+L+++S PPL +GRF NI++TD+HS + H T EYDS+SNN SCSGESED KEK + IR D+V SDN++REKIR KNERKHQRQRE+RAQELH+RCSGYLMSRKLE+LSQQ+VAMGF+SERAT+AL+LNEG+++ESV WLF+G+E+ + KDI GS ANLKIDI+EELA+IS +E R+K SKQEVER VV+CEGDLDKAE+T+ +QK E P T KPEE+A K+ M QE P ++ RNE + Y K A+PT P G+RN K K EKR + +S S S + T P+QVA SAKV AQLG VG EGR QG A++EP+V+MQRPQ++N K + V + SASP GT WY ++V V+N+ N K++ Q+Q+ + +N SS Q+ QA Y ++ +M VDP ++R P P SWS +G SS SLT PSSLGLF GS T G SHVDWN +M CDY SI+W + + P + L+LE S L+R S M + NG ++GLQDGG TE+++S REWTSPFAGKDIFS+PRQFV SPSP
Sbjct: 22 EQQKTSSKPSASTNTGGGSAANAYNPVSGTFHTLETSSVAPLPPLHDSGRFHNIDDTDEHSSSPHGTVSEYDSVSNNGSCSGESEDPKEKIAHSTIRQDIVPGSDNDRREKIRLKNERKHQRQREKRAQELHDRCSGYLMSRKLEALSQQLVAMGFSSERATLALILNEGKVEESVAWLFDGSEEAAHQKDITELGSRANLKIDISEELAQISVLEERYKWSKQEVERAVVACEGDLDKAEDTIRTQKQEQPATPSKPEETAGTKNLMRPQEMPAASAALQQRRNERDFNYPKTTAAVPTFPEPGNRNLQLLKTNQLKTLAEKRWAATGSSPSASLNLTPPLQVAPLSAKVEAQLGVVGNEGRILQQG-AVREPVVVMQRPQTVNAKQNHVSSVSASPAGTAPWYVSSVPAVENIRSNWKII-----------------QNQTVAISRENQSSEQFYHQAPY-KEFPFMFRQVDPTSSRGASSPSLMVPSEPRGSWSTMGGSSH-SLTAPSSLGLFPAQGSAGTFGSSSHVDWNTGGLMPDCDYTSINWAV-NYPADSKSSSGLLLEFSS--LLRNSSGMRLGNPNGKFMSGLQDGGVATESSSSAGSREWTSPFAGKDIFSVPRQFVISPSP 631
Match: A0A1U7ZE46 ((uncharacterized protein LOC104593648 {ECO:0000313|RefSeq:XP_010251914.1, ECO:0000313|RefSeq:XP_010251915.1}))
HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0
Identity = 328/645 (50.85%), Postives = 410/645 (63.57%), Query Frame = 0
Query: 39 PASAYNPLSGTFHSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCSGESEDH-KEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFEGTEQESQTKD--IGSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCEGDLDKAEETLNSQKPE-PITHPKPEESAS-------------LKHAMMHQEKPTSAVTTLLNRNEGEMAYSKGAVALPTHPATGSRN-QLSSKIIP----SKPQ----TEKRV-SGNYNSSLSYSSTGPIQVASSSAKVMAQ-LGVGLEGRPFHQGAAIKEPIVMMQRPQSINIKPSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFGTGSQHFYPQSQSRNLGPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAARPVAP-------SWSPVGTSSSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSIDWTLKSNPMSPPKL----------NDLMLEDRSGGLMRGLSSM---HSTNGVRVAGLQDGGPTEATTSGV----PREWTSPFAGKDIFSLPRQFVTSPS 631
PASAYNPLSGTFH+L+SA SSPP SNGRFRNI+ETD+HSG+ T EYDS+SNNDSCSGESED KEK T+ +R + + SDN+KR+KIRQKNERKHQRQRE+RAQELHERCSGYLMSRKLE+L+QQ+VAMGF+SERATMAL+LNEGR++ESV WLFEG E+ +Q KD + G+NLKIDI+EELARI+EMEVR KC+KQEVERVVV+CEGDL+KA ETL +QK E P PKPEE+ ++ + Q KP +VT R+E + Y+K + T ++N Q KI P ++PQ +EKR S + S+SYS P+QV+S AK A+ + VG E + G A++EP++MMQRPQSIN KP+ V + + SPP + WY N+V GV+ M +SSG G QH P++ + + + + + + P A+ PV P SWS +G++SS SL VPSSLGLFSG+GS SG S VDWN M CDY +IDWTL+S S P N M + S G + +TNGV +AGLQDGG TSG EWTSPFAGKD+FSLPRQFVTSPS
Sbjct: 37 PASAYNPLSGTFHTLESAPVVSSPPPHSNGRFRNIDETDEHSGSSLGTGAEYDSISNNDSCSGESEDQQKEKTTSAPVRQEAIPGSDNDKRDKIRQKNERKHQRQREKRAQELHERCSGYLMSRKLEALAQQLVAMGFSSERATMALILNEGRVEESVAWLFEGGEEAAQQKDSNLDGGSNLKIDISEELARIAEMEVRFKCTKQEVERVVVACEGDLEKAAETLKAQKQEAPSASPKPEETGDPPVANGVKLAVSVTQNLVRQQAKPIPSVTIQQRRDERDFNYTKAVPTVVTSSEPANKNLQSLRKIQPKSEWARPQVATSSEKRWPSAGSSPSVSYSLASPLQVSSPPAKAEARYVVVGSEVKNLQTG-AVREPVIMMQRPQSINAKPNPVTSINPSPPVSAGWYSNSVAGVEIM---------KSSG----GLQHI-------------PTT---SLSSSNLSSQQFYQSQYQPFASSPVEPRTTSWGGSWSTLGSASS-SLAVPSSLGLFSGWGSTGASGSNSPVDWNTGGSMPQCDYTNIDWTLESTSSSKPNGLWLGLASFMNNSRMYDSWSSATSAGAKPVMRSATTNGVCIAGLQDGGVAATDTSGTSSAGSHEWTSPFAGKDLFSLPRQFVTSPS 650
Match: A0A7N2LCW6 (UBA domain-containing protein {ECO:0000259|PROSITE:PS50030})
HSP 1 Score: 540.036 bits (1390), Expect = 0.000e+0
Identity = 318/627 (50.72%), Postives = 406/627 (64.75%), Query Frame = 0
Query: 40 ASAYNPLSGTFHSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCSGESEDHKEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFEGTEQESQTKD---IGSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCEGDLDKAEETLNSQKPEP-ITHPKPEESASLKHAMMHQEKPTSAVTTLLNRNEGEMAYSKGAVALPTHPATGSRNQLSSKIIPSKPQTEKR---VSGNYNSSLSYSSTGPIQVASSSAKVMAQLG-VGLEGRPFHQGAAIKEPIVMMQRPQSINIKPSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFGTGSQHFYPQSQSRNLGPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAARPVAPSWSPVGTS-------------------SSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSIDWTLKSNPMSPPKLNDLMLEDRSGGLMRGLSS-MHSTNGVRVAG-----LQDGG-PTEATTSGVPREWTSPFAGKDIFSLPRQFVTSPSP 632
ASAYNP+SGTFHS++++S +SPP NGR+ NI++TD+HS + H T EYDS+SNN SCSGESED K+K + R + V SDN++REKIR KNERKHQRQRERRAQELH+RC+GYLMSRKLE+LSQQ+VAMGF SERAT+ALMLNEG+++ESV WLFE E+E+ D +GS ANLKIDI+EELARIS +EVR+KCSKQEVER VV+ EGDLDKAE+TL +QK E T KPEE+A ++ + QE P ++VT R E + Y + A+A+P G+RN K K EKR + ++++ L+ + P+QVA SAKV ++L VG +GR QG A++EP+V+MQRPQSIN K + V + S S G WY ++V GVDN+ NGK + +QS+G F GP+N S Q+ QA Y ++ M VD +A + SWS +G S SS SLTVPSSLGLFSG GS T G P+HVDWN +M DY SIDWTL D +S GL GLSS + +++G+R+ + DGG TE ++S EWTSPFAGKDIFS PRQFV+SPSP
Sbjct: 42 ASAYNPVSGTFHSIETSSAATSPPFHDNGRYCNIDDTDEHSSSPHGTVSEYDSISNNGSCSGESEDPKDKIAHSTPRQEAVPGSDNDRREKIRLKNERKHQRQRERRAQELHDRCNGYLMSRKLEALSQQLVAMGFPSERATLALMLNEGKVEESVTWLFERNEEENHQNDNTNLGSQANLKIDISEELARISALEVRYKCSKQEVERAVVTFEGDLDKAEDTLRTQKQEEHATMSKPEETAGTRNLIRPQEMPVASVTIQQRRIERDYNYPQTAMAVPAFSDPGNRNLQILKANHLKALAEKRWLAMGASHSAPLNLAP--PMQVAPPSAKVESRLSVVGNDGRIMQQG-AVREPVVVMQRPQSINAKQNPVSSISVSASGAVPWYASSVPGVDNIRSNGKFMQNQSAGIF----------------GPENQRSEQFYHQAPY-KEYPLMFGPVDSTSAG-LGGSWSTMGASSPSHSVPSEPRGSWNTMGASSHSLTVPSSLGLFSGQGSAGTFGSPAHVDWNTGGLMPELDYTSIDWTL-----------DYPSSAKSNGLWLGLSSFLRNSSGMRLGSTNGKFISDGGVATETSSSAGLNEWTSPFAGKDIFSAPRQFVSSPSP 636
Match: A0A835TKY6 ((Uncharacterized protein {ECO:0000313|EMBL:KAF9688817.1}))
HSP 1 Score: 526.168 bits (1354), Expect = 3.859e-178
Identity = 335/660 (50.76%), Postives = 431/660 (65.30%), Query Frame = 0
Query: 1 MSPATKSKSKSKEKPLTKATKELQKASQKYPESNN--GSTPASAYNPLSGTFHSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCSGESEDHKEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFEGTEQESQTKD--IGSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCEGDLDKAEETLNSQKPE-PITHPKPEESASLKHAMMHQEK--PTSAVTTLLNRNEGEMAYSKGAVALPTHPATGSRNQLSSKIIPSKPQTEKRVSGNYNSSLSYSSTGPI--QVASSSAKVMAQLGV-GLEGRPFHQGAAIKEPIVMMQRPQSINIKPSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFG----TGSQHFYPQSQSRN----LGPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAARPVAPSWSPVGTSSSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSIDWTLKSNPMSPPKLNDLMLEDRSGGLMRGLSSM---------HSTNGVRVAGLQDGG-PTEATTSGVPREWTSPFAGKDIFSLPRQFVTSPSP 632
MSPA+KSK+KSK+K L K+ KE Q S K S N P +AYNP SGTFH+L++ SG + PL NGRFRNI+E ++HS + H T EYDS+SNN SCSGESED KEKA +T R + V + D++KREKIR KNE+KHQRQRE+RAQELHERCSGYL SRKLE LS+Q+VAMGF+ ERAT+ALMLNEG +++SVNWLFEG+E+E+Q+KD +GSG +LKIDI EELA+IS ME+R+KCSKQEVERVVV+CEGDL KAEETL++QK E P T P+PE +A + EK PT++VT NE + Y K A+ +PT+ GSRN L + P K +KR G SS +SS+ + QVA S K+ +LG+ G EG+ Q ++EP++MMQRPQSIN ++V ++SA+P T+ WY NNV GV+NM N K++ + S+ N G + Q ++P S+ N GP ++RQ T++ + + S T+S PSL PSSLGLF+G+GS T G P HVDWN +M DY SIDWTL SN +L +S GL LSS+ STN ++GL+D G E ++S EWTSPFAGKD+FSLPRQF TSPSP
Sbjct: 1 MSPASKSKTKSKDKTLVKSAKEQQNVSIKPSGSTNIVSGNPVNAYNPTSGTFHALETPSGAAFLPLHDNGRFRNIDEPEEHSSSPHGTLSEYDSVSNNGSCSGESEDIKEKAIST--RQETVGL-DSDKREKIRLKNEKKHQRQREKRAQELHERCSGYLRSRKLERLSEQLVAMGFSHERATLALMLNEGSVEKSVNWLFEGSEEEAQSKDSKLGSGGSLKIDICEELAQISAMEMRYKCSKQEVERVVVACEGDLVKAEETLDAQKQELPPTPPRPEYTADTNNLRRLHEKPLPTASVTAQQRMNEQDFNY-KTAIPVPTYSEPGSRN-LQPQNQP-KSLADKRW-GTTGSSPVFSSSMALSMQVAPPSTKIDVRLGLAGNEGKNLQQ--IVREPVIMMQRPQSINAIQNTVPSASATPV-TSGWYLNNVSGVENMRSNVKLLPNLSTRNLGLVNQSSEQFYHPVSRKENPFLFSGPAT-TNRQGGTRSPSFTVPSQLQGSYGKT-------------TASLPSLAAPSSLGLFTGWGSAGTLGSP-HVDWNTGSLMPEFDYTSIDWTLDSN----------LLSSKSNGLWMDLSSLLRNTSITRTSSTNSSFLSGLRDSGMAKETSSSAGSSEWTSPFAGKDMFSLPRQFATSPSP 625
Match: A0A836XT98 ((Ubiquitin-associated/translation elongation factor EF1B protein {ECO:0000313|EMBL:KAG5227754.1}))
HSP 1 Score: 525.783 bits (1353), Expect = 5.345e-178
Identity = 336/660 (50.91%), Postives = 433/660 (65.61%), Query Frame = 0
Query: 1 MSPATKSKSKSKEKPLTKATKELQKASQKYPESNNGST--PASAYNPLSGTFHSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCSGESEDHKEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFEGTEQESQTKD--IGSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCEGDLDKAEETLNSQKPE-PITHPKPEESASLKHAMMHQEK--PTSAVTTLLNRNEGEMAYSKGAVALPTHPATGSRNQLSSKIIPSKPQTEKRVSGNYNSSLSYSSTGPI--QVASSSAKVMAQLGV-GLEGRPFHQGAAIKEPIVMMQRPQSINIKPSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFG----TGSQHFYPQSQSRN----LGPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAARPVAPSWSPVGTSSSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSIDWTLKSNPMSPPKLNDLMLEDRSGGLMRGLSSM---------HSTNGVRVAGLQDGG-PTEATTSGVPREWTSPFAGKDIFSLPRQFVTSPSP 632
MSPA+KSK+KSK+K L K+ KE Q AS K S N ++ P +AYNP+SGTFH L++ SG + PPL NGRFRNI+E ++HS + H T EYDS+SNN SCSGESED KEKA +T R + V D++KREKIR KNE+KHQRQRE+RAQELHERCSGYL SRKLE LS+Q+VAMGF+ ERAT+ALMLNEGR+++SVNWLFEG+E+E+Q KD +GSG +LKIDI+EELA+IS ME+R+KCSKQEVERVVV+CEGDL KAEETL++QK E P T P+PE +A + EK PT++VT NE + +K A+ +PT+ GSRN L + P K +KR G SS ++SS+ + QVA S K +LG+ G EG+ Q ++EP++MMQRPQSIN K ++V ++SA+P T+ WY NNV GV+NM N + + S+ N G + Q ++P S+ N GP S+RQ T++ + + S T+S PSL PSSLGLF+G+GS T G SHVDWN +M DY+SIDWTL SN +L +S GL LSS+ STN ++GL+ G E ++S EWTSPFAGKD+FSLPRQF TSP P
Sbjct: 1 MSPASKSKTKSKDKTLVKSAKEQQNASIKPSGSTNIASGNPVNAYNPISGTFHELETPSGAAFPPLHDNGRFRNIDEPEEHSSSPHGTLSEYDSVSNNGSCSGESEDMKEKAIST--RLETVPGLDSDKREKIRLKNEKKHQRQREKRAQELHERCSGYLRSRKLEKLSEQLVAMGFSHERATLALMLNEGRVEKSVNWLFEGSEEEAQRKDSKLGSGGSLKIDISEELAQISAMEMRYKCSKQEVERVVVACEGDLVKAEETLHAQKQELPTTPPRPEYTADTNNPRRLHEKPLPTASVTAQHRMNEQDFN-NKTAIPVPTYSEPGSRN-LQPQNQP-KSLADKRW-GTTGSSPAFSSSMALSMQVAPPSTKTDVRLGLAGNEGKNLQQ--IVREPVIMMQRPQSINGKQNTVPSASATPV-TSGWYLNNVSGVENMRSNVNLPPNPSTRNLGLVNQSSEQFYHPVSRKENPFLFSGPAT-SNRQGGTRSPSFTVPSQLQGSYGKT-------------TASLPSLAAPSSLGLFTGWGSAGTLG-SSHVDWNTGSLMPEFDYSSIDWTLNSN----------LLSSKSNGLWMDLSSLLRNTSITRGSSTNSSFLSGLRGSGMAKETSSSAGSSEWTSPFAGKDMFSLPRQFATSPYP 626
Match: A0A5N5P0T9 (UBA domain-containing protein {ECO:0000259|PROSITE:PS50030})
HSP 1 Score: 525.013 bits (1351), Expect = 8.900e-178
Identity = 336/660 (50.91%), Postives = 430/660 (65.15%), Query Frame = 0
Query: 1 MSPATKSKSKSKEKPLTKATKELQKASQKYPESNNGST--PASAYNPLSGTFHSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCSGESEDHKEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFEGTEQESQTKD--IGSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCEGDLDKAEETLNSQKPE-PITHPKPEESASLKHAMMHQEK--PTSAVTTLLNRNEGEMAYSKGAVALPTHPATGSRNQLSSKIIPSKPQTEKRVSGNYNSSLSYSSTGPI--QVASSSAKVMAQLGV-GLEGRPFHQGAAIKEPIVMMQRPQSINIKPSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFG----TGSQHFYPQSQSRN----LGPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAARPVAPSWSPVGTSSSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSIDWTLKSNPMSPPKLNDLMLEDRSGGLMRGLSSM---------HSTNGVRVAGLQDGG-PTEATTSGVPREWTSPFAGKDIFSLPRQFVTSPSP 632
MSPA+KSK+KSK+K L K+ KE Q AS K S N ++ P +AYNP+SGTFH L++ S + PPL NGRFRNI+E ++HS + H T EYDS+SNN SCSGESED KEKA +T R + V D++KREKIR KNE+KHQRQRE+RAQELHERC GYL SRKLE LS+Q+VAMGF+ ERAT+ALMLNEGR+++SVNWLFEG+E+E+Q KD +GSG +LKIDI+EELA+IS ME+R+KCSKQEVERVVV+CEGDL KAEETL++QK E P T P+PE +A + EK PT++VT NE + Y K A+ +PT+ GSRN L + P K +KR G SS ++SS+ + QVA S K +LG+ G EG Q ++EP++MMQRPQSIN K ++V ++SA+P T+ WY NNV GV+NM N K+ + S+ N G + Q ++P S+ N GP S+RQ T++ + + S T+S PSL PSSLGLF+G+GS T G SHVDWN +M DY SIDWTL SN +L +S GL LSS+ STN ++GL+ G E ++S EWTSPFAGKD+FSLPRQF TSP P
Sbjct: 1 MSPASKSKTKSKDKTLVKSAKEQQNASIKPSGSTNIASGNPVNAYNPISGTFHELETPSSAAFPPLHDNGRFRNIDEPEEHSSSPHGTLSEYDSVSNNGSCSGESEDMKEKAIST--RLETVPGLDSDKREKIRLKNEKKHQRQREKRAQELHERCIGYLRSRKLERLSEQLVAMGFSHERATLALMLNEGRVEKSVNWLFEGSEEEAQRKDSKLGSGGSLKIDISEELAQISAMEMRYKCSKQEVERVVVACEGDLVKAEETLHAQKQELPPTPPRPEYTADTNNPRRLHEKPLPTASVTAQHRMNEQDFNY-KTAIPVPTYSEPGSRN-LQPQNQP-KSLADKRW-GTTGSSPAFSSSMALSMQVAPPSTKTDVRLGLAGNEGENLQQ--IVREPVIMMQRPQSINAKQNTVPSASATPV-TSGWYLNNVSGVENMRSNVKLPPNPSTRNLGLVNQSSEQFYHPVSRKENPFLFSGPAT-SNRQGGTRSPSFTVPSQLQGSYGKT-------------TASLPSLAAPSSLGLFTGWGSAGTLG-SSHVDWNTGSLMPEFDYTSIDWTLNSN----------LLSSKSNGLWMDLSSLLRNTSNTRGSSTNSSFLSGLRGSGMAKETSSSAGSSEWTSPFAGKDMFSLPRQFATSPYP 626
Match: A0A067L8Z9 (UBA domain-containing protein {ECO:0000259|PROSITE:PS50030})
HSP 1 Score: 524.628 bits (1350), Expect = 1.499e-177
Identity = 325/635 (51.18%), Postives = 419/635 (65.98%), Query Frame = 0
Query: 18 KATKELQKASQKYPESNNGS--TPASAYNPLSGTFHSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCSGESEDHKEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFEGTEQESQTKD--IGSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCEGDLDKAEETLNSQKPE----PITHPKPEESASLKHAMMHQEKPTSAVTTLLNRNEGEMAYSKGAVALPTHPATGSRNQLSSKIIPSKPQTEKRVSGNYNS-SLSYSSTGPIQVASSSAKVMAQLGV-GLEGRPFHQGAAIKEPIVMMQRPQSINIKPSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFG----TGSQHFYPQS--QSRNL--GPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAARPVAPSWS-PVGTSSSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSIDWTLKSNPMSPPKLNDLMLEDRSGGLMRGLSSMHSTNGVRVAGLQDGGPTEATTSGVP-REWTSPFAGKDIFSLPRQFVTSPSP 632
+A KE QKAS K S N + TPASAYNP+SGTFH+L+ S TSSP NGRFRNI++TD+HS + H T EYDS+SNN SCSGESED K+K TT++ R + V +N++REKIR KNE+KHQRQ+ERRAQELHERCSGYLMSRKLE+LS+Q+VAMGF+ ERAT+AL+LNEGR++ESVNWLFEG E+E++ KD +G+ +NLKIDI+EELA+IS +EVR+KCSKQEVER +V+CEGDL KAEE L +QK E P+T + ++ LK H++ +S++T RNE + Y+K ++ALP + G+R+ + S+ +KR + S S S P QV SAK+ +LGV G EG+ HQ ++EPIVMMQR QSIN K + V + SASP T WY NN GV+N+ +V +QSSG+ G Q ++P S +S NL GP + +S + + M S P A P P S V ++SSP L PSSLGLFSG+GSG T G +HVDWN +M DYNSIDWTL +N +S + G + M+S N ++GL+D G T+ T+S EWTSPFAGKDIFSLPRQFVTSPSP
Sbjct: 18 RAAKE-QKASDKSSGSTNTASGTPASAYNPISGTFHTLEIPSATSSPHFHDNGRFRNIDDTDEHSSSPHGTVSEYDSVSNNGSCSGESEDPKDK-TTSSTRQETVPGLENDRREKIRLKNEKKHQRQKERRAQELHERCSGYLMSRKLEALSEQLVAMGFSHERATLALVLNEGRVEESVNWLFEGNEEEARNKDSKLGTSSNLKIDISEELAQISVLEVRYKCSKQEVERAIVACEGDLLKAEEILQAQKLEQPATPLTSEEVTDANDLKRT--HEKPLSSSITIQQRRNEQDFNYAKTSIALPMYSEPGNRSL--QPLNQSRSLADKRWTATGTSPSFSLGMASPGQVTPQSAKLEVRLGVSGNEGKN-HQ-HILREPIVMMQRRQSINAKQNQVPSISASPSVTAGWYSNNGPGVENV---RSLVPNQSSGSLGLVNQNSEQFYHPASYKESPNLFNGPIDSASAGFRSSWNAM--------SKSPAHAVPYEPQSSYGVVSASSPPLAAPSSLGLFSGWGSG-TLGSSAHVDWNT-GVMPEFDYNSIDWTLDNNMLSSKPSGLWLGLSSLLRNSSG-TRMNSMNSSCISGLRDAGATKETSSSAGLHEWTSPFAGKDIFSLPRQFVTSPSP 630
Match: A0A067DWW5 (UBA domain-containing protein {ECO:0000259|PROSITE:PS50030})
HSP 1 Score: 522.702 bits (1345), Expect = 9.477e-177
Identity = 318/640 (49.69%), Postives = 409/640 (63.91%), Query Frame = 0
Query: 22 ELQKASQKYPESNNGS--TPASAYNPLSGTFHSLDSASGTSSPPLQSNGRFRNIEETDDHSGNLHRTAIEYDSLSNNDSCSGESEDHKEKATTTAIRPDVVTVSDNEKREKIRQKNERKHQRQRERRAQELHERCSGYLMSRKLESLSQQIVAMGFTSERATMALMLNEGRLQESVNWLFEGTEQESQTKD--IGSGANLKIDIAEELARISEMEVRHKCSKQEVERVVVSCEGDLDKAEETLNSQKPE-PITHPKPEESASLKHAMMHQEKPTSAVTTLLNRNEGEMAYSKGAVALP-THPATGSRNQLSSKIIPSKPQTEKRVSGNYNSSLSYSSTGPIQVASSSAKVMAQLGV-GLEGRPFHQGAAIKEPIVMMQRPQSINIKPSSVINSSASPPGTNQWYGNNVMGVDNMILNGKMVHSQSSGNFGTGSQHFYPQSQSRNLGPDNPSSRQYNTQAQYMQQRAYMSNSVDPVAARP--------------VAP-----SWSPVGTSSSPSLTVPSSLGLFSGFGSGATSGLPSHVDWNARDMMSHCDYNSIDW--TLKSNPMSPPKLNDLMLEDRSGGLMRGLSSMH--STNGVRVAGLQDGGP-TEATTSGVPREWTSPFAGKDIFSLPRQFVTSP 630
E QKA K S N PASAYNP+SGTFH+LD++S +SPP NGRFRNI++TD+HS H T EYDS+SNN SCSGESED KEK ++ R D + SDN++REKIR KNE+KHQRQRE+RAQELHERC GYLMSRKLE+LSQQ+VAMGF+SERAT+ALMLNEGR++ESVNWLFE +E+E++ D + S +LKIDI+EELARISE+E+R+KCSKQEVER VV+ EGDLDKAE+T+ QK E P T P+P+++A K + QEK + +T RNE + Y+K A +P T TGSRN LS SK +KR + + +S+ + + S +KV + V G EG+ Q ++EP+++MQRPQS+N K ++++SP T WY NV V+N+ N K++ GTG++ G +N SS + QA Y ++ YM N V+ ++A AP SWS +G SSPSL VPSSLGLF+ +GS T G SHVDWN +M CDY SIDW ++ S PK N L S L+R M NG ++GLQD G TEA+++G REWTSPFA KDIFS+PRQFVTSP
Sbjct: 18 EQQKAPIKPSGSANAGNGVPASAYNPISGTFHTLDTSSVATSPPYHDNGRFRNIDDTDEHSSRPHGTVSEYDSVSNNGSCSGESEDPKEKFANSS-RQDPIPGSDNDRREKIRLKNEKKHQRQREKRAQELHERCCGYLMSRKLEALSQQLVAMGFSSERATLALMLNEGRVEESVNWLFEVSEEEARNTDPKLESSGSLKIDISEELARISEIELRYKCSKQEVERAVVASEGDLDKAEDTIKVQKQELPATPPRPDDTADTKSMVRPQEKLLAPITIQQRRNERDFNYTKAAATVPITFTETGSRNLLSPVPNQSKLLADKRWAASGSSASASLTATAHMPLVSPSKVEVRQAVAGNEGKTIQQ---VREPVIVMQRPQSMNAKQIPASSAASSPQVTAGWYAKNVPAVENVRPNAKILQ-------GTGTR-----------GTENQSSELFYRQAPY-KEIPYMHNPVESISAGLGSSWSSMGSSSPSLTAPSKSRGSWSTMGM-SSPSLAVPSSLGLFASWGSAGTLGSSSHVDWNTGGLMPECDYTSIDWTLDTSTSLSSSPKPNGLWFGISS--LLRNSPGMRMGGANGTCMSGLQDNGAVTEASSAGGLREWTSPFAEKDIFSVPRQFVTSP 631
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7B965 | E-Value: 0.000e+0, PID: 62.40 | UBA domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A2N9IFL3 | E-Value: 0.000e+0, PID: 53.78 | UBA domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A660KPU7 | E-Value: 0.000e+0, PID: 52.61 | UBA domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A1U7ZE46 | E-Value: 0.000e+0, PID: 50.85 | (uncharacterized protein LOC104593648 {ECO:0000313... [more] |
| A0A7N2LCW6 | E-Value: 0.000e+0, PID: 50.72 | UBA domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A835TKY6 | E-Value: 3.859e-178, PID: 50.76 | (Uncharacterized protein {ECO:0000313|EMBL:KAF9688... [more] |
| A0A836XT98 | E-Value: 5.345e-178, PID: 50.91 | (Ubiquitin-associated/translation elongation facto... [more] |
| A0A5N5P0T9 | E-Value: 8.900e-178, PID: 50.91 | UBA domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A067L8Z9 | E-Value: 1.499e-177, PID: 51.18 | UBA domain-containing protein {ECO:0000259|PROSITE... [more] |
| A0A067DWW5 | E-Value: 9.477e-177, PID: 49.69 | UBA domain-containing protein {ECO:0000259|PROSITE... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
