Resource Type:
Polypeptide
Name:
DCAR_029238
Identifier:
DCAR_029238.mRNA-protein
Sequence:
MEKSEPSFVPEWLKSSGSVTVAVSTNHRQNDHMTLKPTRNKLSADVSAHD
SGRSPVSDRTTSSYFRRTSSSNGSGNSRSYGSFGRNNRDRGWDRDKNEYR
DHDRLRLGDRRHQNYSGSLGSDFSDRFEKNGLRRTQSSVAGKHSEPLSRR
VSADLNSSNKSNYNNSSSRLLGSSGISSVRKTSFDRDFPSLGADERQTDH
GIRNIPSPGLSTNMQSLSTGYSTVANEVGWTSALAEVPVMVGANGPITSS
VLQAALPSSTSVPSSTAASLNMAETLAQGPLRVDTAPQVSVETQRLEELA
IKQSRQLIPMTPSMPKSLVLNSSEKSKVKVSQQQHQTSSIHSLRGTLEKS
DVPKTLSLGKLQVLKPARERNGVSYPEIDNLSLTNDSTVANNPLTTLPAV
VPPPSRTQIKNPNPLNVNRKPAAIMVPATLEKKPSAQLQSRNEFFNLVRK
KSLTKSSSVADSVSTVSQFVVEQPSETQTASPLSQGKDSLSANQSNMDHY
KENVNALISNINNGNGHQQSCGNGETRSRSDMILCSEEEEAAFLRSLGWD
ENAGEDEGLTEEEINEFYRDASKYGDGGDWEIIGGDLVAATAICVGGDVA
GMITERLRDPRGIRRGGLSGSGPGNRGFVPGGNRQRNFANRNEENQPAPK
RRLSSAVVKIEDGEIVDDDDVKDVGNKESAVEEKESIEVVEPSQNEKMNP
TWPRRVVDQRPRMMDSEAPPVPRVLPKDEDPSIVKRNKRMLGQLLGTLER
FRKEDAKISGTEAYMRRSDSLKRAEEKAREESEMLRQQEREQIAEKRRRD
LTLRARVAAKAEEKELEVLFIRWSEHHSKLGKFLRTKAEPPIHYSFAKPL
DEDVTSVEQRKEKIFQEWKAARREELSQYQKQLAERSVANVEKELERWQN
ARNTRKGNNDALNLQETMDQELETHRLEHGPKRRKISGGSNNEDDDVEDI
NAGEDDMMDDVLDVDENNGRGEQAIKADTDNGSPAAEKKEEVA*
Sequence Length:
994
Sequence Checksum:
c23d057f51c6d5e09908a824c6c78cc2
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_029238, derives from mRNA, DCAR_029238. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_029238 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_029238 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7ABG0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA53704.1}))
HSP 1 Score: 541.962 bits (1395), Expect = 1.731e-179
Identity = 320/588 (54.42%), Postives = 390/588 (66.33%), Query Frame = 0
Match: A0A5B7ABG0 ((Uncharacterized protein {ECO:0000313|EMBL:MPA53704.1}))
HSP 1 Score: 541.962 bits (1395), Expect = 1.731e-179
Identity = 320/588 (54.42%), Postives = 390/588 (66.33%), Query Frame = 0
Query: 1 MEKSEPSFVPEWLKSSGSVTVAVSTNHR-------QNDHMTLKPTRNKLSADVSAHDSGRSPVSDRTTSSYFRRTSSSNGSGNSRSYGSFGRNNRDRGWDRDKNEYRDHDRLRLGDRRHQNYSGSLGSDFSDRFEKNGLRRTQSSVAGKHSEPLSRRVSADLNSSNKSNYNNSSSRLLGSSGISSVRKTSFDRDFPSLGADERQTDHGIRNIPSPGLSTNMQSLSTGYSTVANEVGWTSALAEVPVMVGANGPITSSVLQAALPSSTSVPSSTAASLNMAETLAQGPLRVDTAPQVSVETQRLEELAIKQSRQLIPMTPSMPKSLVLNSSEKSKVKVSQQQHQTSSI----HSLRGTLEKSDVPKTLSLGKLQVLKPARERNGVSYPEIDNLSLTNDSTVANNPLTTLPAVV-PPPSRTQIKNPNPLNVNRKPAAIMVPATLEKKPSAQLQSRNEFFNLVRKKSLTKSSSVADSVSTVSQFVVEQP--SETQTASPLSQGKDSLSANQSNMDHYKENVNALISNINNGNGHQQSCGNGETRSRSDMILCSEEEEAAFLRSLGWDENAGEDEGLTEEEINEFYRDASKY 574
ME+SEP+ +PEWLKSSGSVT +T H+ +DH+ LK RNK S +VS D GRS V DRTTSSYF R+S +NGS +SR Y SFGR+NRDR W++D + D ++ LGD R ++YS LGS F RFEK LRR+QS GK E R+V +D SSN + +N + L G S ISS K SF+RDFPSLGA+ERQ I +PSPGLST +QSLS G GWTSALAEVPV+VG+ G SV QA +S S SS ++LNMAETLAQGP R PQ S TQRLE+LAIKQSRQLIPMTPSMPK+LVLN SEK K+K+ QQQ Q SS HS RG KSDV KT S+GKL VLKPARERNGVS D+LS T+ V N+PL P+VV P R+ NPN N RKPA + LEK+P++Q QSRN+FFNL+RKKS+ SS+V+ S VS V ++ SE TA QG+D+ ++ D E +IS+ N + +++ NG+ S SD IL SEEEEAAFLRSLGW+ENAGEDEGLTEEEIN FYR+ ++Y
Sbjct: 1 MERSEPTLIPEWLKSSGSVTGGGATTHQIVSSSLQSDDHVVLKSARNKSSVNVSDRDIGRSFVLDRTTSSYFCRSSGTNGSAHSRPYSSFGRSNRDRDWEKDMYDSLDKEKSILGDHRPRDYSDHLGSIFPPRFEKEVLRRSQSMTTGKRGEVWPRKVVSD--SSNANKNHNGNGVLPGGSDISSGHKASFERDFPSLGAEERQATPEIGRVPSPGLSTAIQSLSIGTLPAIGGDGWTSALAEVPVIVGSAG-TGGSVQQAVPATSVSAASSMTSALNMAETLAQGPSRAHITPQSSAGTQRLEDLAIKQSRQLIPMTPSMPKALVLNPSEKPKLKIGQQQRQISSSHLINHSPRGGPAKSDVSKTSSVGKLHVLKPARERNGVSPTAKDSLSPTSGCKVVNSPLAVAPSVVGSAPLRSPSNNPNLANSERKPALTI----LEKRPTSQAQSRNDFFNLMRKKSMPNSSAVSGSGPAVSPSVSDKSDESEAGTAPVTPQGRDAPLSDTCVGDWSNEKRGDMISHGNASDRAEETLTNGKNHSSSDAILYSEEEEAAFLRSLGWEENAGEDEGLTEEEINAFYRNVNEY 581
BLAST of DCAR_029238 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AFB8 ((Uncharacterized protein {ECO:0000313|EMBL:MPA53703.1}))
HSP 1 Score: 535.413 bits (1378), Expect = 7.445e-177
Identity = 317/588 (53.91%), Postives = 393/588 (66.84%), Query Frame = 0
Match: A0A5B7AFB8 ((Uncharacterized protein {ECO:0000313|EMBL:MPA53703.1}))
HSP 1 Score: 535.413 bits (1378), Expect = 7.445e-177
Identity = 317/588 (53.91%), Postives = 393/588 (66.84%), Query Frame = 0
Query: 1 MEKSEPSFVPEWLKSSGSVTVAVSTNHR-------QNDHMTLKPTRNKLSADVSAHDSGRSPVSDRTTSSYFRRTSSSNGSGNSRSYGSFGRNNRDRGWDRDKNEYRDHDRLRLGDRRHQNYSGSLGSDFSDRFEKNGLRRTQSSVAGKHSEPLSRRVSADLNSSNKSNYNNSSSRLLGSSGISSVRKTSFDRDFPSLGADERQTDHGIRNIPSPGLSTNMQSLSTGYSTVANEVGWTSALAEVPVMVGANGPITSSVLQAALPSSTSVPSSTAASLNMAETLAQGPLRVDTAPQVSVETQRLEELAIKQSRQLIPMTPSMPKSLVLNSSEKSKVKVSQQQHQTSSI----HSLRGTLEKSDVPKTLSLGKLQVLKPARERNGVSYPEIDNLSLTNDSTVANNPLTTLPAVV-PPPSRTQIKNPNPLNVNRKPAAIMVPATLEKKPSAQLQSRNEFFNLVRKKSLTKSSSVADSVSTVSQFVVEQP--SETQTASPLSQGKDSLSANQSNMDHYKENVNALISNINNGNGHQQSCGNGETRSRSDMILCSEEEEAAFLRSLGWDENAGEDEGLTEEEINEFYRDASKY 574
ME+SEP+ VPEWLKSSGSVT +T H+ ++H+ K RNK S ++S D GRS V DRTTSSYFRR+SS+NGS +SRSY FGR+NRD+ W++D + RD ++ LGD R ++YS LG+ F RFEK LRR+QS K E R+V+AD +++NK+N N + L S IS+V K +F+RDFPSLGA+ERQ I + SPGLST QSLS G S GWTSALAEVPV+VG+ G SV QA +S S SS ++LNMAETLAQGP R PQ S TQRLE+LAIKQSRQLIPMTPSMPK+LVLN SEK K+K+ QQQ Q SS HS RG KSDV KT S+GKL VLKPARERNGVS D+LS T+ V N+PL P+VV P R+ NPN N RKPA + LEK+P++Q QSRN+FFNL+RKKS+ SS+V+ S VS V ++ SE TA QG+D+ ++ D E +IS+ N + +++ NG+ S SD IL SEEEEAAFLRSLGW+ENAGEDEGLTEEEIN FYR+ ++Y
Sbjct: 1 MERSEPTLVPEWLKSSGSVTGGGATTHQIASSSLQSDEHVVSKSARNKSSVNISDRDIGRSFVLDRTTSSYFRRSSSTNGSAHSRSYSGFGRSNRDKDWEKDMYDPRDKEKSILGDHRSRDYSNHLGNIFPPRFEKEVLRRSQSMTTEKQGEAWPRKVAADSSNANKNNRKNGNGVLPVGSAISNVHKAAFERDFPSLGAEERQATPEIGRVSSPGLSTAFQSLSIGTSAAIGGDGWTSALAEVPVIVGSAG-TGGSVQQAVPATSVSAASSMTSALNMAETLAQGPSRAHITPQSSAGTQRLEDLAIKQSRQLIPMTPSMPKALVLNPSEKPKLKIGQQQRQISSSHLINHSPRGGPAKSDVSKTSSVGKLHVLKPARERNGVSPTAKDSLSPTSGCKVVNSPLAVAPSVVGSAPLRSPSNNPNLANSERKPALTI----LEKRPTSQAQSRNDFFNLMRKKSMPNSSAVSGSGPAVSPSVSDKSDESEAGTAPVTPQGRDAPLSDTCVGDWSNEKRGDMISHGNASDRAEETLTNGKNHSSSDAILYSEEEEAAFLRSLGWEENAGEDEGLTEEEINAFYRNVNEY 583
BLAST of DCAR_029238 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4DG26 (Pinin_SDK_memA domain-containing protein {ECO:0000259|Pfam:PF04696})
HSP 1 Score: 511.916 bits (1317), Expect = 9.516e-171
Identity = 273/392 (69.64%), Postives = 313/392 (79.85%), Query Frame = 0
Match: A0A4S4DG26 (Pinin_SDK_memA domain-containing protein {ECO:0000259|Pfam:PF04696})
HSP 1 Score: 511.916 bits (1317), Expect = 9.516e-171
Identity = 273/392 (69.64%), Postives = 313/392 (79.85%), Query Frame = 0
Query: 603 ITERLRDPRGIRRGGLSGSGPGNRGFVPGGNRQRNF---ANRNE-ENQPAPKRRLSSAVVKIEDGEIVDDDDVKDVGNK--ESAVEEKESIEVVEPSQNEKMNPTWPRRVVDQRPRMMDSEAPP---VPRVLPKDEDPSIVKRNKRMLGQLLGTLERFRKEDAKISGTEAYMRRSDSLKRAEEKAREESEMLRQQEREQIAEKRRRDLTLRARVAAKAEEKELEVLFIRWSEHHSKLGKFLRTKAEPPIHYSFAKPLDEDVTSVEQRKEKIFQEWKAARREELSQYQKQLAERSVANVEKELERWQNARNTRKGNNDALNLQETMDQELETHRLEHGPKRRKISGGSNNED-DDVEDINAGEDDMMDDVLDVDENNGRGEQAIKADTDNGSP 984
ITERLRDPRG+RRGGLSG GP R F+ G RQR F A R + E+QP KRRLSSA+VK EDGEI++D K +SAVE S V +Q+E+ RR +QRP MD E PP VPRVLPKDEDPS+V RNKRMLGQLLGTLE+FRKED ++SGTEAYMRRS+SL+RAE++AREESE LRQQEREQIAEKRRRDLTLRARVAAKAEEK+LE+LF+RWSEH KLG FLRTKAEPPI+Y F+KP+D+D +EQ+KE+ FQ WK ARREELSQYQKQ+ E+ +ANVEKELERWQNAR RK NND LNLQETMD+ELETHRLEHGPK RKI GSNN+D DDVEDIN GEDDMMDDVL+VDENN R ++ +K +T NGSP
Sbjct: 27 ITERLRDPRGLRRGGLSGPGP--RNFIADGGRQRGFLRPAERTDSEDQPPQKRRLSSAIVKAEDGEIIEDAAEAANNAKKKDSAVEGSSSSGVT-ANQSERKPSNLSRRDGNQRPSKMDFEVPPTEHVPRVLPKDEDPSLVNRNKRMLGQLLGTLEKFRKEDKQLSGTEAYMRRSNSLQRAEQRAREESERLRQQEREQIAEKRRRDLTLRARVAAKAEEKKLELLFLRWSEHQRKLGNFLRTKAEPPIYYMFSKPMDDDAVLIEQQKEQTFQAWKDARREELSQYQKQIGEQYLANVEKELERWQNARKARKPNNDMLNLQETMDKELETHRLEHGPKTRKIPSGSNNQDEDDVEDINVGEDDMMDDVLEVDENN-RTDETVKPETGNGSP 414
BLAST of DCAR_029238 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4D8YNJ0 ((Pinin {ECO:0000313|EMBL:TEY23095.1}))
HSP 1 Score: 506.908 bits (1304), Expect = 9.039e-169
Identity = 270/399 (67.67%), Postives = 315/399 (78.95%), Query Frame = 0
Match: A0A4D8YNJ0 ((Pinin {ECO:0000313|EMBL:TEY23095.1}))
HSP 1 Score: 506.908 bits (1304), Expect = 9.039e-169
Identity = 270/399 (67.67%), Postives = 315/399 (78.95%), Query Frame = 0
Query: 603 ITERLRDPRGIRRGGLSGSGPGNRGFVPGGNRQRNF---ANRNE-ENQPAPKRRLSSAVVKIEDGEIVDD--DDVKDVGNKESAVEEKESIEVVEPSQNEKMNPTWPRRVVDQRPRMMDSEAPP---VPRVLPKDEDPSIVKRNKRMLGQLLGTLERFRKEDAKISGTEAYMRRSDSLKRAEEKAREESEMLRQQEREQIAEKRRRDLTLRARVAAKAEEKELEVLFIRWSEHHSKLGKFLR---TKAEPPIHYSFAKPLDEDVTSVEQRKEKIFQEWKAARREELSQYQKQLAERSVANVEKELERWQNARNTRKGNNDALNLQETMDQELETHRLEHGPKRRKISGGSNNED-DDVEDINAGEDDMMDDVLDVDENNGRGEQAIKADTDNGSPAAEK 988
ITERLRDPRGIRRGGL+G+GP R F GNRQR F A+RN+ ++QP KRRLSSAVVK+EDGEI++ + DV KE A++ +++ Q E+ W +RV Q+P MD E PP VPRVLPKDEDPS V RNKRMLGQLLGTLERFRKED K+SGTEAYMRRSDSLKRAE++AREESE LR QEREQIAEKR+RDLTLRAR+AAKAEEK +E+LF+RWSEHH KLG F+R TKAEPPI+YSFAKPLD+D T +EQ+KEK+FQEWK+ARREELSQYQKQ+ ++ VANV+KELERWQN R R+ NN NLQETMD+ELETH+LEHGPK RKI G SNNED DDVEDIN EDDMMDDVL VD+N GR ++ K +T N P +K
Sbjct: 28 ITERLRDPRGIRRGGLTGAGP--RNFAANGNRQRGFVRPADRNDADDQPPAKRRLSSAVVKVEDGEIIEGGPEAGIDVEEKEVALDTGDAVNT-NGRQGERKASNWSQRVGSQQPSKMDFETPPAEHVPRVLPKDEDPSSVSRNKRMLGQLLGTLERFRKEDVKLSGTEAYMRRSDSLKRAEQRAREESEKLRLQEREQIAEKRKRDLTLRARIAAKAEEKNMELLFLRWSEHHKKLGNFIRHVMTKAEPPIYYSFAKPLDQDPTLIEQQKEKMFQEWKSARREELSQYQKQILDQYVANVDKELERWQNGRKGRRPNNSVANLQETMDKELETHQLEHGPKNRKIPGQSNNEDEDDVEDINVAEDDMMDDVLGVDDNGGRVDETEKLETANIPPEDKK 423
BLAST of DCAR_029238 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AA54 ((Uncharacterized protein {ECO:0000313|EMBL:MPA53702.1}))
HSP 1 Score: 511.146 bits (1315), Expect = 1.902e-167
Identity = 318/591 (53.81%), Postives = 395/591 (66.84%), Query Frame = 0
Match: A0A5B7AA54 ((Uncharacterized protein {ECO:0000313|EMBL:MPA53702.1}))
HSP 1 Score: 511.146 bits (1315), Expect = 1.902e-167
Identity = 318/591 (53.81%), Postives = 395/591 (66.84%), Query Frame = 0
Query: 1 MEKSEPSFVPEWLKSSGSVTVAVSTNHR-------QNDHMTLKPTRNKLSADVSAHDSGRSPVSDRTTSSYFRRTSSSNGSGNSRSYGSFGRNNRDRGWDRDKNEYRDHDRLRLGDRRHQNYSGSLGSDFSDRFEKNGLRRTQSSVAGKHSEPLSRRVSADLNSSNKSNYNNSSSRLLGSSGISSVRKTSFDRDFPSLGADERQTDHGIRNIPSPGLSTNMQSLSTGYSTVANEVGWTSALAEVPVMVGANGPITSSVLQAALPSSTSVP--SSTAASLNMAETLAQGPLRVDTAPQVSVETQRLEELAIKQSRQLIPMTPSMPKSLVLNSSEKSKVKVSQQQHQTSSI----HSLRGTLEKSDVPKTLSLGKLQVLKPARERNGVSYPEIDNLSLTNDSTVANNPLTTLPAVVPPPS-RTQIKNPNPLNVNRKPAAIMVPATLEKKPSAQLQSRNEFFNLVRKKSLTK-SSSVADSVSTVSQFVVEQP--SETQTASPLSQGKDSLSANQSNMDHYKENVNALISNINNGNGHQQSCGNGETRSRSDMILCSEEEEAAFLRSLGWDENAGEDEGLTEEEINEFYRDASKY 574
ME+SEP+ VPEWLKSSGSVT +T H+ ++H+ K RNK S ++S D GRS V DRTTSSYFRR+SS+NGS +SRSY FGR+NRD+ W++D + RD ++ LGD R ++YS LG+ F RFEK LRR+QS K E R+V+AD +++NK+N N + L S IS+V K +F+RDFPSLGA+ERQ I + SPGLST QSLS G S GWTSALAEVPV+VG+ G T +Q A+P +TSVP SS SLNMAETLAQGP R T PQ S TQRLEELAIKQSRQLIP+TPSMPK+LVLN SEK K K+ QQQ Q SS HS RG KSDV KT S+GKLQVLKPARERNGVS D+LS T+ S +ANNPL P+VV S R+ NPN + RKPA + LEK+P+ Q QSRN+FFNL+R+KS+T SS+V S +S V+++ SE TA QG+D+ ++ S D E + + N N + ++ G+ S SD IL SEEEEAAFLRSLGW+ENAGEDEGLTEEEI+ F++ +Y
Sbjct: 1 MERSEPTLVPEWLKSSGSVTGGGATTHQIASSSLQSDEHVVSKSARNKSSVNISDRDIGRSFVLDRTTSSYFRRSSSTNGSAHSRSYSGFGRSNRDKDWEKDMYDPRDKEKSILGDHRSRDYSNHLGNIFPPRFEKEVLRRSQSMTTEKQGEAWPRKVAADSSNANKNNRKNGNGVLPVGSAISNVHKAAFERDFPSLGAEERQATPEIGRVSSPGLSTAFQSLSIGTSAAIGGDGWTSALAEVPVIVGSTG--TGGSVQQAVP-ATSVPTASSMMTSLNMAETLAQGPSRAHTTPQPSAGTQRLEELAIKQSRQLIPVTPSMPKALVLNPSEKPKPKIGQQQQQISSPHLVNHSPRGGPAKSDVSKTPSVGKLQVLKPARERNGVSPTVKDSLSPTSGSKIANNPLAVSPSVVGSASLRSPRNNPNLASSERKPALTI----LEKRPTFQAQSRNDFFNLMRRKSMTNPSSAVPGSGPALSPSVLDKSDESEAGTAPVTPQGRDAPLSDTSVGDWSNEKRSDMNGNGNTSDRAVETPTYGKNHSSSDAILYSEEEEAAFLRSLGWEENAGEDEGLTEEEISAFHKKVEEY 584
BLAST of DCAR_029238 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RGL6 ((Serine/threonine-protein kinase {ECO:0000313|EMBL:PSS29180.1}))
HSP 1 Score: 511.146 bits (1315), Expect = 1.944e-167
Identity = 303/596 (50.84%), Postives = 398/596 (66.78%), Query Frame = 0
Match: A0A2R6RGL6 ((Serine/threonine-protein kinase {ECO:0000313|EMBL:PSS29180.1}))
HSP 1 Score: 511.146 bits (1315), Expect = 1.944e-167
Identity = 303/596 (50.84%), Postives = 398/596 (66.78%), Query Frame = 0
Query: 1 MEKSEPSFVPEWLKSSGSVTVA------VSTNHRQNDHMTLKPTRNKLSADVSAHDSGRSPVSDRTTSSYFRRTSSSNGSGNSRSYGSFGRNNRDRGWDRDKNEYRDHDRLRLGDRRHQNYSGSLGSDFSDRFEKNGLRRTQSSVAGKHSEPLSRRVSADLNSSNKSNYNNSSSRLLGSSGISSVRKTSFDRDFPSLGADERQTDHGIRNIPSPGLSTNMQSLSTGYSTVANEVGWTSALAEVPVMVGANGPITSSVLQAALPSSTSVPSSTAASLNMAETLAQGPLRVDTAPQVSVETQRLEELAIKQSRQLIPMTPSMPKSLVLNSSEKSKVKVSQQQHQTSSIH----SLRGTLEKSDVPKTLSLGKLQVLKPARERNGVSYPEIDNLSLTNDSTVANNPLTTLPAVV-PPPSRTQIKNPNPLNVNRKPAAIMVPATLEKKPSAQLQSRNEFFNLVRKKSLTKSSSVADSVSTV-SQFVVEQPSETQTASP--LSQGKDSLSANQSNMDHYKENVNALISN---INNG----NG-HQQSCGNGETRSRSDMILCSEEEEAAFLRSLGWDENAGEDEGLTEEEINEFYRDASKY 574
ME+SEP+ +PEWLK SGS++ V+++ ++D + KP+RNK S ++ HD+GRS VSDRTTS+YFR++SS+NGS + RS+GSFGR+NRD+ W+++ ++RD ++ LGD R + YS L + RFEK+ LRR+QS AGK E R+V +DL+++NKSN N S+ L G S +S V K +F+RDFPSLG +ERQ I + SPGLST +QSL G S V GWTSALAEVPV+VG+NG SV QA P+S+S+ SS +NMAETL QGP R T PQ+S ETQ++EELAIKQSRQLIPMTPSMPK+LVLN SEK K+K+ QHQ SS H S R KSD+ +T S+GKL VLKP RER+GVS D+ S T+ S VA++P+ P+VV P R NPN +V RKP+ + LEKKP+ Q QSRN+FFNL+RKKS+T SS S S V ++P E + S +S+ DS ++ S D E N + SN NN NG HQ+ NG+ S +++L SEEEEAAFLRSLGW+ENAG+D GLTE+EIN +Y++ +Y
Sbjct: 1 MERSEPTLIPEWLKGSGSISGGTTSHQMVASSLHKDDRVASKPSRNKSSMSINFHDTGRSSVSDRTTSAYFRKSSSTNGSSHVRSHGSFGRSNRDKDWEKEIYDFRDEEKSILGDHRRREYSDPLENILPSRFEKD-LRRSQSMTAGKQGETWPRQVPSDLSNANKSNPNKSNGLLAGGSAVSCVHKAAFERDFPSLGTEERQAAPEIGRVSSPGLSTPIQSLPIGNSAVIRGNGWTSALAEVPVLVGSNG-AAGSVQQAIPPTSSSLASSMVTGMNMAETLVQGPPRAHTIPQLSAETQKMEELAIKQSRQLIPMTPSMPKALVLNPSEKPKLKLG-HQHQISSSHPTNQSPRNGSVKSDISRTSSVGKLHVLKPVRERSGVSPTAKDSSSPTSVSRVASSPVAVAPSVVGSAPLRLPSNNPNLASVERKPSL----SILEKKPTPQSQSRNDFFNLMRKKSVTNPSSPLTSPGLAGSSSVPDKPGEAENGSVPNMSRDGDSPLSDSSFGDRTTEKRNDVKSNGIASNNAREFLNGEHQEHLNNGKDHSICNVVLRSEEEEAAFLRSLGWEENAGDDGGLTEDEINSYYKEVDEY 589
BLAST of DCAR_029238 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AET4 ((Putative pinin {ECO:0000313|EMBL:MPA54468.1}))
HSP 1 Score: 499.59 bits (1285), Expect = 4.701e-166
Identity = 283/395 (71.65%), Postives = 319/395 (80.76%), Query Frame = 0
Match: A0A5B7AET4 ((Putative pinin {ECO:0000313|EMBL:MPA54468.1}))
HSP 1 Score: 499.59 bits (1285), Expect = 4.701e-166
Identity = 283/395 (71.65%), Postives = 319/395 (80.76%), Query Frame = 0
Query: 603 ITERLRDPRGIRRGGLSGSGPGNRGFVPGGNRQRNF---ANRNE-ENQPAPKRRLSSAVVKIEDGEIVDD--DDVKDVGNKESAVEEKESIEVVEPSQNEKMNPTWPRRVVDQRPRMMDSEAPP---VPRVLPKDEDPSIVKRNKRMLGQLLGTLERFRKEDAKISGTEAYMRRSDSLKRAEEKAREESEMLRQQEREQIAEKRRRDLTLRARVAAKAEEKELEVLFIRWSEHHSKLGKFLRTKAEPPIHYSFAKPLDEDVTSVEQRKEKIFQEWKAARREELSQYQKQLAERSVANVEKELERWQNARNTRKGNNDALNLQETMDQELETHRLEHGPKRRKISGGSNNED-DDVEDINAGEDDMMDDVLDVDENNGRGEQAIKADTDNGSPAAE 987
ITERLRDPRG+RRGGLSGSGP R F G RQR F A R + E+QP PKRRLSSAVVK+EDGEI +D + K+ +S VE S V +Q+E+ W RR +QR MD E PP VPRVLPKDEDPS+V RNKRMLGQLLGTLE+FRKED ++SGTEAYMRRS SL+RAE++AREESE LRQQEREQIAEKRRRDLTLRARVAAKAEEK+LE+LF+RWSEHH KLG F RTKAEPPI+Y FAKP+DEDVT VEQ+KEKIFQEWKAARREELS+YQKQ+ E+ VA+VEKELERWQNAR RK NND +NLQETMD+ELETHRLEHGPK RKI GGSN+ D DDVEDIN GEDDMMDDVLDVDEN R ++A+K + NGSP E
Sbjct: 27 ITERLRDPRGLRRGGLSGSGP--RNFSANGGRQRGFLRPAERTDSEDQPTPKRRLSSAVVKVEDGEITEDAAEVAKNAQKDDSTVEG--SAGSVSANQSERKPSNWSRRDGNQRSSKMDFEVPPTEHVPRVLPKDEDPSLVNRNKRMLGQLLGTLEKFRKEDMQLSGTEAYMRRSSSLQRAEQRAREESERLRQQEREQIAEKRRRDLTLRARVAAKAEEKKLELLFLRWSEHHRKLGNFQRTKAEPPIYYLFAKPMDEDVTLVEQQKEKIFQEWKAARREELSEYQKQIGEQYVADVEKELERWQNARKARKPNND-MNLQETMDKELETHRLEHGPKTRKIPGGSNSLDEDDVEDINVGEDDMMDDVLDVDENR-RADEAVKPEAANGSPHPE 415
BLAST of DCAR_029238 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J8LAV9 (Pinin_SDK_memA domain-containing protein {ECO:0000259|Pfam:PF04696})
HSP 1 Score: 498.819 bits (1283), Expect = 1.082e-165
Identity = 263/392 (67.09%), Postives = 309/392 (78.83%), Query Frame = 0
Match: A0A7J8LAV9 (Pinin_SDK_memA domain-containing protein {ECO:0000259|Pfam:PF04696})
HSP 1 Score: 498.819 bits (1283), Expect = 1.082e-165
Identity = 263/392 (67.09%), Postives = 309/392 (78.83%), Query Frame = 0
Query: 603 ITERLRDPRGIRRGGLSGSGPGNRGFVPGGNRQRNF---ANRNE-ENQPAPKRRLSSAVVKIEDGEIVDDDDVKDVGNKESAVEEKESIEVVEPSQNEKMNPTWPRRVVDQRPRMMDSEAP---PVPRVLPKDEDPSIVKRNKRMLGQLLGTLERFRKEDAKISGTEAYMRRSDSLKRAEEKAREESEMLRQQEREQIAEKRRRDLTLRARVAAKAEEKELEVLFIRWSEHHSKLGKFLRTKAEPPIHYSFAKPLDEDVTSVEQRKEKIFQEWKAARREELSQYQKQLAERSVANVEKELERWQNARNTRKGNNDALNLQETMDQELETHRLEHGPKRRKISGGSNNED-DDVEDINAGEDDMMDDVLDVDENNG-RGEQAIKADTDNGSPA 985
ITERLRDPRG+RRGGLSG GP R F G+RQR F A+R + E+QP KRRLSSAVVK+EDGEIVDD+ KD + AVE ++ + + + W RR V+Q P D+E P VPR+LPKDEDPS++ RNKRMLGQLLGTLERFRKED ++SGTEAYMRRS+SL+RAE++AREESE LRQQEREQIAEKRRRDLTLRARVAAKAEEK+LE+LF++WSEHH KL F+RTK EPPI+Y KPL ED EQ+KE+ + EWK ARREELS+YQKQ+ E V NVEKELERWQNAR RK NND +NLQETMD+EL++HRLEHGPK+RKI GG+NNED +DVEDIN GEDDMMDDVL VD+NNG RG++ KA+ DN SP
Sbjct: 27 ITERLRDPRGLRRGGLSGIGP--RNFAANGSRQRGFLRPADRTDGEDQPPAKRRLSSAVVKVEDGEIVDDEVAKDASD--MAVEGSGAVHESDRKLSTQQQSGWSRRDVNQTPLKKDAEVPVAEHVPRILPKDEDPSLINRNKRMLGQLLGTLERFRKEDKQLSGTEAYMRRSNSLQRAEQRAREESEKLRQQEREQIAEKRRRDLTLRARVAAKAEEKKLELLFLQWSEHHKKLSNFIRTKTEPPIYYLPTKPLHEDAAIYEQQKEQEYLEWKTARREELSEYQKQIGEEYVGNVEKELERWQNARKARKANND-MNLQETMDKELDSHRLEHGPKKRKIPGGNNNEDEEDVEDINVGEDDMMDDVLGVDDNNGRRGDETAKAEPDNTSPV 413
BLAST of DCAR_029238 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J8WKQ2 (Pinin_SDK_memA domain-containing protein {ECO:0000259|Pfam:PF04696})
HSP 1 Score: 498.819 bits (1283), Expect = 1.082e-165
Identity = 263/392 (67.09%), Postives = 309/392 (78.83%), Query Frame = 0
Match: A0A7J8WKQ2 (Pinin_SDK_memA domain-containing protein {ECO:0000259|Pfam:PF04696})
HSP 1 Score: 498.819 bits (1283), Expect = 1.082e-165
Identity = 263/392 (67.09%), Postives = 309/392 (78.83%), Query Frame = 0
Query: 603 ITERLRDPRGIRRGGLSGSGPGNRGFVPGGNRQRNF---ANRNE-ENQPAPKRRLSSAVVKIEDGEIVDDDDVKDVGNKESAVEEKESIEVVEPSQNEKMNPTWPRRVVDQRPRMMDSEAP---PVPRVLPKDEDPSIVKRNKRMLGQLLGTLERFRKEDAKISGTEAYMRRSDSLKRAEEKAREESEMLRQQEREQIAEKRRRDLTLRARVAAKAEEKELEVLFIRWSEHHSKLGKFLRTKAEPPIHYSFAKPLDEDVTSVEQRKEKIFQEWKAARREELSQYQKQLAERSVANVEKELERWQNARNTRKGNNDALNLQETMDQELETHRLEHGPKRRKISGGSNNED-DDVEDINAGEDDMMDDVLDVDENNG-RGEQAIKADTDNGSPA 985
ITERLRDPRG+RRGGLSG GP R F G+RQR F A+R + E+QP KRRLSSAVVK+EDGEIVDD+ KD + AVE ++ + + + W RR V+Q P D+E P VPR+LPKDEDPS++ RNKRMLGQLLGTLERFRKED ++SGTEAYMRRS+SL+RAE++AREESE LRQQEREQIAEKRRRDLTLRARVAAKAEEK+LE+LF++WSEHH KL F+RTK EPPI+Y KPL ED EQ+KE+ + EWK ARREELS+YQKQ+ E V NVEKELERWQNAR RK NND +NLQETMD+EL++HRLEHGPK+RKI GG+NNED +DVEDIN GEDDMMDDVL VD+NNG RG++ KA+ DN SP
Sbjct: 27 ITERLRDPRGLRRGGLSGIGP--RNFAANGSRQRGFLRPADRTDGEDQPPAKRRLSSAVVKVEDGEIVDDEVAKDASD--MAVEGSGAVHESDRKLSTQQQSGWSRRDVNQTPLKKDAEVPVAEHVPRILPKDEDPSLINRNKRMLGQLLGTLERFRKEDKQLSGTEAYMRRSNSLQRAEQRAREESEKLRQQEREQIAEKRRRDLTLRARVAAKAEEKKLELLFLQWSEHHKKLSNFIRTKTEPPIYYLPTKPLHEDAAIYEQQKEQEYLEWKTARREELSEYQKQIGEEYVGNVEKELERWQNARKARKANND-MNLQETMDKELDSHRLEHGPKKRKIPGGNNNEDEEDVEDINVGEDDMMDDVLGVDDNNGRRGDETAKAEPDNTSPV 413
BLAST of DCAR_029238 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J9DDE4 (Pinin_SDK_memA domain-containing protein {ECO:0000259|Pfam:PF04696})
HSP 1 Score: 497.664 bits (1280), Expect = 2.503e-165
Identity = 263/392 (67.09%), Postives = 309/392 (78.83%), Query Frame = 0
Match: A0A7J9DDE4 (Pinin_SDK_memA domain-containing protein {ECO:0000259|Pfam:PF04696})
HSP 1 Score: 497.664 bits (1280), Expect = 2.503e-165
Identity = 263/392 (67.09%), Postives = 309/392 (78.83%), Query Frame = 0
Query: 603 ITERLRDPRGIRRGGLSGSGPGNRGFVPGGNRQRNF---ANR-NEENQPAPKRRLSSAVVKIEDGEIVDDDDVKDVGNKESAVEEKESIEVVEPSQNEKMNPTWPRRVVDQRPRMMDSEAP---PVPRVLPKDEDPSIVKRNKRMLGQLLGTLERFRKEDAKISGTEAYMRRSDSLKRAEEKAREESEMLRQQEREQIAEKRRRDLTLRARVAAKAEEKELEVLFIRWSEHHSKLGKFLRTKAEPPIHYSFAKPLDEDVTSVEQRKEKIFQEWKAARREELSQYQKQLAERSVANVEKELERWQNARNTRKGNNDALNLQETMDQELETHRLEHGPKRRKISGGSNNED-DDVEDINAGEDDMMDDVLDVDENNG-RGEQAIKADTDNGSPA 985
ITERLRDPRG+RRGGLSG GP R F G+RQR F A+R + E+QP KRRLSSAVVK+EDGEIVDD+ KD + AVE ++ + + + W RR V+Q P D+E P VPR+LPKDEDPS++ RNKRMLGQLLGTLERFRKED ++SGTEAYMRRS+SL+RAE++AREESE LRQQEREQIAEKRRRDLTLRARVAAKAEEK+LE+LF++WSEHH KL F+RTK EPPI+Y KPL ED EQ+KE+ + EWK ARREELS+YQKQ+ E V NVEKELERWQNAR RK NND +NLQETMD+EL++HRLEHGPK+RKI GG+NNED +DVEDIN GEDDMMDDVL VD+NNG RG++ KA+ DN SP
Sbjct: 27 ITERLRDPRGLRRGGLSGIGP--RNFAANGSRQRGFLRPADRIDGEDQPPAKRRLSSAVVKVEDGEIVDDEVAKDASD--MAVEGSGAVHESDRKLSTQQQSGWSRRDVNQTPLKKDAEVPVAEHVPRILPKDEDPSLINRNKRMLGQLLGTLERFRKEDKQLSGTEAYMRRSNSLQRAEQRAREESEKLRQQEREQIAEKRRRDLTLRARVAAKAEEKKLELLFLQWSEHHKKLSNFIRTKTEPPIYYLPTKPLHEDAAVYEQQKEQEYLEWKTARREELSEYQKQIGEEYVGNVEKELERWQNARKARKANND-MNLQETMDKELDSHRLEHGPKKRKIPGGNNNEDEEDVEDINVGEDDMMDDVLGVDDNNGRRGDETAKAEPDNTSPV 413
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7ABG0 | E-Value: 1.731e-179, PID: 54.42 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5370... [more] |
| A0A5B7AFB8 | E-Value: 7.445e-177, PID: 53.91 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5370... [more] |
| A0A4S4DG26 | E-Value: 9.516e-171, PID: 69.64 | Pinin_SDK_memA domain-containing protein {ECO:0000... [more] |
| A0A4D8YNJ0 | E-Value: 9.039e-169, PID: 67.67 | (Pinin {ECO:0000313|EMBL:TEY23095.1})[more] |
| A0A5B7AA54 | E-Value: 1.902e-167, PID: 53.81 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5370... [more] |
| A0A2R6RGL6 | E-Value: 1.944e-167, PID: 50.84 | (Serine/threonine-protein kinase {ECO:0000313|EMBL... [more] |
| A0A5B7AET4 | E-Value: 4.701e-166, PID: 71.65 | (Putative pinin {ECO:0000313|EMBL:MPA54468.1})[more] |
| A0A7J8LAV9 | E-Value: 1.082e-165, PID: 67.09 | Pinin_SDK_memA domain-containing protein {ECO:0000... [more] |
| A0A7J8WKQ2 | E-Value: 1.082e-165, PID: 67.09 | Pinin_SDK_memA domain-containing protein {ECO:0000... [more] |
| A0A7J9DDE4 | E-Value: 2.503e-165, PID: 67.09 | Pinin_SDK_memA domain-containing protein {ECO:0000... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |