MRPAGARRQKDSIAGDHRKPPPPTPTSFDPFQYNFSNRDSDASLCSSRPS
IASTTRNPSVPISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIE
TLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSW
PSLLGVMHWLVQIGNYDEVTRGNGLEYEENGMFDYALRGYFHYISGDDER
MESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVL
EEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRIC
EENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWE
LDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGID
YKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAA
LQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKE
ATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISE
MKEDYLKTVSVISEIHKSSL*
| Relationships |
|---|
| The polypeptide, DCAR_029239, derives from mRNA, DCAR_029239. |

Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5B7CC67 ((Putative kinetochore protein ndc80-like {ECO:0000313|EMBL:MPA77666.1}) (Fragment))
HSP 1 Score: 669.848 bits (1727), Expect = 0.000e+0
Identity = 354/577 (61.35%), Postives = 455/577 (78.86%), Query Frame = 0
Query: 1 MRPAGARRQKDSIAGDHRKPPPPTPTSF-DPFQY--NFSNRDSDASLCSSRPSIASTTRN----PSVPISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNYDEVTRGNGLEYEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHKSSL 570
MR AG RR K+S A D R PPPTPT+ DP+Q+ + RDSDAS CSSRPS +S N SVP++D+++QLSA+R++N YLS HS+ LKPPLPSAKDI +TL+ +L LDFP NK E++L+ VLK+L CP+K+N+SAL+APGTPHSWP+LL V+HWLVQ+ Y++ + + +E+N MF YA Y HYI GDD+ +++ D+ F+EKL ER+ +EE + L V+ELE K+EGLK+GPS +E+LE++R +LEEDVKKF+ MIEQL+GHI+ V+K LEEKEKELEAK+ E K ICEENEELK +V QG NAR+AERMKRELQAVER G+AE AR+AWE+KSW+LD+ IG+KFKELE+L IECNQAI++LKLGNGFQYELNAK STPA+VLGIDYK LKP+LASLA++ KKSSM+KLEE +SLQ+ VE+A +IEAKRN I ALQ HIDE E+Q+NLL ETQ+++S+C EAK++V++V+AE N+D+VE+EA E L+ SQ+K QE QSEEEVQ+C+REL AL+DSVSK KE M+S ISEMK D +TV +S++HK SL
Sbjct: 8 MRAAGRRRPKESFAQDRR--PPPTPTAAADPWQFMGGATGRDSDASFCSSRPSSSSIGINRSAAASVPVTDRAYQLSAIRSINAYLSSHSSQTFLKPPLPSAKDITDTLRFVLTRLDFP---PNKLEEDLYTVLKHLNCPIKLNKSALRAPGTPHSWPNLLAVIHWLVQVAMYNDHLQTRSI-FEDNSMFIYARNSYLHYIRGDDDEVDALDREFMEKLQQERDSMEENVKLLEGNVKELEAKVEGLKSGPSPRELLEKERSVLEEDVKKFHAMIEQLNGHIMAVEKVLEEKEKELEAKLVENKSICEENEELKKQVGLQGINAREAERMKRELQAVEREIGEAEVARNAWEDKSWDLDATIGRKFKELEALSIECNQAIKRLKLGNGFQYELNAKGSTPAQVLGIDYKSTLKPMLASLADDIKKSSMLKLEELVSLQQQTVESAARIEAKRNRITALQSHIDEEESQMNLLMRETQDYVSKCATEAKRMVQEVEAEAHNLDVVEREAAEFLKASQVKLQEAILQSEEEVQLCSRELFALVDSVSKHKEYMSSKISEMKSDLSETVGAVSDVHKGSL 578
Match: A0A5J5B1F0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8536519.1}))
HSP 1 Score: 665.226 bits (1715), Expect = 0.000e+0
Identity = 354/579 (61.14%), Postives = 449/579 (77.55%), Query Frame = 0
Query: 1 MRPAGARRQKDSIAGDHRKPPPPTPTSFDPFQY--NFSNRDSDASLCSSRPSIASTTRN----PSVPISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNY-DEVTRGNGLE--YEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHKSSL 570
MR AG RR K+S A D RKPPP + DP+Q + RDSDAS CSSRPS +S N SVP++D+++QLSA+R++N+YLS HS+ SLKPPLPSAKDI +TL+ +L LDF NK E++L+ VLK L CP+K+N+SAL+APGTPHSWP+LL V+HWLVQI Y D + + +E+N MF Y+L Y HYI GDD+ +++ D+ F+EKL ER+ +EE A+ L + V+ELE KLEGLK+GPS +E+LE+++ +LEED+KKF+ MIEQL+GHI+ V+K LEEKEKELEAK E KRICEENEELK RV QG N+RDAERMKRELQAVER+ GDAE AR+AWEEKSW+LD+ +G KFKELE+L I+CNQAIR+LKLGNGFQYELNAK STPA+VLG+DYK LKPVLAS A++ KKSSM+KLEE ISLQ+ VE A KIEAKRN + LQ HI+E E+QLNLL+ ETQ++ S+C EA+++V DV+AE N+DIVE EA + L+TSQ+K QE QSEEE+Q+C+REL AL+DSVSK+KE S ISEMK + +TV +S++HK SL
Sbjct: 1 MRAAGRRRPKESFAQD-RKPPPTPNAAADPWQLMGGATGRDSDASFCSSRPSSSSIGINRSAAASVPVTDRAYQLSAIRSINSYLSSHSSQTSLKPPLPSAKDITDTLRFVLARLDF---APNKLEEDLYTVLKQLNCPIKLNKSALRAPGTPHSWPNLLAVIHWLVQIAMYNDHLINSSQTRSIFEDNSMFIYSLNSYLHYIRGDDDSVDALDREFMEKLQQERDSMEENAKLLEDNVKELEAKLEGLKSGPSPRELLEKEKSVLEEDIKKFHAMIEQLNGHIMTVEKVLEEKEKELEAKFGENKRICEENEELKKRVGLQGINSRDAERMKRELQAVERDIGDAEVARNAWEEKSWDLDTTMGHKFKELEALSIDCNQAIRRLKLGNGFQYELNAKGSTPAQVLGLDYKATLKPVLASFADDIKKSSMMKLEELISLQQQTVENAAKIEAKRNRLMELQSHIEEEESQLNLLKKETQDYTSKCATEARRMVRDVEAEAHNLDIVEGEAADFLKTSQVKLQEAILQSEEEIQLCSRELFALVDSVSKYKEYTASKISEMKSNLSETVGAVSDVHKGSL 575
Match: A0A2G9FZZ3 ((Centromere-associated protein HEC1 {ECO:0000313|EMBL:PIM98610.1}))
HSP 1 Score: 638.262 bits (1645), Expect = 0.000e+0
Identity = 332/571 (58.14%), Postives = 419/571 (73.38%), Query Frame = 0
Query: 1 MRPAGARRQKDSIAGDHRKPPPPTPTSFDPFQY---NFSNRDSDASLCSSRPSIASTTRNPSVP-ISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNYDEVTRGNGLEYEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHK 567
MR AG RR +S+A D R PPP S DP+Q+ RDSDAS CSSRPSIAS R +VP +SD+S Q SALRT+N+YL+ S FSLK PLPSAKDIIETLK +L L F K +++L LK+L CP+K+N+SAL+APGTPHSWP+LL V+HWLVQI Y++ +E + MF Y + Y YI GDDE M++ D+ + ++ R+ VEE + L E V+ELE KLEGLK PS+KEVLE+++ +LE+DV KF+ +IEQL GH+V VQK LEEK++ LEAKVEERKR CEENEELK ++EEQG N RDAERMKRE+QAVER+ + EAAR+ WEEK WELDSEIG+KFKELE L++ECNQAIR+LKLGNGFQY+LNAK STPAEVLG+DYK LKP L S AE+ ++SM KLEE ISL++ E A K+E KRN I LQ HIDEVE QLN++R ETQE+ SRC EA+++ E+V E Q M VEKEA E L+TS+ + QE Q+EEEV++CA+EL LI+SVS +KE M S I+ M+ D L+T +++I+K
Sbjct: 1 MRAAGRRRATESVAPDRRPPPPTPTNSADPWQFLATPVPGRDSDASFCSSRPSIASAGRPSAVPNVSDRSHQASALRTINSYLASQSVPFSLKHPLPSAKDIIETLKFLLNRLGF---ASKKIDEDLSHALKFLKCPLKLNKSALRAPGTPHSWPNLLAVIHWLVQIIKYNDYMMNTLPTFESDKMFMYTINSYLLYIRGDDEAMDALDEECIREMRGWRDKVEENVKALEENVKELESKLEGLKGVPSQKEVLEQEKAVLEKDVTKFHVIIEQLKGHLVEVQKKLEEKDRALEAKVEERKRCCEENEELKKKIEEQGINLRDAERMKREMQAVERDIEETEAARNGWEEKIWELDSEIGQKFKELERLVMECNQAIRRLKLGNGFQYQLNAKGSTPAEVLGLDYKSILKPALVSFAEDITRNSMGKLEELISLRQQSGENAAKLEEKRNRIEVLQSHIDEVEAQLNIMRKETQEYASRCAAEARRMAEEVDMEAQKMSAVEKEAAEFLKTSKAELQETVMQTEEEVKLCAQELFDLINSVSTYKEYMGSKIARMRSDLLETAGAVADIYK 568
Match: A0A2Z7AIK1 ((Uncharacterized protein {ECO:0000313|EMBL:KZV21178.1}))
HSP 1 Score: 634.024 bits (1634), Expect = 0.000e+0
Identity = 334/573 (58.29%), Postives = 413/573 (72.08%), Query Frame = 0
Query: 1 MRPAGARRQKDSIAGDHRKPPPPTPT-SFDPFQY---NFSNRDSDASLCSSRPSIASTTRNPS-VP-ISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNYDEVTRGNGLEYEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHK 567
MRPAG RR A +H PPPTP S DP+Q+ RDSD S SSRPS S R+ + VP ISD+S+Q SALRT+N YL+ S FSLKPPLPSAKDI ETLK +L L F K +DEL VLK+L CP+K+N+SAL+APGTPHSWP+LL V+HWLVQI Y+ + EEN MF YA Y YI GDDE +++ D+ F+ +L R+ +EE + L E V+ELE KLEGLK GPS+KEVLE+++ LE+DV KF+ +IEQLDGH+V VQK LEEK++ELE KVEERKRI EENEELK ++EEQG N RDAERMKRELQA+ER+ + EAAR+ WEEK WELDSE G+KFKELE L +ECNQAIR LKLGNGFQY+LNAK STP+EVLG+DYK+ LKP+L S E+ K SM K EE ISLQ E +KIE KR I AL+ ID+VE + L+R ET E++SRC EA+K+ E+V+ E Q M VEKEA E L+TS++K QE AQSEEEV++CA+EL LI+SV+ +KE M S IS M+ D L+T ++ I+K
Sbjct: 1 MRPAGRRR-----AVEH---PPPTPVNSSDPWQFLSTPVPGRDSDVSFTSSRPSTVSMGRSSTAVPNISDRSYQASALRTINAYLASQSLPFSLKPPLPSAKDITETLKYLLHRLGF---RAQKLDDELNQVLKFLRCPLKLNKSALRAPGTPHSWPNLLAVIHWLVQIIKYNGYMENSPTGLEENRMFKYAANSYLSYIGGDDEAVDALDEEFMVELREGRDKMEENVKVLEENVKELEEKLEGLKAGPSQKEVLEQEKAALEKDVMKFHMIIEQLDGHLVEVQKKLEEKDQELEVKVEERKRISEENEELKRKIEEQGINYRDAERMKRELQALERDIEETEAARNGWEEKIWELDSETGRKFKELEGLAMECNQAIRSLKLGNGFQYQLNAKGSTPSEVLGLDYKVILKPMLTSFLEDIKSGSMEKWEELISLQHQSRENVSKIEEKRKQITALELQIDQVEAHMTLMRKETHEYVSRCATEARKMAEEVEIEAQKMSAVEKEAAEYLQTSKIKLQETIAQSEEEVKVCAQELFELINSVAAYKEYMGSKISRMRNDLLETAGAVAGIYK 562
Match: A0A7J7G8B9 (PIPK domain-containing protein {ECO:0000259|PROSITE:PS51455})
HSP 1 Score: 621.313 bits (1601), Expect = 0.000e+0
Identity = 348/579 (60.10%), Postives = 432/579 (74.61%), Query Frame = 0
Query: 1 MRPAGA--RRQKDSIAGDHRKPPPPTPTSFDPFQYN----FSNRDSDASLCSSRPSIASTTRNPSVPISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNY-DEVTRGNGLE--YEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHKSSL 570
MR AG RR KDS A D + PPPPTPT+ DP+Q++ ++RDSDAS CSS R+ SVPI+D+S+QLSALRT+N+YLS HS+ SLKPPLPSAKDI ETLK ++ L+FP NK E++L+ VLK+L CP+K+N+SAL+APGTPHSWP+LL V+HWLVQ+ Y D + + + +E+N MF Y + Y H+I GDD+ ME D+ F+EKL ER VEE + + VRELE KLE L+ PS KE+LE+++ +LEEDVKKF++MIEQL+GHI V+K LEEKEKELEAKV E K+ICEENEELK RV+ QG NARDAERMKRELQAVER+ G+AE AR+ WEEK W+LD+ IG KFKELE+L IECNQAI++LKLGNGFQY LN K STPAEVLGIDYK +KP L S A++ KKSSM KLEE ISLQ+ VE A KIE K+N I ALQ IDEVE QLNLL+ ETQ++ SRC+ EAKK++ DV+A+ +DIVE+EA S+ K QE Q EEE QMCA+EL L+DSVSK+KE M S I EMK +TV +S+++K SL
Sbjct: 1194 MRAAGTGRRRLKDSFAPDRKPPPPPTPTAADPWQFHGGATTTSRDSDASFCSS------INRSASVPITDRSYQLSALRTINSYLSSHSSQISLKPPLPSAKDITETLKFVISRLEFP---SNKLEEDLYVVLKHLNCPIKLNKSALRAPGTPHSWPNLLAVIHWLVQVAMYNDHLNDSSQVRSIFEDNSMFIYTMNSYLHFIRGDDDSMEMLDREFMEKLQYERESVEESLKLVEANVRELEAKLESLRTEPSAKELLEKEKCVLEEDVKKFHSMIEQLNGHITTVEKVLEEKEKELEAKVGENKKICEENEELKKRVDLQGINARDAERMKRELQAVERDIGEAEVARNTWEEKCWDLDATIGHKFKELEALSIECNQAIKRLKLGNGFQYVLNGKGSTPAEVLGIDYKSTVKPALTSFADDIKKSSMAKLEELISLQQQSVETAAKIEQKKNRITALQSRIDEVEAQLNLLKKETQDYTSRCVAEAKKILGDVEADTHKLDIVEREAAVFSEGSEQKLQEAIIQDEEETQMCAQELFQLVDSVSKYKEYMASKILEMKSALSETVESVSDMYKGSL 1763
HSP 2 Score: 578.17 bits (1489), Expect = 0.000e+0
Identity = 337/576 (58.51%), Postives = 416/576 (72.22%), Query Frame = 0
Query: 1 MRPAGA--RRQKDSIAGDHRKPPPPTPTSFDPFQYN----FSNRDSDASLCSSRPSIASTTRNPSVPISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNYDEVTRGNGLEYEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHKSSL 570
MR AG RR KDS A D + PPPPTPT+ DP+Q++ ++RDSDAS CSS R+ SVPI+D+S QLSALRT+N+YLS HS SLKPPLPSAKDI ETLK ++ L+FP NK E++L+ VLK+L CP+K+N+SAL+APGTPHSWP+LL V+HWLVQ+ Y++ + +R F S DD+ ME D+ F+EKL ER VEE + + VRELE KL+ ++ PS KE+LE+++ +L EDVKKF++MIEQL+GHI V K LEEKEKELEAKV E K+ICEENEELK RV+ QG NARDAERMKRELQ VER+ G+AE AR+ WEEK W+LD+ IG KFKELE+L IECNQAI++LKLGNGFQY LN K STPA VLGIDYK +KP L S A+E KKSSM KLEE ISLQ+ VE A KIE K+N I ALQ IDEVE QLNLL+ ETQ++ SRC+ EAKK++ DV+A+ +DIVE+EA S+ K QE Q EEE QMCA+EL L+DSVSK+KE M S I EMK +TV +S+++K SL
Sbjct: 1 MRAAGTGRRRLKDSFAPDRKPPPPPTPTAADPWQFHSGATTTSRDSDASFCSS------INRSASVPITDRSDQLSALRTINSYLSSHSPQISLKPPLPSAKDITETLKFVISRLEFP---SNKLEEDLYVVLKHLNCPIKLNKSALRAPGTPHSWPNLLAVIHWLVQVAMYNDHLNDSS-----------QVRSLFEDNS-DDDSMEMLDREFMEKLQYERESVEESLKLVEANVRELEAKLKSVRTEPSAKELLEKEKSVLVEDVKKFHSMIEQLNGHITTVAKVLEEKEKELEAKVGENKKICEENEELKKRVDLQGINARDAERMKRELQVVERDIGEAEVARNTWEEKCWDLDATIGHKFKELEALSIECNQAIKRLKLGNGFQYVLNGKGSTPAAVLGIDYKSTIKPALTSFADEIKKSSMAKLEELISLQQQSVETAAKIEQKKNRITALQSRIDEVEAQLNLLKKETQDYTSRCVAEAKKILGDVEADTHKLDIVEREAAVFSEGSEQKLQEAIIQDEEETQMCAQELFQLVDSVSKYKEYMASKILEMKSALSETVESVSDMYKGSL 555
Match: F6H969 ((Uncharacterized protein {ECO:0000313|EMBL:CCB48740.1}))
HSP 1 Score: 618.616 bits (1594), Expect = 0.000e+0
Identity = 342/571 (59.89%), Postives = 421/571 (73.73%), Query Frame = 0
Query: 1 MRPAGARRQKDSIAGDHRKPPPPTPTSFDPFQYNFSNRDSDASLCSSRPSIASTTRNPSV-PISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNYDEVTRGNGLEYEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHKSSL 570
M+ G RR KDSI +PPPP S D + FS RDSDAS SSRPS R+ + ++D+S+QLSA+RT+N++L+ HS+ SLKPPLPSAKDI ETLK ++ LDFP + K ED+L +LK+L CP+K+N+SALKAPGTPH+WP LLGVMHWLVQI Y++ N L+ +N F YAL Y HYI GDD+ ME+ D+ F+ KL ER+ V EG + L + V E EG+LE L++GPS KEV+E+ R +LEEDVKKF+ +I + G I +V+K LEEKEKEL KVEE RICEENEELK RVE Q FNARDAERMKRELQAVER+ +AE AR+ WEEKSW+LD+ IG KFKELE+L IECNQA+R+LKLGNG QY LNAK S+P EVLGIDYK LKP L S A++ KSSM KLEE ISLQ+ VE A KIEAKRN +AALQ DEVE QLN L+ ETQ + SRC MEAKKLVEDV+ E N+DIVE+E ++L TS++K QE Q+EEE+Q+CA EL AL+DSVSK+KE M S ISEMK + +T +S+ +K SL
Sbjct: 1 MKATGRRRPKDSI-----RPPPPPAPSVDHHR-QFS-RDSDASFASSRPSSLGINRSSAGDALTDRSYQLSAIRTINSFLASHSSPLSLKPPLPSAKDISETLKFLISQLDFPTT---KLEDDLPILLKHLNCPIKLNKSALKAPGTPHAWPPLLGVMHWLVQIALYNDHLVSN-LQCFDN-TFVYALDSYLHYIRGDDDGMEAVDREFMGKLEKERDAVAEGVKALEKEVAEREGRLEELRSGPSAKEVVEKVRGVLEEDVKKFHAIIAEFSGRIASVEKILEEKEKELGVKVEENNRICEENEELKKRVELQTFNARDAERMKRELQAVERDITEAEVARNGWEEKSWDLDTTIGHKFKELEALSIECNQALRRLKLGNGLQYVLNAKGSSPTEVLGIDYKSALKPALDSFADDINKSSMSKLEELISLQQQSVENAAKIEAKRNRLAALQSRSDEVEAQLNFLKKETQNYTSRCAMEAKKLVEDVEIETHNVDIVEREVADVLETSKLKLQEAIKQNEEEIQICAWELYALVDSVSKYKEHMASKISEMKSNLSETAGAVSDSYKGSL 559
Match: A0A2R6RGR0 ((Kinetochore protein {ECO:0000313|EMBL:PSS29178.1}))
HSP 1 Score: 614.764 bits (1584), Expect = 0.000e+0
Identity = 338/577 (58.58%), Postives = 426/577 (73.83%), Query Frame = 0
Query: 1 MRPAGARRQ--KDSIAGDHRKPPPPTPTSFDPFQYNFSNRDSDASLCSSRP-SIASTTRNPSVPISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNYDE----VTRGNGLEYEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHKSSL 570
MR AGA R+ KDS A ++PPP + D +Q F++RDSD SLCSSRP S T R+ +VPI+D+ +QLSA+RT+N YL+ HS+ S+KP LPSAKD+ ETLK +L L+FP K E++ + V+K L CP+K+N+SAL+APG PH+WP+LLGV+HWLVQI Y++ R N E+ +F YA+ Y H+ISG+D+ +E D +E+L E+ +EE L E V+ LEGK E L+ PS +E LEEQR +LEEDVKKF+ +IEQL+GHIV V+K LEEKEKELE KVEE++RICEENEELK R+E QG NARDA+RMKRELQAVER+ GD+E AR+AWEEKSW+LD++IG K K+LE+ IECNQ I++LKLGN FQ++LNAK STPAEVLG+DYK LKP L S ++ KKSSM KLEE I+LQ+ VE A KIEAKRN IAALQ IDE+E Q NLL ETQE+ SRC+ EAKK+ ED++AE + IVE+EA E LR ++K QE Q EEE QMCAREL ALIDSVSK+KE MTS ISEMK TV +S+++K SL
Sbjct: 1 MRAAGAGRRHPKDSFA---QRPPPTPTPTADTWQ--FTSRDSDVSLCSSRPASSIGTNRSAAVPITDRGYQLSAIRTINAYLASHSSQISIKPTLPSAKDVTETLKFVLNGLEFP---PIKLEEDFYVVIKQLNCPIKLNKSALRAPGNPHTWPNLLGVIHWLVQIAMYNDHLNDSPRVNS--SFEDTLFRYAMESYLHFISGNDDSVEMLDSEVVERLQQEKKSIEERVEALKESVKNLEGKKEDLRTKPSPREQLEEQRSVLEEDVKKFHAIIEQLNGHIVTVEKVLEEKEKELEVKVEEKRRICEENEELKKRIEMQGINARDADRMKRELQAVERDIGDSEVARNAWEEKSWDLDAKIGYKLKDLEAFSIECNQGIKRLKLGNDFQFKLNAKGSTPAEVLGMDYKSTLKPALTSFDDDIKKSSMAKLEEMIALQQQSVENAAKIEAKRNRIAALQSRIDEMEAQSNLLMKETQEYTSRCIAEAKKMAEDIEAEAHKLGIVEREAAEFLRNYKLKLQEAIVQEEEETQMCARELYALIDSVSKYKEYMTSKISEMKSALSDTVGSVSDMYKGSL 567
Match: A0A7J0ESB6 ((Uncharacterized protein {ECO:0000313|EMBL:GFY89323.1}))
HSP 1 Score: 610.912 bits (1574), Expect = 0.000e+0
Identity = 343/578 (59.34%), Postives = 429/578 (74.22%), Query Frame = 0
Query: 1 MRPAGA--RRQKDSIAGDHRKPPPPTPTSFDPFQYNFSNRDSDASLCSSRPSIA--STTRNPSVPISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNYDE----VTRGNGLEYEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHKSSL 570
MR AGA RR KDS A + PPPTPTS D +Q F++RDSDASLCSSRPS + R+ +VPI+D+ +QLSA+RT+N YLS HS+ S+KP LPSAKD+ ETLK +L L+FP NK E++ + V+K L CP+K+N+SAL+APG PH+WP+LLGV+HWLVQI Y++ + N + E+ +F YA+ Y +ISG+D+ +E D +EKL E+ +EE L E V+ LEGK E L+ PS +E LEEQR +LEEDVKKF+ +IEQL+GHIV V+K LEEKEKELE KVEE++RICEENEELK R+E QG NARDA+RMKRELQAVER+ GD+E AR+AWEEKSW+LD++IG K K+LE+ IECNQ I++LKLGN FQ++LNAK STPAEVLG+DYK LKP L S ++ KKSSM KLEE I+LQ+ VE A KIEAKRN IAALQ IDE+E Q NLL ETQE+ SRC+ EAK + ED++AE + IVE+EA E LR ++K QE Q EEE QMCAREL ALIDSVSK+KE MTS ISEMK TV +S+++K SL
Sbjct: 1 MRAAGAGRRRPKDSFA----QRPPPTPTS-DTWQ--FTSRDSDASLCSSRPSSSSIGINRSAAVPITDRGYQLSAIRTINAYLSSHSSQISIKPTLPSAKDVTETLKFVLNRLEFP---PNKLEEDFYVVIKQLNCPIKLNKSALRAPGNPHTWPNLLGVIHWLVQIAMYNDHLNDSPQVNSIF--EDTLFSYAMESYLLFISGNDDSVEMLDSEVVEKLQQEKKSIEERVEALKESVKNLEGKKEDLRTKPSPREQLEEQRSVLEEDVKKFHAIIEQLNGHIVTVEKVLEEKEKELEVKVEEKRRICEENEELKKRIEMQGINARDADRMKRELQAVERDIGDSEVARNAWEEKSWDLDAKIGYKLKDLEAFSIECNQGIKRLKLGNDFQFKLNAKGSTPAEVLGMDYKSTLKPALTSFDDDIKKSSMAKLEEMIALQQQSVENAAKIEAKRNRIAALQSRIDEMEAQSNLLMKETQEYTSRCIAEAKNMAEDIEAEAHKLGIVEREAAEFLRNYKLKLQEAIVQEEEETQMCARELYALIDSVSKYKEYMTSKISEMKSALSDTVGSVSDMYKGSL 566
Match: A0A2G2W8W0 ((Uncharacterized protein {ECO:0000313|EMBL:PHT41629.1}))
HSP 1 Score: 610.142 bits (1572), Expect = 0.000e+0
Identity = 318/574 (55.40%), Postives = 415/574 (72.30%), Query Frame = 0
Query: 1 MRPAGARRQKDSIAGDHRKPPPPTPTSFDPFQY-NFSNRDSDASLCSSRPSIAS-TTRNPSVPISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNYDE--VTRGNGLEYEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHKSSL 570
MR AG RR+ +S+ D R+ PPPTP + DP Q+ + RDSDAS SSRPS A +R+ ++PISD+S+Q SA+RT+N YLS H+ +LK PLPSA+DI ETLK IL F NK ED L +LK L CPVK+N+SAL+APGTPHSWPSLL V+HWLVQ+ +D+ ++ G L EN Y + Y Y G DE ++ D+ F+ +L + + E L V+ E KLE +K GPSE+EVLE ++ LEEDVKKF+ +IEQL+GHIV ++K ++EKEK LEAKV E++ IC ENEELK RVEEQG N+RDA+RMKREL A+ER+ GD E R WEEK+W+LDS IG FK+LE LMIECNQ+IR+LKLGN FQY+LNA+ S+PAEVLGIDYK KLKP LAS +E KKSSM K+EE ISLQ+ VE A K+E+K+N +AALQ HID +E QL+L++ E Q+ S C EA+++VE+V+ E + +D VE+EA E L+ S+ K QE AQ+EEEVQ+CAREL A++DSVSK+KE +TS ++ MK D +TV I+++HK+ L
Sbjct: 1 MRGAG-RRRTNSVVPD-RRHPPPTPIN-DPRQFLSTGGRDSDASFASSRPSSAGINSRSSAIPISDRSYQNSAMRTINAYLSSHNLP-TLKAPLPSARDITETLKFILSRFGFSTVESNKLEDNLQVLLKSLNCPVKLNKSALRAPGTPHSWPSLLAVIHWLVQLCKFDDHRLSSGQPL-APENKELSYTIESYLQYFRGKDEEVDELDRQFMIELEQHKEQLIENVNVLEGNVKAQEEKLEAMKTGPSEREVLENEKSALEEDVKKFHAIIEQLEGHIVTLEKMVDEKEKGLEAKVVEKESICAENEELKKRVEEQGINSRDADRMKRELHALERDIGDIENQRIEWEEKAWDLDSAIGSMFKKLEELMIECNQSIRRLKLGNEFQYQLNAQGSSPAEVLGIDYKKKLKPTLASFEDEMKKSSMGKMEELISLQQQSVERATKVESKKNRLAALQAHIDNLEAQLDLVKKERQDFTSSCATEARRIVEEVETETRKLDQVEREAAEFLKASKAKLQETIAQTEEEVQLCARELFAVVDSVSKYKEYITSKVAIMKNDLAETVGTIADMHKAGL 569
Match: A0A2R6Q6G8 ((Kinetochore protein {ECO:0000313|EMBL:PSS02851.1}))
HSP 1 Score: 610.142 bits (1572), Expect = 0.000e+0
Identity = 336/577 (58.23%), Postives = 426/577 (73.83%), Query Frame = 0
Query: 1 MRPAGARRQ--KDSIAGDHRKPPPPTPTSFDPFQYNFSNRDSDASLCSSRP-SIASTTRNPSVPISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNYDE----VTRGNGLEYEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHKSSL 570
MR AGA R+ KDS A ++PPP + D +Q F++RDSD SLCSSRP S T R+ +VPI+D+ +QLSA+RT+N YL+ HS+ S+KP LPSAKD+ ETLK +L L+FP K E++ + V+K L CP+K+N+SAL+APG PH+WP+LLGV+HWLVQI Y++ R N E+ +F YA+ Y H+ISG+D+ +E D +E+L E+ +EE L E V+ LEGK E L+ PS +E LEEQR +LEEDVKKF+ +IEQL+GHIV V+K LEEKEKELEAKV+E++RICEENEELK R+E QG NARDAERMKRELQAVER+ GD+E AR+AWEEKSW+L++ IG K K+LE+L IECNQ I++LKLGN FQY+LNA+ STPAEVLG+DYK LKPVL S ++ K SSM KLEE I+LQ+ VE A KIEAKRNHIAALQ IDEVE Q NLL ET+E+ SRC+ EAKK+ ED++A+ + IVE+EA E LR ++K QE Q EE QMCAREL ALIDSVSK+KE M S I EMK +TV +S+++K SL
Sbjct: 1 MRAAGAGRRHPKDSFA---QRPPPTPTPTADTWQ--FTSRDSDVSLCSSRPASSIGTNRSAAVPITDRGYQLSAIRTINAYLASHSSQISIKPTLPSAKDVTETLKFVLNGLEFP---PIKLEEDFYVVIKQLNCPIKLNKSALRAPGNPHTWPNLLGVIHWLVQIAMYNDHLNDSPRVNS--SFEDTLFRYAMESYLHFISGNDDSVEMLDSEVVERLQQEKKSIEERVEALKESVKNLEGKKEDLRTKPSPREQLEEQRSVLEEDVKKFHAIIEQLNGHIVTVEKVLEEKEKELEAKVKEKRRICEENEELKKRIEMQGINARDAERMKRELQAVERDIGDSEVARNAWEEKSWDLNATIGHKLKDLEALSIECNQGIKRLKLGNDFQYKLNAEGSTPAEVLGMDYKSTLKPVLTSFGDDIKNSSMEKLEEMIALQQQSVENAAKIEAKRNHIAALQSRIDEVETQSNLLMKETREYTSRCIAEAKKMAEDIEAQAHELHIVEREAEEFLRNYKLKLQEAIVQEEEATQMCARELYALIDSVSKYKEYMASKILEMKRALSETVGSVSDLYKGSL 567
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7CC67 | E-Value: 0.000e+0, PID: 61.35 | (Putative kinetochore protein ndc80-like {ECO:0000... [more] |
| A0A5J5B1F0 | E-Value: 0.000e+0, PID: 61.14 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8536... [more] |
| A0A2G9FZZ3 | E-Value: 0.000e+0, PID: 58.14 | (Centromere-associated protein HEC1 {ECO:0000313|E... [more] |
| A0A2Z7AIK1 | E-Value: 0.000e+0, PID: 58.29 | (Uncharacterized protein {ECO:0000313|EMBL:KZV2117... [more] |
| A0A7J7G8B9 | E-Value: 0.000e+0, PID: 60.10 | PIPK domain-containing protein {ECO:0000259|PROSIT... [more] |
| F6H969 | E-Value: 0.000e+0, PID: 59.89 | (Uncharacterized protein {ECO:0000313|EMBL:CCB4874... [more] |
| A0A2R6RGR0 | E-Value: 0.000e+0, PID: 58.58 | (Kinetochore protein {ECO:0000313|EMBL:PSS29178.1}... [more] |
| A0A7J0ESB6 | E-Value: 0.000e+0, PID: 59.34 | (Uncharacterized protein {ECO:0000313|EMBL:GFY8932... [more] |
| A0A2G2W8W0 | E-Value: 0.000e+0, PID: 55.40 | (Uncharacterized protein {ECO:0000313|EMBL:PHT4162... [more] |
| A0A2R6Q6G8 | E-Value: 0.000e+0, PID: 58.23 | (Kinetochore protein {ECO:0000313|EMBL:PSS02851.1}... [more] |
Pages
back to top| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |
