MASEAALADHPVVPEQVKEEVHEEANTSEEVEKPKPENLSPAAAMPLPES
EDKIEAQPIETPTVEALGETVEKDIPKTEIVVTPVVPEAEDRVDENRKTE
HAVVVEEKNTVNEEKPIAAVVPTSEETPKYEVLSSLPVVSAESEEKVEVK
PPGTDVQQAIEEVQLSAAEVVPSAEPETVEDKNVEPPVVDEVKIADEPLV
EEKLLSDTPVAKEADIAAKPVVEANIVIEPPVEGKQPQTPVAEEVKIADE
PLVEEKITSDTHNVEEAQIAAEPPVVEENLMTESPQEVKLVETPVIEEVK
IADEPLVEEKTASDTHVEGPEIAAEPPVVEVNLMTESPEEVKLLQTPVIE
EVKIADEPLVEEKNATDTHVEEPEIAAEPPTVEENIMIEPPSGVQLLQTP
VPEEVKIADEPLVEEKITSDTSVVEEPKIASESIVVENNIVTEPPAEVKL
LQTPVVEDVKIADEPLVEEKIASDTHVVEEPEIAAEPPGVEENIVIQPPA
EVKLLQTPAVEVKIADEHIVKEKIANDAHVVEEPEIAAEPPVVEENVVIE
HPAEVKLLQTPVVKEEKIADEPIVEEKIANDTPVVEERELAAEPSVVEEN
IVIEPPAEVKLLQPPVVEEVKINDEPLVEEKSASDSHVVKEEKNAAEPPV
PEENIVIEPPVEVKLLQTPAVEEMKDTMEQLVAEEEVATENPVFEEEKIT
TKDPLLDGKTVTEPSAVEEKIVEIPGVEENNTDNPIVEEVNKTTESPSVI
EEECITVPTLAEEVKNVTEPAVVEEMKQTPVFEEVKNVDDMPDVTEPEAK
KVESYFVTEASELPVQEQKAESVEEKLIEKPKAEGIPESSLEPVDKKEEA
VDFPVKESEPALAKDVGILEPLSIKDDAVESLTDVLEKPQEYVAVETKEC
VHGSADKVEDVKFSKEEEFNGKTPLETTSSVEATLPTKEGQADAEETILG
GEADLVEELPKEKAVTSMKVEKETEAKDVNTDSAQPETKETEEVVKSIST
PAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNGTVADKTSE
QPDETKQEKPEVKVKEDDTVPTDDTKELDDKLTSQDLPKEVVTIKSTQKQ
SNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPKEFWKDLHLGRFIEIAR
GQNRPNKRKSSRHQNMAVHNHVK*
| Relationships |
|---|
| The polypeptide, DCAR_029298, derives from mRNA, DCAR_029298. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5B6ZLT8 ((Putative neurofilament heavy polypeptide-like {ECO:0000313|EMBL:MPA45457.1}))
HSP 1 Score: 151.754 bits (382), Expect = 5.497e-35
Identity = 138/355 (38.87%), Postives = 187/355 (52.68%), Query Frame = 0
Query: 836 IPESSLEPVDKKEEAVD-FPVKESEPALAKDVGILEPLSIKDDAVESLTDVLEKPQEYVAVET---KEC----------------VHGSADKVEDVKFSKEEEFNGKTPLETTSSVEATLPTKEGQADAEETILG------------------GEADLVEELPKEKAVTSMKVEKETEAKDVNTDS-----------AQPETKETEEVVKSISTPAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNGTVADKTSEQPDETKQE--KPEVKVKEDDTVPTD-----DTKELDDKLTSQDLPKEVVTIKSTQKQSNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPK 1134
+PESS+E ++KKEE VD PVKES + KDV LE S K++ E + +V EKPQE V KEC V S DK+ED + KE + + PL T SS + + E Q + ++ + G G A++VE L E+ V K+E E + KDV T+ QPE + E+V SIST E L+ TS+D +LV EN K+ K E V+ +E+ ++G V + T+ E +E K E ++K ++TV TD K+ DD TSQD PKE V K TQKQSN I++KVK +LVKAKKAI GKS N+K+ PSE K
Sbjct: 372 VPESSVEAIEKKEEQVDVLPVKESAAVVIKDVENLEAESKKEETPEPVPEVEEKPQEKSEVAEQVEKECAEVKPKENVEVELVKDVETSTDKLEDTELLKEVKTTKEEPLVTESSDQGSSSNAEAQVETKDAVEGPPTDVAEKAGVEDKDKELGTANVVEGLSNEEVVELGKIEMENKTKDVKTEEDIGEKKITEELNQPEANKVEDVSSSISTTEVIEKSLQGENTSRDFELVAENGKDSIKDETVASLESSKDGEVDEVTTTAAKEQVEEPQKSERELKGEETVQTDAPNPESMKDGDDTETSQDPPKEEVAAKPTQKQSNNIIAKVKQSLVKAKKAIIGKSPNSKSVPSETK 726
Match: A0A4S4DQL1 ((Uncharacterized protein {ECO:0000313|EMBL:THG05381.1}))
HSP 1 Score: 126.331 bits (316), Expect = 3.903e-27
Identity = 158/404 (39.11%), Postives = 216/404 (53.47%), Query Frame = 0
Query: 777 KQTPVFEEVKNVDDMP-------DVTEPEAKKVESY-FVTEASELPVQEQK-AESVEEKLIEKPKAEGIPESSLEPVDKKEEAVDFPVKESEPALAKDVGILEPLSIKDDAVESLTDVLEKPQEYV-AVET--KECVH---GSADKVEDVK-----FSKEEEFNGKTPLETTSSVEATLPTKEGQADA---EETILG------GEADLVEELPKEKAVTSMKVEKETEAKDVNTDSAQPETKETEEVVKSISTPAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNGTVADK-----TSEQPDETKQEKPEVKVKEDDTVPTDDTKELDDKLTSQ-------DLPKEVVTIKSTQKQSNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPKEFWKD 1139
K+ + E V +VDD P + E E +VE+ V E E QEQ E VE++ E+PK PE +E V+K EEA PVKESE +AKD+ I E K++ ES+ +V +KPQE AVE KEC + KVE VK K E+ + P+ T SS + T E Q D E+ I+G ++VE + K++ V KVE E+E K+V T+ E KE E + + + P + +E V+TS+D +LV EN KE K E V+ VET +NG V + T ++P E + KPE +VK ++ V T +T K TS+ D PKE V+ K T KQSN +++KVK +LVKAKKAI GKS N+KT SE K KD
Sbjct: 236 KKEEIQEPVPDVDDKPQEQSEVSEQVEKECAEVETKESVIEKEEETSQEQPPKEVVEKQAEEEPKIADTPEPPVEVVEKTEEAEVLPVKESETVVAKDIEISELEPKKEEIRESMPEVEDKPQEQSEAVEQVEKECAEVEPKESVKVEIVKEEETLADKIEQITKEEPIVTESSDQITSTNVEAQVDTNVVEKEIVGEKEKELNGTEVVEGVSKQEVVEPGKVELESEGKNVETE----ENKEKEGMTEELDKPKV--DKVEDVVTSRDIELVAENGKESIKDETVASVETEKNGEVEGEEVTPTTVKEPVEEPK-KPESEVKGEENVQTSETNLEKVKETSEIAKPDVPDPPKEEVSTKPTSKQSNNLIAKVKQSLVKAKKAIIGKSPNSKTVSSETKGDVKD 632
Match: A0A5J5B288 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8536684.1}))
HSP 1 Score: 115.161 bits (287), Expect = 8.541e-24
Identity = 161/448 (35.94%), Postives = 218/448 (48.66%), Query Frame = 0
Query: 790 DMPDVTEPEAKKVESY-----FVTEASELPVQEQKAESVEEKLIEKPKAEGIPESSLEPVDKKEEAVD-FPVKESEPALAKDVGILEPLSIKD------------DAVESLTDVLEKPQEYVAVE-TKECVHGSADKVE--DVKFSKEEEFNGKTPLE----TTSSVEA---------TLPTKEGQADAEETILGGEADLVEEL---------------------------PKE---KAVTSMKVEKETEAKDVNTDS-----------AQPETKETEEVVKSISTPAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNGTVADKT-----------SEQPDETKQE-KPE----------VKVKEDDTVPTDD------TKELDDKLTSQDLPKEVVTIKSTQKQSNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPK 1134
D V+EP A V+S + + P +E ESVE++ E+PK +P+SS+E V+KKEE V+ PVKESE A+A++V E S K+ D ES + +EK +E V V KE +A +VE +V+ KEE + ++ + SSVEA LP KE + + + EA+ +EL PKE + V K E E EAKDV T+ QPETK+ E+V SIST E LE TS+D +LV EN KE ++E V+ +ET ++G K +E+P E+++E K E VK KE D + D TK++D+K TSQD KE V K TQKQSN I++KVK +LVKAKKAI GKSSN K SE K
Sbjct: 105 DTCSVSEPAADSVKSQPEEQPAIESVEKQPQEEPAIESVEKQPEEQPKIIDVPKSSVEAVEKKEEQVEVLPVKESEAAVAREVESSEAESKKEEIPETEEQVKIVDVSESSVEAVEKKEEQVEVLPVKESEAVAAKEVESSEVESKKEEILEPEEQVKIVDVSESSVEAIEKKEEQGQVLPVKESEVVVAKEVECSEAESKKELTPEPVPELEEKPQEVDQLIEKNCAEIKPKECVEEGVGLGKTEVEKEAKDVKTEEDIGEKRITEELNQPETKKVEDVCSSISTTEVIEKSLEGENTSRDIELVAENVKEGIEAETVTSLETNKDGEAEGKADEVTTATLKEQAEEPQESERELKGEETLQTGETNLVKEKEADEIAKPDIPNPESTKDVDEK-TSQDPLKEGVAAKPTQKQSNNIMAKVKQSLVKAKKAIIGKSSNPKLLSSETK 551
HSP 2 Score: 38.891 bits (89), Expect = 6.375e+0
Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = 0
Query: 1 MASEAALADHPVVPEQVKEEVHEEANT-----------SEEVEKPKPENLSPAAAMPLPESEDKIEAQPIETPTVE 65
MASE ++DH PE+V+++ +EE T S E EK K E SP+ A PL ESE+K E + +E VE
Sbjct: 1 MASETVVSDHSATPERVEKKANEEVKTIEHESVAPSKESGEEEKCKAEE-SPSPAAPLAESEEKFEDKKVEPQVVE 75
Match: A0A5B6ZNA0 ((Putative neurofilament heavy polypeptide-like {ECO:0000313|EMBL:MPA45455.1}))
HSP 1 Score: 110.153 bits (274), Expect = 5.476e-22
Identity = 135/371 (36.39%), Postives = 179/371 (48.25%), Query Frame = 0
Query: 836 IPESSLEPVDKKEE-AVDFPVKESEPALAKDVGILEPLSIKDDAVESLTDVLEKPQE-----------YVAVETKECVH--------GSADKVEDVKFSKEEEFNGKTPLETTSSVEATLPTKEGQADAEETILGG-------------EADLVEELPKEKAVTSMKVEKETEAKDVNTDS-----------AQPETKETEEVVKSISTPAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNG-----------TVADKTSEQPDETKQE-KPEVKVKEDDT---------------VPT-DDTKELDDKLTSQDLPKEVVTIKSTQKQSNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPK 1134
+ ESS+E ++KKEE V PVKESE A+ KDV E S ++ + +V EKPQE VE KE V DKVED + KE + + T SS + T +E Q + +E + ++VE L KE+ V K E E EAKDV T+ QPET + E+V SIST E LE TS+ +L+ EN KE K E V +ET ++ A + +E+P E+++E K E V+ +T VP + TK+ DD TSQD K V KS QKQSN I++KVK +LVKAKKAI GKS N+K+ PSE K
Sbjct: 227 VSESSVEAIEKKEEQVVVIPVKESEAAVVKDVENSEAESKTEETPVPVPEVEEKPQEKSEDAELVEKECAEVEPKESVEVEIVKDEATLTDKVEDTELLKEVQTTKEESPVTESSDQVTSTYEEAQVEIKEDRVECPPDVAENKEKELIATNVVEGLSKEEVVELGKTEVENEAKDVKTEEDIGEKRITEELNQPETNKVEDVSSSISTTEVIEKSLEGENTSRGIELIAENGKESIKDETVISLETSKDREAEEKVDEVTTATAKEQAEEPQESEREVKGEESVQTGETNLVKEKEAGETAKPDVPNPESTKDGDDTKTSQDPLKGEVAAKSIQKQSNNIIAKVKQSLVKAKKAIIGKSPNSKSVPSETK 597
Match: A0A5B6ZPQ7 ((Putative neurofilament heavy polypeptide-like {ECO:0000313|EMBL:MPA45456.1}))
HSP 1 Score: 108.612 bits (270), Expect = 1.483e-21
Identity = 135/372 (36.29%), Postives = 179/372 (48.12%), Query Frame = 0
Query: 835 GIPESSLEPVDKKEE-AVDFPVKESEPALAKDVGILEPLSIKDDAVESLTDVLEKPQEYVAVET---KEC-------------VHGSA---DKVEDVKFSKEEEFNGKTPLETTSSVEATLPTKEGQADAEETILGG-------------EADLVEELPKEKAVTSMKVEKETEAKDVNTDS-----------AQPETKETEEVVKSISTPAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNG-----------TVADKTSEQPDETKQE-KPE----------VKVKEDDTVPTDD------TKELDDKLTSQDLPKEVVTIKSTQKQSNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPK 1134
+ ESS+E ++KKEE V PVKESE + KDV E S ++ + +V EKPQE V KEC V A DKVED + KE + + T SS + T +E Q + +E + ++VE L KE+ V K E E EAKDV T+ QPET + E+V SIST E LE TS+ +L+ EN KE K E V+ +ET ++ A + +E+P E+++E K E VK KE + D TK+ DD TSQD K V KS QKQSN I++KVK +LVKAKKAI GKS+N+K+ SE K
Sbjct: 230 NVSESSVEAIEKKEEQVVVIPVKESEAVVVKDVENSEAESKTEETPVPVPEVEEKPQEKSEVAELVEKECAEVEPKESVEVEIVKDEATLTDKVEDTELLKEVQTTKEESPVTESSDQVTSTYEEAQVEIKEDRVECPPDVAENKEKELIATNVVEGLSKEEVVELGKTEVENEAKDVKTEEDIGEKRITEELNQPETNKVEDVSSSISTTEVIEKSLEGENTSRGIELIAENGKESIKDETVTSLETSKDREAEEKVDEVTTATAKEQAEEPQESEREVKGEESVQTGETNLVKEKEAGGIAKPDFPNPESTKDGDDTKTSQDPLKGEVAAKSIQKQSNNIIAKVKQSLVKAKKAILGKSANSKSLSSETK 601
Match: A0A4S4D1U8 ((Uncharacterized protein {ECO:0000313|EMBL:THF96224.1}))
HSP 1 Score: 104.76 bits (260), Expect = 6.915e-21
Identity = 142/429 (33.10%), Postives = 207/429 (48.25%), Query Frame = 0
Query: 756 TVPTL-AEEVKNVTEPAVVEEMKQT---PVFE-EVKNVDDMPDVTEPEAKKVESYFVTEASELPVQEQK-AESVEEKLIEKPKAEGIPESSLEPVDKKEEAVD-FPVKESEPA-LAKDVGILEPLSIKDDAVESLTDVLEKPQEYVAVETKECVHGSADKVEDVKFSKEEEFNGKTPLETTSSVEATLPTKEGQADAEETILGGEADLVEELPKEKAVTSMKVEKETEAKDVNT------------DSAQPETKETEEVVKSISTPAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNGTVADKTSEQPDETKQE------KPEVKVKEDDTVPTDDTK------------------ELDDKLTSQDLP-KEVVTIKSTQKQSNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPKEFWKD 1139
T P+ +EE +P++ EE+K+T PV + VK+ D P VT+ E ++ E QEQ ESVE++L E+PK + E+S+E V+K EE V+ PVKESE A + KD +P K++ E + +V K QE V A+++E +E + E +VE KE+ V S K+E+E+E KDV T +S +P+T + EE+ +IS E LE TS+D L+ EN KE K E+V+ V+T +NG + K E T +E K + + K ++TV T +T E D TS++ P EV+++K T KQSN ++KVK +LVKAKKAI GKS N+KT SE K +D
Sbjct: 54 TAPSCESEEKYKKIKPSIAEEVKKTDDAPVLDVSVKDKPDSPVVTDNTKSPPEDQPTIDSVEKQPQEQPPVESVEKQLEEQPKMDDTSETSVEAVEKSEEQVEVLPVKESEAAVVVKDTENSKPEPKKEEIPEPVPEVDNKQQEQSEV---------AEQIE-------KELS-------------------------------ETYVVEGQSKEEVVESGKIEQESEGKDVKTGEENEEKKGIAKESDEPKTDKVEELRSAISPTEVTEKCLEGDNTSRDIGLIAENGKESIKDEVVNSVKTKKNGEMEGKVDEVTTSTIKEPIEESQKSKTEAKGEETVQTSETNLEKEKEAGDIAKPEVPTPESTDTKTSKEAPTDEVISVKQTSKQSNNFIAKVKQSLVKAKKAIIGKSPNSKTVSSETKSDIRD 435
Match: A0A2R6R6L7 ((Serine/threonine-protein kinase kinX {ECO:0000313|EMBL:PSS21643.1}))
HSP 1 Score: 105.531 bits (262), Expect = 1.617e-20
Identity = 89/205 (43.41%), Postives = 116/205 (56.59%), Query Frame = 0
Query: 955 LVEELPKEKAVTSMKVEKETEAKDVNTD---------SAQPETKETEEVVKSISTPAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNGTVADK-------TSEQPDETKQEKPEVKVKEDDTVPTDDTKELDDK----LTSQDLP-----KEVVTIKSTQKQSNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPK 1134
+VE L KE V S KVE E+E K+VNT+ S +P+T + E+ SIS AE LE I+++ +LV EN KE K E+V+ VET +NG V +K T E P E + K E +VK + T +T + +K + D P KE V K T KQSNTI+SKVK +LVKAKKAI GKS+N+KT SE K
Sbjct: 441 IVEVLSKEVVVDSGKVELESEGKNVNTEEEREFVTEESNEPKTNKVEDASSSISPTEVAEKSLEGEISTRGIELVAENGKESIKDEMVTSVETEKNGEVDEKVVEVTTPTVEVPAEEPK-KSETEVKGAENAETGETNYVQEKEAGEIAKSDFPTPEPPKEEVLTKPTSKQSNTIMSKVKQSLVKAKKAIIGKSTNSKTVSSEAK 644
Match: A0A7J0F6M2 ((Neurofilament protein-like protein {ECO:0000313|EMBL:GFY94344.1}))
HSP 1 Score: 100.908 bits (250), Expect = 5.686e-19
Identity = 92/209 (44.02%), Postives = 122/209 (58.37%), Query Frame = 0
Query: 955 LVEELPKEKAVTSMKVEKETEAKDVNTD---------SAQPETKETEEVVKSISTPAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNGTVADK-------TSEQP-DETKQEKPEVKVKED-DTVPTDDTKELD-DKLTSQDLP-----KEVVTIKSTQKQSNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPKEFWKD 1139
+VE L KE V S K+E E+E K+V T+ S +P+T + E+V S+ AE LE I+++ +LVVEN KE K E V+ VET +NG V +K T E P +E K+ + EVK E+ +TV T+ KE + ++ D P KE V K T KQSNTI+SKVK +LVKAKKAI GKS+N+KT SE K KD
Sbjct: 468 VVEVLSKEVIVDSGKIELESEGKNVETEEEKKFVTEESNEPKTNKVEDV----SSSEVAEKSLEGEISTRGIELVVENGKESIKDETVTSVETEKNGEVDEKVVEVTTPTVEVPAEEPKKSETEVKGAENAETVETNYVKEKEAGEIAKSDFPTPEPPKEEVLTKPTSKQSNTIMSKVKQSLVKAKKAIIGKSTNSKTVSSEAKGDVKD 672
Match: A0A5B6ZN10 ((Putative neurofilament heavy polypeptide-like {ECO:0000313|EMBL:MPA45454.1}))
HSP 1 Score: 97.8265 bits (242), Expect = 3.185e-18
Identity = 89/220 (40.45%), Postives = 116/220 (52.73%), Query Frame = 0
Query: 954 DLVEELPKEKAVTSMKVEKETEAKDVNTDS-----------AQPETKETEEVVKSISTPAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNG-----------TVADKTSEQPDETKQE-KPE----------VKVKEDDTVPTDD------TKELDDKLTSQDLPKEVVTIKSTQKQSNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPK 1134
++VE L KE+ V K E E EAKDV T+ QPET + E+V SIST E LE TS+ +L+ EN KE K E V+ +ET ++ A + +E+P E+++E K E VK KE + D TK+ DD TSQD K V KS QKQSN I++KVK +LVKAKKAI GKS+N+K+ SE K
Sbjct: 312 NVVEGLSKEEVVELGKTEVENEAKDVKTEEDIGEKRITEELNQPETNKVEDVSSSISTTEVIEKSLEGENTSRGIELIAENGKESIKDETVTSLETSKDREAEEKVDEVTTATAKEQAEEPQESEREVKGEESVQTGETNLVKEKEAGGIAKPDFPNPESTKDGDDTKTSQDPLKGEVAAKSIQKQSNNIIAKVKQSLVKAKKAILGKSANSKSLSSETK 531
Match: A0A6A4KUN3 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9446737.1}) (Fragment))
HSP 1 Score: 92.8189 bits (229), Expect = 1.673e-16
Identity = 109/288 (37.85%), Postives = 140/288 (48.61%), Query Frame = 0
Query: 905 ADKVEDVKFSKEEEFNGKTPLETTSS-------VEATLPTKEGQADAEETI-------------LGGEADL----VEELPKEKAVTSMKVEKETEAKDVNTDS----AQPETKETEEVVKSISTPAAAENILEAVITSKDAKLVVENEKEDKKSELVSPVETYRNGT-------VADKTSEQPDETKQEKPEVKVKEDDTVPTDDT------------------KELDDKLTSQDLPKEVVTIKSTQKQSNTILSKVKNTLVKAKKAITGKSSNTKTPPSEPKEFWKD 1139
ADK+ED KEEE + P+ T SS VEA + E + T+ GG L VE LPKE+ V S KVE ETE K T+ + T+E++E V +S E LE V TS+D +L EN K K E V+PV T +NG VA T +P E +E E +VK ++ V T +T K+ DD +TS + PKE V K + KQS+ I+SKVK +LVKAKKAI GKS N KT SE K +D
Sbjct: 438 ADKIED-PVVKEEETAKEEPVVTESSDQVTPTIVEAQIDNTEDGGEKSPTVVAESTSIADKGKEFGGTEVLPKEEVEVLPKEEVVESGKVELETEGKSAKTEEEKEVGKAVTEESDEPV--VSATEVTEKALEKVNTSRDIELPAENGKASVKDETVTPVGTEKNGVDEGKVEEVATTTVGEPVEEPKES-ETEVKGEEAVQTGETTLEQEKEGKPDVPIVEPAKDGDDTITSGEPPKEEVPAKPSSKQSHNIISKVKQSLVKAKKAILGKSPNPKTVSSEAKGDVQD 721
| Match Name | Stats | Description |
|---|---|---|
| A0A5B6ZLT8 | E-Value: 5.497e-35, PID: 38.87 | (Putative neurofilament heavy polypeptide-like {EC... [more] |
| A0A4S4DQL1 | E-Value: 3.903e-27, PID: 39.11 | (Uncharacterized protein {ECO:0000313|EMBL:THG0538... [more] |
| A0A5J5B288 | E-Value: 8.541e-24, PID: 35.94 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8536... [more] |
| A0A5B6ZNA0 | E-Value: 5.476e-22, PID: 36.39 | (Putative neurofilament heavy polypeptide-like {EC... [more] |
| A0A5B6ZPQ7 | E-Value: 1.483e-21, PID: 36.29 | (Putative neurofilament heavy polypeptide-like {EC... [more] |
| A0A4S4D1U8 | E-Value: 6.915e-21, PID: 33.10 | (Uncharacterized protein {ECO:0000313|EMBL:THF9622... [more] |
| A0A2R6R6L7 | E-Value: 1.617e-20, PID: 43.41 | (Serine/threonine-protein kinase kinX {ECO:0000313... [more] |
| A0A7J0F6M2 | E-Value: 5.686e-19, PID: 44.02 | (Neurofilament protein-like protein {ECO:0000313|E... [more] |
| A0A5B6ZN10 | E-Value: 3.185e-18, PID: 40.45 | (Putative neurofilament heavy polypeptide-like {EC... [more] |
| A0A6A4KUN3 | E-Value: 1.673e-16, PID: 37.85 | (Uncharacterized protein {ECO:0000313|EMBL:KAE9446... [more] |
Pages
back to top| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |