Resource Type:
Polypeptide
Name:
DCAR_030291
Identifier:
DCAR_030291.mRNA-protein
Sequence:
MGGVEDDQPPLKRVKVAAKHLRGFTNGYSTKESTSSLSLMMARPLSSQGD
DEILGTKGIVKKVELVRIITEALYSLGYERTGAHLEEESGIHLQSSVVKL
FMQHILDGNWDKSINTLHKFSQLDETTIKSASFIILEQKFLELLDDEKLM
DALKTLRTEIAPLCINSNRIHNLSARIVSPFQRDQTEIVANTAMKAKSRS
MLLEELQRIFPPTVIIPERRLVHLVEQALELQRDACIFHNSLVGDMSLYT
DHQCGRDQIPSHTLQILQEHSDEVWFLQFSHNGKYLASASGDHIVIIWEV
NSDGRFTLKNRLSGHQKSIFHVSWSPDDLQLLTCGVQETARRWDVSSGEC
LHVYEKNGVSIVSCEWAPGGKEIYFGFTDKSISMWDLEGKEVECWKGQRI
VSISDLGVTSDGKKIITICKNSVILLFDKELNVEKFIEEDETITSFSLSS
DNKFLLVSLVNKEIHLWKIEGHTKLVGKYKGHKRTRYVLKACFGGFEQSF
IACGSEDAQVKMKPKGCQSNGVHYINGGTPGENKGS*
Sequence Length:
537
Sequence Checksum:
578cba865402d0514a40ea48211cb035
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_030291, derives from mRNA, DCAR_030291. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_030291 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_030291 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BKZ1 ((Putative Transducin family protein / WD-40 repeat family protein isoform 2 {ECO:0000313|EMBL:MPA69499.1}))
HSP 1 Score: 719.924 bits (1857), Expect = 0.000e+0
Identity = 366/581 (62.99%), Postives = 432/581 (74.35%), Query Frame = 0
Match: A0A5B7BKZ1 ((Putative Transducin family protein / WD-40 repeat family protein isoform 2 {ECO:0000313|EMBL:MPA69499.1}))
HSP 1 Score: 719.924 bits (1857), Expect = 0.000e+0
Identity = 366/581 (62.99%), Postives = 432/581 (74.35%), Query Frame = 0
Query: 1 MGGVEDDQPPLKRVKVAAKHLRGFTNGYSTKE-STSSLSLMMARPLSSQGDDEILGTKGIVKKVELVRIITEALYSLGYERTGAHLEEESGIHLQSSVVKLFMQHILDGNWDKSINTLHKFSQLDETTIKSASFIILEQKFLELLDDEKLMDALKTLRTEIAPLCINSNRIHNLSARIVSPFQRDQTEIVANTAMKAKSRSMLLEELQRIFPPTVIIPERRLVHLVEQALELQRDACIFHNSLVGDMSLYTDHQCGRDQIPSHTLQILQEHSDEVWFLQFSHNGKYLASASGDHIVIIWEVNSDGRFTLKNRLSGHQKSIFHVSWSPDDLQLLTCGVQETARRWDVSSGECLHVYEKNGVSIVSCEWAPGGKEIYFGFTDKSISMWDLEGKEVECWKGQRIVSISDLGVTSDGKKIITICKNSVILLFDKELNVEKFIEEDETITSFSLSSDNKFLLVSLVNKEIHLWKIEGHTKLVGKYKGHKRTRYVLKACFGGFEQSFIACGSEDAQV---------------------------------------------------KMKPKGCQSNGVHYINGGT 529
MGGVEDD+PP KRVK ++ LR +N S +E +T SLS +MARPL+SQGD++I+G+KG++KK+E VRII LYS GY++TGA LEEESGI L SSVV LFMQ ILDGNWD+S+ TLHK +DET IK ASFIILEQKF ELL+ EK+MDALKTLRTEIAPLCIN+NR+H LS+ IVSP Q + KSR LLEELQ++ PPTV+IPERRL HLVEQAL LQ DAC+FHNSL ++SLYTDHQCGRDQIPS TLQ+L+EHSDEVWFL+FSHNGKYLAS+S D IIWEVN +GR +LK+RLSGHQK + HVSWSPDD QLLTCGV+E R WDV SGECLHVYEK G+ ++SC W+P GK I+ G TDKSI MWDL+GKE+ECWKGQR V ISDL VTS+GK IITIC+ S ILL D+E EKFIEED+TITSFSLS D+K LLVSL+N+EIHLW +EG KLV KYKGHKR+R+V+++CFGG EQ+F+A GSED+QV K+K KG SNGVHY NGG+
Sbjct: 1 MGGVEDDEPPSKRVKESSGELRDLSNNTSVRELATCSLSDLMARPLASQGDEDIVGSKGVIKKLEFVRIIAATLYSFGYKKTGALLEEESGIPLHSSVVNLFMQQILDGNWDESVATLHKIGLIDETIIKLASFIILEQKFFELLEGEKVMDALKTLRTEIAPLCINNNRVHELSSCIVSPSQHALVGFPGQDIARTKSRPKLLEELQKLLPPTVMIPERRLEHLVEQALNLQLDACMFHNSLHREVSLYTDHQCGRDQIPSQTLQLLKEHSDEVWFLRFSHNGKYLASSSRDQSAIIWEVNVNGRVSLKHRLSGHQKPVSHVSWSPDDHQLLTCGVEEAVRCWDVCSGECLHVYEKGGLGLLSCAWSPDGKWIFSGVTDKSICMWDLDGKELECWKGQRTVRISDLEVTSNGKWIITICRESAILLLDRETKTEKFIEEDQTITSFSLSRDDKCLLVSLLNQEIHLWNVEGDIKLVAKYKGHKRSRFVVRSCFGGLEQTFVASGSEDSQVYIWQRGSGELIEALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLNQLKVKRKGTHSNGVHYCNGGS 581
BLAST of DCAR_030291 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6S9C4 ((WD repeat-containing protein 26 homolog {ECO:0000313|RefSeq:XP_027062724.1, ECO:0000313|RefSeq:XP_027062725.1}))
HSP 1 Score: 719.539 bits (1856), Expect = 0.000e+0
Identity = 346/581 (59.55%), Postives = 422/581 (72.63%), Query Frame = 0
Match: A0A6P6S9C4 ((WD repeat-containing protein 26 homolog {ECO:0000313|RefSeq:XP_027062724.1, ECO:0000313|RefSeq:XP_027062725.1}))
HSP 1 Score: 719.539 bits (1856), Expect = 0.000e+0
Identity = 346/581 (59.55%), Postives = 422/581 (72.63%), Query Frame = 0
Query: 1 MGGVEDDQPPLKRVKVAAKHLRGFTNGYSTKESTSSLSL-MMARPLSSQGDDEILGTKGIVKKVELVRIITEALYSLGYERTGAHLEEESGIHLQSSVVKLFMQHILDGNWDKSINTLHKFSQLDETTIKSASFIILEQKFLELLDDEKLMDALKTLRTEIAPLCINSNRIHNLSARIVSPFQRDQTEIVANTAMKAKSRSMLLEELQRIFPPTVIIPERRLVHLVEQALELQRDACIFHNSLVGDMSLYTDHQCGRDQIPSHTLQILQEHSDEVWFLQFSHNGKYLASASGDHIVIIWEVNSDGRFTLKNRLSGHQKSIFHVSWSPDDLQLLTCGVQETARRWDVSSGECLHVYEKNGVSIVSCEWAPGGKEIYFGFTDKSISMWDLEGKEVECWKGQRIVSISDLGVTSDGKKIITICKNSVILLFDKELNVEKFIEEDETITSFSLSSDNKFLLVSLVNKEIHLWKIEGHTKLVGKYKGHKRTRYVLKACFGGFEQSFIACGSEDAQ---------------------------------------------------VKMKPKGCQSNGVHYINGGT 529
MGGVEDD+PP KRV++++ L G +NG S +E S S +MARPL+S+GDDE++G KG+V+KVE VRII EALYSLGY++TGAHLEEESGI L SS V FMQ +L+G WD+S+ TLH+ +DE+ IK ASF+ILEQKF ELLD E MDALKTLRTEIAPLC+NS+R+ LS+ IVSP D + K RS LLEELQR+ PPTV+IPE+RLVHLVEQAL+LQRDAC FHNSLV +MSL TDHQCGRD IPS TLQIL EHSDEVWFLQFSHNG+YLAS+S D VIIWEV DGR +LK +L+GHQK + +SWSPDD QLLTCGV+E RRWD S+GECLH YEK G+ +VSC WAP G+ ++ G DKS+ MWD++GKE+ECWKGQR +SDLG+TSDGK+I+++CK++ ILLF E EK IEED+ I SF+LS D K LLVSL+N+EIHLW IEGH +L+ KYKGHKR+R+V+++CFGG EQ+F+A GSED+Q VKMK G +NGVHY NGG+
Sbjct: 1 MGGVEDDEPPSKRVRISSCKLEGLSNGTSLREPASGASCDLMARPLASEGDDEVVGPKGVVRKVEFVRIIAEALYSLGYKKTGAHLEEESGIPLHSSAVNSFMQQVLEGKWDESVVTLHRIGLVDESIIKLASFVILEQKFFELLDGENFMDALKTLRTEIAPLCVNSDRVRELSSCIVSPSHCDLFRFSGKDTITVKPRSKLLEELQRLLPPTVMIPEKRLVHLVEQALDLQRDACKFHNSLVEEMSLLTDHQCGRDHIPSQTLQILNEHSDEVWFLQFSHNGQYLASSSNDRTVIIWEVKVDGRVSLKRKLAGHQKPVSFISWSPDDHQLLTCGVEEVVRRWDASTGECLHTYEKGGLGVVSCSWAPDGRTVFTGLADKSLIMWDIDGKELECWKGQRTSKMSDLGITSDGKQIVSVCKDTSILLFGWESKAEKIIEEDQIIISFALSRDGKSLLVSLLNEEIHLWNIEGHVRLLAKYKGHKRSRFVIRSCFGGLEQAFVASGSEDSQVYIWHRSSGELVMTLPGHSGTVNCVSWNPSNPHMLASASDDRTIRIWGLKEVKMKQNGAHTNGVHYSNGGS 581
BLAST of DCAR_030291 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068VAJ6 ((Uncharacterized protein {ECO:0000313|EMBL:CDP17860.1}))
HSP 1 Score: 715.301 bits (1845), Expect = 0.000e+0
Identity = 347/588 (59.01%), Postives = 423/588 (71.94%), Query Frame = 0
Match: A0A068VAJ6 ((Uncharacterized protein {ECO:0000313|EMBL:CDP17860.1}))
HSP 1 Score: 715.301 bits (1845), Expect = 0.000e+0
Identity = 347/588 (59.01%), Postives = 423/588 (71.94%), Query Frame = 0
Query: 1 MGGVEDDQPPLKRVKVAAKHLRGFTNGYSTKESTSSLSL-MMARPLSSQGDDEILGTKGIVKKVELVRIITEALYSLGYERTGAHLEEESGIHLQSSVVKLFMQHILDGNWDKSINTLHKFSQLDETTIKSASFIILEQKFLELLDDEKLMDALKTLRTEIAPLCINSNRIHNLSARIVSPFQRDQTEIVANTAMKAKSRSMLLEELQRIFPPTVIIPERRLVHLVEQALELQRDACIFHNSLVGDMSLYTDHQCGRDQIPSHTLQ-------ILQEHSDEVWFLQFSHNGKYLASASGDHIVIIWEVNSDGRFTLKNRLSGHQKSIFHVSWSPDDLQLLTCGVQETARRWDVSSGECLHVYEKNGVSIVSCEWAPGGKEIYFGFTDKSISMWDLEGKEVECWKGQRIVSISDLGVTSDGKKIITICKNSVILLFDKELNVEKFIEEDETITSFSLSSDNKFLLVSLVNKEIHLWKIEGHTKLVGKYKGHKRTRYVLKACFGGFEQSFIACGSEDAQ---------------------------------------------------VKMKPKGCQSNGVHYINGGT 529
MGGVEDD+PP KRV++++ L G +NG S +E S S +MARPL+S+GDDE++G KG+V+KVE VRII EALYSLGY++TGAHLEEESGI L SS V FMQ +L+G WD+S+ TLH+ +DE+ IK ASF+ILEQKF ELLD E MDALKTLRTEIAPLC+NS+R+ LS+ IVSP D + K RS LLEELQR+ PPTV+IPE+RLVHLVEQAL+LQRDAC FHNSLV +MSL TDHQCGRD IPS TLQ IL EHSDEVWFLQFSHNG+YLAS+S D VIIWEV DGR +LK +L+GHQK + +SWSPDD QLLTCGV+E RRWD S+GECLH YEK G+ +VSC WAP G+ ++ G DKS+ MWD++GKE+ECWKGQR +SDLG+TSDGK+I+++CK++ ILLF E EK IEED+TI SF+LS D K LLVSL+N+EIHLW IEGH +L+ KYKGHKR+R+V+++CFGG EQ+F+A GSED+Q VKMK G +NGVHY NGG+
Sbjct: 1 MGGVEDDEPPSKRVRISSCKLEGLSNGTSLREPASGASCDLMARPLASEGDDEVVGPKGVVRKVEFVRIIAEALYSLGYKKTGAHLEEESGIPLHSSAVNSFMQQVLEGKWDESVVTLHRIGLVDESIIKLASFVILEQKFFELLDGENFMDALKTLRTEIAPLCVNSDRVRELSSCIVSPSHCDLFRFSGKDTITVKPRSKLLEELQRLLPPTVMIPEKRLVHLVEQALDLQRDACKFHNSLVEEMSLLTDHQCGRDHIPSQTLQACSNFIIILNEHSDEVWFLQFSHNGQYLASSSNDRTVIIWEVKVDGRVSLKRKLAGHQKPVSFISWSPDDHQLLTCGVEEVVRRWDASTGECLHTYEKGGLGVVSCSWAPDGRTVFTGLADKSLIMWDIDGKELECWKGQRTSKMSDLGITSDGKQIVSVCKDTTILLFGWESKAEKIIEEDQTIISFALSRDGKSLLVSLLNEEIHLWNIEGHVRLLAKYKGHKRSRFVIRSCFGGLEQAFVASGSEDSQVYIWHRSSGELVMTLPGHSGTVNCVSWNPSNPHMLASASDDRTIRIWGLKEVKMKHNGAHTNGVHYCNGGS 588
BLAST of DCAR_030291 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5TCD0 ((WD repeat-containing protein 26-like {ECO:0000313|RefSeq:XP_021824851.1, ECO:0000313|RefSeq:XP_021824852.1}))
HSP 1 Score: 709.523 bits (1830), Expect = 0.000e+0
Identity = 357/582 (61.34%), Postives = 430/582 (73.88%), Query Frame = 0
Match: A0A6P5TCD0 ((WD repeat-containing protein 26-like {ECO:0000313|RefSeq:XP_021824851.1, ECO:0000313|RefSeq:XP_021824852.1}))
HSP 1 Score: 709.523 bits (1830), Expect = 0.000e+0
Identity = 357/582 (61.34%), Postives = 430/582 (73.88%), Query Frame = 0
Query: 1 MGGVEDDQPPLKRVKVAAKHLRGFTNGYSTKESTSSLSL-MMARPLSSQGDDEILGTKGIVKKVELVRIITEALYSLGYERTGAHLEEESGIHLQSSVVKLFMQHILDGNWDKSINTLHKFSQLDETTIKSASFIILEQKFLELLDDEKLMDALKTLRTEIAPLCINSNRIHNLSARIVSP-FQRDQTEIVANTAMKAKSRSMLLEELQRIFPPTVIIPERRLVHLVEQALELQRDACIFHNSLVGDMSLYTDHQCGRDQIPSHTLQILQEHSDEVWFLQFSHNGKYLASASGDHIVIIWEVNSDGRFTLKNRLSGHQKSIFHVSWSPDDLQLLTCGVQETARRWDVSSGECLHVYEKNGVSIVSCEWAPGGKEIYFGFTDKSISMWDLEGKEVECWKGQRIVSISDLGVTSDGKKIITICKNSVILLFDKELNVEKFIEEDETITSFSLSSDNKFLLVSLVNKEIHLWKIEGHTKLVGKYKGHKRTRYVLKACFGGFEQSFIACGSEDAQV---------------------------------------------------KMKPKGCQSNGVHYINGGT 529
MGGV D++P KR+K++ LRG +NG S E + S +MARPL+S+GD+E++G+KG++K+VE VR+I +ALYSLGY+++GAHLEEESGI L SSVV LFMQ ILDGNWD S++TL K DE KSASF+ILEQKF ELLDDEK MDALKTLRTEI PLCIN +R+H LS+ IVSP F + +A +AKSR LLE+LQ++ PPTV+I ERRL HLVEQAL LQRDACIFHNSL +MSLYTDH+CGRDQIPS TLQILQ HSDEVWFLQFSHNGKYLAS+S D IIWEV+ +G +LK+RLSGHQK + VSWSPDD QLLTCGV+E RRWDVSSGECLHVYEK G+ +VSC W P GK I+ G +DKSI MW+L+GKE+ECWKGQR + ISDL +TSDGK+II+ C+++ ILL D+E VE IEED+TITSFSLS DN+FLLV+L+N+EIHLW IEG KLV KYKGHKRTR+V+++CFGG EQ+FIA GSED+QV K+K + +SNGVHY NGGT
Sbjct: 1 MGGVGDEEPATKRMKLSPGQLRGLSNGSSITEPVAGSSRDLMARPLTSEGDEEVVGSKGVIKRVEFVRLIAKALYSLGYKKSGAHLEEESGIPLHSSVVTLFMQQILDGNWDGSVDTLKKIGLSDENITKSASFMILEQKFFELLDDEKDMDALKTLRTEIVPLCINGSRVHELSSCIVSPSFGGTPGKNIA----RAKSRPKLLEDLQKLLPPTVMILERRLEHLVEQALVLQRDACIFHNSLNEEMSLYTDHRCGRDQIPSRTLQILQAHSDEVWFLQFSHNGKYLASSSSDRSAIIWEVDVNGCVSLKHRLSGHQKPVSIVSWSPDDHQLLTCGVEEVVRRWDVSSGECLHVYEKPGLGLVSCGWFPDGKWIFSGVSDKSICMWELDGKELECWKGQRTLRISDLEITSDGKQIISTCRDNAILLLDREAKVEILIEEDQTITSFSLSRDNRFLLVNLLNQEIHLWSIEGEIKLVAKYKGHKRTRFVIRSCFGGLEQAFIASGSEDSQVYVWLRGSGELIEALPGHSGAVNCVSWNPTNTHMLASASDDRTIRIWGLNELKVKHRDARSNGVHYCNGGT 578
BLAST of DCAR_030291 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5WSF7 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4304429.1}))
HSP 1 Score: 708.753 bits (1828), Expect = 0.000e+0
Identity = 356/582 (61.17%), Postives = 429/582 (73.71%), Query Frame = 0
Match: A0A6J5WSF7 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4304429.1}))
HSP 1 Score: 708.753 bits (1828), Expect = 0.000e+0
Identity = 356/582 (61.17%), Postives = 429/582 (73.71%), Query Frame = 0
Query: 1 MGGVEDDQPPLKRVKVAAKHLRGFTNGYSTKESTSSLSL-MMARPLSSQGDDEILGTKGIVKKVELVRIITEALYSLGYERTGAHLEEESGIHLQSSVVKLFMQHILDGNWDKSINTLHKFSQLDETTIKSASFIILEQKFLELLDDEKLMDALKTLRTEIAPLCINSNRIHNLSARIVSP-FQRDQTEIVANTAMKAKSRSMLLEELQRIFPPTVIIPERRLVHLVEQALELQRDACIFHNSLVGDMSLYTDHQCGRDQIPSHTLQILQEHSDEVWFLQFSHNGKYLASASGDHIVIIWEVNSDGRFTLKNRLSGHQKSIFHVSWSPDDLQLLTCGVQETARRWDVSSGECLHVYEKNGVSIVSCEWAPGGKEIYFGFTDKSISMWDLEGKEVECWKGQRIVSISDLGVTSDGKKIITICKNSVILLFDKELNVEKFIEEDETITSFSLSSDNKFLLVSLVNKEIHLWKIEGHTKLVGKYKGHKRTRYVLKACFGGFEQSFIACGSEDAQV---------------------------------------------------KMKPKGCQSNGVHYINGGT 529
MGGV D++P KR+K++ LRG +NG S E + S +MARPL+S+GD+E++G+KG++K+VE VR+I +ALYSLGY+++GAHLEEESGI L SSVV LFMQ ILDGNWD S++TL K DE KSASF+ILEQKF ELLDDEK MDALKTLRTEI PLCIN +R+ LS+ IVSP F + +A +AKSR LLE+LQ++ PPTV+I ERRL HLVEQAL LQRDACIFHNSL +MSLYTDH+CGRDQIPS TLQILQ HSDEVWFLQFSHNGKYLAS+S D + IIWEV+ +G +LK+RLSGHQK + VSWSPDD QLLTCGV+E RRWDVSSGECLHVYEK G+ +VSC W P GK I+ G +DKSI MW+L+GKE+ECWKGQR + ISDL +TSDGK+II+ C+++ ILL D+E VE IEED+TITSFSLS DN+FLLV+L+N+EIHLW IEG KLV KYKGHKRTR+V+++CFGG EQ+FIA GSED+QV K+K + SNGVHY NGGT
Sbjct: 1 MGGVGDEEPATKRMKLSPGQLRGLSNGSSITEPVAGSSRDLMARPLTSEGDEEVVGSKGVIKRVEFVRLIAKALYSLGYKKSGAHLEEESGIPLHSSVVTLFMQQILDGNWDGSVDTLQKIGLSDENVTKSASFMILEQKFFELLDDEKDMDALKTLRTEIVPLCINGSRVRELSSCIVSPSFGGTPGKNIA----RAKSRPKLLEDLQKLLPPTVMILERRLEHLVEQALVLQRDACIFHNSLNEEMSLYTDHRCGRDQIPSRTLQILQAHSDEVWFLQFSHNGKYLASSSSDRLAIIWEVDVNGCVSLKHRLSGHQKPVSIVSWSPDDHQLLTCGVEEVVRRWDVSSGECLHVYEKPGLGLVSCGWFPDGKWIFSGVSDKSICMWELDGKELECWKGQRTLRISDLEITSDGKQIISTCRDNAILLLDREAKVEILIEEDQTITSFSLSRDNRFLLVNLLNQEIHLWSIEGEIKLVAKYKGHKRTRFVIRSCFGGLEQAFIASGSEDSQVYVWHRGSGELIEALPGHSGAVNCVSWNPTNTHMLASASDDRTIRIWGLKELKVKHRDAHSNGVHYCNGGT 578
BLAST of DCAR_030291 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5E4FP07 ((Full=PREDICTED: WD {ECO:0000313|EMBL:VVA29195.1}))
HSP 1 Score: 708.368 bits (1827), Expect = 0.000e+0
Identity = 354/581 (60.93%), Postives = 426/581 (73.32%), Query Frame = 0
Match: A0A5E4FP07 ((Full=PREDICTED: WD {ECO:0000313|EMBL:VVA29195.1}))
HSP 1 Score: 708.368 bits (1827), Expect = 0.000e+0
Identity = 354/581 (60.93%), Postives = 426/581 (73.32%), Query Frame = 0
Query: 1 MGGVEDDQPPLKRVKVAAKHLRGFTNGYSTKESTSSLSL-MMARPLSSQGDDEILGTKGIVKKVELVRIITEALYSLGYERTGAHLEEESGIHLQSSVVKLFMQHILDGNWDKSINTLHKFSQLDETTIKSASFIILEQKFLELLDDEKLMDALKTLRTEIAPLCINSNRIHNLSARIVSPFQRDQTEIVANTAMKAKSRSMLLEELQRIFPPTVIIPERRLVHLVEQALELQRDACIFHNSLVGDMSLYTDHQCGRDQIPSHTLQILQEHSDEVWFLQFSHNGKYLASASGDHIVIIWEVNSDGRFTLKNRLSGHQKSIFHVSWSPDDLQLLTCGVQETARRWDVSSGECLHVYEKNGVSIVSCEWAPGGKEIYFGFTDKSISMWDLEGKEVECWKGQRIVSISDLGVTSDGKKIITICKNSVILLFDKELNVEKFIEEDETITSFSLSSDNKFLLVSLVNKEIHLWKIEGHTKLVGKYKGHKRTRYVLKACFGGFEQSFIACGSEDAQV---------------------------------------------------KMKPKGCQSNGVHYINGGT 529
MGGV D++P KR+K++ LRG +NG S E + S +MARPL+S+GD+E++G+KG++K+VE VR+I +ALYSLGY+++GAHLEEESGI L SSVV LFMQ ILDGNWD S++TL K DE KSASF+ILEQKF ELLDDEK MDALKTLRTEI PLCIN +R+ LS+ IVSP ++AKSR LLE+LQ++ PPTV+I ERRL HLVEQAL LQRDACIFHNSL +MSLYTDH+CGRDQIPS TLQILQ HSDEVWFLQFSHNGKYLAS+S D + IIWEV+ +G +LK+RLSGHQK + VSWSPDD QLLTCGV+E RRWDVSSGECLHVYEK G+ +VSC W P GK I+ G +DKSI MW+L+GKE+ECWKGQR + ISDL +TSDGK+II+ C+++ ILL D+E VE IEED+TITSFSLS DN+FLLV+L+N+EIHLW IEG KLV KYKGHKRTR+V+++CFGG EQ+FIA GSED+QV K+K + SNGVHY NGGT
Sbjct: 1 MGGVGDEEPATKRMKLSPGQLRGLSNGSSITEPVAGSSRDLMARPLTSEGDEEVVGSKGVIKRVEFVRLIAKALYSLGYKKSGAHLEEESGIPLHSSVVTLFMQQILDGNWDGSVDTLQKIGLSDENITKSASFMILEQKFFELLDDEKDMDALKTLRTEIVPLCINGSRVRELSSCIVSP---SFGGTPGKNIVRAKSRPKLLEDLQKLLPPTVMILERRLEHLVEQALVLQRDACIFHNSLNEEMSLYTDHRCGRDQIPSRTLQILQAHSDEVWFLQFSHNGKYLASSSSDRLAIIWEVDVNGCVSLKHRLSGHQKPVSIVSWSPDDHQLLTCGVEEVVRRWDVSSGECLHVYEKPGLGLVSCGWFPDGKWIFSGVSDKSICMWELDGKELECWKGQRTLRISDLEITSDGKQIISTCRDNAILLLDREAKVEILIEEDQTITSFSLSRDNRFLLVNLLNQEIHLWSIEGEIKLVAKYKGHKRTRFVIRSCFGGLEQAFIASGSEDSQVYVWHRGSGELIEALPGHSGAVNCVSWNPTNTHMLASASDDRTIRIWGLKELKVKHRDAHSNGVHYCNGGT 578
BLAST of DCAR_030291 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6IIF2 ((Compass-like h3k4 histone methylase component wdr5b {ECO:0000313|EMBL:OIS97510.1}))
HSP 1 Score: 707.597 bits (1825), Expect = 0.000e+0
Identity = 340/520 (65.38%), Postives = 415/520 (79.81%), Query Frame = 0
Match: A0A1J6IIF2 ((Compass-like h3k4 histone methylase component wdr5b {ECO:0000313|EMBL:OIS97510.1}))
HSP 1 Score: 707.597 bits (1825), Expect = 0.000e+0
Identity = 340/520 (65.38%), Postives = 415/520 (79.81%), Query Frame = 0
Query: 1 MGGVEDDQPPLKRVKVAAKHLRGFTNGYSTKESTS-SLSLMMARPLSSQGDDEILGTKGIVKKVELVRIITEALYSLGYERTGAHLEEESGIHLQSSVVKLFMQHILDGNWDKSINTLHKFSQLDETTIKSASFIILEQKFLELLDDEKLMDALKTLRTEIAPLCINSNRIHNLSARIVSPFQRDQTEIVANTAMKAKSRSMLLEELQRIFPPTVIIPERRLVHLVEQALELQRDACIFHNSLVGDMSLYTDHQCGRDQIPSHTLQILQEHSDEVWFLQFSHNGKYLASASGDHIVIIWEVNSDGRFTLKNRLSGHQKSIFHVSWSPDDLQLLTCGVQETARRWDVSSGECLHVYEKNGVSIVSCEWAPGGKEIYFGFTDKSISMWDLEGKEVECWKGQRIVSISDLGVTSDGKKIITICKNSVILLFDKELNVEKFIEEDETITSFSLSSDNKFLLVSLVNKEIHLWKIEGHTKLVGKYKGHKRTRYVLKACFGGFEQSFIACGSEDAQVKMKPKGCQS 519
MGG +DD+PP KRVKV+ +NG K+ S SLS MARPL++QGDDEI+GTKG+VKKVE VRII +ALYSLGY++TGA LEEESGI L SS V LFMQ ILDG WD+S+ TL K +DE +K ASF+ILEQKF ELLD E++MDALKTLRTEIAPLC+NS+R+H LS I+SP + + +K KSR+ LLEELQR+ PPT +IPE+RL+HLVEQALELQ +AC+FHNSLV +MSL TDH CGRDQ+PS TLQILQEH DEVWFLQFSHNGKYLAS+S D VIIWEV DG+F LK+R GHQK + ++SW PDD LLTCGV+E RRWDV SG+C+ +Y KNGV +VSC WAP GK I+ GFTDKSISMWDLEGKE+ECWKG RI I+DLG+TSDGK ++++CK+++ILLF+ E E+ I+ED+TITSF LS+DN+++LVSL N+EIHLW IEG KLV KYKGHKR+R+V+++CFGG +QSFIA GSED+QV + K Q+
Sbjct: 1 MGGAKDDEPPSKRVKVSFGESADHSNGTFLKDPASCSLSESMARPLAAQGDDEIVGTKGVVKKVEFVRIIADALYSLGYKKTGAFLEEESGIPLHSSQVHLFMQQILDGRWDESVATLRKIGLVDEKIVKLASFVILEQKFFELLDREEVMDALKTLRTEIAPLCVNSDRVHELSLFIISPSGVSSGQDI----VKTKSRTKLLEELQRLLPPTAMIPEKRLIHLVEQALELQVEACLFHNSLVSEMSLLTDHHCGRDQLPSQTLQILQEHKDEVWFLQFSHNGKYLASSSADCSVIIWEVKLDGKFCLKHRFYGHQKPVSYMSWGPDDRHLLTCGVEEFVRRWDVDSGKCIRIYRKNGVGLVSCGWAPDGKRIFCGFTDKSISMWDLEGKELECWKGHRISRIADLGITSDGKHMVSVCKDNMILLFELESKAERIIQEDQTITSFELSADNRYVLVSLWNQEIHLWYIEGSVKLVAKYKGHKRSRFVVRSCFGGLDQSFIASGSEDSQVYIWHKCSQA 516
BLAST of DCAR_030291 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4A8H9 ((WD repeat-containing protein 26-like {ECO:0000313|RefSeq:XP_016472889.1}))
HSP 1 Score: 705.671 bits (1820), Expect = 0.000e+0
Identity = 340/520 (65.38%), Postives = 415/520 (79.81%), Query Frame = 0
Match: A0A1S4A8H9 ((WD repeat-containing protein 26-like {ECO:0000313|RefSeq:XP_016472889.1}))
HSP 1 Score: 705.671 bits (1820), Expect = 0.000e+0
Identity = 340/520 (65.38%), Postives = 415/520 (79.81%), Query Frame = 0
Query: 1 MGGVEDDQPPLKRVKVAAKHLRGFTNGYSTKESTS-SLSLMMARPLSSQGDDEILGTKGIVKKVELVRIITEALYSLGYERTGAHLEEESGIHLQSSVVKLFMQHILDGNWDKSINTLHKFSQLDETTIKSASFIILEQKFLELLDDEKLMDALKTLRTEIAPLCINSNRIHNLSARIVSPFQRDQTEIVANTAMKAKSRSMLLEELQRIFPPTVIIPERRLVHLVEQALELQRDACIFHNSLVGDMSLYTDHQCGRDQIPSHTLQILQEHSDEVWFLQFSHNGKYLASASGDHIVIIWEVNSDGRFTLKNRLSGHQKSIFHVSWSPDDLQLLTCGVQETARRWDVSSGECLHVYEKNGVSIVSCEWAPGGKEIYFGFTDKSISMWDLEGKEVECWKGQRIVSISDLGVTSDGKKIITICKNSVILLFDKELNVEKFIEEDETITSFSLSSDNKFLLVSLVNKEIHLWKIEGHTKLVGKYKGHKRTRYVLKACFGGFEQSFIACGSEDAQVKMKPKGCQS 519
MGG +DD+PP KRVKV+ +NG K+ S SLS MARPL+ QGDDEI+GTKG+VKKVE VRII +ALYSLGY++TGA LEEESGI L SS V LFM+ ILDG WD+S+ TL K +DE +K ASF+ILEQKF ELLD E++MDALKTLRTEIAPLC+NS+R+H LS I+SP + + +K KSR+ LLEELQR+ PPTV+IPE+RL+HLVEQALELQ +AC+FHNSLV +MSL TDH CGRDQ+PS TLQILQEH DEVWFLQFSHNGKYLAS+S D VIIWEV DG+F LK+R GHQK + ++SW PDD QLLTCGV+E RRWDV SG+C+ +Y KNGV +VSC W P GK I+ GFTDKSISMWDLEGKE+ECWKG RI I+DLG+TSDGK ++++CK+++ILLF+ E E+ I+ED+TITSF LS+DN+++LVSL N+EIHLW IEG KLV KYKGHKR+R+V+++CFGG +QSFIA GSED+QV + K Q+
Sbjct: 1 MGGAKDDEPPSKRVKVSFGESADHSNGTFLKDPASCSLSESMARPLAVQGDDEIVGTKGVVKKVEFVRIIADALYSLGYKKTGAFLEEESGIPLHSSQVHLFMEQILDGRWDESVATLRKIGLVDEKIVKLASFVILEQKFFELLDREEVMDALKTLRTEIAPLCVNSDRVHELSLFIISPSGVSSGQDI----VKMKSRTKLLEELQRLLPPTVMIPEKRLIHLVEQALELQVEACLFHNSLVSEMSLLTDHHCGRDQLPSQTLQILQEHKDEVWFLQFSHNGKYLASSSADCSVIIWEVKLDGKFCLKHRFYGHQKPVSYMSWGPDDRQLLTCGVEEFVRRWDVDSGKCIRIYRKNGVGLVSCGWDPDGKRIFCGFTDKSISMWDLEGKELECWKGHRISRIADLGITSDGKHMVSVCKDNMILLFELESKAERIIQEDQTITSFELSADNRYVLVSLWNQEIHLWYIEGSVKLVAKYKGHKRSRFVVRSCFGGLDQSFIASGSEDSQVYIWHKCSQA 516
BLAST of DCAR_030291 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7X208 ((WD repeat-containing protein 26-like {ECO:0000313|RefSeq:XP_009780908.1, ECO:0000313|RefSeq:XP_009780909.1}))
HSP 1 Score: 705.671 bits (1820), Expect = 0.000e+0
Identity = 340/520 (65.38%), Postives = 415/520 (79.81%), Query Frame = 0
Match: A0A1U7X208 ((WD repeat-containing protein 26-like {ECO:0000313|RefSeq:XP_009780908.1, ECO:0000313|RefSeq:XP_009780909.1}))
HSP 1 Score: 705.671 bits (1820), Expect = 0.000e+0
Identity = 340/520 (65.38%), Postives = 415/520 (79.81%), Query Frame = 0
Query: 1 MGGVEDDQPPLKRVKVAAKHLRGFTNGYSTKESTS-SLSLMMARPLSSQGDDEILGTKGIVKKVELVRIITEALYSLGYERTGAHLEEESGIHLQSSVVKLFMQHILDGNWDKSINTLHKFSQLDETTIKSASFIILEQKFLELLDDEKLMDALKTLRTEIAPLCINSNRIHNLSARIVSPFQRDQTEIVANTAMKAKSRSMLLEELQRIFPPTVIIPERRLVHLVEQALELQRDACIFHNSLVGDMSLYTDHQCGRDQIPSHTLQILQEHSDEVWFLQFSHNGKYLASASGDHIVIIWEVNSDGRFTLKNRLSGHQKSIFHVSWSPDDLQLLTCGVQETARRWDVSSGECLHVYEKNGVSIVSCEWAPGGKEIYFGFTDKSISMWDLEGKEVECWKGQRIVSISDLGVTSDGKKIITICKNSVILLFDKELNVEKFIEEDETITSFSLSSDNKFLLVSLVNKEIHLWKIEGHTKLVGKYKGHKRTRYVLKACFGGFEQSFIACGSEDAQVKMKPKGCQS 519
MGG +DD+PP KRVKV+ +NG K+ S SLS MARPL+ QGDDEI+GTKG+VKKVE VRII +ALYSLGY++TGA LEEESGI L SS V LFM+ ILDG WD+S+ TL K +DE +K ASF+ILEQKF ELLD E++MDALKTLRTEIAPLC+NS+R+H LS I+SP + + +K KSR+ LLEELQR+ PPTV+IPE+RL+HLVEQALELQ +AC+FHNSLV +MSL TDH CGRDQ+PS TLQILQEH DEVWFLQFSHNGKYLAS+S D VIIWEV DG+F LK+R GHQK + ++SW PDD QLLTCGV+E RRWDV SG+C+ +Y KNGV +VSC W P GK I+ GFTDKSISMWDLEGKE+ECWKG RI I+DLG+TSDGK ++++CK+++ILLF+ E E+ I+ED+TITSF LS+DN+++LVSL N+EIHLW IEG KLV KYKGHKR+R+V+++CFGG +QSFIA GSED+QV + K Q+
Sbjct: 1 MGGAKDDEPPSKRVKVSFGESADHSNGTFLKDPASCSLSESMARPLAVQGDDEIVGTKGVVKKVEFVRIIADALYSLGYKKTGAFLEEESGIPLHSSQVHLFMEQILDGRWDESVATLRKIGLVDEKIVKLASFVILEQKFFELLDREEVMDALKTLRTEIAPLCVNSDRVHELSLFIISPSGVSSGQDI----VKMKSRTKLLEELQRLLPPTVMIPEKRLIHLVEQALELQVEACLFHNSLVSEMSLLTDHHCGRDQLPSQTLQILQEHKDEVWFLQFSHNGKYLASSSADCSVIIWEVKLDGKFCLKHRFYGHQKPVSYMSWGPDDRQLLTCGVEEFVRRWDVDSGKCIRIYRKNGVGLVSCGWDPDGKRIFCGFTDKSISMWDLEGKELECWKGHRISRIADLGITSDGKHMVSVCKDNMILLFELESKAERIIQEDQTITSFELSADNRYVLVSLWNQEIHLWYIEGSVKLVAKYKGHKRSRFVVRSCFGGLDQSFIASGSEDSQVYIWHKCSQA 516
BLAST of DCAR_030291 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251Q1X1 ((Uncharacterized protein {ECO:0000313|EMBL:ONI17793.1}))
HSP 1 Score: 705.671 bits (1820), Expect = 0.000e+0
Identity = 355/582 (61.00%), Postives = 428/582 (73.54%), Query Frame = 0
Match: A0A251Q1X1 ((Uncharacterized protein {ECO:0000313|EMBL:ONI17793.1}))
HSP 1 Score: 705.671 bits (1820), Expect = 0.000e+0
Identity = 355/582 (61.00%), Postives = 428/582 (73.54%), Query Frame = 0
Query: 1 MGGVEDDQPPLKRVKVAAKHLRGFTNGYSTKESTSSLSL-MMARPLSSQGDDEILGTKGIVKKVELVRIITEALYSLGYERTGAHLEEESGIHLQSSVVKLFMQHILDGNWDKSINTLHKFSQLDETTIKSASFIILEQKFLELLDDEKLMDALKTLRTEIAPLCINSNRIHNLSARIVSP-FQRDQTEIVANTAMKAKSRSMLLEELQRIFPPTVIIPERRLVHLVEQALELQRDACIFHNSLVGDMSLYTDHQCGRDQIPSHTLQILQEHSDEVWFLQFSHNGKYLASASGDHIVIIWEVNSDGRFTLKNRLSGHQKSIFHVSWSPDDLQLLTCGVQETARRWDVSSGECLHVYEKNGVSIVSCEWAPGGKEIYFGFTDKSISMWDLEGKEVECWKGQRIVSISDLGVTSDGKKIITICKNSVILLFDKELNVEKFIEEDETITSFSLSSDNKFLLVSLVNKEIHLWKIEGHTKLVGKYKGHKRTRYVLKACFGGFEQSFIACGSEDAQV---------------------------------------------------KMKPKGCQSNGVHYINGGT 529
MGGV D++P KR+K++ LRG +NG S E + S +MARPL+S+GD+E++G+KG++K+VE VR+I +ALYSLGY+++ AHLEEESGI L SSVV LFMQ ILDGNWD S++TL K DE KSASF+ILEQKF ELLDDEK MDALKTLRTEI PLCIN +R+ LS+ IVSP F + +A +AKSR LLE+LQ++ PPTV+I ERRL HLVEQAL LQRDACIFHNSL +MSLYTDH+CGRDQIPS TLQILQ HSDEVWFLQFSHNGKYLAS+S D + IIWEV+ +G +LK+RLSGHQK + VSWSPDD QLLTCGV+E RRWDVSSGECLHVYEK G+ +VSC W P GK I+ G +DKSI MW+L+GKE+ECWKGQR + ISDL +TSDGK+II+ C+++ ILL D+E VE IEED+TITSFSLS DN+FLLV+L+N+EIHLW IEG KLV KYKGHKRTR+V+++CFGG EQ+FIA GSED+QV K+K + SNGVHY NGGT
Sbjct: 1 MGGVGDEEPATKRMKLSPGQLRGLSNGSSITEPVAGSSRDLMARPLTSEGDEEVVGSKGVIKRVEFVRLIAKALYSLGYKKSSAHLEEESGIPLHSSVVTLFMQQILDGNWDGSVDTLQKIGLSDENITKSASFMILEQKFFELLDDEKDMDALKTLRTEIVPLCINGSRVRELSSCIVSPSFGGTPGKNIA----RAKSRPKLLEDLQKLLPPTVMILERRLEHLVEQALVLQRDACIFHNSLNEEMSLYTDHRCGRDQIPSRTLQILQAHSDEVWFLQFSHNGKYLASSSSDRLAIIWEVDVNGCVSLKHRLSGHQKPVSIVSWSPDDHQLLTCGVEEVVRRWDVSSGECLHVYEKPGLGLVSCGWFPDGKWIFSGVSDKSICMWELDGKELECWKGQRTLRISDLEITSDGKQIISTCRDNAILLLDREAKVEILIEEDQTITSFSLSRDNRFLLVNLLNQEIHLWSIEGEIKLVAKYKGHKRTRFVIRSCFGGLEQAFIASGSEDSQVYVWHRGSGELIEALPGHSGAVNCVSWNPTNTHMLASASDDRTIRIWGLKELKVKHRDAHSNGVHYCNGGT 578
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7BKZ1 | E-Value: 0.000e+0, PID: 62.99 | (Putative Transducin family protein / WD-40 repeat... [more] |
| A0A6P6S9C4 | E-Value: 0.000e+0, PID: 59.55 | (WD repeat-containing protein 26 homolog {ECO:0000... [more] |
| A0A068VAJ6 | E-Value: 0.000e+0, PID: 59.01 | (Uncharacterized protein {ECO:0000313|EMBL:CDP1786... [more] |
| A0A6P5TCD0 | E-Value: 0.000e+0, PID: 61.34 | (WD repeat-containing protein 26-like {ECO:0000313... [more] |
| A0A6J5WSF7 | E-Value: 0.000e+0, PID: 61.17 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4304... [more] |
| A0A5E4FP07 | E-Value: 0.000e+0, PID: 60.93 | (Full=PREDICTED: WD {ECO:0000313|EMBL:VVA29195.1})[more] |
| A0A1J6IIF2 | E-Value: 0.000e+0, PID: 65.38 | (Compass-like h3k4 histone methylase component wdr... [more] |
| A0A1S4A8H9 | E-Value: 0.000e+0, PID: 65.38 | (WD repeat-containing protein 26-like {ECO:0000313... [more] |
| A0A1U7X208 | E-Value: 0.000e+0, PID: 65.38 | (WD repeat-containing protein 26-like {ECO:0000313... [more] |
| A0A251Q1X1 | E-Value: 0.000e+0, PID: 61.00 | (Uncharacterized protein {ECO:0000313|EMBL:ONI1779... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |