Resource Type:
Polypeptide
Name:
DCAR_028968
Identifier:
DCAR_028968.mRNA-protein
Sequence:
MGSACCVAAKDRTITNGSSREIVQRNVRNSPSWSFRWDNRRRVAGEETSL
TWSSDGISRNDGLDFKSRTTVGSAYASEEGSPINSSQNLMWQKSPVAEGN
RGTLTIPPSDPPVSGNSMEVKDSRASPTISDLSTTKMSPSMRSVSSFSAS
PLSSKSHVLPLSSTPSRWPRRSPGHQLLRQVSDSRIRRLKSPSFSISEEG
SPFVLPGWSYESIGMSQGGSSDNWAIPEFTELMPTSHRERWSFDSDSMGM
IRHKLSRSSGRSFSSPPTEVKTCGLCAKLITQRSSWGSQKIMANNELAVH
AVLICGHVYHAECLEKMTPEVSKYDPACPVCTLGEKQAFKLSEKAMRAEM
DLMTRISKKLRSRVVGSDLSSESVVFDRQRSSGLESRGYKLSTSSSMKSS
FAKPFFKRRFSFGSKGSKSPSENHSTRKSGLFWSKSSKK*
Sequence Length:
440
Sequence Checksum:
c6d31b4bc78c618d52710edd611c8e9d
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_028968, derives from mRNA, DCAR_028968. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_028968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_028968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7H2R2 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 540.806 bits (1392), Expect = 0.000e+0
Identity = 290/440 (65.91%), Postives = 338/440 (76.82%), Query Frame = 0
Match: A0A7J7H2R2 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 540.806 bits (1392), Expect = 0.000e+0
Identity = 290/440 (65.91%), Postives = 338/440 (76.82%), Query Frame = 0
Query: 1 MGSACCVAAKDRTITNGSSREIVQRNVRNSPSWSFRWDNRRRVAGEETSLTWSSDGISRNDGLDFKSRTTVGSAYASEEGSPINSSQNLMWQKSPVAEGNRGTLTIPPSDPPVSGN-SMEVKDSRASPTISDLSTTKMSPSMRSVSSFSASPLSSKSHVLPLSSTPSRWPRRSPGHQLLRQVSDSRIRRLKSPSFSISEEGSPFVLPGWSYESIGMSQGGSSDNWAIPEFTELMPTSHRERWSFDSDSMGMIRHKLSRSSGRSFSSPPTEVKTCGLCAKLITQRSSWGSQKIMANNELAVHAVLICGHVYHAECLEKMTPEVSKYDPACPVCTLGEKQAFKLSEKAMRAEMDLMTRISKKLRSRVVGSDLSSESVVFDRQRSSGLESRGYKLSTSSSMKSSFAKPFFKRRFSFGSKGSKSPSENHSTRKSGLFWSKSSKK 439
MGSACCVAA+DRTITNG S E+ QRNVR SPSWSFRWDNR RVAGEETS+ W SDG SRND LD K TTV + YASEEGSP++S + L WQKSP++E N G L +P SD S N +E K+S SP SDLS TK+SPS+ S+SS S SPLSS+SH LP+SSTPSRWPR SPGHQLLRQVSDSR+ KS +FSISEE S F LPGWS ES S GGSSD W+IP F ELM SH E WSFDS+S G R K +RSS R SP T+++TCG C+KL+T++SSWG+QKI+A N+LAV AVLICGHVYHAECLE MTPE+SKYDPACPVCT GEKQA KL EKA+RAEMDL R +K+ ++R+V SD +SVVFD + SGL+ + K+ +SS MKSS KPF KR FSFGSKG++ EN S RK G FWSKSSK+
Sbjct: 1 MGSACCVAARDRTITNGPSNEVSQRNVRYSPSWSFRWDNRGRVAGEETSVNWLSDGASRNDRLDIKYGTTVETTYASEEGSPLDSFRTLTWQKSPISERNSGILRLPSSDQSNSKNFPIEAKESTESPAASDLSPTKLSPSVHSISSLSTSPLSSQSH-LPVSSTPSRWPRHSPGHQLLRQVSDSRVPGHKSSNFSISEEIS-FPLPGWSNESTRGSIGGSSDGWSIPAFPELMAGSHGEMWSFDSESTGFNREKTTRSSNRLSVSPSTDMQTCGFCSKLLTEKSSWGTQKIIATNDLAVVAVLICGHVYHAECLENMTPEISKYDPACPVCTFGEKQALKLCEKALRAEMDLKAR-NKRSKNRIVSSDFDGDSVVFDGHKMSGLDEKNLKMISSSRMKSSLGKPFLKRHFSFGSKGTRPLLENQSARKKGFFWSKSSKE 437
BLAST of DCAR_028968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6WB13 ((uncharacterized protein LOC113731256 isoform X2 {ECO:0000313|RefSeq:XP_027112215.1}))
HSP 1 Score: 535.413 bits (1378), Expect = 0.000e+0
Identity = 283/438 (64.61%), Postives = 351/438 (80.14%), Query Frame = 0
Match: A0A6P6WB13 ((uncharacterized protein LOC113731256 isoform X2 {ECO:0000313|RefSeq:XP_027112215.1}))
HSP 1 Score: 535.413 bits (1378), Expect = 0.000e+0
Identity = 283/438 (64.61%), Postives = 351/438 (80.14%), Query Frame = 0
Query: 1 MGSACCVAAKDRTITNGSSREIVQRNVRNSPSWSFRWDNRRRVAGEETSLTWSSDGISRNDGLDFKSRTTVGSAYASEEGSPINSSQNLMWQKSPVAEGNRGTLTIPPSDPPVSGNSMEVKDSRASPTISDLSTTKMSPSMRSVSSFSASPLSSKSHVLPLSSTPSRWPRRSPGHQLLRQVSDSRIRRLKSPSFSISEEGSPFVLPGWSYESIGMSQGGSSDNWAIPEFTELMPTSHRERWSFDSDSMGMIRHKLSRSSGRSFSSPPTEVKTCGLCAKLITQRSSWGSQKIMANNELAVHAVLICGHVYHAECLEKMTPEVSKYDPACPVCTLGEKQAFKLSEKAMRAEMDLMTRISKKLRSRVVGSDLSSESVVFDRQRSSGLESRGYKLSTSSSMKSSFAKPFFKRRFSFGSKGSKSPSENHSTRKSGLFWSKSSK 438
MGS CCVAAKDRT+TNGS+ EI+ RN+R+SPSWSFRWDNR RV GEETS+ W SDG++RND D KS T+ + +ASEEGSP++S ++L+WQKSPV++ N G + SDP NS +V++S ASP +S S K+SPS SVSS S SPLSS+SH LP SSTPSRWPRRSPGHQLLRQVSDS I +KSP+ S+SEE S FVLPGWS+ES S GGSSD+W+ P F ++M TS RERWSFDS+++G +R K++RSSGR+ S ++++CG+CAKL+T++SSWGSQKI+A NELAV AVLICGHVYHAECLE MTP+V+KYDPACP+CT GEKQA K+SEKA+RAE +L TR K+ R+R+ SDL+S+ V FDRQ+SSG + RG K+S+SSSMK S AKPF +R FSFGSKGS+S SENHS+ K G FW+KS K
Sbjct: 1 MGSVCCVAAKDRTVTNGSTSEIMHRNIRHSPSWSFRWDNRVRVVGEETSVNWISDGVTRNDPPDVKSGPTIETTHASEEGSPLDSFRSLVWQKSPVSDVNNGVTRLTTSDPLTCTNSTDVRESTASPAVSCPSPVKLSPSAPSVSSLSTSPLSSRSHPLPASSTPSRWPRRSPGHQLLRQVSDSLIPTIKSPTLSVSEETSSFVLPGWSHESTRASHGGSSDSWSTPTFPDIMSTSRRERWSFDSETLGFVRDKITRSSGRN-SGYSFDLQSCGICAKLLTEKSSWGSQKIIATNELAVVAVLICGHVYHAECLENMTPDVNKYDPACPICTFGEKQAQKMSEKALRAEFELKTR--KRSRNRIADSDLNSDLVAFDRQKSSGRDGRGPKMSSSSSMKDSLAKPFLRRHFSFGSKGSRSMSENHSSWKRGFFWAKSRK 435
BLAST of DCAR_028968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4ELD7 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 535.028 bits (1377), Expect = 0.000e+0
Identity = 290/441 (65.76%), Postives = 337/441 (76.42%), Query Frame = 0
Match: A0A4S4ELD7 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 535.028 bits (1377), Expect = 0.000e+0
Identity = 290/441 (65.76%), Postives = 337/441 (76.42%), Query Frame = 0
Query: 1 MGSACCVAAKDRTITNGSSREIVQRNVRNSPSWSFRWDNRRRVAGEETSLTWSSDGISR-NDGLDFKSRTTVGSAYASEEGSPINSSQNLMWQKSPVAEGNRGTLTIPPSDPPVSGN-SMEVKDSRASPTISDLSTTKMSPSMRSVSSFSASPLSSKSHVLPLSSTPSRWPRRSPGHQLLRQVSDSRIRRLKSPSFSISEEGSPFVLPGWSYESIGMSQGGSSDNWAIPEFTELMPTSHRERWSFDSDSMGMIRHKLSRSSGRSFSSPPTEVKTCGLCAKLITQRSSWGSQKIMANNELAVHAVLICGHVYHAECLEKMTPEVSKYDPACPVCTLGEKQAFKLSEKAMRAEMDLMTRISKKLRSRVVGSDLSSESVVFDRQRSSGLESRGYKLSTSSSMKSSFAKPFFKRRFSFGSKGSKSPSENHSTRKSGLFWSKSSKK 439
MGSACCVAA+DRTITNG S E+ QRNVR SPSWSFRWDNR RVAGEETS+ W SDG SR ND LD K TTV + YASEEGSP++S + L WQKSP++E N G L +P SD S N E K+S SP SDLS TK+SPS+ S+SS S SPLSS+SH LP+SSTPSRWPR SPGHQLLRQVSDSR+ KS +FSISEE S F LPGWS ES S GGSSD W+IP F ELM SH E WSFDS+S G R K +RSS R SP T+++TCG C+KL+T++SSWG+QKI+A N+LAV AVLICGHVYHAECLE MTPE+SKYDPACPVCT GEKQA KL EKA+RAEMDL R +K+ ++R+V SD +SVVFD + SGL+ + K+ +SS MKSS KPF KR FSFGSKG++ EN S RK G FWSKSSK+
Sbjct: 1 MGSACCVAARDRTITNGPSNEVSQRNVRYSPSWSFRWDNRGRVAGEETSVNWLSDGASRKNDRLDIKYGTTVETTYASEEGSPLDSFRTLTWQKSPISERNSGILRLPSSDQSNSKNFPTEAKESTESPAASDLSPTKLSPSVHSISSLSTSPLSSQSH-LPVSSTPSRWPRHSPGHQLLRQVSDSRVPGHKSSNFSISEEIS-FPLPGWSNESTRGSIGGSSDGWSIPAFPELMAGSHGEMWSFDSESTGFNREKTTRSSNRLSVSPSTDMQTCGFCSKLLTEKSSWGTQKIIATNDLAVVAVLICGHVYHAECLENMTPEISKYDPACPVCTFGEKQALKLCEKALRAEMDLKAR-NKRSKNRIVSSDFDGDSVVFDGHKMSGLDEKNLKMISSSRMKSSLGKPFLKRHFSFGSKGTRPLLENQSARKKGFFWSKSSKE 438
BLAST of DCAR_028968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TM59 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 534.643 bits (1376), Expect = 0.000e+0
Identity = 281/438 (64.16%), Postives = 351/438 (80.14%), Query Frame = 0
Match: A0A068TM59 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 534.643 bits (1376), Expect = 0.000e+0
Identity = 281/438 (64.16%), Postives = 351/438 (80.14%), Query Frame = 0
Query: 1 MGSACCVAAKDRTITNGSSREIVQRNVRNSPSWSFRWDNRRRVAGEETSLTWSSDGISRNDGLDFKSRTTVGSAYASEEGSPINSSQNLMWQKSPVAEGNRGTLTIPPSDPPVSGNSMEVKDSRASPTISDLSTTKMSPSMRSVSSFSASPLSSKSHVLPLSSTPSRWPRRSPGHQLLRQVSDSRIRRLKSPSFSISEEGSPFVLPGWSYESIGMSQGGSSDNWAIPEFTELMPTSHRERWSFDSDSMGMIRHKLSRSSGRSFSSPPTEVKTCGLCAKLITQRSSWGSQKIMANNELAVHAVLICGHVYHAECLEKMTPEVSKYDPACPVCTLGEKQAFKLSEKAMRAEMDLMTRISKKLRSRVVGSDLSSESVVFDRQRSSGLESRGYKLSTSSSMKSSFAKPFFKRRFSFGSKGSKSPSENHSTRKSGLFWSKSSK 438
MGS CCVAAKDRT+TNGS+ EI+ RN+R+SPSWSFRWDNR RV GEETS+ W SDG++RND LD KS T+ + +ASEEGSP++S Q+L+WQKSPV++ N G + SDP NS +V++S ASP +S S K+SPS SVSS S SPLSS+SH LP SSTPSRWPRRSPGHQLLRQVSDS + +KSP+ S+SEE S F+LPGWS+ES S GGSSD+W+ P F ++M TS RERWSFDS+++G +R K++RSSGR+ S ++++CG+CAKL+T++SSWGSQKI+A NELAV AVLICGHVYHAECLE MT +++KYDPACP+CT GEKQA K+SEKA+RAE +L TR K+ R+R+ SDL+S+ V FDRQ+SSG + RG K+S+SSSMK S AKPF +R FSFGSKGS+S SENHS+ K G FW+KS K
Sbjct: 1 MGSVCCVAAKDRTVTNGSTSEIMHRNIRHSPSWSFRWDNRVRVVGEETSVNWISDGVTRNDPLDVKSGPTIETTHASEEGSPLDSFQSLVWQKSPVSDVNNGATRLTTSDPLTCTNSTDVRESTASPAVSCPSPVKLSPSAPSVSSLSTSPLSSQSHPLPASSTPSRWPRRSPGHQLLRQVSDSLVPTIKSPTLSVSEETSSFMLPGWSHESTRASHGGSSDSWSTPTFPDIMSTSRRERWSFDSETLGFVRDKITRSSGRN-SGYSFDLQSCGICAKLLTEKSSWGSQKIIATNELAVVAVLICGHVYHAECLENMTSDINKYDPACPICTFGEKQAQKMSEKALRAEFELKTR--KRSRNRIADSDLNSDLVAFDRQKSSGHDGRGPKMSSSSSMKGSLAKPFLRRHFSFGSKGSRSMSENHSSWKRGFFWAKSRK 435
BLAST of DCAR_028968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VSY3 ((uncharacterized protein LOC113726280 isoform X2 {ECO:0000313|RefSeq:XP_027105710.1, ECO:0000313|RefSeq:XP_027105711.1}))
HSP 1 Score: 534.643 bits (1376), Expect = 0.000e+0
Identity = 281/438 (64.16%), Postives = 351/438 (80.14%), Query Frame = 0
Match: A0A6P6VSY3 ((uncharacterized protein LOC113726280 isoform X2 {ECO:0000313|RefSeq:XP_027105710.1, ECO:0000313|RefSeq:XP_027105711.1}))
HSP 1 Score: 534.643 bits (1376), Expect = 0.000e+0
Identity = 281/438 (64.16%), Postives = 351/438 (80.14%), Query Frame = 0
Query: 1 MGSACCVAAKDRTITNGSSREIVQRNVRNSPSWSFRWDNRRRVAGEETSLTWSSDGISRNDGLDFKSRTTVGSAYASEEGSPINSSQNLMWQKSPVAEGNRGTLTIPPSDPPVSGNSMEVKDSRASPTISDLSTTKMSPSMRSVSSFSASPLSSKSHVLPLSSTPSRWPRRSPGHQLLRQVSDSRIRRLKSPSFSISEEGSPFVLPGWSYESIGMSQGGSSDNWAIPEFTELMPTSHRERWSFDSDSMGMIRHKLSRSSGRSFSSPPTEVKTCGLCAKLITQRSSWGSQKIMANNELAVHAVLICGHVYHAECLEKMTPEVSKYDPACPVCTLGEKQAFKLSEKAMRAEMDLMTRISKKLRSRVVGSDLSSESVVFDRQRSSGLESRGYKLSTSSSMKSSFAKPFFKRRFSFGSKGSKSPSENHSTRKSGLFWSKSSK 438
MGS CCVAAKDRT+TNGS+ EI+ RN+R+SPSWSFRWDNR RV GEETS+ W SDG++RND LD KS T+ + +ASEEGSP++S Q+L+WQKSPV++ N G + SDP NS +V++S ASP +S S K+SPS SVSS S SPLSS+SH LP SSTPSRWPRRSPGHQLLRQVSDS + +KSP+ S+SEE S F+LPGWS+ES S GGSSD+W+ P F ++M TS RERWSFDS+++G +R K++RSSGR+ S ++++CG+CAKL+T++SSWGSQKI+A NELAV AVLICGHVYHAECLE MT +++KYDPACP+CT GEKQA K+SEKA+RAE +L TR K+ R+R+ SDL+S+ V FDRQ+SSG + RG K+S+SSSMK S AKPF +R FSFGSKGS+S SENHS+ K G FW+KS K
Sbjct: 1 MGSVCCVAAKDRTVTNGSTSEIMHRNIRHSPSWSFRWDNRVRVVGEETSVNWISDGVTRNDPLDVKSGPTIETTHASEEGSPLDSFQSLVWQKSPVSDVNNGATRLTTSDPLTCTNSTDVRESTASPAVSCPSPVKLSPSAPSVSSLSTSPLSSQSHPLPASSTPSRWPRRSPGHQLLRQVSDSLVPTIKSPTLSVSEETSSFMLPGWSHESTRASHGGSSDSWSTPTFPDIMSTSRRERWSFDSETLGFVRDKITRSSGRN-SGYSFDLQSCGICAKLLTEKSSWGSQKIIATNELAVVAVLICGHVYHAECLENMTSDINKYDPACPICTFGEKQAQKMSEKALRAEFELKTR--KRSRNRIADSDLNSDLVAFDRQKSSGHDGRGPKMSSSSSMKGSLAKPFLRRHFSFGSKGSRSMSENHSSWKRGFFWAKSRK 435
BLAST of DCAR_028968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BTS6 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 525.013 bits (1351), Expect = 0.000e+0
Identity = 296/440 (67.27%), Postives = 349/440 (79.32%), Query Frame = 0
Match: A0A5J5BTS6 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 525.013 bits (1351), Expect = 0.000e+0
Identity = 296/440 (67.27%), Postives = 349/440 (79.32%), Query Frame = 0
Query: 1 MGSACCVAAKDRTITNGSSREIVQRNVRNSPSWSFRWDNRRRVAGEETSLTWSSDGISRNDGLDFKSRTTVGSAYASEEGSPINSSQNLMWQKSPVAEGNRGTLTIPPSDPPVSGN-SMEVKDSRASPTISDLSTTKMSPSMRSVSSFSASPLSSKSHVLPLSSTPSRWPRRSPGHQLLRQVSDSRIRRLKSPSFSISEEGSPFVLPGWSYESIGMSQGGSSDNWAIPEFTELMPTSHRERWSFDSDSMGMIRHKLSRSSGRSFSSPPTEVKTCGLCAKLITQRSSWGSQKIMANNELAVHAVLICGHVYHAECLEKMTPEVSKYDPACPVCTLGEKQAFKLSEKAMRAEMDLMTRISKKLRSRVVGSDLSSESVVFDRQRSSGLESRGYKLSTSSSMKSSFAKPFFKRRFSFGSKGSKSPSENHSTRKSGLFWSKSSKK 439
MGSACCVAA+DRTITNGS EIV RNVR SPSWSFRWDNR RVAGEE SL SDG+SRNDGL KS T V +AYASEEGSP++S + + WQKSP++EGN +P SD P+S N S E K+S SPT+SD S+ K+SPS+ SVSS SASPLSS++++LP STPSR RRSPGHQLLRQVSDS+I LKSP+FSISEE S FVLPGWS ES S GGSSD+W+IP F+EL TS RERWSFDS+S+G KL+RSS R +SP +++TCG C+KL+T++SSW SQKI+A NELAV AVLICGHVYHAECLE MTPE++KYDPACPVC+ GEKQ KLSEKA+RAEMDL R +K+ R+RVV SDL +SVVFDRQ+SSG +G KLS+SSSMKSS +PF +R FSFGSKG +S SE+ S K G FWSKS K+
Sbjct: 1 MGSACCVAARDRTITNGSGSEIVHRNVRYSPSWSFRWDNRGRVAGEENSLN-RSDGVSRNDGLHIKSGTAVETAYASEEGSPLDSFRTVAWQKSPISEGNVEIFRLPSSDQPISRNFSTEAKESTDSPTVSDPSSVKLSPSVHSVSSLSASPLSSQNNMLPAGSTPSRRARRSPGHQLLRQVSDSQIPGLKSPNFSISEEASTFVLPGWSNESTRGSHGGSSDSWSIPAFSELTATSRRERWSFDSESLGFNHDKLTRSSSRISTSPSIDLQTCGFCSKLLTEKSSWSSQKIIATNELAVVAVLICGHVYHAECLENMTPEINKYDPACPVCSFGEKQVLKLSEKALRAEMDLKARNNKRSRNRVVDSDLDGDSVVFDRQKSSGHGGKGLKLSSSSSMKSSLGRPFLRRHFSFGSKGIRSSSESRSNWKRGFFWSKSIKE 439
BLAST of DCAR_028968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RHG0 ((E3 ubiquitin-protein like {ECO:0000313|EMBL:PSS29453.1}))
HSP 1 Score: 520.776 bits (1340), Expect = 0.000e+0
Identity = 283/439 (64.46%), Postives = 340/439 (77.45%), Query Frame = 0
Match: A0A2R6RHG0 ((E3 ubiquitin-protein like {ECO:0000313|EMBL:PSS29453.1}))
HSP 1 Score: 520.776 bits (1340), Expect = 0.000e+0
Identity = 283/439 (64.46%), Postives = 340/439 (77.45%), Query Frame = 0
Query: 1 MGSACCVAAKDRTITNGSSREIVQRNVRNSPSWSFRWDNRRRVAGEETSLTWSSDGISRNDGLDFKSRTTVGSAYASEEGSPINSSQNLMWQKSPVAEGNRGTLTIPPSDPPVSGN-SMEVKDSRASPTISDLSTTKMSPSMRSVSSFSASPLSSKSHVLPLSSTPSRWPRRSPGHQLLRQVSDSRIRRLKSPSFSISEEGSPFVLPGWSYESIGMSQGGSSDNWAIPEFTELMPTSHRERWSFDSDSMGMIRHKLSRSSGRSFSSPPTEVKTCGLCAKLITQRSSWGSQKIMANNELAVHAVLICGHVYHAECLEKMTPEVSKYDPACPVCTLGEKQAFKLSEKAMRAEMDLMTRISKKLRSRVVGSDLSSESVVFDRQRSSGLESRGYKLSTSSSMKSSFAKPFFKRRFSFGSKGSKSPSENHSTRKSGLFWSKSSK 438
MGSACCVAA+DRTITNG+S E++QRNVR SPSWSFRWDNR RVAGEETS+ SDGISR DG D KS TV + YASEEGSP++S + L WQKSP++E N G L +P SD S N EVK+ SP +SD S+TK+SPS+ S+S S SPLSS++H+L +STPSR PR PGHQLLRQVSD+RI KS + SISEE S F+ PGWS ES G S GSSD W+IP F++LM T RERWSFDS+S+G K +RSSG+ SP +V+TCG+C+KL+T++SSWGSQKI+A NELAV A+LICGHVYHAECLE MTPE++KYDPACPVCT GEKQ KLSEKA+RAEMD R +K+ R+++V DL +SVVFD Q+SSG +G KL +SSSMKSS KPF ++ FSFGSKG++S S NHSTRK G FWSKSSK
Sbjct: 1 MGSACCVAARDRTITNGASSEVLQRNVRYSPSWSFRWDNRGRVAGEETSVNCFSDGISRTDGSDVKSGATVETVYASEEGSPVDSFRTLAWQKSPISERNSGILRLPSSDQSNSRNFPTEVKEPTESPRVSDPSSTKLSPSVHSISPLSTSPLSSRNHLLRPTSTPSRLPRCHPGHQLLRQVSDARIPGHKSQNLSISEESS-FLFPGWSNESTGGSNLGSSDGWSIPAFSDLMATPRRERWSFDSESLGFDPEK-TRSSGQLSVSPSIDVRTCGVCSKLLTEKSSWGSQKIIATNELAVVAILICGHVYHAECLESMTPEINKYDPACPVCTFGEKQVLKLSEKALRAEMDSKAR-NKRSRNQIVSRDLDGDSVVFDGQKSSGHGGKGLKLISSSSMKSSLGKPFLRQHFSFGSKGTRSLSVNHSTRKKGFFWSKSSK 436
BLAST of DCAR_028968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VRM5 ((uncharacterized protein LOC113726280 isoform X1 {ECO:0000313|RefSeq:XP_027105706.1, ECO:0000313|RefSeq:XP_027105707.1}))
HSP 1 Score: 518.079 bits (1333), Expect = 2.684e-180
Identity = 281/470 (59.79%), Postives = 351/470 (74.68%), Query Frame = 0
Match: A0A6P6VRM5 ((uncharacterized protein LOC113726280 isoform X1 {ECO:0000313|RefSeq:XP_027105706.1, ECO:0000313|RefSeq:XP_027105707.1}))
HSP 1 Score: 518.079 bits (1333), Expect = 2.684e-180
Identity = 281/470 (59.79%), Postives = 351/470 (74.68%), Query Frame = 0
Query: 1 MGSACCVAAKDRTITNGSSREIVQRNVRNSPSWSFRWDNRRRVAGEETSLTWSSDGISRNDGLDFKSRTTVGSAYASEEGSPINSSQNLMWQKSPVAEGNRGTLTIPPS--------------------------------DPPVSGNSMEVKDSRASPTISDLSTTKMSPSMRSVSSFSASPLSSKSHVLPLSSTPSRWPRRSPGHQLLRQVSDSRIRRLKSPSFSISEEGSPFVLPGWSYESIGMSQGGSSDNWAIPEFTELMPTSHRERWSFDSDSMGMIRHKLSRSSGRSFSSPPTEVKTCGLCAKLITQRSSWGSQKIMANNELAVHAVLICGHVYHAECLEKMTPEVSKYDPACPVCTLGEKQAFKLSEKAMRAEMDLMTRISKKLRSRVVGSDLSSESVVFDRQRSSGLESRGYKLSTSSSMKSSFAKPFFKRRFSFGSKGSKSPSENHSTRKSGLFWSKSSK 438
MGS CCVAAKDRT+TNGS+ EI+ RN+R+SPSWSFRWDNR RV GEETS+ W SDG++RND LD KS T+ + +ASEEGSP++S Q+L+WQKSPV++ N G + S DP NS +V++S ASP +S S K+SPS SVSS S SPLSS+SH LP SSTPSRWPRRSPGHQLLRQVSDS + +KSP+ S+SEE S F+LPGWS+ES S GGSSD+W+ P F ++M TS RERWSFDS+++G +R K++RSSGR+ S ++++CG+CAKL+T++SSWGSQKI+A NELAV AVLICGHVYHAECLE MT +++KYDPACP+CT GEKQA K+SEKA+RAE +L TR K+ R+R+ SDL+S+ V FDRQ+SSG + RG K+S+SSSMK S AKPF +R FSFGSKGS+S SENHS+ K G FW+KS K
Sbjct: 1 MGSVCCVAAKDRTVTNGSTSEIMHRNIRHSPSWSFRWDNRVRVVGEETSVNWISDGVTRNDPLDVKSGPTIETTHASEEGSPLDSFQSLVWQKSPVSDVNNGATRLTTSGLLLRKFDGDLVDEDQRVRNLVKDFRRIFQGRDPLTCTNSTDVRESTASPAVSCPSPVKLSPSAPSVSSLSTSPLSSQSHPLPASSTPSRWPRRSPGHQLLRQVSDSLVPTIKSPTLSVSEETSSFMLPGWSHESTRASHGGSSDSWSTPTFPDIMSTSRRERWSFDSETLGFVRDKITRSSGRN-SGYSFDLQSCGICAKLLTEKSSWGSQKIIATNELAVVAVLICGHVYHAECLENMTSDINKYDPACPICTFGEKQAQKMSEKALRAEFELKTR--KRSRNRIADSDLNSDLVAFDRQKSSGHDGRGPKMSSSSSMKGSLAKPFLRRHFSFGSKGSRSMSENHSSWKRGFFWAKSRK 467
BLAST of DCAR_028968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6W9T9 ((uncharacterized protein LOC113731256 isoform X1 {ECO:0000313|RefSeq:XP_027112212.1, ECO:0000313|RefSeq:XP_027112213.1}))
HSP 1 Score: 518.079 bits (1333), Expect = 2.929e-180
Identity = 283/470 (60.21%), Postives = 351/470 (74.68%), Query Frame = 0
Match: A0A6P6W9T9 ((uncharacterized protein LOC113731256 isoform X1 {ECO:0000313|RefSeq:XP_027112212.1, ECO:0000313|RefSeq:XP_027112213.1}))
HSP 1 Score: 518.079 bits (1333), Expect = 2.929e-180
Identity = 283/470 (60.21%), Postives = 351/470 (74.68%), Query Frame = 0
Query: 1 MGSACCVAAKDRTITNGSSREIVQRNVRNSPSWSFRWDNRRRVAGEETSLTWSSDGISRNDGLDFKSRTTVGSAYASEEGSPINSSQNLMWQKSPVAEGNRGTLTIPPS--------------------------------DPPVSGNSMEVKDSRASPTISDLSTTKMSPSMRSVSSFSASPLSSKSHVLPLSSTPSRWPRRSPGHQLLRQVSDSRIRRLKSPSFSISEEGSPFVLPGWSYESIGMSQGGSSDNWAIPEFTELMPTSHRERWSFDSDSMGMIRHKLSRSSGRSFSSPPTEVKTCGLCAKLITQRSSWGSQKIMANNELAVHAVLICGHVYHAECLEKMTPEVSKYDPACPVCTLGEKQAFKLSEKAMRAEMDLMTRISKKLRSRVVGSDLSSESVVFDRQRSSGLESRGYKLSTSSSMKSSFAKPFFKRRFSFGSKGSKSPSENHSTRKSGLFWSKSSK 438
MGS CCVAAKDRT+TNGS+ EI+ RN+R+SPSWSFRWDNR RV GEETS+ W SDG++RND D KS T+ + +ASEEGSP++S ++L+WQKSPV++ N G + S DP NS +V++S ASP +S S K+SPS SVSS S SPLSS+SH LP SSTPSRWPRRSPGHQLLRQVSDS I +KSP+ S+SEE S FVLPGWS+ES S GGSSD+W+ P F ++M TS RERWSFDS+++G +R K++RSSGR+ S ++++CG+CAKL+T++SSWGSQKI+A NELAV AVLICGHVYHAECLE MTP+V+KYDPACP+CT GEKQA K+SEKA+RAE +L TR K+ R+R+ SDL+S+ V FDRQ+SSG + RG K+S+SSSMK S AKPF +R FSFGSKGS+S SENHS+ K G FW+KS K
Sbjct: 1 MGSVCCVAAKDRTVTNGSTSEIMHRNIRHSPSWSFRWDNRVRVVGEETSVNWISDGVTRNDPPDVKSGPTIETTHASEEGSPLDSFRSLVWQKSPVSDVNNGVTRLTTSGLLLRKFDGDLVDEDQRVRNLVKDFRRIFQGRDPLTCTNSTDVRESTASPAVSCPSPVKLSPSAPSVSSLSTSPLSSRSHPLPASSTPSRWPRRSPGHQLLRQVSDSLIPTIKSPTLSVSEETSSFVLPGWSHESTRASHGGSSDSWSTPTFPDIMSTSRRERWSFDSETLGFVRDKITRSSGRN-SGYSFDLQSCGICAKLLTEKSSWGSQKIIATNELAVVAVLICGHVYHAECLENMTPDVNKYDPACPICTFGEKQAQKMSEKALRAEFELKTR--KRSRNRIADSDLNSDLVAFDRQKSSGRDGRGPKMSSSSSMKDSLAKPFLRRHFSFGSKGSRSMSENHSSWKRGFFWAKSRK 467
BLAST of DCAR_028968 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A124SCA8 ((Zinc finger, RING/FYVE/PHD-type {ECO:0000313|EMBL:KVH93222.1}))
HSP 1 Score: 514.998 bits (1325), Expect = 1.130e-179
Identity = 285/436 (65.37%), Postives = 338/436 (77.52%), Query Frame = 0
Match: A0A124SCA8 ((Zinc finger, RING/FYVE/PHD-type {ECO:0000313|EMBL:KVH93222.1}))
HSP 1 Score: 514.998 bits (1325), Expect = 1.130e-179
Identity = 285/436 (65.37%), Postives = 338/436 (77.52%), Query Frame = 0
Query: 1 MGSACCVAAKDRTITNGSSREIVQRNVRNSPSWSFRWDNRRRVAGEETSLTWSSDGISRNDGLDFKSRTTVGSAYASEEGSPINSSQNLMWQKSPVAEGNRGTLTIPPSDPPVSGNSMEVKDSRASPTISDLSTTKMSPSMRSVSSFSASPLSS-KSHVLPLSSTPSRWPRRSPGHQLLRQVSDSRIRRLKSPSFSISEEGSPFVLPGWSYESIGMSQGGSSDNWAIPEFTELMPTSHRERWSFDSDSMGMIRHKLSRSSGRSFSSPPTEVKTCGLCAKLITQRSSWGSQKIMANNELAVHAVLICGHVYHAECLEKMTPEVSKYDPACPVCTLGEKQAFKLSEKAMRAEMDLMTRISKKLRSRVVGSDLSSESVVFDRQRSSGLESRGYKLSTSSSMKSSFAKPFFKRRFSFGSKGSKSPSENHSTRKSGLFWSK 435
MGSACCVAA+DRTITNGSS +++ RNVR SPSWS RWDNRRRVAGEETS+ WSSDG+ ND LD KS+TTVG+AYASEEGSP+ S +NL WQKS +EG T+P SD VS N EVK SR + S+ S TKMSPS SVSS SASPLSS + H LP PSRW RSPGH L+RQVSDSRI +KSP+FSISEEGSPF+ GWS ES S GGSSD W++P F+ELM TSHRERWSFDS+S+ R K+SRSSGR SSP +++TCG+C+KL+T+RS WGSQKI+A NELAV A+LICGHVYHAECLE MT E++KYDP CPVCT GEKQA KLSEKA+RA+++L +++KK RSRVV D++ V+FD + SG E R K+S+SSSMK+S KPF KR FSFGSKGS+S SE +RK G FW+K
Sbjct: 1 MGSACCVAARDRTITNGSSSDVIPRNVRYSPSWSVRWDNRRRVAGEETSMNWSSDGVGTNDRLDNKSQTTVGTAYASEEGSPLESFRNLTWQKSSPSEG----YTVPQSDQSVSKNPSEVKVSRETQLASEPSPTKMSPSTHSVSSLSASPLSSSQGHFLP----PSRWHGRSPGHHLMRQVSDSRIPGMKSPNFSISEEGSPFMFAGWSNESNRGSHGGSSDGWSVPAFSELMATSHRERWSFDSESLNFSRDKISRSSGRVSSSPSIDMQTCGVCSKLLTERSCWGSQKIIATNELAVVAILICGHVYHAECLENMTAEINKYDPTCPVCTFGEKQALKLSEKALRADLELKAKMNKKSRSRVVDGDMNDGIVMFDHDKRSGHEGRIPKISSSSSMKTSVGKPFLKRHFSFGSKGSRSLSETSFSRKKGFFWAK 428
| Match Name | Stats | Description |
|---|---|---|
| A0A7J7H2R2 | E-Value: 0.000e+0, PID: 65.91 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| A0A6P6WB13 | E-Value: 0.000e+0, PID: 64.61 | (uncharacterized protein LOC113731256 isoform X2 {... [more] |
| A0A4S4ELD7 | E-Value: 0.000e+0, PID: 65.76 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| A0A068TM59 | E-Value: 0.000e+0, PID: 64.16 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| A0A6P6VSY3 | E-Value: 0.000e+0, PID: 64.16 | (uncharacterized protein LOC113726280 isoform X2 {... [more] |
| A0A5J5BTS6 | E-Value: 0.000e+0, PID: 67.27 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| A0A2R6RHG0 | E-Value: 0.000e+0, PID: 64.46 | (E3 ubiquitin-protein like {ECO:0000313|EMBL:PSS29... [more] |
| A0A6P6VRM5 | E-Value: 2.684e-180, PID: 59.79 | (uncharacterized protein LOC113726280 isoform X1 {... [more] |
| A0A6P6W9T9 | E-Value: 2.929e-180, PID: 60.21 | (uncharacterized protein LOC113731256 isoform X1 {... [more] |
| A0A124SCA8 | E-Value: 1.130e-179, PID: 65.37 | (Zinc finger, RING/FYVE/PHD-type {ECO:0000313|EMBL... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |