DCAR_029239

Resource Type: 
Polypeptide
Name: 
DCAR_029239
Identifier: 
DCAR_029239.mRNA-protein
Sequence: 
MRPAGARRQKDSIAGDHRKPPPPTPTSFDPFQYNFSNRDSDASLCSSRPS
IASTTRNPSVPISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIE
TLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSW
PSLLGVMHWLVQIGNYDEVTRGNGLEYEENGMFDYALRGYFHYISGDDER
MESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVL
EEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRIC
EENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWE
LDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGID
YKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAA
LQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKE
ATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISE
MKEDYLKTVSVISEIHKSSL*
Sequence Length: 
571
Sequence Checksum: 
15649582da9844b4bc9effc255da7a5b
View location in JBrowse: 
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_029239, derives from mRNA, DCAR_029239.
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Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_029239 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_029239 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7CC67 ((Putative kinetochore protein ndc80-like {ECO:0000313|EMBL:MPA77666.1}) (Fragment))

HSP 1 Score: 669.848 bits (1727), Expect = 0.000e+0
Identity = 354/577 (61.35%), Postives = 455/577 (78.86%), Query Frame = 0
 
Query:    1 MRPAGARRQKDSIAGDHRKPPPPTPTSF-DPFQY--NFSNRDSDASLCSSRPSIASTTRN----PSVPISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNYDEVTRGNGLEYEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHKSSL 570
            MR AG RR K+S A D R  PPPTPT+  DP+Q+    + RDSDAS CSSRPS +S   N     SVP++D+++QLSA+R++N YLS HS+   LKPPLPSAKDI +TL+ +L  LDFP    NK E++L+ VLK+L CP+K+N+SAL+APGTPHSWP+LL V+HWLVQ+  Y++  +   + +E+N MF YA   Y HYI GDD+ +++ D+ F+EKL  ER+ +EE  + L   V+ELE K+EGLK+GPS +E+LE++R +LEEDVKKF+ MIEQL+GHI+ V+K LEEKEKELEAK+ E K ICEENEELK +V  QG NAR+AERMKRELQAVER  G+AE AR+AWE+KSW+LD+ IG+KFKELE+L IECNQAI++LKLGNGFQYELNAK STPA+VLGIDYK  LKP+LASLA++ KKSSM+KLEE +SLQ+  VE+A +IEAKRN I ALQ HIDE E+Q+NLL  ETQ+++S+C  EAK++V++V+AE  N+D+VE+EA E L+ SQ+K QE   QSEEEVQ+C+REL AL+DSVSK KE M+S ISEMK D  +TV  +S++HK SL
Sbjct:    8 MRAAGRRRPKESFAQDRR--PPPTPTAAADPWQFMGGATGRDSDASFCSSRPSSSSIGINRSAAASVPVTDRAYQLSAIRSINAYLSSHSSQTFLKPPLPSAKDITDTLRFVLTRLDFP---PNKLEEDLYTVLKHLNCPIKLNKSALRAPGTPHSWPNLLAVIHWLVQVAMYNDHLQTRSI-FEDNSMFIYARNSYLHYIRGDDDEVDALDREFMEKLQQERDSMEENVKLLEGNVKELEAKVEGLKSGPSPRELLEKERSVLEEDVKKFHAMIEQLNGHIMAVEKVLEEKEKELEAKLVENKSICEENEELKKQVGLQGINAREAERMKRELQAVEREIGEAEVARNAWEDKSWDLDATIGRKFKELEALSIECNQAIKRLKLGNGFQYELNAKGSTPAQVLGIDYKSTLKPMLASLADDIKKSSMLKLEELVSLQQQTVESAARIEAKRNRITALQSHIDEEESQMNLLMRETQDYVSKCATEAKRMVQEVEAEAHNLDVVEREAAEFLKASQVKLQEAILQSEEEVQLCSRELFALVDSVSKHKEYMSSKISEMKSDLSETVGAVSDVHKGSL 578    
BLAST of DCAR_029239 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B1F0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8536519.1}))

HSP 1 Score: 665.226 bits (1715), Expect = 0.000e+0
Identity = 354/579 (61.14%), Postives = 449/579 (77.55%), Query Frame = 0
 
Query:    1 MRPAGARRQKDSIAGDHRKPPPPTPTSFDPFQY--NFSNRDSDASLCSSRPSIASTTRN----PSVPISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNY-DEVTRGNGLE--YEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHKSSL 570
            MR AG RR K+S A D RKPPP    + DP+Q     + RDSDAS CSSRPS +S   N     SVP++D+++QLSA+R++N+YLS HS+  SLKPPLPSAKDI +TL+ +L  LDF     NK E++L+ VLK L CP+K+N+SAL+APGTPHSWP+LL V+HWLVQI  Y D +   +     +E+N MF Y+L  Y HYI GDD+ +++ D+ F+EKL  ER+ +EE A+ L + V+ELE KLEGLK+GPS +E+LE+++ +LEED+KKF+ MIEQL+GHI+ V+K LEEKEKELEAK  E KRICEENEELK RV  QG N+RDAERMKRELQAVER+ GDAE AR+AWEEKSW+LD+ +G KFKELE+L I+CNQAIR+LKLGNGFQYELNAK STPA+VLG+DYK  LKPVLAS A++ KKSSM+KLEE ISLQ+  VE A KIEAKRN +  LQ HI+E E+QLNLL+ ETQ++ S+C  EA+++V DV+AE  N+DIVE EA + L+TSQ+K QE   QSEEE+Q+C+REL AL+DSVSK+KE   S ISEMK +  +TV  +S++HK SL
Sbjct:    1 MRAAGRRRPKESFAQD-RKPPPTPNAAADPWQLMGGATGRDSDASFCSSRPSSSSIGINRSAAASVPVTDRAYQLSAIRSINSYLSSHSSQTSLKPPLPSAKDITDTLRFVLARLDF---APNKLEEDLYTVLKQLNCPIKLNKSALRAPGTPHSWPNLLAVIHWLVQIAMYNDHLINSSQTRSIFEDNSMFIYSLNSYLHYIRGDDDSVDALDREFMEKLQQERDSMEENAKLLEDNVKELEAKLEGLKSGPSPRELLEKEKSVLEEDIKKFHAMIEQLNGHIMTVEKVLEEKEKELEAKFGENKRICEENEELKKRVGLQGINSRDAERMKRELQAVERDIGDAEVARNAWEEKSWDLDTTMGHKFKELEALSIDCNQAIRRLKLGNGFQYELNAKGSTPAQVLGLDYKATLKPVLASFADDIKKSSMMKLEELISLQQQTVENAAKIEAKRNRLMELQSHIEEEESQLNLLKKETQDYTSKCATEARRMVRDVEAEAHNLDIVEGEAADFLKTSQVKLQEAILQSEEEIQLCSRELFALVDSVSKYKEYTASKISEMKSNLSETVGAVSDVHKGSL 575    
BLAST of DCAR_029239 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9FZZ3 ((Centromere-associated protein HEC1 {ECO:0000313|EMBL:PIM98610.1}))

HSP 1 Score: 638.262 bits (1645), Expect = 0.000e+0
Identity = 332/571 (58.14%), Postives = 419/571 (73.38%), Query Frame = 0
 
Query:    1 MRPAGARRQKDSIAGDHRKPPPPTPTSFDPFQY---NFSNRDSDASLCSSRPSIASTTRNPSVP-ISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNYDEVTRGNGLEYEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHK 567
            MR AG RR  +S+A D R PPP    S DP+Q+       RDSDAS CSSRPSIAS  R  +VP +SD+S Q SALRT+N+YL+  S  FSLK PLPSAKDIIETLK +L  L F      K +++L   LK+L CP+K+N+SAL+APGTPHSWP+LL V+HWLVQI  Y++        +E + MF Y +  Y  YI GDDE M++ D+  + ++   R+ VEE  + L E V+ELE KLEGLK  PS+KEVLE+++ +LE+DV KF+ +IEQL GH+V VQK LEEK++ LEAKVEERKR CEENEELK ++EEQG N RDAERMKRE+QAVER+  + EAAR+ WEEK WELDSEIG+KFKELE L++ECNQAIR+LKLGNGFQY+LNAK STPAEVLG+DYK  LKP L S AE+  ++SM KLEE ISL++   E A K+E KRN I  LQ HIDEVE QLN++R ETQE+ SRC  EA+++ E+V  E Q M  VEKEA E L+TS+ + QE   Q+EEEV++CA+EL  LI+SVS +KE M S I+ M+ D L+T   +++I+K
Sbjct:    1 MRAAGRRRATESVAPDRRPPPPTPTNSADPWQFLATPVPGRDSDASFCSSRPSIASAGRPSAVPNVSDRSHQASALRTINSYLASQSVPFSLKHPLPSAKDIIETLKFLLNRLGF---ASKKIDEDLSHALKFLKCPLKLNKSALRAPGTPHSWPNLLAVIHWLVQIIKYNDYMMNTLPTFESDKMFMYTINSYLLYIRGDDEAMDALDEECIREMRGWRDKVEENVKALEENVKELESKLEGLKGVPSQKEVLEQEKAVLEKDVTKFHVIIEQLKGHLVEVQKKLEEKDRALEAKVEERKRCCEENEELKKKIEEQGINLRDAERMKREMQAVERDIEETEAARNGWEEKIWELDSEIGQKFKELERLVMECNQAIRRLKLGNGFQYQLNAKGSTPAEVLGLDYKSILKPALVSFAEDITRNSMGKLEELISLRQQSGENAAKLEEKRNRIEVLQSHIDEVEAQLNIMRKETQEYASRCAAEARRMAEEVDMEAQKMSAVEKEAAEFLKTSKAELQETVMQTEEEVKLCAQELFDLINSVSTYKEYMGSKIARMRSDLLETAGAVADIYK 568    
BLAST of DCAR_029239 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2Z7AIK1 ((Uncharacterized protein {ECO:0000313|EMBL:KZV21178.1}))

HSP 1 Score: 634.024 bits (1634), Expect = 0.000e+0
Identity = 334/573 (58.29%), Postives = 413/573 (72.08%), Query Frame = 0
 
Query:    1 MRPAGARRQKDSIAGDHRKPPPPTPT-SFDPFQY---NFSNRDSDASLCSSRPSIASTTRNPS-VP-ISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNYDEVTRGNGLEYEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHK 567
            MRPAG RR     A +H   PPPTP  S DP+Q+       RDSD S  SSRPS  S  R+ + VP ISD+S+Q SALRT+N YL+  S  FSLKPPLPSAKDI ETLK +L  L F      K +DEL  VLK+L CP+K+N+SAL+APGTPHSWP+LL V+HWLVQI  Y+     +    EEN MF YA   Y  YI GDDE +++ D+ F+ +L   R+ +EE  + L E V+ELE KLEGLK GPS+KEVLE+++  LE+DV KF+ +IEQLDGH+V VQK LEEK++ELE KVEERKRI EENEELK ++EEQG N RDAERMKRELQA+ER+  + EAAR+ WEEK WELDSE G+KFKELE L +ECNQAIR LKLGNGFQY+LNAK STP+EVLG+DYK+ LKP+L S  E+ K  SM K EE ISLQ    E  +KIE KR  I AL+  ID+VE  + L+R ET E++SRC  EA+K+ E+V+ E Q M  VEKEA E L+TS++K QE  AQSEEEV++CA+EL  LI+SV+ +KE M S IS M+ D L+T   ++ I+K
Sbjct:    1 MRPAGRRR-----AVEH---PPPTPVNSSDPWQFLSTPVPGRDSDVSFTSSRPSTVSMGRSSTAVPNISDRSYQASALRTINAYLASQSLPFSLKPPLPSAKDITETLKYLLHRLGF---RAQKLDDELNQVLKFLRCPLKLNKSALRAPGTPHSWPNLLAVIHWLVQIIKYNGYMENSPTGLEENRMFKYAANSYLSYIGGDDEAVDALDEEFMVELREGRDKMEENVKVLEENVKELEEKLEGLKAGPSQKEVLEQEKAALEKDVMKFHMIIEQLDGHLVEVQKKLEEKDQELEVKVEERKRISEENEELKRKIEEQGINYRDAERMKRELQALERDIEETEAARNGWEEKIWELDSETGRKFKELEGLAMECNQAIRSLKLGNGFQYQLNAKGSTPSEVLGLDYKVILKPMLTSFLEDIKSGSMEKWEELISLQHQSRENVSKIEEKRKQITALELQIDQVEAHMTLMRKETHEYVSRCATEARKMAEEVEIEAQKMSAVEKEAAEYLQTSKIKLQETIAQSEEEVKVCAQELFELINSVAAYKEYMGSKISRMRNDLLETAGAVAGIYK 562    
BLAST of DCAR_029239 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7G8B9 (PIPK domain-containing protein {ECO:0000259|PROSITE:PS51455})

HSP 1 Score: 621.313 bits (1601), Expect = 0.000e+0
Identity = 348/579 (60.10%), Postives = 432/579 (74.61%), Query Frame = 0
 
Query:    1 MRPAGA--RRQKDSIAGDHRKPPPPTPTSFDPFQYN----FSNRDSDASLCSSRPSIASTTRNPSVPISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNY-DEVTRGNGLE--YEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHKSSL 570
            MR AG   RR KDS A D + PPPPTPT+ DP+Q++     ++RDSDAS CSS        R+ SVPI+D+S+QLSALRT+N+YLS HS+  SLKPPLPSAKDI ETLK ++  L+FP    NK E++L+ VLK+L CP+K+N+SAL+APGTPHSWP+LL V+HWLVQ+  Y D +   + +   +E+N MF Y +  Y H+I GDD+ ME  D+ F+EKL  ER  VEE  + +   VRELE KLE L+  PS KE+LE+++ +LEEDVKKF++MIEQL+GHI  V+K LEEKEKELEAKV E K+ICEENEELK RV+ QG NARDAERMKRELQAVER+ G+AE AR+ WEEK W+LD+ IG KFKELE+L IECNQAI++LKLGNGFQY LN K STPAEVLGIDYK  +KP L S A++ KKSSM KLEE ISLQ+  VE A KIE K+N I ALQ  IDEVE QLNLL+ ETQ++ SRC+ EAKK++ DV+A+   +DIVE+EA      S+ K QE   Q EEE QMCA+EL  L+DSVSK+KE M S I EMK    +TV  +S+++K SL
Sbjct: 1194 MRAAGTGRRRLKDSFAPDRKPPPPPTPTAADPWQFHGGATTTSRDSDASFCSS------INRSASVPITDRSYQLSALRTINSYLSSHSSQISLKPPLPSAKDITETLKFVISRLEFP---SNKLEEDLYVVLKHLNCPIKLNKSALRAPGTPHSWPNLLAVIHWLVQVAMYNDHLNDSSQVRSIFEDNSMFIYTMNSYLHFIRGDDDSMEMLDREFMEKLQYERESVEESLKLVEANVRELEAKLESLRTEPSAKELLEKEKCVLEEDVKKFHSMIEQLNGHITTVEKVLEEKEKELEAKVGENKKICEENEELKKRVDLQGINARDAERMKRELQAVERDIGEAEVARNTWEEKCWDLDATIGHKFKELEALSIECNQAIKRLKLGNGFQYVLNGKGSTPAEVLGIDYKSTVKPALTSFADDIKKSSMAKLEELISLQQQSVETAAKIEQKKNRITALQSRIDEVEAQLNLLKKETQDYTSRCVAEAKKILGDVEADTHKLDIVEREAAVFSEGSEQKLQEAIIQDEEETQMCAQELFQLVDSVSKYKEYMASKILEMKSALSETVESVSDMYKGSL 1763    

HSP 2 Score: 578.17 bits (1489), Expect = 0.000e+0
Identity = 337/576 (58.51%), Postives = 416/576 (72.22%), Query Frame = 0
 
Query:    1 MRPAGA--RRQKDSIAGDHRKPPPPTPTSFDPFQYN----FSNRDSDASLCSSRPSIASTTRNPSVPISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNYDEVTRGNGLEYEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHKSSL 570
            MR AG   RR KDS A D + PPPPTPT+ DP+Q++     ++RDSDAS CSS        R+ SVPI+D+S QLSALRT+N+YLS HS   SLKPPLPSAKDI ETLK ++  L+FP    NK E++L+ VLK+L CP+K+N+SAL+APGTPHSWP+LL V+HWLVQ+  Y++    +             +R  F   S DD+ ME  D+ F+EKL  ER  VEE  + +   VRELE KL+ ++  PS KE+LE+++ +L EDVKKF++MIEQL+GHI  V K LEEKEKELEAKV E K+ICEENEELK RV+ QG NARDAERMKRELQ VER+ G+AE AR+ WEEK W+LD+ IG KFKELE+L IECNQAI++LKLGNGFQY LN K STPA VLGIDYK  +KP L S A+E KKSSM KLEE ISLQ+  VE A KIE K+N I ALQ  IDEVE QLNLL+ ETQ++ SRC+ EAKK++ DV+A+   +DIVE+EA      S+ K QE   Q EEE QMCA+EL  L+DSVSK+KE M S I EMK    +TV  +S+++K SL
Sbjct:    1 MRAAGTGRRRLKDSFAPDRKPPPPPTPTAADPWQFHSGATTTSRDSDASFCSS------INRSASVPITDRSDQLSALRTINSYLSSHSPQISLKPPLPSAKDITETLKFVISRLEFP---SNKLEEDLYVVLKHLNCPIKLNKSALRAPGTPHSWPNLLAVIHWLVQVAMYNDHLNDSS-----------QVRSLFEDNS-DDDSMEMLDREFMEKLQYERESVEESLKLVEANVRELEAKLKSVRTEPSAKELLEKEKSVLVEDVKKFHSMIEQLNGHITTVAKVLEEKEKELEAKVGENKKICEENEELKKRVDLQGINARDAERMKRELQVVERDIGEAEVARNTWEEKCWDLDATIGHKFKELEALSIECNQAIKRLKLGNGFQYVLNGKGSTPAAVLGIDYKSTIKPALTSFADEIKKSSMAKLEELISLQQQSVETAAKIEQKKNRITALQSRIDEVEAQLNLLKKETQDYTSRCVAEAKKILGDVEADTHKLDIVEREAAVFSEGSEQKLQEAIIQDEEETQMCAQELFQLVDSVSKYKEYMASKILEMKSALSETVESVSDMYKGSL 555    
BLAST of DCAR_029239 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6H969 ((Uncharacterized protein {ECO:0000313|EMBL:CCB48740.1}))

HSP 1 Score: 618.616 bits (1594), Expect = 0.000e+0
Identity = 342/571 (59.89%), Postives = 421/571 (73.73%), Query Frame = 0
 
Query:    1 MRPAGARRQKDSIAGDHRKPPPPTPTSFDPFQYNFSNRDSDASLCSSRPSIASTTRNPSV-PISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNYDEVTRGNGLEYEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHKSSL 570
            M+  G RR KDSI     +PPPP   S D  +  FS RDSDAS  SSRPS     R+ +   ++D+S+QLSA+RT+N++L+ HS+  SLKPPLPSAKDI ETLK ++  LDFP +   K ED+L  +LK+L CP+K+N+SALKAPGTPH+WP LLGVMHWLVQI  Y++    N L+  +N  F YAL  Y HYI GDD+ ME+ D+ F+ KL  ER+ V EG + L + V E EG+LE L++GPS KEV+E+ R +LEEDVKKF+ +I +  G I +V+K LEEKEKEL  KVEE  RICEENEELK RVE Q FNARDAERMKRELQAVER+  +AE AR+ WEEKSW+LD+ IG KFKELE+L IECNQA+R+LKLGNG QY LNAK S+P EVLGIDYK  LKP L S A++  KSSM KLEE ISLQ+  VE A KIEAKRN +AALQ   DEVE QLN L+ ETQ + SRC MEAKKLVEDV+ E  N+DIVE+E  ++L TS++K QE   Q+EEE+Q+CA EL AL+DSVSK+KE M S ISEMK +  +T   +S+ +K SL
Sbjct:    1 MKATGRRRPKDSI-----RPPPPPAPSVDHHR-QFS-RDSDASFASSRPSSLGINRSSAGDALTDRSYQLSAIRTINSFLASHSSPLSLKPPLPSAKDISETLKFLISQLDFPTT---KLEDDLPILLKHLNCPIKLNKSALKAPGTPHAWPPLLGVMHWLVQIALYNDHLVSN-LQCFDN-TFVYALDSYLHYIRGDDDGMEAVDREFMGKLEKERDAVAEGVKALEKEVAEREGRLEELRSGPSAKEVVEKVRGVLEEDVKKFHAIIAEFSGRIASVEKILEEKEKELGVKVEENNRICEENEELKKRVELQTFNARDAERMKRELQAVERDITEAEVARNGWEEKSWDLDTTIGHKFKELEALSIECNQALRRLKLGNGLQYVLNAKGSSPTEVLGIDYKSALKPALDSFADDINKSSMSKLEELISLQQQSVENAAKIEAKRNRLAALQSRSDEVEAQLNFLKKETQNYTSRCAMEAKKLVEDVEIETHNVDIVEREVADVLETSKLKLQEAIKQNEEEIQICAWELYALVDSVSKYKEHMASKISEMKSNLSETAGAVSDSYKGSL 559    
BLAST of DCAR_029239 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RGR0 ((Kinetochore protein {ECO:0000313|EMBL:PSS29178.1}))

HSP 1 Score: 614.764 bits (1584), Expect = 0.000e+0
Identity = 338/577 (58.58%), Postives = 426/577 (73.83%), Query Frame = 0
 
Query:    1 MRPAGARRQ--KDSIAGDHRKPPPPTPTSFDPFQYNFSNRDSDASLCSSRP-SIASTTRNPSVPISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNYDE----VTRGNGLEYEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHKSSL 570
            MR AGA R+  KDS A   ++PPP    + D +Q  F++RDSD SLCSSRP S   T R+ +VPI+D+ +QLSA+RT+N YL+ HS+  S+KP LPSAKD+ ETLK +L  L+FP     K E++ + V+K L CP+K+N+SAL+APG PH+WP+LLGV+HWLVQI  Y++      R N     E+ +F YA+  Y H+ISG+D+ +E  D   +E+L  E+  +EE    L E V+ LEGK E L+  PS +E LEEQR +LEEDVKKF+ +IEQL+GHIV V+K LEEKEKELE KVEE++RICEENEELK R+E QG NARDA+RMKRELQAVER+ GD+E AR+AWEEKSW+LD++IG K K+LE+  IECNQ I++LKLGN FQ++LNAK STPAEVLG+DYK  LKP L S  ++ KKSSM KLEE I+LQ+  VE A KIEAKRN IAALQ  IDE+E Q NLL  ETQE+ SRC+ EAKK+ ED++AE   + IVE+EA E LR  ++K QE   Q EEE QMCAREL ALIDSVSK+KE MTS ISEMK     TV  +S+++K SL
Sbjct:    1 MRAAGAGRRHPKDSFA---QRPPPTPTPTADTWQ--FTSRDSDVSLCSSRPASSIGTNRSAAVPITDRGYQLSAIRTINAYLASHSSQISIKPTLPSAKDVTETLKFVLNGLEFP---PIKLEEDFYVVIKQLNCPIKLNKSALRAPGNPHTWPNLLGVIHWLVQIAMYNDHLNDSPRVNS--SFEDTLFRYAMESYLHFISGNDDSVEMLDSEVVERLQQEKKSIEERVEALKESVKNLEGKKEDLRTKPSPREQLEEQRSVLEEDVKKFHAIIEQLNGHIVTVEKVLEEKEKELEVKVEEKRRICEENEELKKRIEMQGINARDADRMKRELQAVERDIGDSEVARNAWEEKSWDLDAKIGYKLKDLEAFSIECNQGIKRLKLGNDFQFKLNAKGSTPAEVLGMDYKSTLKPALTSFDDDIKKSSMAKLEEMIALQQQSVENAAKIEAKRNRIAALQSRIDEMEAQSNLLMKETQEYTSRCIAEAKKMAEDIEAEAHKLGIVEREAAEFLRNYKLKLQEAIVQEEEETQMCARELYALIDSVSKYKEYMTSKISEMKSALSDTVGSVSDMYKGSL 567    
BLAST of DCAR_029239 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0ESB6 ((Uncharacterized protein {ECO:0000313|EMBL:GFY89323.1}))

HSP 1 Score: 610.912 bits (1574), Expect = 0.000e+0
Identity = 343/578 (59.34%), Postives = 429/578 (74.22%), Query Frame = 0
 
Query:    1 MRPAGA--RRQKDSIAGDHRKPPPPTPTSFDPFQYNFSNRDSDASLCSSRPSIA--STTRNPSVPISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNYDE----VTRGNGLEYEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHKSSL 570
            MR AGA  RR KDS A    + PPPTPTS D +Q  F++RDSDASLCSSRPS +     R+ +VPI+D+ +QLSA+RT+N YLS HS+  S+KP LPSAKD+ ETLK +L  L+FP    NK E++ + V+K L CP+K+N+SAL+APG PH+WP+LLGV+HWLVQI  Y++      + N +   E+ +F YA+  Y  +ISG+D+ +E  D   +EKL  E+  +EE    L E V+ LEGK E L+  PS +E LEEQR +LEEDVKKF+ +IEQL+GHIV V+K LEEKEKELE KVEE++RICEENEELK R+E QG NARDA+RMKRELQAVER+ GD+E AR+AWEEKSW+LD++IG K K+LE+  IECNQ I++LKLGN FQ++LNAK STPAEVLG+DYK  LKP L S  ++ KKSSM KLEE I+LQ+  VE A KIEAKRN IAALQ  IDE+E Q NLL  ETQE+ SRC+ EAK + ED++AE   + IVE+EA E LR  ++K QE   Q EEE QMCAREL ALIDSVSK+KE MTS ISEMK     TV  +S+++K SL
Sbjct:    1 MRAAGAGRRRPKDSFA----QRPPPTPTS-DTWQ--FTSRDSDASLCSSRPSSSSIGINRSAAVPITDRGYQLSAIRTINAYLSSHSSQISIKPTLPSAKDVTETLKFVLNRLEFP---PNKLEEDFYVVIKQLNCPIKLNKSALRAPGNPHTWPNLLGVIHWLVQIAMYNDHLNDSPQVNSIF--EDTLFSYAMESYLLFISGNDDSVEMLDSEVVEKLQQEKKSIEERVEALKESVKNLEGKKEDLRTKPSPREQLEEQRSVLEEDVKKFHAIIEQLNGHIVTVEKVLEEKEKELEVKVEEKRRICEENEELKKRIEMQGINARDADRMKRELQAVERDIGDSEVARNAWEEKSWDLDAKIGYKLKDLEAFSIECNQGIKRLKLGNDFQFKLNAKGSTPAEVLGMDYKSTLKPALTSFDDDIKKSSMAKLEEMIALQQQSVENAAKIEAKRNRIAALQSRIDEMEAQSNLLMKETQEYTSRCIAEAKNMAEDIEAEAHKLGIVEREAAEFLRNYKLKLQEAIVQEEEETQMCARELYALIDSVSKYKEYMTSKISEMKSALSDTVGSVSDMYKGSL 566    
BLAST of DCAR_029239 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2W8W0 ((Uncharacterized protein {ECO:0000313|EMBL:PHT41629.1}))

HSP 1 Score: 610.142 bits (1572), Expect = 0.000e+0
Identity = 318/574 (55.40%), Postives = 415/574 (72.30%), Query Frame = 0
 
Query:    1 MRPAGARRQKDSIAGDHRKPPPPTPTSFDPFQY-NFSNRDSDASLCSSRPSIAS-TTRNPSVPISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNYDE--VTRGNGLEYEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHKSSL 570
            MR AG RR+ +S+  D R+ PPPTP + DP Q+ +   RDSDAS  SSRPS A   +R+ ++PISD+S+Q SA+RT+N YLS H+   +LK PLPSA+DI ETLK IL    F     NK ED L  +LK L CPVK+N+SAL+APGTPHSWPSLL V+HWLVQ+  +D+  ++ G  L   EN    Y +  Y  Y  G DE ++  D+ F+ +L   +  + E    L   V+  E KLE +K GPSE+EVLE ++  LEEDVKKF+ +IEQL+GHIV ++K ++EKEK LEAKV E++ IC ENEELK RVEEQG N+RDA+RMKREL A+ER+ GD E  R  WEEK+W+LDS IG  FK+LE LMIECNQ+IR+LKLGN FQY+LNA+ S+PAEVLGIDYK KLKP LAS  +E KKSSM K+EE ISLQ+  VE A K+E+K+N +AALQ HID +E QL+L++ E Q+  S C  EA+++VE+V+ E + +D VE+EA E L+ S+ K QE  AQ+EEEVQ+CAREL A++DSVSK+KE +TS ++ MK D  +TV  I+++HK+ L
Sbjct:    1 MRGAG-RRRTNSVVPD-RRHPPPTPIN-DPRQFLSTGGRDSDASFASSRPSSAGINSRSSAIPISDRSYQNSAMRTINAYLSSHNLP-TLKAPLPSARDITETLKFILSRFGFSTVESNKLEDNLQVLLKSLNCPVKLNKSALRAPGTPHSWPSLLAVIHWLVQLCKFDDHRLSSGQPL-APENKELSYTIESYLQYFRGKDEEVDELDRQFMIELEQHKEQLIENVNVLEGNVKAQEEKLEAMKTGPSEREVLENEKSALEEDVKKFHAIIEQLEGHIVTLEKMVDEKEKGLEAKVVEKESICAENEELKKRVEEQGINSRDADRMKRELHALERDIGDIENQRIEWEEKAWDLDSAIGSMFKKLEELMIECNQSIRRLKLGNEFQYQLNAQGSSPAEVLGIDYKKKLKPTLASFEDEMKKSSMGKMEELISLQQQSVERATKVESKKNRLAALQAHIDNLEAQLDLVKKERQDFTSSCATEARRIVEEVETETRKLDQVEREAAEFLKASKAKLQETIAQTEEEVQLCARELFAVVDSVSKYKEYITSKVAIMKNDLAETVGTIADMHKAGL 569    
BLAST of DCAR_029239 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6Q6G8 ((Kinetochore protein {ECO:0000313|EMBL:PSS02851.1}))

HSP 1 Score: 610.142 bits (1572), Expect = 0.000e+0
Identity = 336/577 (58.23%), Postives = 426/577 (73.83%), Query Frame = 0
 
Query:    1 MRPAGARRQ--KDSIAGDHRKPPPPTPTSFDPFQYNFSNRDSDASLCSSRP-SIASTTRNPSVPISDKSFQLSALRTVNNYLSLHSATFSLKPPLPSAKDIIETLKLILKNLDFPMSGGNKFEDELFGVLKYLGCPVKVNRSALKAPGTPHSWPSLLGVMHWLVQIGNYDE----VTRGNGLEYEENGMFDYALRGYFHYISGDDERMESEDQMFLEKLTNERNVVEEGARGLAERVRELEGKLEGLKNGPSEKEVLEEQRKLLEEDVKKFYTMIEQLDGHIVNVQKSLEEKEKELEAKVEERKRICEENEELKSRVEEQGFNARDAERMKRELQAVERNTGDAEAARSAWEEKSWELDSEIGKKFKELESLMIECNQAIRKLKLGNGFQYELNAKVSTPAEVLGIDYKLKLKPVLASLAEETKKSSMVKLEEQISLQKLFVEAANKIEAKRNHIAALQFHIDEVENQLNLLRDETQEHISRCMMEAKKLVEDVKAEEQNMDIVEKEATELLRTSQMKCQEVNAQSEEEVQMCARELLALIDSVSKFKESMTSTISEMKEDYLKTVSVISEIHKSSL 570
            MR AGA R+  KDS A   ++PPP    + D +Q  F++RDSD SLCSSRP S   T R+ +VPI+D+ +QLSA+RT+N YL+ HS+  S+KP LPSAKD+ ETLK +L  L+FP     K E++ + V+K L CP+K+N+SAL+APG PH+WP+LLGV+HWLVQI  Y++      R N     E+ +F YA+  Y H+ISG+D+ +E  D   +E+L  E+  +EE    L E V+ LEGK E L+  PS +E LEEQR +LEEDVKKF+ +IEQL+GHIV V+K LEEKEKELEAKV+E++RICEENEELK R+E QG NARDAERMKRELQAVER+ GD+E AR+AWEEKSW+L++ IG K K+LE+L IECNQ I++LKLGN FQY+LNA+ STPAEVLG+DYK  LKPVL S  ++ K SSM KLEE I+LQ+  VE A KIEAKRNHIAALQ  IDEVE Q NLL  ET+E+ SRC+ EAKK+ ED++A+   + IVE+EA E LR  ++K QE   Q EE  QMCAREL ALIDSVSK+KE M S I EMK    +TV  +S+++K SL
Sbjct:    1 MRAAGAGRRHPKDSFA---QRPPPTPTPTADTWQ--FTSRDSDVSLCSSRPASSIGTNRSAAVPITDRGYQLSAIRTINAYLASHSSQISIKPTLPSAKDVTETLKFVLNGLEFP---PIKLEEDFYVVIKQLNCPIKLNKSALRAPGNPHTWPNLLGVIHWLVQIAMYNDHLNDSPRVNS--SFEDTLFRYAMESYLHFISGNDDSVEMLDSEVVERLQQEKKSIEERVEALKESVKNLEGKKEDLRTKPSPREQLEEQRSVLEEDVKKFHAIIEQLNGHIVTVEKVLEEKEKELEAKVKEKRRICEENEELKKRIEMQGINARDAERMKRELQAVERDIGDSEVARNAWEEKSWDLNATIGHKLKDLEALSIECNQGIKRLKLGNDFQYKLNAEGSTPAEVLGMDYKSTLKPVLTSFGDDIKNSSMEKLEEMIALQQQSVENAAKIEAKRNHIAALQSRIDEVETQSNLLMKETREYTSRCIAEAKKMAEDIEAQAHELHIVEREAEEFLRNYKLKLQEAIVQEEEATQMCARELYALIDSVSKYKEYMASKILEMKRALSETVGSVSDLYKGSL 567    
Match NameStatsDescription
A0A5B7CC67E-Value: 0.000e+0, PID: 61.35(Putative kinetochore protein ndc80-like {ECO:0000... [more]
A0A5J5B1F0E-Value: 0.000e+0, PID: 61.14(Uncharacterized protein {ECO:0000313|EMBL:KAA8536... [more]
A0A2G9FZZ3E-Value: 0.000e+0, PID: 58.14(Centromere-associated protein HEC1 {ECO:0000313|E... [more]
A0A2Z7AIK1E-Value: 0.000e+0, PID: 58.29(Uncharacterized protein {ECO:0000313|EMBL:KZV2117... [more]
A0A7J7G8B9E-Value: 0.000e+0, PID: 60.10PIPK domain-containing protein {ECO:0000259|PROSIT... [more]
F6H969E-Value: 0.000e+0, PID: 59.89(Uncharacterized protein {ECO:0000313|EMBL:CCB4874... [more]
A0A2R6RGR0E-Value: 0.000e+0, PID: 58.58(Kinetochore protein {ECO:0000313|EMBL:PSS29178.1}... [more]
A0A7J0ESB6E-Value: 0.000e+0, PID: 59.34(Uncharacterized protein {ECO:0000313|EMBL:GFY8932... [more]
A0A2G2W8W0E-Value: 0.000e+0, PID: 55.40(Uncharacterized protein {ECO:0000313|EMBL:PHT4162... [more]
A0A2R6Q6G8E-Value: 0.000e+0, PID: 58.23(Kinetochore protein {ECO:0000313|EMBL:PSS02851.1}... [more]

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Analysis: 
NameDescription

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.

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