Resource Type:
Polypeptide
Name:
DCAR_030857
Identifier:
DCAR_030857.mRNA-protein
Sequence:
MLPPRQQSRSGGGLPTSFSLPLLDASGSFNLQERVSNTDQVRESPTESAS
SRETWPNANADALLAHKLEKERENGFTEHSVTLNVSNLDRMSLRDIVRER
VDSVAEKMQRLPDEFLEKLKNEVRSLLDGTGGSQHREEFLFLQKLILSRS
DLTEKTLRMAHRVHLEILVAIRTAIQAFLHPSVSLSQASLIEVFLYKRCR
NISCGSLLPAEDCTCDACSKRNGFCNLCMCLICNKFDFEVNTCRWIGCDL
CNHWTHTDCAIRNGHIGMGPSVKSGAGLPEMIFRCRACNRTSELFGWVKD
VFMSCAQSWDREALIRELDFVGRIFRGSEDSKGRKLFWKCEELIDKLKGG
LTEPVVTRAVMMFFQEFEVDPLKSSESEESGNLIAPQEAFNRIADVVQEA
VKKMEMVEEEKLRMVKKARLAVEACDQELKDKAREVVSLKMDHQRKKQQI
DDLESIVRLKQAEADMFDLKASEARQESERIQRIVLAKSEKSEEDYATRY
LKQRLNEAEAEKQYLFEKIKLQESSKAAQTQSSAGGSDTSQMLMYSKIQD
LLKNVYNVPSKEGQSSSHHSLGALQ*
Sequence Length:
576
Sequence Checksum:
e3ca69000b3f92810ccc5fd8c55b01d6
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_030857, derives from mRNA, DCAR_030857. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_030857 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_030857 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GU25 (OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218})
HSP 1 Score: 907.131 bits (2343), Expect = 0.000e+0
Identity = 443/576 (76.91%), Postives = 502/576 (87.15%), Query Frame = 0
Match: A0A7J7GU25 (OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218})
HSP 1 Score: 907.131 bits (2343), Expect = 0.000e+0
Identity = 443/576 (76.91%), Postives = 502/576 (87.15%), Query Frame = 0
Query: 1 MLPPRQQSRSGGGLPTSFSLPLLDASGSFNLQERVSNTDQVRESPTESASSRETWPNANADALLAHKLEKERENGFTEHSVTLNVSNLDRMSLRDIVRERVDSVAEKMQRLPDEFLEKLKNEVRSLLDGTGGSQHREEFLFLQKLILSRSDLTEKTLRMAHRVHLEILVAIRTAIQAFLHPSVSLSQASLIEVFLYKRCRNISCGSLLPAEDCTCDACSKRNGFCNLCMCLICNKFDFEVNTCRWIGCDLCNHWTHTDCAIRNGHIGMGPSVKSGAGLPEMIFRCRACNRTSELFGWVKDVFMSCAQSWDREALIRELDFVGRIFRGSEDSKGRKLFWKCEELIDKLKGGLTEPVVT-RAVMMFFQEFEVDPLKSSESEESGNLIAPQEAFNRIADVVQEAVKKMEMVEEEKLRMVKKARLAVEACDQELKDKAREVVSLKMDHQRKKQQIDDLESIVRLKQAEADMFDLKASEARQESERIQRIVLAKSEKSEEDYATRYLKQRLNEAEAEKQYLFEKIKLQESSKAAQTQSSAGGSDTSQMLMYSKIQDLLKNVYNVPSK-EGQSSSHHSLGAL 574
MLPPRQQ R GL TS SL DA GS NLQER SN+DQVRESP+ESASSRETWP A+A + EKE ENGF EHSV ++S+ D+MSLRD+ RERVD ++E+MQ LPDEFLEKLK E+R +L+GTGGS HR+EFL LQKL+ SRSDLT+KTL AHRV LEILVAI+T IQAFLHPSVSLSQASLIEVFLYKRCRNI+CGS LPAEDC C+ACS RNGFCNLCMC+ICNKFDFEVNTCRWIGCDLC+HWTHTDCAIRNG IG GP VK+G+ +M+F CRACNRTSEL GWVKDVF CA SWDREALIRELD+V RIFRGSED +GRKL WKC+ELIDKLKGG+ EP V + +++FFQE EVDP K+SESEE G LIAPQEAFNRIA+VVQEA+KKMEMV EEK+RMVKKARLAVEACDQELKDK REV +LKM+ QRKKQQID+LESIVRLKQAEADMFD+KASEAR+E+ER+QRI LAK+EKSEEDYA+RYLKQRLNEAEAEKQYLFEKIKLQESS+A +QSSAGG++TSQM+MY K+QD+LKN+YNVPSK EGQ + HH+LGA+
Sbjct: 17 MLPPRQQPR---GLQTSLSLVSPDACGSPNLQERGSNSDQVRESPSESASSRETWPTADALIAKKLEKEKEGENGFAEHSVIRHISSSDKMSLRDVARERVDIISERMQHLPDEFLEKLKTEIRVILEGTGGSLHRDEFLSLQKLVQSRSDLTDKTLIRAHRVQLEILVAIKTGIQAFLHPSVSLSQASLIEVFLYKRCRNIACGSPLPAEDCNCEACSMRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRNGLIGPGPGVKTGSVPADMLFGCRACNRTSELLGWVKDVFQQCAPSWDREALIRELDYVSRIFRGSEDPRGRKLVWKCDELIDKLKGGMAEPAVACKVILLFFQELEVDPSKNSESEEGGQLIAPQEAFNRIANVVQEAIKKMEMVAEEKMRMVKKARLAVEACDQELKDKGREVAALKMERQRKKQQIDELESIVRLKQAEADMFDVKASEARREAERLQRIALAKAEKSEEDYASRYLKQRLNEAEAEKQYLFEKIKLQESSRA--SQSSAGGNETSQMMMYCKMQDILKNIYNVPSKTEGQPNDHHNLGAI 587
BLAST of DCAR_030857 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9U8X9 (OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218})
HSP 1 Score: 906.746 bits (2342), Expect = 0.000e+0
Identity = 439/578 (75.95%), Postives = 507/578 (87.72%), Query Frame = 0
Match: A0A6I9U8X9 (OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218})
HSP 1 Score: 906.746 bits (2342), Expect = 0.000e+0
Identity = 439/578 (75.95%), Postives = 507/578 (87.72%), Query Frame = 0
Query: 1 MLPPRQQSR-SGGGLPTSFSLPLLDASGSFNLQERVSNTDQVRESPTESASSRETWPNANADALLAHKLEKE--RENGFTEHSVTLNVSNLDRMSLRDIVRERVDSVAEKMQRLPDEFLEKLKNEVRSLLDGTGGSQHREEFLFLQKLILSRSDLTEKTLRMAHRVHLEILVAIRTAIQAFLHPSVSLSQASLIEVFLYKRCRNISCGSLLPAEDCTCDACSKRNGFCNLCMCLICNKFDFEVNTCRWIGCDLCNHWTHTDCAIRNGHIGMGPSVKSGAGLPEMIFRCRACNRTSELFGWVKDVFMSCAQSWDREALIRELDFVGRIFRGSEDSKGRKLFWKCEELIDKLKGGLTEPVVTRAVMMFFQEFEVDPLKSSESEESGNLIAPQEAFNRIADVVQEAVKKMEMVEEEKLRMVKKARLAVEACDQELKDKAREVVSLKMDHQRKKQQIDDLESIVRLKQAEADMFDLKASEARQESERIQRIVLAKSEKSEEDYATRYLKQRLNEAEAEKQYLFEKIKLQESSKAAQTQSSAGGSDTSQMLMYSKIQDLLKNVYNVPSK-EGQSSSHHSLGAL 574
MLPPRQQ R GGGL TS SL DA GS NL ER SN+DQVRESP+ESASSRETWP A DAL+A KLEKE R+NGF EHSV ++S+ ++MSLRD+ RERV+ +AE+MQ LPDE+L+K KNE+R+ L+G GGSQ REEFLFLQKL+ SR DLTEKTL +AHRV LEILVAI+T IQAFLHPSVSLSQASLI++FLYKRCRNI+CGS LPA+DCTC+ CSKRNGFCNLCMC+ICNKFDFEVNTCRWIGCDLC+HWTHTDCAIRNG IGMGPSVK+G EM+FRCRAC+RTSEL GWVKDVF CA +WDR+ALIRELD+V RIFRGSED +GRKLFWKCEELI+KLK G+ EP+ +A++M FQE E DPLK+ ++EE+G +I+PQEAFNRIADVVQEAV+KMEMV EEK+RMVKKARLAVEAC+QELKDKAREV +LK++ QRKK QID+LESIVRLKQAEADMF+LKA+EAR+E+ER+QRI LAK+EKSEEDYA+RYLKQRL+EAEAEKQYLFEKIKLQESS+A +QSSAG SD SQM+ YSKIQDLLKN+YN PSK + QS+ HSLGAL
Sbjct: 15 MLPPRQQPRPGGGGLQTSLSLVSPDACGSPNLHERGSNSDQVRESPSESASSRETWPTA--DALVAKKLEKEKERDNGFAEHSVVRHISSSNKMSLRDVARERVEVIAERMQNLPDEYLDKFKNELRAFLEGLGGSQQREEFLFLQKLVQSRGDLTEKTLIIAHRVQLEILVAIKTGIQAFLHPSVSLSQASLIDIFLYKRCRNIACGSALPADDCTCELCSKRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRNGQIGMGPSVKNGISSAEMLFRCRACSRTSELLGWVKDVFQHCAPNWDRDALIRELDYVSRIFRGSEDPRGRKLFWKCEELIEKLKSGVAEPIPCKAILMLFQELEADPLKNQDTEEAGRMISPQEAFNRIADVVQEAVRKMEMVAEEKMRMVKKARLAVEACEQELKDKAREVAALKLERQRKKIQIDELESIVRLKQAEADMFELKANEARREAERLQRIALAKTEKSEEDYASRYLKQRLHEAEAEKQYLFEKIKLQESSRA--SQSSAGASDPSQMV-YSKIQDLLKNMYNTPSKADTQSTDLHSLGAL 587
BLAST of DCAR_030857 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BAZ7 (OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218})
HSP 1 Score: 904.049 bits (2335), Expect = 0.000e+0
Identity = 436/577 (75.56%), Postives = 505/577 (87.52%), Query Frame = 0
Match: A0A5B7BAZ7 (OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218})
HSP 1 Score: 904.049 bits (2335), Expect = 0.000e+0
Identity = 436/577 (75.56%), Postives = 505/577 (87.52%), Query Frame = 0
Query: 1 MLPPRQQSRSGGGLPTSFSLPLLDASGSFNLQERVSNTDQVRESPTESASSRETWPNANADALLAHKLEKERE--NGFTEHSVTLNVSNLDRMSLRDIVRERVDSVAEKMQRLPDEFLEKLKNEVRSLLDGTGGSQHREEFLFLQKLILSRSDLTEKTLRMAHRVHLEILVAIRTAIQAFLHPSVSLSQASLIEVFLYKRCRNISCGSLLPAEDCTCDACSKRNGFCNLCMCLICNKFDFEVNTCRWIGCDLCNHWTHTDCAIRNGHIGMGPSVKSGAGLPEMIFRCRACNRTSELFGWVKDVFMSCAQSWDREALIRELDFVGRIFRGSEDSKGRKLFWKCEELIDKLKGGLTEPVVTRAVMMFFQEFEVDPLKSSESEESGNLIAPQEAFNRIADVVQEAVKKMEMVEEEKLRMVKKARLAVEACDQELKDKAREVVSLKMDHQRKKQQIDDLESIVRLKQAEADMFDLKASEARQESERIQRIVLAKSEKSEEDYATRYLKQRLNEAEAEKQYLFEKIKLQESSKAAQTQSSAGGSDTSQMLMYSKIQDLLKNVYNVPSK-EGQSSSHHSLGAL 574
MLPPRQQ R GG L TS SL D+SGS NLQER SN+DQVRESP+ESASSRETWP A D L+ KLEKE+E NGFTEHSV ++S+ D+MSL+D+ RERVD ++E+M++LP EFLEKLKNE+R +L+GTGGSQHREEFLFLQ+L+ +R DLT+KTL AHRV LEILVAI+T IQAFLHPS+SL QASL+EVFLYKRCRNI+CG+ LPAEDCTC+ CS RNGFCNLCMC+ICNKFDFEVNTCRWIGCDLC+HWTHTDCAIRNG IGMGPSV + AG +M+F+CRAC+RTSEL GWVKDVF CA SWDREAL+RELD+V RIFRGSED +GRKLFWKCEEL +KLKGG+TE + +++FFQE EVDP K+ ESEE G LIAPQEA NRIADVVQEA++KMEMV EEK+RMVKKA LA+E CDQELKDKAR+V ++KM+ QRKKQQID+LESIVRLKQAEADMF+LKASEAR+E+ER+Q+I LAKSEKSEEDYA+RYLK RLNEAEAEKQYLFEKIKLQESS+A +QSSAGG+D+SQMLMYSKIQDLLKNVYNVPSK EG + HS+G++
Sbjct: 17 MLPPRQQPRPGG-LQTSLSLVSPDSSGSPNLQERGSNSDQVRESPSESASSRETWPAA--DVLMTRKLEKEKEGENGFTEHSVVHHISSSDKMSLQDVARERVDIISERMKQLPAEFLEKLKNELRVILEGTGGSQHREEFLFLQRLVQTRGDLTDKTLIRAHRVQLEILVAIKTGIQAFLHPSLSLPQASLLEVFLYKRCRNIACGTPLPAEDCTCEICSMRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRNGQIGMGPSVNTVAGPADMLFKCRACSRTSELLGWVKDVFQHCAPSWDREALVRELDYVSRIFRGSEDPRGRKLFWKCEELKEKLKGGVTEQTACKVILLFFQELEVDPSKNPESEEGGRLIAPQEACNRIADVVQEAIRKMEMVAEEKMRMVKKAHLALETCDQELKDKARDVAAIKMERQRKKQQIDELESIVRLKQAEADMFELKASEARREAERLQKIALAKSEKSEEDYASRYLKLRLNEAEAEKQYLFEKIKLQESSRA--SQSSAGGNDSSQMLMYSKIQDLLKNVYNVPSKAEGPPNDRHSIGSI 588
BLAST of DCAR_030857 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RB40 (OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218})
HSP 1 Score: 893.264 bits (2307), Expect = 0.000e+0
Identity = 433/575 (75.30%), Postives = 503/575 (87.48%), Query Frame = 0
Match: A0A2R6RB40 (OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218})
HSP 1 Score: 893.264 bits (2307), Expect = 0.000e+0
Identity = 433/575 (75.30%), Postives = 503/575 (87.48%), Query Frame = 0
Query: 1 MLPPRQQSRSGGGLPTSFSLPLLDASGSFNLQERVSNTDQVRESPTESASSRETWPNANADALLAHKLEKERENGFTEHSVTLNVSNLDRMSLRDIVRERVDSVAEKMQRLPDEFLEKLKNEVRSLLDGTGGSQHREEFLFLQKLILSRSDLTEKTLRMAHRVHLEILVAIRTAIQAFLHPSVSLSQASLIEVFLYKRCRNISCGSLLPAEDCTCDACSKRNGFCNLCMCLICNKFDFEVNTCRWIGCDLCNHWTHTDCAIRNGHIGMGPSVKSGAGLPEMIFRCRACNRTSELFGWVKDVFMSCAQSWDREALIRELDFVGRIFRGSEDSKGRKLFWKCEELIDKLKGGLTEPVVTRAVMMFFQEFEVDPLKSSESEESGNLIAPQEAFNRIADVVQEAVKKMEMVEEEKLRMVKKARLAVEACDQELKDKAREVVSLKMDHQRKKQQIDDLESIVRLKQAEADMFDLKASEARQESERIQRIVLAKSEKSEEDYATRYLKQRLNEAEAEKQYLFEKIKLQESSKAAQTQSSAGGSDTSQMLMYSKIQDLLKNVYNVPSK-EGQSSSHHSLGAL 574
MLPPRQQ RSGG + TS SL DA GS NLQER SN+DQ+RESP+ESASSRETWP +A + EKE ENGF EHSV ++S+ D+MSLRD+ RERVD ++E+MQ LPDEFLEKLK+E+R +L+GTGGS HREEFL LQKL+ SRSDLT+KTL AHR+ LEILVAI+T IQAFLHPSVSLSQASLIEVFL+KRCRNI+CGS LPAEDCTC++CS RNGFCNLCMC+ICNKFDFEVNTCRWIGCD C+HWTHTDCAIRNG IGMG VK+G+ +M+FRCRAC+RTSEL GWVKDVF C+ SWDREALIRELD+ RIFRGSED +GRKLFWKCEELIDKLKGG+ EP+ + +++FFQE EVDP K+SE+EESG LIAPQEAFN+IADVVQEA++KMEMV EEK+RMVKKARLAVEACD+ELKDKA+EV LKM+ QRKKQQID+LESIVRLKQAEA+MFD+KASEAR+E+ER+QRIVL+KSEKSEEDYA++YLK RL+EAEAEKQYLFEKIKLQESS++ QSS GG+DTSQMLMY K+QD+LKN+YNVPSK EGQ + H+LG+L
Sbjct: 17 MLPPRQQPRSGG-VQTSLSLVSPDACGSPNLQERGSNSDQIRESPSESASSRETWPTTDALMAKKLEKEKEGENGFAEHSVMRHISSSDKMSLRDVGRERVDIISEQMQHLPDEFLEKLKSELRVILEGTGGSLHREEFLLLQKLVQSRSDLTDKTLIRAHRIQLEILVAIKTGIQAFLHPSVSLSQASLIEVFLFKRCRNIACGSPLPAEDCTCESCSMRNGFCNLCMCVICNKFDFEVNTCRWIGCDFCSHWTHTDCAIRNGLIGMGAGVKTGSVPADMLFRCRACSRTSELLGWVKDVFQHCSPSWDREALIRELDYASRIFRGSEDPRGRKLFWKCEELIDKLKGGMAEPMACKVILLFFQELEVDPSKNSENEESGRLIAPQEAFNKIADVVQEAIRKMEMVAEEKMRMVKKARLAVEACDRELKDKAKEVAGLKMERQRKKQQIDELESIVRLKQAEAEMFDVKASEARREAERLQRIVLSKSEKSEEDYASKYLKLRLSEAEAEKQYLFEKIKLQESSRS--LQSSGGGNDTSQMLMYCKMQDMLKNIYNVPSKAEGQQNDLHNLGSL 588
BLAST of DCAR_030857 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0F172 (OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218})
HSP 1 Score: 892.878 bits (2306), Expect = 0.000e+0
Identity = 433/575 (75.30%), Postives = 503/575 (87.48%), Query Frame = 0
Match: A0A7J0F172 (OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218})
HSP 1 Score: 892.878 bits (2306), Expect = 0.000e+0
Identity = 433/575 (75.30%), Postives = 503/575 (87.48%), Query Frame = 0
Query: 1 MLPPRQQSRSGGGLPTSFSLPLLDASGSFNLQERVSNTDQVRESPTESASSRETWPNANADALLAHKLEKERENGFTEHSVTLNVSNLDRMSLRDIVRERVDSVAEKMQRLPDEFLEKLKNEVRSLLDGTGGSQHREEFLFLQKLILSRSDLTEKTLRMAHRVHLEILVAIRTAIQAFLHPSVSLSQASLIEVFLYKRCRNISCGSLLPAEDCTCDACSKRNGFCNLCMCLICNKFDFEVNTCRWIGCDLCNHWTHTDCAIRNGHIGMGPSVKSGAGLPEMIFRCRACNRTSELFGWVKDVFMSCAQSWDREALIRELDFVGRIFRGSEDSKGRKLFWKCEELIDKLKGGLTEPVVTRAVMMFFQEFEVDPLKSSESEESGNLIAPQEAFNRIADVVQEAVKKMEMVEEEKLRMVKKARLAVEACDQELKDKAREVVSLKMDHQRKKQQIDDLESIVRLKQAEADMFDLKASEARQESERIQRIVLAKSEKSEEDYATRYLKQRLNEAEAEKQYLFEKIKLQESSKAAQTQSSAGGSDTSQMLMYSKIQDLLKNVYNVPSK-EGQSSSHHSLGAL 574
MLPPRQQ RSGG + TS SL DA GS NLQER SN+DQ+RESP+ESASSRETWP +A + EKE ENGF EHSV ++S+ D+MSLRD+ RERVD ++E+MQ LPDEFLEKLK+E+R +L+GTGGS HREEFL LQKL+ SRSDLT+KTL AHR+ LEILVAI+T IQAFLHPSVSLSQASLIEVFL+KRCRNI+CGS LPAEDCTC++CS RNGFCNLCMC+ICNKFDFEVNTCRWIGCD C+HWTHTDCAIRNG IGMG VK+G+ +M+FRCRAC+RTSEL GWVKDVF C+ SWDREALIRELD+ RIFRGSED +GRKLFWKCEELIDKLKGG+ EP+ + +++FFQE EVDP K+SE++ESG LIAPQEAFNRIADVVQEA++KMEMV EEK+RMVKKARLAVEACD+ELKDKA+EV LKM+ QRKKQQID+LESIVRLKQAEA+MFD+KASEAR+E+ER+QRIVL+KSEKSEEDYA++YLK RL+EAEAEKQYLFEKIKLQESS++ QSS GG+DTSQMLMY K+QD+LKN+YNVPSK EGQ + H+LG+L
Sbjct: 17 MLPPRQQPRSGG-VQTSLSLVSPDACGSPNLQERGSNSDQIRESPSESASSRETWPTTDALMAKKLEKEKEGENGFAEHSVMRHISSSDKMSLRDVGRERVDIISEQMQHLPDEFLEKLKSELRVILEGTGGSLHREEFLLLQKLVQSRSDLTDKTLIRAHRIQLEILVAIKTGIQAFLHPSVSLSQASLIEVFLFKRCRNIACGSPLPAEDCTCESCSMRNGFCNLCMCVICNKFDFEVNTCRWIGCDFCSHWTHTDCAIRNGLIGMGAGVKTGSVPADMLFRCRACSRTSELLGWVKDVFQHCSPSWDREALIRELDYASRIFRGSEDPRGRKLFWKCEELIDKLKGGMAEPMACKVILLFFQELEVDPSKNSENDESGRLIAPQEAFNRIADVVQEAIRKMEMVAEEKMRMVKKARLAVEACDRELKDKAKEVAGLKMERQRKKQQIDELESIVRLKQAEAEMFDVKASEARREAERLQRIVLSKSEKSEEDYASKYLKLRLSEAEAEKQYLFEKIKLQESSRS--LQSSGGGNDTSQMLMYCKMQDMLKNIYNVPSKAEGQQNDLHNLGSL 588
BLAST of DCAR_030857 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B405 (OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218})
HSP 1 Score: 891.338 bits (2302), Expect = 0.000e+0
Identity = 433/574 (75.44%), Postives = 498/574 (86.76%), Query Frame = 0
Match: A0A5J5B405 (OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218})
HSP 1 Score: 891.338 bits (2302), Expect = 0.000e+0
Identity = 433/574 (75.44%), Postives = 498/574 (86.76%), Query Frame = 0
Query: 1 MLPPRQQSRSGGGLPTSFSLPLLDASGSFNLQERVSNTDQVRESPTESASSRETWPNANADALLAHKLEKERE--NGFTEHSVTLNVSNLDRMSLRDIVRERVDSVAEKMQRLPDEFLEKLKNEVRSLLDGTGGSQHREEFLFLQKLILSRSDLTEKTLRMAHRVHLEILVAIRTAIQAFLHPSVSLSQASLIEVFLYKRCRNISCGSLLPAEDCTCDACSKRNGFCNLCMCLICNKFDFEVNTCRWIGCDLCNHWTHTDCAIRNGHIGMGPSVKSGAGLPEMIFRCRACNRTSELFGWVKDVFMSCAQSWDREALIRELDFVGRIFRGSEDSKGRKLFWKCEELIDKLKGGLTEPVVTRAVMMFFQEFEVDPLKSSESEESGNLIAPQEAFNRIADVVQEAVKKMEMVEEEKLRMVKKARLAVEACDQELKDKAREVVSLKMDHQRKKQQIDDLESIVRLKQAEADMFDLKASEARQESERIQRIVLAKSEKSEEDYATRYLKQRLNEAEAEKQYLFEKIKLQESSKAAQTQSSAGGSDTSQMLMYSKIQDLLKNVYNVPSK-EGQSSSHHSL 571
MLPPRQQ R GG L TS SL D+SGS NLQER SN+DQVRESP+ESASSRETWP A D L+ KLEKE+E NGFTEHSV ++S+ D+MSLRD+ RERV+ ++++M LPDEFLEKLK+E+R +L+GTGGSQHREEF FLQ+L+ +R DLT+KTL AHRV LEILVAI+T IQAFLHP+VSL Q+SL+EVFLYKRCRNI+CGS LPAEDCTC+ CS RNGFCNLCMC+ICNKFDFEVNTCRWIGCDLC+HWTHTDCAIRNG IGMG SV + AG +M+F+CRACNRTSEL GWVKDVF CA SWDREALIRELD+V RIFRGSED KGRKLFWKCEEL++KLKGG+ EP +A+++FFQE EVDP K+SESEE G LIAPQEA NRIADVVQEAV+KME V EEK+RMVKKA LA++ACDQELKDKAREV +LK++ Q KKQQID+LE IVRLKQAEADMF+LKASEAR+E+ER+QRI LAKSEKSEEDYA+RYLK RLNEAEAEKQYLFEKIKLQESS+A +QSS GG+D+SQM+MY+KIQDLLKNVYNVPSK EG + S+
Sbjct: 17 MLPPRQQPRPGG-LQTSLSLVSPDSSGSPNLQERGSNSDQVRESPSESASSRETWPTA--DVLMTRKLEKEKEGENGFTEHSVVHHISSSDKMSLRDVARERVEIISKRMNHLPDEFLEKLKSELRVILEGTGGSQHREEFQFLQRLVQTRGDLTDKTLIRAHRVQLEILVAIKTGIQAFLHPNVSLPQSSLLEVFLYKRCRNIACGSPLPAEDCTCEICSMRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRNGQIGMGASVNTIAGPADMLFKCRACNRTSELLGWVKDVFQHCAPSWDREALIRELDYVSRIFRGSEDPKGRKLFWKCEELVEKLKGGVAEPTACKAILLFFQELEVDPSKNSESEEGGRLIAPQEACNRIADVVQEAVRKMETVAEEKMRMVKKAHLALDACDQELKDKAREVAALKIERQGKKQQIDELERIVRLKQAEADMFELKASEARREAERLQRIALAKSEKSEEDYASRYLKLRLNEAEAEKQYLFEKIKLQESSRA--SQSSGGGNDSSQMMMYNKIQDLLKNVYNVPSKSEGPPNDRSSI 585
BLAST of DCAR_030857 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EMW0 (OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218})
HSP 1 Score: 889.412 bits (2297), Expect = 0.000e+0
Identity = 443/606 (73.10%), Postives = 502/606 (82.84%), Query Frame = 0
Match: A0A4S4EMW0 (OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218})
HSP 1 Score: 889.412 bits (2297), Expect = 0.000e+0
Identity = 443/606 (73.10%), Postives = 502/606 (82.84%), Query Frame = 0
Query: 1 MLPPRQQSRSGGGLPTSFSLPLLDASGSFNLQERVSNTDQVRESPTESASSRETWPNANADALLAHKLEKERENGFTEHSVTLNVSNLDRMSLRDIVRERVDSVAEKMQRLPDEFLEKLKNEVRSLLDGT------------------------------GGSQHREEFLFLQKLILSRSDLTEKTLRMAHRVHLEILVAIRTAIQAFLHPSVSLSQASLIEVFLYKRCRNISCGSLLPAEDCTCDACSKRNGFCNLCMCLICNKFDFEVNTCRWIGCDLCNHWTHTDCAIRNGHIGMGPSVKSGAGLPEMIFRCRACNRTSELFGWVKDVFMSCAQSWDREALIRELDFVGRIFRGSEDSKGRKLFWKCEELIDKLKGGLTEPVVT-RAVMMFFQEFEVDPLKSSESEESGNLIAPQEAFNRIADVVQEAVKKMEMVEEEKLRMVKKARLAVEACDQELKDKAREVVSLKMDHQRKKQQIDDLESIVRLKQAEADMFDLKASEARQESERIQRIVLAKSEKSEEDYATRYLKQRLNEAEAEKQYLFEKIKLQESSKAAQTQSSAGGSDTSQMLMYSKIQDLLKNVYNVPSK-EGQSSSHHSLGAL 574
MLPPRQQ R GL TS SL DA GS NLQER SN+DQVRESP+ESASSRETWP A+A + EKE ENGF EHSV ++S+ D+MSLRD+VRERVD ++E+MQ LPDEFLEKLK E+R +L+GT GGS HR+EFL LQKL+ SRSDLT+KTL AHRV LEILVAI+T IQAFLHPSVSLSQASLIEVFLYKRCRNI+CGS LPAEDC C+ACS RNGFCNLCMC+ICNKFDFEVNTCRWIGCD C+HWTHTDCAIRNG IG GP VK+G+ +M+F CRACNRTSEL GWVKDVF CA SWDREALIRELD+V RIFRGSED +GRKL WKC+ELIDKLKGG+ EP V + +++FFQE EVDP K+SESEE G LIAPQEAFNRIA+VVQEA+KKMEMV EEK+RMVKKARLAVEACDQELKDK REV +LKM+ QRKKQQID+LESIVRLKQAEADMFD+KASEAR+E+ER+QRI LAK+EKSEEDYA+RYLKQRLNEAEAEKQYLFEKIKLQESS+A +QSSAGG++TSQM+MY K+QD+LKN+YNVPSK EGQ + HH+LGA+
Sbjct: 17 MLPPRQQPR---GLQTSLSLVSPDACGSPNLQERGSNSDQVRESPSESASSRETWPTADALIAKKLEKEKEGENGFAEHSVIRHISSSDKMSLRDVVRERVDIISERMQDLPDEFLEKLKTEIRVILEGTVADLGHTRGHSQAKTQEKLKTEIRVILEGTGGSLHRDEFLSLQKLVQSRSDLTDKTLIRAHRVQLEILVAIKTGIQAFLHPSVSLSQASLIEVFLYKRCRNIACGSPLPAEDCNCEACSMRNGFCNLCMCVICNKFDFEVNTCRWIGCDSCSHWTHTDCAIRNGLIGPGPGVKTGSVPADMLFGCRACNRTSELLGWVKDVFQQCAPSWDREALIRELDYVSRIFRGSEDPRGRKLVWKCDELIDKLKGGMAEPAVACKVILLFFQELEVDPSKNSESEEGGQLIAPQEAFNRIANVVQEAIKKMEMVAEEKMRMVKKARLAVEACDQELKDKGREVAALKMERQRKKQQIDELESIVRLKQAEADMFDVKASEARREAERLQRIALAKAEKSEEDYASRYLKQRLNEAEAEKQYLFEKIKLQESSRA--SQSSAGGNETSQMMMYCKMQDILKNIYNVPSKTEGQPNDHHNLGAI 617
BLAST of DCAR_030857 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9G3L1 (OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218})
HSP 1 Score: 888.256 bits (2294), Expect = 0.000e+0
Identity = 434/578 (75.09%), Postives = 498/578 (86.16%), Query Frame = 0
Match: A0A2G9G3L1 (OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218})
HSP 1 Score: 888.256 bits (2294), Expect = 0.000e+0
Identity = 434/578 (75.09%), Postives = 498/578 (86.16%), Query Frame = 0
Query: 1 MLPPRQQSR-SGGGLPTSFSLPLLDASGSFNLQERVSNTDQVRESPTESASSRETWPNANADALLAHKLEKE--RENGFTEHSVTLNVSNLDRMSLRDIVRERVDSVAEKMQRLPDEFLEKLKNEVRSLLDGTGGSQHREEFLFLQKLILSRSDLTEKTLRMAHRVHLEILVAIRTAIQAFLHPSVSLSQASLIEVFLYKRCRNISCGSLLPAEDCTCDACSKRNGFCNLCMCLICNKFDFEVNTCRWIGCDLCNHWTHTDCAIRNGHIGMGPSVKSGAGLPEMIFRCRACNRTSELFGWVKDVFMSCAQSWDREALIRELDFVGRIFRGSEDSKGRKLFWKCEELIDKLKGGLTEPVVTRAVMMFFQEFEVDPLKSSESEESGNLIAPQEAFNRIADVVQEAVKKMEMVEEEKLRMVKKARLAVEACDQELKDKAREVVSLKMDHQRKKQQIDDLESIVRLKQAEADMFDLKASEARQESERIQRIVLAKSEKSEEDYATRYLKQRLNEAEAEKQYLFEKIKLQESSKAAQTQSSAGGSDTSQMLMYSKIQDLLKNVYNVPSK-EGQSSSHHSLGAL 574
MLPPRQQ R GGGL TS SL DA GS NLQER SN+DQVRESP+ESASSRETWP A DAL++ KLEKE R+NGF EHSV ++S+ D+MSLRD+ ERV+ +AE+MQ LPDE+L+K KNE+RS L+G G SQ REEF+ LQ+L+ +R DLTEKTL MAHRV LEILVAI+T IQAFLHPSVSLSQASLI++FLYKRCRNI+CGS LPAEDC C+ CSKRNGFCNLCMC+ICNKFDFEVNTCRWIGCD+C+HWTHTDCAIRNG IGMGPSVKSG+ EM+FRCRAC+RTSEL GWVKDVF CA SWDR+ALIRELDFV RIFRGSED +GRKLFWKCEELIDKLK G+ EP+ + ++MFFQE E D LK+ ESEE+G +I+PQEAFNRIADVVQEAV+KME+V EEK+RMVKKARLAVEAC+QELKDKAREV +LKM+ QRKK QID+LESIVRLKQAEADMF+LKA+EAR+E+ER+QRI LAK+EKSEEDYA+RYLKQRL+EAEAEKQYLFEKIKLQES + QSSAG SD M++KIQDLLKN+YN PSK +GQSS HSLG +
Sbjct: 15 MLPPRQQPRPGGGGLQTSLSLVSPDACGSPNLQERGSNSDQVRESPSESASSRETWPTA--DALVSKKLEKEKERDNGFAEHSVVRHISSSDKMSLRDVAGERVEIIAERMQNLPDEYLDKFKNELRSFLEGLGSSQQREEFIILQRLVQNRGDLTEKTLIMAHRVQLEILVAIKTGIQAFLHPSVSLSQASLIDIFLYKRCRNIACGSALPAEDCICELCSKRNGFCNLCMCVICNKFDFEVNTCRWIGCDMCSHWTHTDCAIRNGQIGMGPSVKSGSNSAEMVFRCRACSRTSELVGWVKDVFQHCAPSWDRDALIRELDFVRRIFRGSEDPRGRKLFWKCEELIDKLKSGVGEPMACKIILMFFQELEADSLKNQESEEAGRMISPQEAFNRIADVVQEAVRKMEVVAEEKMRMVKKARLAVEACEQELKDKAREVAALKMERQRKKIQIDELESIVRLKQAEADMFELKANEARREAERLQRIALAKTEKSEEDYASRYLKQRLHEAEAEKQYLFEKIKLQESLRP--MQSSAGTSDP----MFNKIQDLLKNMYNTPSKADGQSSDLHSLGPI 584
BLAST of DCAR_030857 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0FX58 (OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218})
HSP 1 Score: 886.715 bits (2290), Expect = 0.000e+0
Identity = 430/575 (74.78%), Postives = 499/575 (86.78%), Query Frame = 0
Match: A0A7J0FX58 (OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218})
HSP 1 Score: 886.715 bits (2290), Expect = 0.000e+0
Identity = 430/575 (74.78%), Postives = 499/575 (86.78%), Query Frame = 0
Query: 1 MLPPRQQSRSGGGLPTSFSLPLLDASGSFNLQERVSNTDQVRESPTESASSRETWPNANADALLAHKLEKERENGFTEHSVTLNVSNLDRMSLRDIVRERVDSVAEKMQRLPDEFLEKLKNEVRSLLDGTGGSQHREEFLFLQKLILSRSDLTEKTLRMAHRVHLEILVAIRTAIQAFLHPSVSLSQASLIEVFLYKRCRNISCGSLLPAEDCTCDACSKRNGFCNLCMCLICNKFDFEVNTCRWIGCDLCNHWTHTDCAIRNGHIGMGPSVKSGAGLPEMIFRCRACNRTSELFGWVKDVFMSCAQSWDREALIRELDFVGRIFRGSEDSKGRKLFWKCEELIDKLKGGLTEPVVTRAVMMFFQEFEVDPLKSSESEESGNLIAPQEAFNRIADVVQEAVKKMEMVEEEKLRMVKKARLAVEACDQELKDKAREVVSLKMDHQRKKQQIDDLESIVRLKQAEADMFDLKASEARQESERIQRIVLAKSEKSEEDYATRYLKQRLNEAEAEKQYLFEKIKLQESSKAAQTQSSAGGSDTSQMLMYSKIQDLLKNVYNVPSK-EGQSSSHHSLGAL 574
MLPPRQQ R GG + TS SL DA GS NLQER SN+DQ+RESP+ESASSRETWP A+A + EKE ENGF EHSV ++S+ D+MSLRD+ RERVD ++E+MQ LPDEFLEKLK+E+R +L+GTGGS HREEFL LQKL+ SRSDLT+KTL AHR+ LEILVAI+T IQAFLHPSVSLSQASLIEVFL+KRCRNI+CGS LPAEDCTC++CS RNGFCNLCMC+ICNKFDFEVNTCRWIGCD C+HWTHTDCAIRNG IGMG VK+G+ +M+FRCRAC+RTSEL GWVKDVF C+ SWDREALIRELD+ RIFRGSED +GRKLFWKCEELIDKLKGG+ EP+ + +++FFQE EVDP K+SESEESG LIAPQEAFNRIADVVQEA++KMEMV EEK+RMVKKAR AVEACD+ELKDKA EV LKM+ QRKKQQID+LESIVRLKQAEA+MFD+KASEAR+E+ER+QRIV +KSEKSEEDYA++YLK RL+EAEAEKQYLFEKIKLQESS+A +QSS GG+D SQMLMY K+QD+LK++Y+VPSK EGQ + H LG++
Sbjct: 17 MLPPRQQPRPGG-VQTSLSLVSPDACGSPNLQERGSNSDQIRESPSESASSRETWPTADALMAKKLEKEKEGENGFAEHSVIRHISSSDKMSLRDVARERVDIISERMQHLPDEFLEKLKSELRVILEGTGGSLHREEFLLLQKLVQSRSDLTDKTLIRAHRIQLEILVAIKTGIQAFLHPSVSLSQASLIEVFLFKRCRNIACGSPLPAEDCTCESCSMRNGFCNLCMCVICNKFDFEVNTCRWIGCDFCSHWTHTDCAIRNGLIGMGAGVKTGSVPADMLFRCRACSRTSELLGWVKDVFQHCSPSWDREALIRELDYASRIFRGSEDPRGRKLFWKCEELIDKLKGGMAEPMACKVILLFFQELEVDPSKNSESEESGRLIAPQEAFNRIADVVQEAIRKMEMVAEEKMRMVKKARQAVEACDRELKDKAMEVAGLKMERQRKKQQIDELESIVRLKQAEAEMFDVKASEARREAERLQRIVFSKSEKSEEDYASKYLKLRLSEAEAEKQYLFEKIKLQESSRA--SQSSGGGNDASQMLMYCKMQDMLKSIYDVPSKAEGQQNDLHKLGSI 588
BLAST of DCAR_030857 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QLZ7 (OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218})
HSP 1 Score: 886.33 bits (2289), Expect = 0.000e+0
Identity = 430/575 (74.78%), Postives = 499/575 (86.78%), Query Frame = 0
Match: A0A2R6QLZ7 (OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218})
HSP 1 Score: 886.33 bits (2289), Expect = 0.000e+0
Identity = 430/575 (74.78%), Postives = 499/575 (86.78%), Query Frame = 0
Query: 1 MLPPRQQSRSGGGLPTSFSLPLLDASGSFNLQERVSNTDQVRESPTESASSRETWPNANADALLAHKLEKERENGFTEHSVTLNVSNLDRMSLRDIVRERVDSVAEKMQRLPDEFLEKLKNEVRSLLDGTGGSQHREEFLFLQKLILSRSDLTEKTLRMAHRVHLEILVAIRTAIQAFLHPSVSLSQASLIEVFLYKRCRNISCGSLLPAEDCTCDACSKRNGFCNLCMCLICNKFDFEVNTCRWIGCDLCNHWTHTDCAIRNGHIGMGPSVKSGAGLPEMIFRCRACNRTSELFGWVKDVFMSCAQSWDREALIRELDFVGRIFRGSEDSKGRKLFWKCEELIDKLKGGLTEPVVTRAVMMFFQEFEVDPLKSSESEESGNLIAPQEAFNRIADVVQEAVKKMEMVEEEKLRMVKKARLAVEACDQELKDKAREVVSLKMDHQRKKQQIDDLESIVRLKQAEADMFDLKASEARQESERIQRIVLAKSEKSEEDYATRYLKQRLNEAEAEKQYLFEKIKLQESSKAAQTQSSAGGSDTSQMLMYSKIQDLLKNVYNVPSK-EGQSSSHHSLGAL 574
MLPPRQQ R GG + TS SL DA GS NLQER SN+DQ+RESP+ESASSRETWP +A + EKE ENGF EHSV ++S+ D+MSLRD+ RERVD ++E+MQ LPDEFLEKLK+E+R +L+GTGGS HREEFL LQKL+ SRSDLT+KTL AHR+ LEILVAI+T IQAFLHPSVSLSQASLIEVFL+KRCRNI+CGS LPAEDCTC++CS RNGFCNLCMC+ICNKFDFEVNTCRWIGCD C+HWTHTDCAIRNG IGMG VK+G+ +M+FRCRAC+RTSEL GWVKDVF C+ SWDREALIRELD+ RIFRGSED +GRKLFWKCEELIDKLKGG+ EP+ + +++FFQE EVDP K+SESEESG LIAPQEAFNRIADVVQEA++KMEMV EEK+RMVKKAR AVEACD+ELKDKA EV LKM+ QRKKQQID+LESIVRLKQAEA+MFD+KASEAR+E+ER+QRIV +KSEKSEEDYA++YLK RL+EAEAEKQYLFEKIKLQESS+A +QSS GG+D SQMLMY K+QD+LKN+Y+VPSK EGQ + H+LG++
Sbjct: 17 MLPPRQQPRPGG-VQTSLSLVSPDACGSPNLQERGSNSDQIRESPSESASSRETWPTTDALMAKKLEKEKEGENGFAEHSVIRHISSSDKMSLRDVARERVDIISERMQHLPDEFLEKLKSELRVILEGTGGSLHREEFLLLQKLVQSRSDLTDKTLIRAHRIELEILVAIKTGIQAFLHPSVSLSQASLIEVFLFKRCRNIACGSPLPAEDCTCESCSMRNGFCNLCMCVICNKFDFEVNTCRWIGCDFCSHWTHTDCAIRNGLIGMGTGVKTGSVPADMLFRCRACSRTSELLGWVKDVFQHCSPSWDREALIRELDYASRIFRGSEDPRGRKLFWKCEELIDKLKGGMAEPMACKVILLFFQELEVDPSKNSESEESGRLIAPQEAFNRIADVVQEAIRKMEMVAEEKMRMVKKARQAVEACDRELKDKAMEVAGLKMERQRKKQQIDELESIVRLKQAEAEMFDVKASEARREAERLQRIVFSKSEKSEEDYASKYLKLRLSEAEAEKQYLFEKIKLQESSRA--SQSSGGGNDASQMLMYCKMQDMLKNIYDVPSKAEGQQNDLHNLGSI 588
| Match Name | Stats | Description |
|---|---|---|
| A0A7J7GU25 | E-Value: 0.000e+0, PID: 76.91 | OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218... [more] |
| A0A6I9U8X9 | E-Value: 0.000e+0, PID: 75.95 | OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218... [more] |
| A0A5B7BAZ7 | E-Value: 0.000e+0, PID: 75.56 | OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218... [more] |
| A0A2R6RB40 | E-Value: 0.000e+0, PID: 75.30 | OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218... [more] |
| A0A7J0F172 | E-Value: 0.000e+0, PID: 75.30 | OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218... [more] |
| A0A5J5B405 | E-Value: 0.000e+0, PID: 75.44 | OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218... [more] |
| A0A4S4EMW0 | E-Value: 0.000e+0, PID: 73.10 | OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218... [more] |
| A0A2G9G3L1 | E-Value: 0.000e+0, PID: 75.09 | OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218... [more] |
| A0A7J0FX58 | E-Value: 0.000e+0, PID: 74.78 | OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218... [more] |
| A0A2R6QLZ7 | E-Value: 0.000e+0, PID: 74.78 | OBERON-like protein {ECO:0000256|PIRNR:PIRNR025218... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |