MSSSLLRLRRATLSLSSVFLNKPISSLSSTLPLTPSNPTPTIPTVVSHFR
AFRASNIYLARPRNAFQNDNDDFKIGPDDILFEGCDYNHWLITMDFPKDP
RPSSEEMVQTYVETAAKIFGSVEEAKKKIYACSTTTYQGFQVECSEETSK
KFEGLPGVVFILPDSYIDPVNKQYGGDKYDNGFITPRPPPTQYGRTGGRF
GDRNRDSNRPMRPRGEFNQGNPAYDNRSNTVGSAGNFGPTQHPPPQQNYG
PPGVAPMNNSAGGQENYQGYRRDQMSPNQGNYNQGQRGNLYPQGPSVPPV
NLNNNAPPPQPPQSGNFSQGVPGQPPVNFNNNAPPPQSPQSGNFGRGAPG
SYNQGAPGSYNQGAPGSYGQGAPGSYGQGAPGSYGQGAPGNYSQGAPGSY
RQVAPSSYGQGSPGSYVQGAAGSYTQGASGNHRQGASGYEQDAGNYGQGG
GGYFGQAAAGSLGHGGGGQEKFPNFGRPDSVHEENQRFSQGEQMDGMRQV
PK*
| Relationships |
|---|
| The polypeptide, DCAR_029262, derives from mRNA, DCAR_029262. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: F6HK80 ((Uncharacterized protein {ECO:0000313|EMBL:CCB55083.1}))
HSP 1 Score: 327.02 bits (837), Expect = 2.553e-105
Identity = 200/401 (49.88%), Postives = 246/401 (61.35%), Query Frame = 0
Query: 1 MSSSLLRLRRATLSLSSVFLNK-PISSLSSTLPLTPSNPTPTIPTVVSHFRAFRASNIYLARPRNAFQNDNDDFKIGPDDILFEGCDYNHWLITMDFPKDPRPSSEEMVQTYVETAAK-IFGSVEEAKKKIYACSTTTYQGFQVECSEETSKKFEGLPGVVFILPDSYIDPVNKQYGGDKYDNGFITPRPPPTQYGRTGGRFGDRNRDSNRPMRPR----GEFNQGNPAYDNRSNTVGSAGNFGPTQHPPPQQNYGPPGVAPM-----NNSAGGQENYQGYRRDQMSPNQGNYNQGQRGNLYPQGPSVPPVNLNNNAPPPQPPQSGNFSQGVPGQPPVNFNNNAPPPQSPQSGNFGRGAPGSYNQGAPGSYNQGAPGSYGQGA---PGSYGQGAPGSYGQG 387
M+ LRLR+A +L+ + ++ P+ + + + +P R FR+S I+L+ R +F N N++ IGPD ILFEGCDYNHWLITMDFPKDP+P+ EEMV+TYV+T AK + SVEEAK K+YACSTTTY GFQ +EE S+KF GLPGVVFILPDSYI+P K+YGGDKY NG I PRPPP QYGRTGGR+GDRNR++ RP R QGNP YDNR + G GN+G Q+ PPQQNYGP G PM + + GG++ YQG RRD M P QGNYNQGQ+GN +PQ + +FSQG N APP Q RG +YN G+Y QG GSYGQG P YGQ G +G+G
Sbjct: 1 MALYSLRLRQALKTLTPLLGHRTPLPQVCALPAVESCGVIRLLPATNLQSRPFRSSPIWLSSSR-SFNNQNEE--IGPDTILFEGCDYNHWLITMDFPKDPKPTPEEMVETYVQTLAKGLNISVEEAKLKMYACSTTTYTGFQAVMTEEESEKFRGLPGVVFILPDSYINPATKEYGGDKYINGTIIPRPPPVQYGRTGGRYGDRNRNTERPRYDRQGGPMPNRQGNPPYDNRGSMQGDGGNYGAPQNYPPQQNYGPAGQGPMPMSNRDYAHGGRDTYQGERRDTMPPYQGNYNQGQQGNYHPQ-------------------ERRDFSQGAQ-------RNYAPPDQRDV-----RGDNRNYNPQHSGNYGQGTGGSYGQGMGSGPSGYGQAQQG-HGEG 366
HSP 2 Score: 36.965 bits (84), Expect = 8.616e+0
Identity = 37/109 (33.94%), Postives = 53/109 (48.62%), Query Frame = 0
Query: 390 GNYSQGAPGSYRQVAPSSYGQGSPGSYVQGAAGSYTQGASGNHRQGASGYEQDAGNYGQGGGGYFGQAAAGSLGHGGGGQEKFPNFGRPDSVHEENQRFSQGEQMDGMR 498
GNY+QG G+Y + QG+ +Y A + G++R Q +GNYGQG GG +GQ +G G G +G+ H E QRFSQ +Q + M+
Sbjct: 288 GNYNQGQQGNYHPQERRDFSQGAQRNY----APPDQRDVRGDNRNYNP---QHSGNYGQGTGGSYGQG----MGSGPSG------YGQAQQGHGEGQRFSQVDQRNDMQ 379
Match: A0A5J5AZU3 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8536563.1}))
HSP 1 Score: 317.39 bits (812), Expect = 1.191e-100
Identity = 209/408 (51.23%), Postives = 251/408 (61.52%), Query Frame = 0
Query: 5 LLRLRRATLSLSSVFLNKPI-------SSLSSTLPLTPSNPTPTIPTVVSHF------RAFRASNIYLARPRNAFQNDNDDFKIGPDDILFEGCDYNHWLITMDFPKDPRPSSEEMVQTYVETAAKIFGSVEEAKKKIYACSTTTYQGFQVECSEETSKKFEGLPGVVFILPDSYIDPVNKQYGGDKYDNGFITPRPPPTQYGRTGGRFGDRNRDSNRPMRPRGEFNQGNPAYDNRSNTVGSAGNFGPTQHPPPQQNYGPPGV------APMNNSAGGQENYQGYRRDQMSPNQGNYNQGQRGNLYPQG-PSVPPVNLNNNAPPPQPPQSGNFSQGVPGQPPVNFNNNAPPPQSPQSGNFGRGAPGSYNQGAPGSYNQGAPGSYGQGAPGS-YGQGAPGS-YGQGAPG 390
RLRRA ++LSS +N+ I +S S +L NP T H R FR+S I LA PR + N+N++ +IGPD ILFEGCDYNHWLITM+FPKDP+P+ EEMV+TYV+T AK+ GSVEEAKK++YACSTTTY GFQ SEETS+KF+GLPGVVF+LPDSYIDP NK+YGGDKY NG I PRPPP QYG+ R+ DRNRD R + QGN AY N+ T G N+ Q+ PQQN+GPPG PMNN+ GG++ YQG RRD M Q +Y+QG+RGN YPQG PP + N A PQ GN+G+GA G+Y QG G+Y QG G Y QGA G YGQGA G YGQGA G
Sbjct: 4 CFRLRRA-VTLSSTLINRQILSSAIPAASASPSLSSVTLNPEERDLTQSPHLHLPFQSRLFRSSTISLAPPRQPYSNNNNE-EIGPDTILFEGCDYNHWLITMEFPKDPKPTPEEMVETYVQTLAKVVGSVEEAKKRMYACSTTTYTGFQAVMSEETSEKFKGLPGVVFVLPDSYIDPANKEYGGDKYINGTIIPRPPPIQYGQR--RYADRNRDRQNHSRGPPPYQQGNSAY-NQGPTHGDTRNYREQQNSVPQQNFGPPGTGERRDPMPMNNAPGGRDTYQGDRRDPMPSYQASYSQGERGNYYPQGRRDFPPGDNRNYA-------------------------------HPQGGNYGQGAVGTYGQGTGGAYGQGTGGLYRQGAAGGPYGQGAAGGPYGQGAAG 375
Match: A0A7J7HJ18 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5951984.1}))
HSP 1 Score: 304.679 bits (779), Expect = 1.982e-95
Identity = 208/420 (49.52%), Postives = 249/420 (59.29%), Query Frame = 0
Query: 1 MSSSLLRLRRATLSLSSVFL--NKPISSLSSTLPL--------TPSNPTPTIPTVVSH-----FRAFRASNIYLARPRNAFQNDNDDFKIGPDDILFEGCDYNHWLITMDFPKDPRPSSEEMVQTYVETAAKIFGSVEEAKKKIYACSTTTYQGFQVECSEETSKKFEGLPGVVFILPDSYIDPVNKQYGGDKYDNGFITPRPPPTQYGRTGGRFGDRNRDSNRPMRPRG----EFNQGNPAYDNRSNTVGSAGNFGPTQHPPPQQNYGP-PGVAPMNNSAGGQE----NYQGYRRDQMSPNQGNYNQGQRGNLYPQGPSVPPVNLNNNAPPPQPPQSGNFSQGVPGQPPVNFNNNAPPPQSPQSGNFGRGAPGSYNQGAPGS-YNQGAPGSYGQGAPGSYGQGAPGSYGQGAPGNYSQG 395
M+ S LRLRRA LS+SS + + PIS+L S P NP+ + H FR FR+S+I L+ R ++N+N++ +IGPD ILFEGCDYNHWLITMDFPKDP PS EEM++TY++T AK+ GS EEAK+K+YA STTTY GFQ +EE S+KF GLPGVVFILPDSYIDPVNK+YGGDKY+NG ITPRPPP QYGR GGR+GDRNRD NR RPRG QGNPA G NFG Q+ P Q NYGP PMNN+AGG++ N RD M Q NY+Q ++G PQG +PP + PP Q G+ N N PPQ G G G G + + GQGA G+YGQ GQGA GNY QG
Sbjct: 3 MALSSLRLRRA-LSISSSLIKHHTPISTLPSISTSSSPPSLTSNPQNPSFDLLQPFQHHLPFQFRHFRSSSIQLSSARTPYRNNNNNDEIGPDTILFEGCDYNHWLITMDFPKDPAPSREEMIETYLQTLAKVVGSYEEAKQKMYAFSTTTYHGFQCLVTEEMSEKFRGLPGVVFILPDSYIDPVNKEYGGDKYENGVITPRPPPLQYGRQGGRYGDRNRDFNR-NRPRGPNPMPNQQGNPA----GPMHGDTRNFGQQQNYPMQPNYGPGRDPMPMNNAAGGRDSMPLNNAPGGRDPMPSYQANYSQNEQGYYNPQGGRIPPEQ-RDYMPPGQRDLRGD-------------NRNYGPPQGVAHGQGAGGDYGKTRTRCRGELWTRTRNYGQGQGAGGNYGQ------GQGAGGNYGQG 396
Match: A0A2N9HI58 ((Uncharacterized protein {ECO:0000313|EMBL:SPD13926.1}))
HSP 1 Score: 301.212 bits (770), Expect = 1.639e-94
Identity = 222/475 (46.74%), Postives = 270/475 (56.84%), Query Frame = 0
Query: 1 MSSSLLRLRRATLSLSSVFLNKPISSLSSTLPLTPSN------------PTPTIPTVVSHFRAFRASNIYLARPRNAFQNDNDDFKIGPDDILFEGCDYNHWLITMDFPKDPRPSSEEMVQTYVETAAK-IFGSVEEAKKKIYACSTTTYQGFQVECSEETSKKFEGLPGVVFILPDSYIDPVNKQYGGDKYDNGFITPRPPPTQYGRTGGRFGDRNRDSNRPMRPRGEFNQGNPAYDNRSNTVGSAGNFGPTQHPPPQQNYGPPGV------APMNN---SAGGQENYQGYRRDQMSP-NQGNYNQGQRGNLYPQGPSVPPVNLNNNAPPPQPPQSGNFS---------QGVPGQPPVNFNNNAPPPQSPQSGNFGRGAPGSYNQGAPGSYNQGAPGSYGQGAPGSYGQGAP--------GSYGQGAPGNYSQGAPGSYRQVAPSSYGQGSPGSYVQGAAGSYTQGASGNHRQG 435
M+ LRLRR SLS+ L++ +++ + LP T ++ PT T +++ FR++ I L R+ + N+ND+ IGPD ILFEGCDYNHWLI MDFPKD RP+ EEMV+TY ET AK + SVEEAK K+YACSTTTY GFQ +EE S KF+GLPGV+F+LPDSYIDPVNK+YGGDKY NG I PRPPP QYGR G R DR + + M NQ P+YDN++ G N G Q+ PPQQNYGP G PMNN + GG E YQ R + M+P + GNYNQGQ GN YPQ P N PP GNF QGVP V+ N+ P Q G +G+G N G P QGA +YG G YGQGA G+YGQGA G QG G+YRQ A S YGQ PG G ++QG + QG
Sbjct: 1 MALYSLRLRRTLTSLST--LHRSLTAAPTFLPSTSTSTTTSISTPLFHFPTSTSFNLLAPSHPFRSTTIALYSARSTYNNNNDE--IGPDTILFEGCDYNHWLIVMDFPKDNRPAPEEMVRTYEETCAKGLNISVEEAKLKMYACSTTTYVGFQAVMTEEESNKFQGLPGVIFVLPDSYIDPVNKEYGGDKYINGTIIPRPPPIQYGRQG-RPRDRRGNQGQTMY----NNQSRPSYDNQAAFQGDGRNRGAPQNYPPQQNYGPQGQGERRDPMPMNNRNYAPGGTEGYQSGRGESMAPSHHGNYNQGQ-GNNYPQEHRDFP---QGNQSAYVPPGKGNFMEDNRNSGPPQGVPYGQGVDRNSGPP-----QGGPYGQGV--DRNSGPP----QGADRNYGPPQGGPYGQGADRNYGPPQGGTYGQGAVGYQGQGTDGAYRQGATSGYGQSYPG---HGEGQKFSQGGEQRNWQG 448
Match: A0A2N9HZP2 ((Uncharacterized protein {ECO:0000313|EMBL:SPD17555.1}))
HSP 1 Score: 301.212 bits (770), Expect = 4.644e-94
Identity = 229/485 (47.22%), Postives = 279/485 (57.53%), Query Frame = 0
Query: 1 MSSSLLRLRRATLSLSSVFLNKPISSLSSTLPLTPSN------------PTPTIPTVVSHFRAFRASNIYLARPRNAFQNDNDDFKIGPDDILFEGCDYNHWLITMDFPKDPRPSSEEMVQTYVETAAK-IFGSVEEAKKKIYACSTTTYQGFQVECSEETSKKFEGLPGVVFILPDSYIDPVNKQYGGDKYDNGFITPRPPPTQYGRTGGRFGDRNRDSNRPMRPRGEFNQGNPAYDNRSNTVGSAGNFGPTQHPPPQQNYGPPGV------APMNN---SAGGQENYQGYRRDQMSP-NQGNYNQGQRGNLYPQGPSVPPVNLNNNAPPPQPPQSGNFS---------QGVPGQPPVNFNNNAPPPQSPQSGNFGRGAPGSYNQGAPGSYNQGAPGSYGQGAPGSYGQGAPGSYGQGAPGNYSQGAPGSYRQVAPSSYG--QGSPGSYV-QGAAGSYTQGASGNHRQGA-SGYEQDAGNYGQG 449
M+ LRLRR SLS+ L++ +++ + LP T ++ PT T +++ FR++ I L R+ + N+ND+ IGPD ILFEGCDYNHWLI MDFPKD RP+ EEMV+TY ET AK + SVEEAK K+YACSTTTY GFQ +EE S KF+GLPGV+F+LPDSYIDPVNK+YGGDKY NG I PRPPP QYGR G R DR + + M NQ P+YDN++ G N G Q+ PPQQNYGP G PMNN + GG E YQ R + M+P + GNYNQGQ GN YPQ P N PP GNF QGVP V+ N+ P Q G +G+G N G P QG P YGQGA +YG G YGQGA NY G Y Q A +YG QG G+ + +GA G QG G +RQGA SGY Q +G+G
Sbjct: 1 MALYSLRLRRTLTSLST--LHRSLTAAPTFLPSTSTSTTTSISTPLFHFPTSTSFNLLAPSHPFRSTTIALYSARSTYNNNNDE--IGPDTILFEGCDYNHWLIVMDFPKDNRPAPEEMVRTYEETCAKGLNISVEEAKLKMYACSTTTYVGFQAVMTEEESNKFQGLPGVIFVLPDSYIDPVNKEYGGDKYINGTIIPRPPPIQYGRQG-RPRDRRGNQGQTMY----NNQSRPSYDNQAAFQGDGRNRGAPQNYPPQQNYGPQGQGERRDPMPMNNRNYAPGGTEGYQSGRGESMAPSHHGNYNQGQ-GNNYPQEHRDFP---QGNQSAYVPPGKGNFMEDNRNSGPPQGVPYGQGVDRNSGPP-----QGGPYGQGV--DRNSGPP----QGGP--YGQGADRNYGPPQGGPYGQGADRNYGPPQGGPYGQGADRNYGPPQGGTGAVMGKGAVGYQGQGTDGAYRQGATSGYGQSYPGHGEG 459
Match: A0A4S4D0C4 ((Uncharacterized protein {ECO:0000313|EMBL:THF94485.1}))
HSP 1 Score: 301.982 bits (772), Expect = 5.058e-94
Identity = 243/567 (42.86%), Postives = 289/567 (50.97%), Query Frame = 0
Query: 1 MSSSLLRLRRATLSLSSVFL--NKPISSLSSTLPL--------TPSNPTPTIPTVVSH-----FRAFRASNIYLARPRNAFQNDNDDFKIGPDDILFEGCDYNHWLITMDFPKDPRPSSEEMVQTYVETAAKIFGSVEEAKKKIYACSTTTYQGFQVECSEETSKKFE------------------------------------------GLPGVVFILPDSYIDPVNKQYGGDKYDNGFITPRPPPTQYGRTGGRFGDRNRDSNRPMRPRG----EFNQGNPAYDNRSNTVGSAGNFGPTQHPPPQQNYGP-PGVAPMNNSAGGQE----NYQGYRRDQMSPNQGNYNQGQRGNLYPQGPSVPPVNLNNNAPPPQPPQSGNFSQGVPGQPPVNFNNNAPPPQSPQSGNFGRGAPGSYNQGAPGSYNQGAPGSYGQGAPGSYGQGAPGSYGQGAPGNYSQGAPGSYRQVAPSSYGQGSPGSYVQGAAGSYTQG----ASGNHRQGASGYEQDAGNYGQGGGGYFGQAAAGSLGHGGGGQEKFPNFGRPDSVHEENQRFSQGEQMDGM 497
M+ S LRLRRA LS+SS + + PIS+L S P NP+ + H FR FR+S+I L+ R ++N+N++ +IGPD ILFEGCDYNHWLITMDFPKDP PS EEM++TY++T AK+ GS EEAK+K+YA STTTY GFQ +EE S+KF GLPGVVFILPDSYIDPVNK+YGGDKY+NG ITPRPPP QYGR GGR+GDRNRD NR RPRG QGNP Y N+ G NFG Q+ P Q NYGP PMNN GG++ N RD M Q NY+Q ++G PQG +PP + PP Q G+ N N PPQ G QGA G Y Q GQGA G+YGQ GQG NY QG Q A +YGQG QGA G+Y QG + G + + GNYGQG G GQ GH +P H E RF+Q EQ M
Sbjct: 3 MALSSLRLRRA-LSISSSLIKHHTPISTLPSISTSSSPPSLTSNPQNPSFDLLQPFQHHLPFQFRHFRSSSIQLSSARTPYRNNNNNDEIGPDTILFEGCDYNHWLITMDFPKDPAPSREEMIETYLQTLAKVVGSYEEAKQKMYAFSTTTYHGFQCLVTEEMSEKFRGLPGVVFILPDSYIDPVNKEYGGRNFILLQFYSMFPPVSIHIGLPGVVFILPDSYIDPVNKEYGGDKYENGVITPRPPPLQYGRQGGRYGDRNRDFNR-NRPRGPNPMPNQQGNPVYSNQGPMHGDTRNFGQQQNYPMQPNYGPGRDPMPMNNVPGGRDPMPLNNAPGGRDPMPSYQANYSQNEQGYYNPQGGRIPPEQ-RDYMPPGQRDLRGD-------------NRNYGPPQGVAHG-----------QGAGGDYGQ------GQGAGGNYGQ------GQGTGRNYGQG------QGAGGNYGQG------QGAGGNYGQGQGVGGNYGQGAGGNYGQGAGGNYGQGVGSSHGQETGSGYGH------SYPG-------HGEEHRFAQVEQRSNM 505
Match: A0A5B6Z1I4 ((Uncharacterized protein {ECO:0000313|EMBL:MPA37905.1}))
HSP 1 Score: 296.204 bits (757), Expect = 6.183e-93
Identity = 178/349 (51.00%), Postives = 226/349 (64.76%), Query Frame = 0
Query: 1 MSSSLLRLRRA-TLSLSSVFLNKPISSL-------SSTLPLTPSNPTPTIP-TVVSHF----RAFRASNIYLARPRNAFQNDNDDFKIGPDDILFEGCDYNHWLITMDFPKDPRPSSEEMVQTYVETAAKIFGSVEEAKKKIYACSTTTYQGFQVECSEETSKKFEGLPGVVFILPDSYIDPVNKQYGGDKYDNGFITPRPPPTQYGRTGGRFGDRNRDSNRPMRPRG--EFNQGNPAYDNRSNTVGSAGNFGPTQHPPPQQNYGPPG------VAPMNNSAGGQENYQGYRRDQMSPNQGNYNQGQRGNLYPQG-PSVPPVNLNNNAPPPQ----------PPQSGNF 317
M+ LRLRRA TLS S + +P S++ S++ NP P + T H R FR+S I L+RP ++ N+N++ +IGPD ILFEGCDYNHWLITMDFPKDP+P+++EMV+TYV+T AK+ GSVEEAKK++YACSTTTY GFQ SEE S+KF+GLPGVVFILPDSYID VNK+YGGDKY +G I PR P GR+ D NRD R RPRG + QGN YDN+ + G N+G Q+ P QQNYGP G P+NN+ GG++ +QGYRRD + Q NYNQG+RGN YPQG PP + ++ P + PPQ G++
Sbjct: 1 MALCSLRLRRALTLSSSLIKHQRPFSAVPAISASSLSSVTHNHRNPRPDLTQTHQLHIPFQSRLFRSSTISLSRPGPSYNNNNNE-EIGPDTILFEGCDYNHWLITMDFPKDPKPTADEMVETYVQTLAKVVGSVEEAKKRMYACSTTTYTGFQAVMSEEMSEKFKGLPGVVFILPDSYIDSVNKEYGGDKYIDGVIIPR--PPPVPYKPGRYNDSNRD--RQNRPRGPPPYQQGNSTYDNQRSMHGDTRNYGAQQNSPLQQNYGPAGPGERRVPMPVNNAPGGRDTHQGYRRDPIPSYQANYNQGERGNYYPQGRRDFPPGDQRDHVSPEKRNFGDNGNYAPPQVGSY 344
Match: A0A6J1H0A0 ((multiple organellar RNA editing factor 1, mitochondrial-like {ECO:0000313|RefSeq:XP_022957345.1}))
HSP 1 Score: 288.115 bits (736), Expect = 2.591e-90
Identity = 175/324 (54.01%), Postives = 220/324 (67.90%), Query Frame = 0
Query: 1 MSSSLLRLRRATLSLSSVFLNKPISSLS-----STLPLTPSNPTPTI--PTVVSHFRAFRASNIYLARPRNAFQNDNDDFKIGPDDILFEGCDYNHWLITMDFPKDPRPSSEEMVQTYVETAAK-IFGSVEEAKKKIYACSTTTYQGFQVECSEETSKKFEGLPGVVFILPDSYIDPVNKQYGGDKYDNGFITPRPPPTQYGRTGGRFGDRNRDSNRPMRPRGEF----NQGNPAYDNRSNTVGSAGNFGPTQHPPPQ---QNYGPPGV------APMNNSA-GGQENYQGYRRDQMSPNQGNYNQ-GQ-------RGNLYPQG 294
M+ LRLRR TLS SVF ++ +SS S ++L L ++P P ++S R+S++ L+ R++F ++ +D KIGPD ILFEGCDYNHWLITM+FPKDP+P+ EEMV+TY ET AK + SVEEAKKK+YACSTTTYQGFQ +EE S+KF GLPGVVFILPDSYIDPVNK+YGGDKY +G I PRPPP QYGR GGR+ +RNR+ ++P RG QGN ++ + + G NFGP+Q+ PQ QNYGPPG +PMNN A G++ YQG R M+ NQGNYNQ GQ +GN PQG
Sbjct: 1 MAVHSLRLRR-TLSALSVF-HRHVSSTSAVSTQTSLSLLFTSPVSLSKSPAMISPCWPLRSSSMALSY-RSSFGSNTEDDKIGPDTILFEGCDYNHWLITMEFPKDPKPTPEEMVRTYEETCAKGLNISVEEAKKKMYACSTTTYQGFQAVMTEEESEKFRGLPGVVFILPDSYIDPVNKEYGGDKYIDGTIIPRPPPVQYGRQGGRYRERNRNPDQPRYDRGNRPAPNWQGNASFGQQGSMQGDGRNFGPSQNYTPQGPPQNYGPPGAGERRDPSPMNNYAPEGRDPYQGGGRGPMTSNQGNYNQWGQGSHNHDVQGNYQPQG 321
Match: A0A498JE01 ((Uncharacterized protein {ECO:0000313|EMBL:RXH92274.1}))
HSP 1 Score: 290.041 bits (741), Expect = 3.381e-90
Identity = 225/504 (44.64%), Postives = 290/504 (57.54%), Query Frame = 0
Query: 1 MSSSLLRLRRATLSLSSVF--------LNKPISSLSSTLPLTPSNPTPTIP----TVVSHFRAFRASNIYLARPRNAFQNDNDDFKIGPDDILFEGCDYNHWLITMDFPKDPRPSSEEMVQTYVETAAK-IFGSVEEAKKKIYACSTTTYQGFQVECSEETSKKFEGLPGVVFILPDSYIDPVNKQYGGDKYDNGFITPRPPPTQYGR-TGGRFGD--RNRDSNRPMRPRGEFN-QGNPAYDNRSNTVGSAGNFGPTQHPPPQQNYGPP------GVAPMNNSAGGQENYQGYRRDQMSPNQGNYNQGQRGNLYPQGP-SVPPVNLNNNAPPPQPPQSGNFSQGVPGQPPVNFNNNAPPPQSPQSGNFGRGAPGSYNQGAPGSYNQG-APGSYGQG-APGSYGQG-APGSYGQGAPGNYSQGAPGSYRQVAPSSYGQG-SPGSYVQG-AAGSYTQGASGNHRQGASGYEQDAGNYGQGGGGYFGQAAAGSLGHGGGGQEKFPNF 475
M+ S LRLRR LS++ L+ P S S LP + S P +P T++ R FR+S ARP ++ ND D +IGP+ +LFEGCDYNHWLI MD+P D +P +EEM++ Y ET AK + S+EEAKKKIYACSTTTY GFQVE SEE S+KFEGLPGVVF+LPDSYIDP NK+YGGDKY NG I PRPPP QYGR GGRF D RNRD R + R +N QGNP+Y N+ + GN+ +Q+ PQQNY P G P+ N+AGG++ YQ + + QGNYNQG + + PQ + P + N APP Q QG G N N PP S G+G G QG PG+Y QG + G+Y QG + G+YGQG + G+YGQG + ++YGQG S +Y QG ++ +Y QG + + QG + GG F Q+ + +GH G Q ++P F
Sbjct: 1 MALSSLRLRRTLSGLSTLHRSLSATSALSAPHSFSSPLLPASTSEKFPVLPPQSWTLLLQSRTFRSSPFSSARP-TSYGNDPKD-EIGPNTVLFEGCDYNHWLIVMDYPWDNKPPAEEMIRNYEETCAKGLNISMEEAKKKIYACSTTTYTGFQVEMSEEESQKFEGLPGVVFVLPDSYIDPQNKEYGGDKYINGTIIPRPPPVQYGRQQGGRFRDNNRNRDQQRYDQQRPSYNPQGNPSY-NQQGPMRGGGNYAASQN-YPQQNYSSPRQGENTGPIPV-NTAGGKDAYQP-GGEPVPSYQGNYNQGGQQSYRPQEQRNFPQGDQRNYAPPGQ--------QGFRGD-----NRNYGPPHSDTD---GQGLSGFQGQGTPGAYAQGPSSGTYAQGPSSGAYGQGPSSGAYGQGP---------------SSAAYGQGPSSAAYGQGPSSAAYGQGTASGNGQGYPAH---------GGDERFQQSNSAPMGHPGIDQVRYPMF 458
Match: A0A6J1KBI0 ((multiple organellar RNA editing factor 1, mitochondrial-like {ECO:0000313|RefSeq:XP_022998020.1}))
HSP 1 Score: 284.648 bits (727), Expect = 7.840e-89
Identity = 175/324 (54.01%), Postives = 217/324 (66.98%), Query Frame = 0
Query: 1 MSSSLLRLRRATLSLSSVFLNKPISSLSS-------TLPLTPSNPTPTIPTVVSHFRAFRASNIYLARPRNAFQNDNDDFKIGPDDILFEGCDYNHWLITMDFPKDPRPSSEEMVQTYVETAAK-IFGSVEEAKKKIYACSTTTYQGFQVECSEETSKKFEGLPGVVFILPDSYIDPVNKQYGGDKYDNGFITPRPPPTQYGRTGGRFGDRNRDSNRPMRPRGEF----NQGNPAYDNRSNTVGSAGNFGPTQHPPPQ---QNYGPPG------VAPMNNSA-GGQENYQGYRRDQMSPNQGNYNQ-GQ-------RGNLYPQG 294
M+ LRLRR TLS SVF ++ +SS S+ +L T P ++S R+S++ L+ R++F ++N+D KIGPD ILFEGCDYNHWLITM+FPKDP+P+ EEMV+TY ET AK + SVEEAKKK+YACSTTTYQGFQ +EE S+KF GLPGVVFILPDSYIDPVNK+YGGDKY +G I PRPPP QYGR GGR+ +RNR+ ++P RG QGN ++ + + G NFGP+Q+ PQ QNYGPPG +PMNN A G++ YQG R M NQGNYNQ GQ +GN PQG
Sbjct: 1 MALHSLRLRR-TLSALSVF-HRHVSSTSAASAQTSHSLLFTSPVSLSKSPAMISPCWPLRSSSMALSY-RSSFGSNNEDDKIGPDTILFEGCDYNHWLITMEFPKDPKPTPEEMVRTYEETCAKGLNISVEEAKKKMYACSTTTYQGFQAVMTEEESEKFRGLPGVVFILPDSYIDPVNKEYGGDKYIDGTIIPRPPPVQYGRQGGRYRERNRNPDQPRYDRGNRPAPNWQGNASFGQQGSMQGDGRNFGPSQNYTPQGPPQNYGPPGPGERRDPSPMNNYAPEGRDPYQG-GRGSMPSNQGNYNQWGQGTHNHDVQGNYQPQG 320
| Match Name | Stats | Description |
|---|---|---|
| F6HK80 | E-Value: 2.553e-105, PID: 49.88 | (Uncharacterized protein {ECO:0000313|EMBL:CCB5508... [more] |
| A0A5J5AZU3 | E-Value: 1.191e-100, PID: 51.23 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8536... [more] |
| A0A7J7HJ18 | E-Value: 1.982e-95, PID: 49.52 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5951... [more] |
| A0A2N9HI58 | E-Value: 1.639e-94, PID: 46.74 | (Uncharacterized protein {ECO:0000313|EMBL:SPD1392... [more] |
| A0A2N9HZP2 | E-Value: 4.644e-94, PID: 47.22 | (Uncharacterized protein {ECO:0000313|EMBL:SPD1755... [more] |
| A0A4S4D0C4 | E-Value: 5.058e-94, PID: 42.86 | (Uncharacterized protein {ECO:0000313|EMBL:THF9448... [more] |
| A0A5B6Z1I4 | E-Value: 6.183e-93, PID: 51.00 | (Uncharacterized protein {ECO:0000313|EMBL:MPA3790... [more] |
| A0A6J1H0A0 | E-Value: 2.591e-90, PID: 54.01 | (multiple organellar RNA editing factor 1, mitocho... [more] |
| A0A498JE01 | E-Value: 3.381e-90, PID: 44.64 | (Uncharacterized protein {ECO:0000313|EMBL:RXH9227... [more] |
| A0A6J1KBI0 | E-Value: 7.840e-89, PID: 54.01 | (multiple organellar RNA editing factor 1, mitocho... [more] |
Pages
back to top| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |