Resource Type:
Polypeptide
Name:
DCAR_029869
Identifier:
DCAR_029869.mRNA-protein
Sequence:
MSEPQAVEDEDKSKNSTRKPGNSASYPVGLIDRESLMMMDVDLDLDASWI
FDQISTDPASPFLLSDQPFSPLWPFSDDASALSAPLTGVSLPLLPSCDPQ
LTYDNKQCSSNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKEST
EQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSV
DGESNLLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLAL
PVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALEICNKGRQNALAEI
LEVLTLVCETHKLPLAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVC
MSTTDVAYYVVDYHMWGFREACAEHHLLKGQGVAGRSFSSQSSCFCEDIT
KFSKTEYPLVHYARMFGLSSSFAICLQSSHTGNDNYILEFFMPPNTLEGN
KHYTMLDTMLATMKKQFRSLKVASGKELDEEGRSVEVIEASSDGDPDSRI
ISVQKLESNVIPCTVTRDGENGHVDLSGKPIIQKSDAVTNIANVAGSGEI
SNGAPLSENKDAKKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVC
PTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFTLTSL
AKSSLPAGVGSVSWPVSLNGSSPQNSPVSIPSEVRAEINNDGQAENIDLP
SGGRLQCEDEYIHLQGGYIPELGEGSNRSKTGSGSREHSTGTPTSHASAQ
GSPFNVNNSSQNDQVVSLLGEDCLKVGASFEMARQPIKEANLPVAFPVPN
VVVGAETEELFGGMLIEDAGSSHDLTNLCQTGGTFPDERIPESSWANQPP
SDEFLKGSVPHLEEKPQIPSRTEVKTVTVKATYKEDIIRFRLPLSSGIIK
LEEEVSKRVKLEVGTFDLKYLDDDQEWVLIACDADLQECVEISRSSGRNI
IRLLVQDIMANLGSSCESSG*
Sequence Length:
971
Sequence Checksum:
8fce0cd82676d478fc579d2e7fd07a6f
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_029869, derives from mRNA, DCAR_029869. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_029869 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_029869 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZGF0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA42961.1}))
HSP 1 Score: 1253.81 bits (3243), Expect = 0.000e+0
Identity = 645/980 (65.82%), Postives = 759/980 (77.45%), Query Frame = 0
Match: A0A5B6ZGF0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA42961.1}))
HSP 1 Score: 1253.81 bits (3243), Expect = 0.000e+0
Identity = 645/980 (65.82%), Postives = 759/980 (77.45%), Query Frame = 0
Query: 30 LIDRESLMMMDVDLDLDASWIFDQI-STDPASPFLLS--DQPFSPLWPFSDD---ASALSAPLTGVSLPLLPSCDPQLTYDNKQCSSNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKESTEQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSVDGESN-LLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLALPVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALE----------------ICNKGRQNALAEILEVLTLVCETHKLPLAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVCMSTTDVAYYVVDYHMWGFREACAEHHLLKGQGVAGRSFSSQSSCFCEDITKFSKTEYPLVHYARMFGLSSSFAICLQSSHTGNDNYILEFFMPPNTLEGNKHYTMLDTMLATMKKQFRSLKVASGKELDEEGRSVEVIEASSDGDPDSRIISVQKLESNVIPC---TVTRDGENGHVDLSGKPIIQKSDAVTNIANVAGSGEISNGAPLSENKDAKKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFTLTSLAKSSLPAGVGSVSWPVSLNGSSPQNSPVSIPSEVRAEIN---------NDGQAENIDLPSGGRLQCEDEYIHLQGGYIPELGEGSNRSKTGSGSREHSTGTPTSHASAQGSPF-NVNNSSQNDQVVSLLGEDCLKVGASFEMARQPIKEANLPVAFPVPNVVVGAETEELFGGMLIEDAGSSHDLTNLCQTGGTFPDERIPESSWANQPPSDEFLKGS-VPHLEEKPQIPSRTEVKTVTV--KATYKEDIIRFRLPLSSGIIKLEEEVSKRVKLEVGTFDLKYLDDDQEWVLIACDADLQECVEISRSSGRNIIRLLVQDIMANLGSSCESSG 970
+++RESL +D+DLD SW FDQI + +P SPF LS +QP SPLW FSDD +A +AP + ++ L +C+P ++ ++DK+ +P P+LGL P+DY DGSC+IKERMTQALRY KESTEQHVLAQ+WAPVK G +YVLTTSGQPFVL +S+GLHQYRM S MY+FSVDGES+ +LGLPGRVF+QKLPEWTPNVQYYSSKEYPRL++ALHYNV+GTLALPVFEPSG +C+GVLELIMTSQKINYAPEVDK+CKALE ICN+GRQNALAEILE+LT VCETHKLPLAQTWVPCRHRSVL GGGLKKSCSSFDGSCMGQVCMSTTDVA+YVVD HMWGFREACAEHHL KGQGVAGR+F+S +SCFCEDIT+F KTEYPLVHYARMFGL+SSFAICLQS++TG D+YILEFF+PPN + +T+LD++L TM+ FRSL+VASGKE + EGRS + I+AS+D DSR+ SVQ +S + P + GE H+D + +++ DA++ + +G + N P SENKD KKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSL VCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEG FTLTSLA SSLP VGS+ WP SLNGS+ QNSPVS PSE+ E N +DGQAE + GGR+ E IH Q G++PELGEG N+S+TGSGSRE STGTPTSH S QGSP + +S QND V + E ++VG FE+A QPI E NL F +P+ +V + +E FGGMLIEDAGSSHDL NLC D+++P P D + S V + P +R E KT+T+ KATY+EDIIRFRL L+SGI+KL+EEV+KR+KLEVGTFD+KYLDDD EWVLIACDADLQEC +IS+SSGRNIIRLLV DIMANLGSSCES+G
Sbjct: 24 VVERESLTGLDIDLD--GSWSFDQIFACNPTSPFFLSSSEQPCSPLWTFSDDNDEKTAGNAP-SALAGSLRLACNPDSIIESPY-ENDDKRRMPPPILGLTPIDYPDGSCVIKERMTQALRYLKESTEQHVLAQVWAPVKNGGQYVLTTSGQPFVLDPHSNGLHQYRMVSAMYVFSVDGESDEVLGLPGRVFRQKLPEWTPNVQYYSSKEYPRLNHALHYNVRGTLALPVFEPSGQSCVGVLELIMTSQKINYAPEVDKICKALEAVDLKSSEILDHPNTQICNEGRQNALAEILEILTAVCETHKLPLAQTWVPCRHRSVLTCGGGLKKSCSSFDGSCMGQVCMSTTDVAFYVVDAHMWGFREACAEHHLQKGQGVAGRAFASHNSCFCEDITQFCKTEYPLVHYARMFGLTSSFAICLQSTNTGCDDYILEFFLPPNITDSRDQHTLLDSLLVTMRHHFRSLRVASGKEFEYEGRSAQFIKASTDEKLDSRLESVQIPQSMISPPGPDALPNGGEMVHLDSLEQQLMEDFDAISGVNVGG-AGGVQNAVPFSENKDTSKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLRVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFTLTSLATSSLPVAVGSIPWPASLNGSNQQNSPVSNPSELLGEKNELPSHKTPGSDGQAETANQMLGGRVLGNKELIHEQTGFMPELGEGWNQSRTGSGSREESTGTPTSHGSCQGSPRPGIESSPQNDGFVFPIHEQGIEVGGLFELACQPIGELNLSAGFSIPDALVTTQPQEPFGGMLIEDAGSSHDLRNLCPGAEALLDKQVP-------PCPDVVPRESMVTPADRTPHFLARPEPKTITITMKATYREDIIRFRLSLNSGIVKLKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECADISKSSGRNIIRLLVHDIMANLGSSCESTG 991
BLAST of DCAR_029869 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZG20 ((Uncharacterized protein {ECO:0000313|EMBL:MPA42964.1}) (Fragment))
HSP 1 Score: 1249.57 bits (3232), Expect = 0.000e+0
Identity = 642/962 (66.74%), Postives = 739/962 (76.82%), Query Frame = 0
Match: A0A5B6ZG20 ((Uncharacterized protein {ECO:0000313|EMBL:MPA42964.1}) (Fragment))
HSP 1 Score: 1249.57 bits (3232), Expect = 0.000e+0
Identity = 642/962 (66.74%), Postives = 739/962 (76.82%), Query Frame = 0
Query: 47 ASWIFDQI-STDPASPFLL--SDQPFSPLWPFSDDA---------SALSAPLTGVSLPLLPSCDPQLTYDNKQCSSNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKESTEQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSVDGESN-LLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLALPVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALE----------------ICNKGRQNALAEILEVLTLVCETHKLPLAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVCMSTTDVAYYVVDYHMWGFREACAEHHLLKGQGVAGRSFSSQSSCFCEDITKFSKTEYPLVHYARMFGLSSSFAICLQSSHTGNDNYILEFFMPPNTLEGNKHYTMLDTMLATMKKQFRSLKVASGKELDEEGRSVEVIEASSDGDPDSRIISVQKLESNVIPCTVTRDGENGHVDLSGKPIIQKSDAVTNIANVAGSGEISNGAPLSENKDAKKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFTLTSLAKSSLPAGVGSVSWPVSLNGSSPQNSPVSIPSEV---------RAEINNDGQAENIDLPSGGRLQCEDEYIHLQGGYIPELGEGSNRSKTGSGSREHSTGTPTSHASAQGSPF-NVNNSSQNDQVVSLLGEDCLKVGASFEMARQPIKEANLPVAFPVPNVVVGAETEELFGGMLIEDAGSSHDLTNLCQTGGTFPDERIPESSWANQPPSDEFLKGSVPHLEEKPQIPS-RTEVKTVTVKATYKEDIIRFRLPLSSGIIKLEEEVSKRVKLEVGTFDLKYLDDDQEWVLIACDADLQECVEISRSSGRNIIRLLVQDIMANLGSSCES 968
SW FDQI + +P SPFLL SDQP SP+ FSD + S L L P L +C+P + +DK+ LP P+L PLDY DGSC++KERMTQALRYF+ESTEQHVLAQ+WAPVK G R VLTTSGQPFVLG +S+GLHQYRM S MYMFSVDGES+ +LGLPGRVF+QKLPEWTPNVQYYSSKEYPRL++AL YNV+GTLALPVFEPSG +C+GVLELIMTSQKINYAPEVDK+CKALE ICN+GRQNALAEILE+LT VCETHKLPLAQTWVPCRHRSVL GGGLKKSCSSFDGSCMGQVCMSTTDVA+YVVD H+WGFREACAEHHL KGQGVAGR F+S +SCFCEDIT+F KTEYPLVHYARMFGL+SSFAICLQS++TG+D+YILEFF+PPN + T+LD++LATMK+ FRSLKVASGKEL++EGRSV++I+AS+D DSR+ SV+ +S + P NGH+D + ++ DA++ NV+G G I N P SEN+ KKS RKRGKAEKSISLEVLQQYFAGSLKDAAKSL VCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEG FTLTSLA SS PA VGS+SWP SLNG + QNSP S PSE R + +DGQAE + GGR+ DE IH Q G + ELGEGSNRSKTGSGSRE STGTP S S QGSP + +S QND VVS + E+ +KVG E+A QP E NL F +P+++V + +E FGGMLIEDAGSSHDL +LC DER+PE SW N P D K S+ IP+ TE+KTVT+KA YKE+IIRFRL LSSGI+KL+EEV+KR+KLE+GTFD+KYLDDD+EWVLI CD DLQEC++ S+SSG NIIRLLV DIMANLGSSCES
Sbjct: 44 GSWPFDQIFACNPMSPFLLLSSDQPCSPIGTFSDASNDKPAGNTQSTLDPSLRLADYPRLLACNPD-SITESTSGDDDKRRLPPPILSSAPLDYPDGSCVLKERMTQALRYFQESTEQHVLAQVWAPVKNGGRNVLTTSGQPFVLGSHSNGLHQYRMVSRMYMFSVDGESDEVLGLPGRVFRQKLPEWTPNVQYYSSKEYPRLNHALDYNVRGTLALPVFEPSGQSCVGVLELIMTSQKINYAPEVDKICKALEAVDLKSSEILDHPNTQICNEGRQNALAEILEILTAVCETHKLPLAQTWVPCRHRSVLTCGGGLKKSCSSFDGSCMGQVCMSTTDVAFYVVDAHLWGFREACAEHHLQKGQGVAGRVFASHNSCFCEDITQFCKTEYPLVHYARMFGLTSSFAICLQSTNTGSDDYILEFFLPPNITDSGHQQTLLDSLLATMKQHFRSLKVASGKELEDEGRSVKIIKASTDEKLDSRLESVRISQSTISP-PGPGALPNGHLDSLEQQLMVDFDAISGGVNVSGEGGIQNAIPFSENEGTSKKSARKRGKAEKSISLEVLQQYFAGSLKDAAKSLRVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFTLTSLATSSYPAAVGSISWPASLNGWNQQNSPGSNPSEFPGEKNELPSRKSLGSDGQAETANQMLGGRVLGNDELIHEQTGILLELGEGSNRSKTGSGSREESTGTPISLGSCQGSPCPGIESSPQNDPVVSPIPEEGIKVGELLELAFQPTGELNLSAGFSIPDILVTTQPQEPFGGMLIEDAGSSHDLRSLCPAAEALLDERVPECSWTNPPCPDVVPKESM-------TIPADTTELKTVTIKAAYKENIIRFRLSLSSGIVKLKEEVTKRLKLEMGTFDIKYLDDDREWVLITCDVDLQECMDFSKSSGSNIIRLLVHDIMANLGSSCES 996
BLAST of DCAR_029869 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZF01 ((Uncharacterized protein {ECO:0000313|EMBL:MPA42962.1}) (Fragment))
HSP 1 Score: 1246.49 bits (3224), Expect = 0.000e+0
Identity = 635/948 (66.98%), Postives = 740/948 (78.06%), Query Frame = 0
Match: A0A5B6ZF01 ((Uncharacterized protein {ECO:0000313|EMBL:MPA42962.1}) (Fragment))
HSP 1 Score: 1246.49 bits (3224), Expect = 0.000e+0
Identity = 635/948 (66.98%), Postives = 740/948 (78.06%), Query Frame = 0
Query: 61 PFLLS--DQPFSPLWPFSDD---ASALSAPLTGVSLPLLPSCDPQLTYDNKQCSSNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKESTEQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSVDGESN-LLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLALPVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALE----------------ICNKGRQNALAEILEVLTLVCETHKLPLAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVCMSTTDVAYYVVDYHMWGFREACAEHHLLKGQGVAGRSFSSQSSCFCEDITKFSKTEYPLVHYARMFGLSSSFAICLQSSHTGNDNYILEFFMPPNTLEGNKHYTMLDTMLATMKKQFRSLKVASGKELDEEGRSVEVIEASSDGDPDSRIISVQKLESNVIPC---TVTRDGENGHVDLSGKPIIQKSDAVTNIANVAGSGEISNGAPLSENKDAKKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFTLTSLAKSSLPAGVGSVSWPVSLNGSSPQNSPVSIPSEVRAEIN---------NDGQAENIDLPSGGRLQCEDEYIHLQGGYIPELGEGSNRSKTGSGSREHSTGTPTSHASAQGSPF-NVNNSSQNDQVVSLLGEDCLKVGASFEMARQPIKEANLPVAFPVPNVVVGAETEELFGGMLIEDAGSSHDLTNLCQTGGTFPDERIPESSWANQPPSDEFLKGS-VPHLEEKPQIPSRTEVKTVTV--KATYKEDIIRFRLPLSSGIIKLEEEVSKRVKLEVGTFDLKYLDDDQEWVLIACDADLQECVEISRSSGRNIIRLLVQDIMANLGSSCESSG 970
PF LS +QP SPLW FSDD +A +AP + ++ L +C+P ++ ++DK+ +P P+LGL P+DY DGSC+IKERMTQALRY KESTEQHVLAQ+WAPVK G +YVLTTSGQPFVL +S+GLHQYRM S MY+FSVDGES+ +LGLPGRVF+QKLPEWTPNVQYYSSKEYPRL++ALHYNV+GTLALPVFEPSG +C+GVLELIMTSQKINYAPEVDK+CKALE ICN+GRQNALAEILE+LT VCETHKLPLAQTWVPCRHRSVL GGGLKKSCSSFDGSCMGQVCMSTTDVA+YVVD H+WGFREACAEHHL KGQGVAGR F+S +SCFCEDIT+F KTEYPLVHYARMFGL+SSFAICL+S+HTGNDNYILEFF+PPN + T+LD++LATMK+ FRSLKVASGKEL++EGRSV++I+AS+D DSR+ SV+ +S + P + GE H+D + ++ DA++ NV+G G I N P SEN+ KKS RKRGKAEKSISLEVLQQYFAGSLKDAAKSL VCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEG FTLTSLA SSLP VGS+ WP SLNGS+ QNSPVS PSE+ E N +DGQAE + GGR+ E IH Q G++PELGEG N+S+TGSGSRE STGTPTSH S QGSP + +S QND V + E ++VG FE+A QPI E NL F +P+ +V + +E FGGMLIEDAGSSHDL NLC D+++P P D + S V + P +R E KT+T+ KATY+EDIIRFRL L+SGI+KL+EEV+KR+KLEVGTFD+KYLDDD EWVLIACDADLQEC +IS+SSGRNIIRLLV DIMANLGSSCES+G
Sbjct: 1 PFFLSSSEQPCSPLWTFSDDNDEKTAGNAP-SALAGSLRLACNPDSIIESPY-ENDDKRRMPPPILGLTPIDYPDGSCVIKERMTQALRYLKESTEQHVLAQVWAPVKNGGQYVLTTSGQPFVLDPHSNGLHQYRMVSAMYVFSVDGESDEVLGLPGRVFRQKLPEWTPNVQYYSSKEYPRLNHALHYNVRGTLALPVFEPSGQSCVGVLELIMTSQKINYAPEVDKICKALEAVDLKSSEILDHPNTQICNEGRQNALAEILEILTAVCETHKLPLAQTWVPCRHRSVLTCGGGLKKSCSSFDGSCMGQVCMSTTDVAFYVVDAHLWGFREACAEHHLQKGQGVAGRVFASHNSCFCEDITQFCKTEYPLVHYARMFGLTSSFAICLRSTHTGNDNYILEFFLPPNITDSGHQQTLLDSLLATMKQHFRSLKVASGKELEDEGRSVKIIKASTDEKLDSRLESVRISQSTISPPGPEALPNGGEMVHLDSLEQQLMVDFDAISGGVNVSGEGGIQNAIPFSENEGTSKKSARKRGKAEKSISLEVLQQYFAGSLKDAAKSLRVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFTLTSLATSSLPVAVGSIPWPASLNGSNQQNSPVSNPSELLGEKNELPSHKTPGSDGQAETANQMLGGRVLGNKELIHEQTGFMPELGEGWNQSRTGSGSREESTGTPTSHGSCQGSPRPGIESSPQNDGFVFPIHEQGIEVGGLFELACQPIGELNLSAGFSIPDALVTTQPQEPFGGMLIEDAGSSHDLRNLCPGAEALLDKQVP-------PCPDVVPRESMVTPADRTPHFLARPEPKTITITMKATYREDIIRFRLSLNSGIVKLKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECADISKSSGRNIIRLLVHDIMANLGSSCESTG 939
BLAST of DCAR_029869 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AGD1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8528211.1}))
HSP 1 Score: 1245.72 bits (3222), Expect = 0.000e+0
Identity = 647/1012 (63.93%), Postives = 765/1012 (75.59%), Query Frame = 0
Match: A0A5J5AGD1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8528211.1}))
HSP 1 Score: 1245.72 bits (3222), Expect = 0.000e+0
Identity = 647/1012 (63.93%), Postives = 765/1012 (75.59%), Query Frame = 0
Query: 1 MSEPQAVEDEDKSKNSTRKPGNSASYPVGLIDRESLMMMDVDLDLDASWIFDQI-STDPASPFLLS--DQPFSPLWPF---SDDASALSAPLT-GVSLPL-----LPSCDPQLTYDNKQCSSNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKESTEQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSVDGESN-LLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLALPVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALE----------------ICNKGRQNALAEILEVLTLVCETHKLPLAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVCMSTTDVAYYVVDYHMWGFREACAEHHLLKGQGVAGRSFSSQSSCFCEDITKFSKTEYPLVHYARMFGLSSSFAICLQSSHTGNDNYILEFFMPPNTLEGNKHYTMLDTMLATMKKQFRSLKVASGKELDEEGRSVEVIEASSDGDPDSRIISVQKLESNVIPC---TVTRDGENGHVDLSGKPIIQKSDAVTNIANVAGSGEISNGAPLSENKDAKKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFTLTSLAKSSLPAGVGSVSWPVSLNGSSPQNSPVSIPSEVRAEIN---------NDGQAENIDLPSGGRLQCEDEYIHLQGGYIPELGEGSNRSKTGSGSREHSTGTPTSHASAQGSPF-NVNNSSQNDQVVSLLGEDCLKVGASFEMARQPIKEANLPVAFPVPNVVVGAETEELFGGMLIEDAGSSHDLTNLCQTGGTFPDERIPESSWANQPPSDEFLKGSVPHLEEK-PQIPSRTEVKTVTVKATYKEDIIRFRLPLSSGIIKLEEEVSKRVKLEVGTFDLKYLDDDQEWVLIACDADLQECVEISRSSGRNIIRLLVQDIMANLGSSCESS 969
MSEP E+ DK + N+A PV + RESLM DLDLD SW FDQI + +P SPFL S +QP SPLW F +DD + +AP T SLP+ + +C+P ++ ++DK+ LP P+L L P+DY D S +IKERMTQALRYFKESTEQHVLAQ+WAPVK G +YVLTTSGQPF L SSGLHQYRM S+ YMFSVDGES+ +LGLPGRVF++KLPEWTPNVQYYSSKEYPRL +ALHYNVQG+LALPVFE SG +C+GVLEL+MTSQKINYAPEVDKVCKALE ICN+GRQN+LAEILE+LT+VCETHKLPLAQTWVPCRHR VL YGGGLKKSCSSFDGSCMGQ+CMSTTD A+YVVD H+WGFREAC EHHL KGQGVAGR+F+S SSCFCEDIT+F KTEYPLVHYARMFGL+SSFAICLQS+HTGNDNYI+EFF+PPN G T+LD++LATMK+ FRSLKVASGK+L++EGRSVE+I+AS+D DSR+ S +S + P + +GE H D + ++ D ++ + NV G G I N P SENKD KKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKI KVNRSLSKLKRVIESVQGAEG FTLTS+A SSLP VGS+SW +LNGS+ QNSP S PSE+ E N +D Q + GGR+ + Q G++PEL E NRSK GSGSRE STGTPTSH S QGSP +S +ND VV + + + +GASFE+A QP E NL F +P+ +V + +E FGGMLIED GSSHDL NLC D+R+PE SW N P D + S+ + ++ P + SR+ +KT+T+KATY+ED+IRFRL L+SGI+KL+EEV+KR+KL +GTFD+KYLDDDQ+WVLI CDADLQEC++IS+SSG NIIRLLV DIMANLGSSCES+
Sbjct: 1 MSEP---EEADKPFPPKSRELNTAP-PV--VQRESLM--GFDLDLDGSWSFDQIVACNPTSPFLFSSSEQPCSPLWVFYDDNDDKTVGNAPSTIAGSLPVADYNRILACNPDSIIESPY-GNDDKRRLPPPILDLTPIDYLDSSFVIKERMTQALRYFKESTEQHVLAQVWAPVKSGGQYVLTTSGQPFFLDSQSSGLHQYRMVSLTYMFSVDGESDEILGLPGRVFRKKLPEWTPNVQYYSSKEYPRLIHALHYNVQGSLALPVFETSGQSCVGVLELVMTSQKINYAPEVDKVCKALEAVNLKSSEILDHANTQICNEGRQNSLAEILEILTVVCETHKLPLAQTWVPCRHRRVLTYGGGLKKSCSSFDGSCMGQICMSTTDAAFYVVDAHLWGFREACNEHHLQKGQGVAGRAFASHSSCFCEDITQFCKTEYPLVHYARMFGLTSSFAICLQSTHTGNDNYIIEFFLPPNITNGRDQRTLLDSLLATMKQHFRSLKVASGKKLEDEGRSVEIIKASTDEKLDSRLESGGIPQSTISPPGSDALPNEGEMVHPDSLEEQLMMNFDGISGV-NVRGEGGIQNAGPFSENKDTSKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKRVIESVQGAEGAFTLTSMATSSLPVAVGSISWSATLNGSNQQNSPGSNPSELLEEKNELPSHKTPESDVQYDTATQMLGGRVLGNKVLVCEQTGFMPELDEDWNRSKAGSGSREESTGTPTSHGSCQGSPCPGTESSPRNDPVVFPIHKQDINIGASFELACQPTGELNLSTGFSIPDALVTTQPQEPFGGMLIEDVGSSHDLRNLCPAAEVLLDKRVPEYSWTNPPCPDVVPEESMANPADRMPHLLSRSVLKTITIKATYREDLIRFRLSLNSGIVKLKEEVAKRLKLAMGTFDVKYLDDDQDWVLIVCDADLQECMDISKSSGSNIIRLLVHDIMANLGSSCEST 1002
BLAST of DCAR_029869 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZIV0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA42963.1}) (Fragment))
HSP 1 Score: 1215.29 bits (3143), Expect = 0.000e+0
Identity = 627/955 (65.65%), Postives = 725/955 (75.92%), Query Frame = 0
Match: A0A5B6ZIV0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA42963.1}) (Fragment))
HSP 1 Score: 1215.29 bits (3143), Expect = 0.000e+0
Identity = 627/955 (65.65%), Postives = 725/955 (75.92%), Query Frame = 0
Query: 47 ASWIFDQI-STDPASPFLLS--DQPFSPLWPFSDDA---------SALSAPLTGVSLPLLPSCDPQLTYDNKQCSSNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKESTEQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSVDGESN-LLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLALPVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALE----------------ICNKGRQNALAEILEVLTLVCETHKLPLAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVCMSTTDVAYYVVDYHMWGFREACAEHHLLKGQGVAGRSFSSQSSCFCEDITKFSKTEYPLVHYARMFGLSSSFAICLQSSHTGNDNYILEFFMPPNTLEGNKHYTMLDTMLATMKKQFRSLKVASGKELDEEGRSVEVIEASSDGDPDSRIISVQKLESNVIPC---TVTRDGENGHVDLSGKPIIQKSDAVTNIANVAGSGEISNGAPLSENKDAKKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFTLTSLAKSSLPAGVGSVSWPVSLNGSSPQNSPVSIPSEV---------RAEINNDGQAENIDLPSGGRLQCEDEYIHLQGGYIPELGEGSNRSKTGSGSREHSTGTPTSHASAQGSPF-NVNNSSQNDQVVSLLGEDCLKVGASFEMARQPIKEANLPVAFPVPNVVVGAETEELFGGMLIEDAGSSHDLTNLCQTGGTFPDERIPESSWANQPPSDEFLKGSVPHLEEKPQIPS-RTEVKTVTVKATYKEDIIRFRLPLSSGIIKLEEEVSKRVKLEVGTFDLKYLDDDQEWVLIACDADLQECVEISRSSGRNIIRLLVQDI 958
SW FDQI + +P SPFLLS DQP SP+ FSD + S L L P L +C+P ++ +DK+ LP P+L PLDY DGSC++KERMTQALRYF+ESTEQHVLAQ+WAPVK G R VLTTSGQPFVLG +S+GLHQYRM S MYMFSVDGES+ +LGLPGRVF+QKLPEWTPNVQYYSSKEYPRL++ALHYNV+GTLALPVFEPSG +C+GVLELIMTSQKINYAPEVDK+CKALE ICN+GRQNALAEILE+LT VCETHKLPLAQTWVPCRHRSVL GGGLKKSCSSFDGSCMGQVCMSTTDVA+YVVD HMWGFREACAEHHL KGQGVAGR F+S +SCFCEDIT+F KTEYPLVHYARMFGL+SSFAICLQS++TG D+YILEFF+PPN + +T+LD++L TM+ FRSL+VASGKE + EGRS + I+AS+D DSR+ SVQ +S + P + GE H+D + +++ DA++ + +G + N P SENKD KKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSL VCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEG FTLTSLA SS P VGS+SWP SLNG + QNSP S PSE R + +DGQAE + GGR+ DE IH Q G + ELGEGSNRSKTGSGSRE STGTP S S QGSP + +S QND V+S + E+ +KVG E+A QP E NL F +P+++V + +E FGGMLIEDAGSSHDL +LC DER PE SW N P D K S+ IP+ TE+KTVT+KA YKE+IIRFRL LSSGI+KL+EEV+KR+KLE+GTFD+KYLDDD+EWVLI CD DLQEC++ S+SSG NIIRLLV DI
Sbjct: 25 GSWPFDQIFACNPTSPFLLSSSDQPCSPIGTFSDASNDKPAGNTQSTLDPSLRLADYPRLLACNPDSITESTS-GDDDKRRLPPPILSSAPLDYPDGSCVLKERMTQALRYFQESTEQHVLAQVWAPVKNGGRNVLTTSGQPFVLGSHSNGLHQYRMVSRMYMFSVDGESDEVLGLPGRVFRQKLPEWTPNVQYYSSKEYPRLNHALHYNVRGTLALPVFEPSGQSCVGVLELIMTSQKINYAPEVDKICKALEAVDLKSSEILDHPNTQICNEGRQNALAEILEILTAVCETHKLPLAQTWVPCRHRSVLTCGGGLKKSCSSFDGSCMGQVCMSTTDVAFYVVDAHMWGFREACAEHHLQKGQGVAGRVFASHNSCFCEDITQFCKTEYPLVHYARMFGLTSSFAICLQSTNTGCDDYILEFFLPPNITDSRDQHTLLDSLLVTMRHHFRSLRVASGKEFEYEGRSAQFIKASTDEKLDSRLESVQIPQSMISPPGPDALPNGGEMVHLDSLEQQLMEDFDAISGVNVGG-AGGVQNAVPFSENKDTSKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLRVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFTLTSLATSSYPVAVGSISWPASLNGWNQQNSPGSNPSEFPGEKNELPSRKSLGSDGQAETANQMLGGRVLGNDELIHEQTGILLELGEGSNRSKTGSGSREESTGTPISLGSCQGSPCPGIESSPQNDPVISPIPEEGIKVGELLELAFQPTGELNLSAGFSIPDILVTTQPQEPFGGMLIEDAGSSHDLRSLCPAAEALLDERFPECSWTNPPCPDVVPKESM-------TIPADTTELKTVTIKAAYKENIIRFRLSLSSGIVKLKEEVTKRLKLEMGTFDIKYLDDDREWVLITCDVDLQECMDFSKSSGSNIIRLLVHDI 970
BLAST of DCAR_029869 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PIF8 ((Uncharacterized protein {ECO:0000313|EMBL:PSR91420.1}))
HSP 1 Score: 1187.56 bits (3071), Expect = 0.000e+0
Identity = 615/968 (63.53%), Postives = 728/968 (75.21%), Query Frame = 0
Match: A0A2R6PIF8 ((Uncharacterized protein {ECO:0000313|EMBL:PSR91420.1}))
HSP 1 Score: 1187.56 bits (3071), Expect = 0.000e+0
Identity = 615/968 (63.53%), Postives = 728/968 (75.21%), Query Frame = 0
Query: 47 ASWIFDQ-ISTDPASPFLLS--DQPFSPLWPFSDD-----ASALSAPLTG-----VSLPLLPSCDPQLTYDNKQCSSNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKESTEQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSVDGESN-LLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLALPVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALE----------------ICNKGRQNALAEILEVLTLVCETHKLPLAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVCMSTTDVAYYVVDYHMWGFREACAEHHLLKGQGVAGRSFSSQSSCFCEDITKFSKTEYPLVHYARMFGLSSSFAICLQSSHTGNDNYILEFFMPPNTLEGNKHYTMLDTMLATMKKQFRSLKVASGKELDEEGRSVEVIEASSDGDPDSRIISVQKLESNVIPC---TVTRDGENGHVDLSGKPIIQKSDAVTNIANVAGSGEISNGAPLSENKDAKKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFTLTSLAKSSLPAGVGSVSWPVSLNGSSPQNSPVSIPSEVRAEIN-----NDGQAENIDLPSGGRLQ----CEDEYIHLQGGYIPELGEGSNRSKTGSGSREHSTGTPTSHASAQGSPFNVNNSS-QNDQVVSLLGEDCLKVGASFEMARQPIKEANLPVAFPVPNVVVGAETEELFGGMLIEDAGSSHDLTNLCQTGGTFPDERIPESSWANQPPSDEFLKGSVPHLEEK-PQIPSRTEVKTVTVKATYKEDIIRFRLPLSSGIIKLEEEVSKRVKLEVGTFDLKYLDDDQEWVLIACDADLQECVEISRSSGRNIIRLLVQDIMANLGSSCESSG 970
SW FD S + SPF +S +QP SPLW FSDD A ++ L G P L SC+P+ + Q + +K+ L +P LGL P+DY DG C+IKERMTQALRY KESTEQHVLAQ+WAPVK G RYVLTTSGQPFVL +S+GLHQYRM S+MYMFSVDGES+ +LGLPGRVFQQKLPEWTPNVQYYSSKEYPRL +ALH NVQGTLALPVFEPSG +C+GVLELIMTS +INYAPEVDKVCKALE ICN+GRQ AL EILE+LT+VCETHKLPLAQTWVPCRHRSVLA GGGLKKSCSSFDGSCMGQ+CMSTT+VA+YVVD HMWGFREACAEHHL KGQGVAGR+F+S + CFCEDIT+F KTEYPLVHYARMFGL+SSFAICL+S+HTGND+YILEFF+P + + T+LD++L TMK+ F SL V SGKEL+EEGR V++I+AS D DS + Q +S ++P + E +++ + + + DA + +V G+G N L E K+ KK ERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGI+RWPSRKINKVNRSLS+LKRVIESVQGAEG FTLTS+A SSLP V +SWP S+NGS+ QNS PSE+ E N N ++ D + LQ +E IH + ++PELGEGS++SKTGSGSRE STGTPTSH S QGSP+ N S+ QND VS + E C+K G S E+ QP K+ NL AF +P+ +V E +E FGGMLIEDAGSSHDL NLC G DER PE W N ++ + ++ + E+ PQ +R EVKT+T+KATYKEDIIRFRL L SGI +L+EEV+KR+KLE+GTFD+KYLDDD EWVLIACDADLQEC++IS+SSG N+IR+LV D+ ANLGSSCES+G
Sbjct: 28 GSWPFDHNFSANLTSPFFISSSEQPCSPLWAFSDDNGDKLAGDATSTLAGGGHRLSEYPRLFSCNPE-SVTESQAGAGNKRRLSTPRLGLTPIDYPDGPCVIKERMTQALRYLKESTEQHVLAQVWAPVKNGGRYVLTTSGQPFVLDAHSNGLHQYRMVSLMYMFSVDGESDGVLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLTHALHCNVQGTLALPVFEPSGQSCIGVLELIMTSPRINYAPEVDKVCKALEAVNLKSSEILDHPNTQICNEGRQKALVEILEILTVVCETHKLPLAQTWVPCRHRSVLANGGGLKKSCSSFDGSCMGQICMSTTEVAFYVVDAHMWGFREACAEHHLQKGQGVAGRAFASHNLCFCEDITQFCKTEYPLVHYARMFGLTSSFAICLRSTHTGNDDYILEFFLPHHIRDNRHQRTLLDSILVTMKQHFWSLMVTSGKELEEEGRCVDIIKASMDEKLDSGLQHDQISQSAILPQDPEVLPNAPEMVNLESQEQQLRIEVDAKNSGGSVGGAGGTQNVVSLPEQKNLSKKRERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGITRWPSRKINKVNRSLSRLKRVIESVQGAEGAFTLTSIATSSLPVAVNPISWPASVNGSNQQNSGGYKPSELMEENNESTTLNKPGSQGHDAATNQMLQDGVLHREEVIHERNEFLPELGEGSSQSKTGSGSREESTGTPTSHGSCQGSPYLGNVSTPQNDLTVSPVHEKCIKFGGSSELLCQPEKDLNLSAAFSIPDALVTTEAQEPFGGMLIEDAGSSHDLRNLCPAAGALLDERAPEYGWTNPLGTELEPREAMDNPAERMPQFFARPEVKTMTIKATYKEDIIRFRLSLDSGIARLKEEVAKRLKLEMGTFDIKYLDDDHEWVLIACDADLQECLDISKSSGSNMIRVLVHDVSANLGSSCESTG 994
BLAST of DCAR_029869 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9SMK6 ((protein NLP6 isoform X1 {ECO:0000313|RefSeq:XP_011070353.1}))
HSP 1 Score: 1183.32 bits (3060), Expect = 0.000e+0
Identity = 618/971 (63.65%), Postives = 719/971 (74.05%), Query Frame = 0
Match: A0A6I9SMK6 ((protein NLP6 isoform X1 {ECO:0000313|RefSeq:XP_011070353.1}))
HSP 1 Score: 1183.32 bits (3060), Expect = 0.000e+0
Identity = 618/971 (63.65%), Postives = 719/971 (74.05%), Query Frame = 0
Query: 47 ASWIFDQI------STDPASPFLLS--DQPFSPLWPFSDD------ASALSAPLTGVSLPLLPSCDPQLTYDNKQCSSNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKESTEQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSVDGESNL-LGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLALPVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALE----------------ICNKGRQNALAEILEVLTLVCETHKLPLAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVCMSTTDVAYYVVDYHMWGFREACAEHHLLKGQGVAGRSFSSQSSCFCEDITKFSKTEYPLVHYARMFGLSSSFAICLQSSHTGNDNYILEFFMPPNTLEGNKHYTMLDTMLATMKKQFRSLKVASGKELDEEGRSVEVIEASSDGD----PDSRIISVQKLESNVIPCTVTRDGENGHVD-LSGKPIIQKSDAVTNIANVAGSGEISNGAPLSENKDAKKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFTLTSLAKSSLPAGVGSVSWPVSLNGSSPQNSPVSIPSEVRAEINN---------DGQAENIDLPSGGRLQCEDEYIHLQGGYIPELGEGSNRSKTGSGSREHSTGTPTSHASAQGSPFNVNNSS-QNDQVVSLLGEDCLKVGASFEMARQPIKEANLPVAFPVPNVVVGAETEELFGGMLIEDAGSSHDLTNLCQTGGTFPDERIPESSWANQPPSDEFLKGSVPH-LEEKPQIPSRTEVKTVTVKATYKEDIIRFRLPLSSGIIKLEEEVSKRVKLEVGTFDLKYLDDDQEWVLIACDADLQECVEISRSSGRNIIRLLVQDIMANLGSSCESSG 970
SW DQI +++PASPFLLS +QP SPLW FSDD A+ L S L + +P T ++D+K LPSP +GL+P+D DGSC+IKERMTQALRYFK+ TEQHVLAQ+WAPVK G RY+LTTSGQPFVL NS+GLHQYR+ S+MYMFSVDG+++ LGLPGRVF+QKLPEWTPNVQYYSSKE+PRL++ALHYNV+GTLALPVFEPSG +C+GVLELIMTSQKINYAPEVDKVCKALE ICN+GRQNALAEILE++T+VCETH LPLAQTWVPCRH SVLA GGG KK+CSSFDGSCMGQVCMSTTDVA+YVVD +WGFREACAEHHL KGQGVAGR+F+S + CFC+DIT+F KTEYPLVHYARMFGL SSFAICL+S HTGNDNYILEFF+PP T+LD++L TMK+ F SL+VASGK LD+E RS+E+I+AS D PD S + S +P +GE +D L G+ ++ + +A NV E+ N A E KD KK ERKRGKAEK+ISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQG EGTF LTSLA SS+P VGS+SW +LNG + Q SP S PSE + E D QAE + G R E + + G++P GE SNRS+TGSGSRE STGTPTS S QGSP N +S QND VVS + E +K+G S E+ Q +E NL AFP P+ + EE FGGML+EDAGSSHDL NLC G DE + E SW P +D K + + P+ SR EVKT+T+KATY+EDIIRFR+P+ SGI+KL+EEV+KR+KLE+GTFD+KYLDDD EWVLIACDADLQECV+ISRSSG NIIRLLV DIMANLGSSCESSG
Sbjct: 30 GSWPLDQIFAAAAAASNPASPFLLSNSEQPCSPLWAFSDDNNSGCFAAGAGFRLADSSRILSYAGNPD-TATESAVGNDDRKKLPSPFMGLMPIDNPDGSCIIKERMTQALRYFKDLTEQHVLAQVWAPVKNGGRYMLTTSGQPFVLDPNSNGLHQYRLVSLMYMFSVDGDTDGDLGLPGRVFRQKLPEWTPNVQYYSSKEFPRLNHALHYNVRGTLALPVFEPSGQSCVGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSEILDHQSTQICNEGRQNALAEILEIITVVCETHTLPLAQTWVPCRHGSVLANGGGFKKTCSSFDGSCMGQVCMSTTDVAFYVVDARIWGFREACAEHHLQKGQGVAGRAFASHNVCFCQDITEFCKTEYPLVHYARMFGLKSSFAICLRSKHTGNDNYILEFFLPPTIRSYEDQQTLLDSLLVTMKQHFGSLRVASGKNLDDEWRSIEIIKASVDDKLNLRPDFAATSPPRPSS--VP-----NGETVQLDALEGQVVMTEFNATNIKGNVGSPTEVHNAASGGETKDTGKKPERKRGKAEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGGEGTFNLTSLATSSIPVTVGSISWAANLNGMNQQISPGSGPSEFQEEKKEVSITKAPGADEQAEGSNHILGDR-NVETQKLTHGAGFLP--GECSNRSRTGSGSREESTGTPTSQGSCQGSPCRRNETSPQNDPVVSPIDEHHMKMGGSHELVCQQTREINLSAAFPAPDNFMTV-PEEPFGGMLVEDAGSSHDLRNLCPAGEALFDEHVTEYSWTKPPCADTIPKDRLAAPADHMPRFASRPEVKTITIKATYREDIIRFRIPIDSGIVKLKEEVAKRLKLELGTFDIKYLDDDHEWVLIACDADLQECVDISRSSGSNIIRLLVHDIMANLGSSCESSG 988
BLAST of DCAR_029869 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QJ04 ((Uncharacterized protein {ECO:0000313|EMBL:PSS09372.1}))
HSP 1 Score: 1183.32 bits (3060), Expect = 0.000e+0
Identity = 618/983 (62.87%), Postives = 728/983 (74.06%), Query Frame = 0
Match: A0A2R6QJ04 ((Uncharacterized protein {ECO:0000313|EMBL:PSS09372.1}))
HSP 1 Score: 1183.32 bits (3060), Expect = 0.000e+0
Identity = 618/983 (62.87%), Postives = 728/983 (74.06%), Query Frame = 0
Query: 33 RESLMMMDVDLDLDASWIFDQI-STDPASPFLLS--DQPFSPLWPFSDD---------ASALSAPLTGVSLPLLPSCDPQLTYDNKQCSSNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKESTEQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSVDGESN-LLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLALPVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALE----------------ICNKGRQNALAEILEVLTLVCETHKLPLAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVCMSTTDVAYYVVDYHMWGFREACAEHHLLKGQGVAGRSFSSQSSCFCEDITKFSKTEYPLVHYARMFGLSSSFAICLQSSHTGNDNYILEFFMPPNTLEGNKHYTMLDTMLATMKKQFRSLKVASGKELDEEGRSVEVIEASSDGDPDSRIISVQKLESNVIPC---TVTRDGENGHVDLSGKPIIQKSDAVTNIANVAGSGEISNGAPLSENKDAKKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFTLTSLAKSSLPAGVGSVSWPVSLNGSSPQNSPVSIPSEVRAEIN---------NDGQ--AENIDLPSGGRLQCEDEYIHLQGGYIPELGEGSNRSKTGSGSREHSTGTPTSHASAQGSPFNVNNSS-QNDQVVSLLGEDCLKVGASFEMARQPIKEANLPVAFPVPNVVVGAETEELFGGMLIEDAGSSHDLTNLCQTGGTFPDERIPESSWANQPPSD-EFLKGSVPHLEEKPQIPSRTEVKTVTVKATYKEDIIRFRLPLSSGIIKLEEEVSKRVKLEVGTFDLKYLDDDQEWVLIACDADLQECVEISRSSGRNIIRLLVQDIMANLGSSCESSG 970
RE LM DL LD SW FDQI S +P SPF +S +QPFSPLW FSDD S LS P L SC+P+ + Q + +K+ L +P L L +DY DGSC+IKERMTQALRYFKESTEQHVLAQ+WAPVK G Y+LTTSGQPFVL +S+ LHQYRM S+MYMFSVDGES+ +LGLPGRVFQQKLPEWTPNVQYYSSKEYPRL +ALHYNVQGTLALPVFEPSG +C+GVLELIMTS KINYAPEVDKVCKALE ICN+GRQ AL EILE+LT+VCETHKLP AQTWVPCRHRSVLA GGGLKKSCSSFDGSCMGQ+CMSTT+VA+YVVD HMWGFREACAEHHL KGQGVAGR+F+S +SCFCEDIT+F KTEYPLVHYARMFGL+SSFAICL+SSHTGND+YILEFF+PP+ + T+LD++L T+K+ F SL+VASGKEL+EEGR +E+I+AS + D + S Q +S ++P + E +++ + + + A + V G+G N L E K+ KK ERKRGKAEKSISLEVLQQYF GSLKDAAKSLGVCPTTMKRICRQHGI+RWPSRKINKVNRSLS+LKRVIESVQGAEG FTLTS+A SLP V + WP S+NGS+ QNS PSE+ E N N G A N L G + C +E +H Q G++ ELGEG++RSKTGSGSRE STGTPTSH S QGSP+ N S+ QND +S + E +K+ +S E+ Q KE L AF +P+ ++ E +E FGGMLIEDAGSSH+L NLC F +E+ PE W N ++ E + E P + EVKT+T+KATYKEDIIRFRL L SGI++L+EEV+KR+KLE+GTFD+KYLDDD EWVLIACDADLQECV+IS+SSG N+IRLLV D+ AN SSCESSG
Sbjct: 16 REPLM----DLGLDGSWPFDQIFSANPTSPFFISSAEQPFSPLWAFSDDNGDKLAGDATSTLSGGHRLSEYPRLFSCNPE-SVTESQARTGNKRRLSTPCLELTRIDYPDGSCVIKERMTQALRYFKESTEQHVLAQVWAPVKNGGGYLLTTSGQPFVLDPHSNELHQYRMVSLMYMFSVDGESDGVLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLTHALHYNVQGTLALPVFEPSGQSCIGVLELIMTSPKINYAPEVDKVCKALEAVNLKSSEILDHPNTQICNEGRQKALVEILEILTVVCETHKLPSAQTWVPCRHRSVLANGGGLKKSCSSFDGSCMGQICMSTTEVAFYVVDAHMWGFREACAEHHLQKGQGVAGRAFASHNSCFCEDITQFCKTEYPLVHYARMFGLTSSFAICLRSSHTGNDDYILEFFLPPHIRDHRDQRTLLDSILVTLKQHFWSLRVASGKELEEEGRCIEIIKASMNEKLDLGLQSDQISQSAILPPYTEALPNAPEMMNLESREQQLRIEVGAKNSGGCVGGAGGNQNVVSLPEQKNVSKKPERKRGKAEKSISLEVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGITRWPSRKINKVNRSLSRLKRVIESVQGAEGAFTLTSIATCSLPVAVNPILWPASVNGSNQQNSAGYKPSELMEENNESTTLKKHRNHGHDVATNQMLRDG--VLCREEVVHEQNGFLRELGEGTSRSKTGSGSREESTGTPTSHDSYQGSPYLRNASTPQNDPTISPIHEKYIKIDSSSELLYQSAKELTLSAAFSIPDALITTEVQEPFGGMLIEDAGSSHNLRNLCPAAEAFLEEQPPEYGWTNPLGAELEPREAMANPAERMPLFFAGPEVKTMTIKATYKEDIIRFRLSLDSGIVRLKEEVAKRLKLEMGTFDIKYLDDDHEWVLIACDADLQECVDISKSSGSNMIRLLVHDVSANPASSCESSG 991
BLAST of DCAR_029869 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A061G5G4 ((Transcription factor, putative {ECO:0000313|EMBL:EOY25090.1}))
HSP 1 Score: 1181.78 bits (3056), Expect = 0.000e+0
Identity = 613/970 (63.20%), Postives = 734/970 (75.67%), Query Frame = 0
Match: A0A061G5G4 ((Transcription factor, putative {ECO:0000313|EMBL:EOY25090.1}))
HSP 1 Score: 1181.78 bits (3056), Expect = 0.000e+0
Identity = 613/970 (63.20%), Postives = 734/970 (75.67%), Query Frame = 0
Query: 38 MMDVD-LDLDASWIFDQIS--TDPASPFLLS---DQPFSPLWPFSDDASALSAPLTGVSLPLLPSCDPQLTYDNKQCSSNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKESTEQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSVDGESN-LLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLALPVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALE----------------ICNKGRQNALAEILEVLTLVCETHKLPLAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVCMSTTDVAYYVVDYHMWGFREACAEHHLLKGQGVAGRSFSSQSSCFCEDITKFSKTEYPLVHYARMFGLSSSFAICLQSSHTGNDNYILEFFMPPNTLEGNKHYTMLDTMLATMKKQFRSLKVASGKELDEEGRSVEVIEASSDGDPDSRIISV---QKLESNVIPCTVTRDGENGHVDLSGKPIIQKSDAVTNIANVAGSGEISNGAPLSENKDAKKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFTLTSLAKSSLPAGVGSVSWPVSLNGSSPQNSPVSIPSEVRAEINN---------DGQAENIDLPSGGRLQCEDEYIHLQGGYIPELGEGSNRSKTGSGSREHSTGTPTSHASAQGSPFNVNNSSQNDQVVSLLGEDCLKVGASFEMARQPIKEANLPVAFPVPNVVVGAETEELFGGMLIEDAGSSHDLTNLC-QTGGTFPDERIPESSWANQPPSD-EFLKGSVPHLEEKPQIPSRTEVKTVTVKATYKEDIIRFRLPLSSGIIKLEEEVSKRVKLEVGTFDLKYLDDDQEWVLIACDADLQECVEISRSSGRNIIRLLVQDIMANLGSSCESSG 970
+MD+D LDL++SW DQ + ++P SP ++S +QP SPLW FSD+ SA G +L L +C P+ +N + NDK+ +PSP LGL+PL+ D C+IKERMTQALRYFK+STEQHVLAQ+WAP+K G RYVLTTSGQPFVL +S+GLHQYRM S+MYMFSVDGES+ LGLPGRVF+QKLPEWTPNVQYYSSKEY RLD+ALHYNV+GTLALPVFEPSG +C+GVLELIMTSQKINYAPEVDKVCKALE ICN+ RQNALA+ILE+LT+VCET+KLPLAQTWVPCRHRSVLAYGGGLKKSC+SFDGSCMGQVCMSTTDVA+YVVD HMWGFREAC EHHL KGQGVAGR+F S++SCFC DIT+F KTEYPLVHYARMF L+S FAICL+S++TG+D+Y+LEFF+PP + N+ T+L ++LATMK+ F+SLKVASG EL+++ S+E+IEASSD DSR+ S+ ++S P T GE +D S + +I D T+ NV SG N L +NKD KKSERKRGK EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSL+KLK VIESVQGA+G F LTS+A S LP VGS+SWP SLNGS+ QNSP S PS+ + E + +GQA D GG ++E Q P+L +G+NRSKTGSGSRE S GTPTSH S QGSP + +++ D + S + E C K S E+A QPI E N+P F +P +V E +E FGGML+EDAGSS DL NLC DER PESSW P +D ++ + P +R E++++T+KATY+EDIIRFR+ LSSGI++L+EEV+KR+KLEVGTFD+KYLDDD E VLIACDADLQEC+++SRSSG NIIRL V D MANLGSSCES+G
Sbjct: 23 IMDLDDLDLESSWPLDQPTFLSNPTSPLIISSSSEQPCSPLWAFSDEDKVGSA--AGYNLFL--TCTPKPVNENPK-EDNDKRGIPSPFLGLLPLENPDSYCVIKERMTQALRYFKDSTEQHVLAQVWAPIKSGGRYVLTTSGQPFVLDPHSNGLHQYRMVSLMYMFSVDGESDGQLGLPGRVFRQKLPEWTPNVQYYSSKEYSRLDHALHYNVRGTLALPVFEPSGQSCVGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSDILDPPSTQICNENRQNALAKILEILTVVCETYKLPLAQTWVPCRHRSVLAYGGGLKKSCTSFDGSCMGQVCMSTTDVAFYVVDAHMWGFREACLEHHLQKGQGVAGRAFLSRNSCFCTDITQFCKTEYPLVHYARMFRLTSCFAICLRSTYTGDDDYVLEFFLPPAIADSNEQQTLLRSILATMKQHFQSLKVASGAELEDDEGSIEIIEASSDERLDSRLESIPIPPSVKSPPGPNTSPNRGEL-QLDSSKQQLIVTFDPATDGGNVVASGS-QNPVCLPQNKDV-KKSERKRGKTEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLTKLKHVIESVQGADGAFGLTSIATSPLPVAVGSISWPTSLNGSNQQNSPNSKPSDPQGEKYDLPTCRTPVSNGQALVEDQLLGGMTLSQEELFLQQNALSPDLNKGANRSKTGSGSREESAGTPTSHGSCQGSP-AIESAATKDPLSS-IQEQCFKARGSPELAFQPIGELNIPATFSMPEALVATEPQEPFGGMLVEDAGSSKDLRNLCPSVADVGIDERFPESSWTPPPCTDLALMQAMATFTQTTPHATARQEMRSLTIKATYREDIIRFRISLSSGIVELKEEVAKRLKLEVGTFDIKYLDDDSEMVLIACDADLQECLDVSRSSGSNIIRLSVHDAMANLGSSCESTG 982
BLAST of DCAR_029869 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6IL17 ((Protein nlp7 {ECO:0000313|EMBL:OIS99570.1}))
HSP 1 Score: 1176.39 bits (3042), Expect = 0.000e+0
Identity = 622/979 (63.53%), Postives = 729/979 (74.46%), Query Frame = 0
Match: A0A1J6IL17 ((Protein nlp7 {ECO:0000313|EMBL:OIS99570.1}))
HSP 1 Score: 1176.39 bits (3042), Expect = 0.000e+0
Identity = 622/979 (63.53%), Postives = 729/979 (74.46%), Query Frame = 0
Query: 47 ASWIFDQI------STDPASPFLLS----DQPFSPLWPFSDD--------ASALSAP-LTGVSLPLLPSCDPQLTY--DNKQCS-----SNDKKSLPSPLLGLVPLDYSDGSCLIKERMTQALRYFKESTEQHVLAQIWAPVKKGDRYVLTTSGQPFVLGLNSSGLHQYRMASVMYMFSVDGESN-LLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLDYALHYNVQGTLALPVFEPSGGACLGVLELIMTSQKINYAPEVDKVCKALE----------------ICNKGRQNALAEILEVLTLVCETHKLPLAQTWVPCRHRSVLAYGGGLKKSCSSFDGSCMGQVCMSTTDVAYYVVDYHMWGFREACAEHHLLKGQGVAGRSFSSQSSCFCEDITKFSKTEYPLVHYARMFGLSSSFAICLQSSHTGNDNYILEFFMPPNTLEGNKHYTMLDTMLATMKKQFRSLKVASGKELDEEGRSVEVIEASSDGDPDSRIISVQKLESNVIPCTVTRDGENGHVDLSGKPIIQKSDAVTNIANVA----GSGEISNGAPLSENKDAKKKSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFTLTSLAKSSLPAGVGSVSWPVSLNGSSPQNSPVSIPSEVRAEINNDG------QAENIDLPSGGRLQCEDEYIHLQGGYIPELGEGSNRSKTGSGSREHSTGTPTSHASAQGSPFNVNNSS-QNDQVVSLLGEDCLKVGASFEMARQPIKEANLPVAFPVPNVVVGAETEELFGGMLIEDAGSSHDLTNLCQTGGTFPDERIPESSWANQPPSDEFLKGSVP-HLEEKPQIPSRTEVKTVTVKATYKEDIIRFRLPLSSGIIKLEEEVSKRVKLEVGTFDLKYLDDDQEWVLIACDADLQECVEISRSSGRNIIRLLVQDIMANLGSSCESSG 970
ASW FDQI S +P SPFL+S +QP SPLW FSD+ +ALSAP L S P LTY D++ + ++DKK +P P+LGL PLDY DGSC+IKERMTQALRY KEST + VLAQ+WAPVK G RY+LTTSGQPFVL + +GLHQYRM S+MYMF+VDGE++ +LGLPGRV+++KLPEWTPNVQYYSSKE+PRL++ALHYNV+GTLALPVFEPSG +CLGVLE+IMTSQKINYAPEVD+VCKALE ICN+GRQNAL EILE+LT VCET+KLPLAQTWVPCRHRSVLA GGGLKKSCSSFDGSCMGQVCMSTTDV++YVVD HMWGFREACAEHHL KGQGVAGR+++SQ SCFCEDI F KTEYPLVHYAR+FGLSS FAICL+S++TGND+Y+LEFF+PPN + N +L+++L TMK+ FRSL+VASG+EL+ + SVEVI+AS + SR+ SV +S P + E + + ++ N+A VA G+ E N A SENK A KKSERKRGKAEK+ISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGA+GTF+LTSLA +SLP VGS+SWP +NGS + S E R E +N G +AE + G R+ +E Q G++ EGS+RS+TGSGSRE S GTPTSH S QGSPF N SS QN+ V S E +KVG S E ARQ E NL AF +P + T++LFGGML+EDAGSSHDL NLC G D+R+PE SW N P S+ K V E PQ +R EV +VT+KATY+EDIIRFRL LSSG+ KL+EEV+KR+KLEVGTFD+KYLDDD EWVLIACDADLQECV+ISRSSG N++RLLV DIM NLGSSCESSG
Sbjct: 56 ASWSFDQIFAAAAASNNPMSPFLVSTTASEQPCSPLWAFSDENEDNKPSTGNALSAPSLRFSSYPRF------LTYTGDHEAAAETLSVADDKKRIPPPILGLTPLDYLDGSCIIKERMTQALRYLKESTGERVLAQVWAPVKNGGRYMLTTSGQPFVLDPDCNGLHQYRMVSLMYMFAVDGETDGVLGLPGRVYRKKLPEWTPNVQYYSSKEFPRLNHALHYNVRGTLALPVFEPSGQSCLGVLEIIMTSQKINYAPEVDRVCKALEAVNLKSSEILDHPNTQICNEGRQNALVEILEILTAVCETYKLPLAQTWVPCRHRSVLADGGGLKKSCSSFDGSCMGQVCMSTTDVSFYVVDAHMWGFREACAEHHLQKGQGVAGRAYASQKSCFCEDIRLFCKTEYPLVHYARLFGLSSCFAICLRSTYTGNDDYVLEFFLPPNDGDYNDQLALLNSLLLTMKQHFRSLRVASGEELEHDWGSVEVIKASMEDKLGSRLESVPTTKSLPQPASEVNGREPPDL------MEEQQSVELNVAKVAEGVNGTAEAHNHASFSENKGAGKKSERKRGKAEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGADGTFSLTSLAPNSLPVAVGSISWPAGMNGSPCKASEY---HEERNEFSNHGTPGSHEEAEPSNQMLGSRIIGSEELSPKQNGFV---REGSHRSRTGSGSREESAGTPTSHGSCQGSPFPANESSPQNELVNSPTQESSVKVGGSMEPARQTTGEINLSTAFLMPGPYIPEHTQQLFGGMLVEDAGSSHDLRNLCPAGDAMFDDRVPEYSWTNPPCSNGIAKDQVSLPAENMPQFSTRPEVTSVTIKATYREDIIRFRLLLSSGLFKLKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECVDISRSSGSNVVRLLVHDIMPNLGSSCESSG 1016
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6ZGF0 | E-Value: 0.000e+0, PID: 65.82 | (Uncharacterized protein {ECO:0000313|EMBL:MPA4296... [more] |
| A0A5B6ZG20 | E-Value: 0.000e+0, PID: 66.74 | (Uncharacterized protein {ECO:0000313|EMBL:MPA4296... [more] |
| A0A5B6ZF01 | E-Value: 0.000e+0, PID: 66.98 | (Uncharacterized protein {ECO:0000313|EMBL:MPA4296... [more] |
| A0A5J5AGD1 | E-Value: 0.000e+0, PID: 63.93 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8528... [more] |
| A0A5B6ZIV0 | E-Value: 0.000e+0, PID: 65.65 | (Uncharacterized protein {ECO:0000313|EMBL:MPA4296... [more] |
| A0A2R6PIF8 | E-Value: 0.000e+0, PID: 63.53 | (Uncharacterized protein {ECO:0000313|EMBL:PSR9142... [more] |
| A0A6I9SMK6 | E-Value: 0.000e+0, PID: 63.65 | (protein NLP6 isoform X1 {ECO:0000313|RefSeq:XP_01... [more] |
| A0A2R6QJ04 | E-Value: 0.000e+0, PID: 62.87 | (Uncharacterized protein {ECO:0000313|EMBL:PSS0937... [more] |
| A0A061G5G4 | E-Value: 0.000e+0, PID: 63.20 | (Transcription factor, putative {ECO:0000313|EMBL:... [more] |
| A0A1J6IL17 | E-Value: 0.000e+0, PID: 63.53 | (Protein nlp7 {ECO:0000313|EMBL:OIS99570.1})[more] |
Pages
back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |