Resource Type:
Polypeptide
Name:
DCAR_031102
Identifier:
DCAR_031102.mRNA-protein
Sequence:
MAQLAPGILLKLIDGMNMGTKPTSEHRSSLLQVTDIVPADLDEKDLWPKQ
GFYIKVSDSSHSIYVSLPFEQDDLVLSDKMQLGQFIYVDRLEPGSPVPVA
KGAKPLPGRHPLMGTPEPLMGLRKKGEKVEKRVNTVSSVPRRSSWGTGQR
KEDGNSGNSVVSSPFCLKPVPLDFDQCTPVKGQNSVKFAGNFPMSPMIKG
RVMRDGSCSGVRASVGAGVLSKMVDAKGEKESPMLRRSCFTPSSLKFPRS
KSVCDREQRIPKSPFNSAALGSCSEILANRSKFSRRKIEKKSLTPPPSLR
SSRTVAAENVAANAQQQSNVKLVSETQSQCVDSEPVDSSSSINLPGKLST
LGKEAVQQRETAQKIALQALRDASATENLVRSLRNLSKLTKSAKVDSPAN
CFDQFLEFHNQIVQAVSEMVSLQAASEMTSYNPNGEQTKKAARHSEQDSP
VSNHNQDSDTTASSKRRTALYKSIASFPERMDQRTILGKHMRSDKKGVAL
STNENDENKKPTACSSSLSNTIKLGKQIETEAGNWFMEFLDKTMDNKGVK
KSKGKVEADARKIPQSLLLKVINWVEVEQSDSTNGPVHPRAAQIARKLRI
KMKNP*
Sequence Length:
606
Sequence Checksum:
ef0cfd4421562acd8bbcbaef35895054
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_031102, derives from mRNA, DCAR_031102. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_031102 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_031102 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AVV0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8533141.1}))
HSP 1 Score: 772.696 bits (1994), Expect = 0.000e+0
Identity = 409/630 (64.92%), Postives = 474/630 (75.24%), Query Frame = 0
Match: A0A5J5AVV0 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8533141.1}))
HSP 1 Score: 772.696 bits (1994), Expect = 0.000e+0
Identity = 409/630 (64.92%), Postives = 474/630 (75.24%), Query Frame = 0
Query: 1 MAQLAPGILLKLIDGMNMGTKPTSEHRSSLLQVTDIVPADLDEKDLWPKQGFYIKVSDSSHSIYVSLPFEQDDLVLSDKMQLGQFIYVDRLEPGSPVPVAKGAKPLPGRHPLMGTPEPLMGLRKKGEKVEKRVNTVSSVPRRSSWGTGQRKEDGNSGNSVVSSPFCLKPVPLDFDQCTPVKGQ-NSVKFAGNFPMSPMIKGRVMRDGSCSGV-RASVGAGVLSKMVDAKGEKESP-MLRRSCFTPSSLKFPRSKSVCDREQRIPKSPFNSAALGSCSEILANRSKFSRRKIEKKSLTPPPSLRSSRTVAAENVAANAQQQSNVKLVSETQSQCVDSEPVDSSSSI--NLPGKLSTLGKEAVQQRETAQKIALQALRDASATENLVRSLRNLSKLTKSAKVDSPANCFDQFLEFHNQIVQAVSEMVSLQAASEMT--SYNPNGEQTKKAARHSEQDSPVSNHNQDSDTTASSKRRTALYKSIASFPERMDQRTILGKHMR---------SDKKG---------VALSTNENDENKKPTACSSSLSNTIKLGKQIETEAGNWFMEFLDKTMDNKGVKKSKGKVEADARKIPQSLLLKVINWVEVEQSDSTNGPVHPRAAQIARKLRIKMKNP 605
MA LAPGILL L+DGMN G KPTS+HRSSLLQVTDIVPADLDEK+L PK GFYIKVSDSSHSIYVSLPFEQDDLVLS+KMQLGQFIYVDRLEPGSPVPVAKG K +PGRHPL+GTPEP+MGLR+KGEK E++ ++ S RR SW TGQ +G VSSP LKPVPLDFDQCTP K + NS++ GN PMSPMI+GR +DGS SGV R+S+G +LSKM+D+KG ESP +LR+SC TPS LKFPRSKSVCDRE RIP+SPFNS EKKS TPPPSLR++R A+ N+ SN ++VSE +SQ DS ++++S+ NLPGKLS LG +AVQQRETAQKIALQALRDASATENLVRSLR S L+KS++ D+PA CFDQFLEFH QIVQAVSEMVS+QAA+ T + P E+ +S N N DS+ SSKRR+ALYKSIA+FPER DQ+TILGKH+R SD+KG + +T ENDENKKP S SL NTIKLGKQIETEAGNWFM+FL+K ++ G+KKSKG EA+ARK+PQSL+LKV NWVEVEQ DS+ PVHPRAAQIARKLRIKMKNP
Sbjct: 1 MATLAPGILLNLLDGMNSGVKPTSQHRSSLLQVTDIVPADLDEKNLLPKHGFYIKVSDSSHSIYVSLPFEQDDLVLSNKMQLGQFIYVDRLEPGSPVPVAKGTKTIPGRHPLVGTPEPIMGLREKGEKSEQKASSKLSAHRRGSWETGQ------NGTGAVSSPLVLKPVPLDFDQCTPRKERSNSMRIGGNLPMSPMIRGRTGKDGSSSGVIRSSMGGALLSKMMDSKG--ESPGLLRKSCVTPSILKFPRSKSVCDREPRIPRSPFNST--------------------EKKSSTPPPSLRNARVAASLNMGGEGMNSSNSRMVSEPESQPCDSAASNNTTSLPMNLPGKLSMLGMQAVQQRETAQKIALQALRDASATENLVRSLRMFSNLSKSSRADAPATCFDQFLEFHKQIVQAVSEMVSIQAATAATEMAQTPQPEEDAPILHEIMHNSMDQNRNPDSN---SSKRRSALYKSIAAFPERSDQKTILGKHVRSSNLNQKVSSDRKGGGSTPLGKLLFEATTENDENKKPPPSSCSLGNTIKLGKQIETEAGNWFMDFLEKALET-GLKKSKGTAEANARKVPQSLILKVTNWVEVEQCDSSKRPVHPRAAQIARKLRIKMKNP 598
BLAST of DCAR_031102 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GX57 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5945353.1}))
HSP 1 Score: 765.763 bits (1976), Expect = 0.000e+0
Identity = 412/634 (64.98%), Postives = 479/634 (75.55%), Query Frame = 0
Match: A0A7J7GX57 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5945353.1}))
HSP 1 Score: 765.763 bits (1976), Expect = 0.000e+0
Identity = 412/634 (64.98%), Postives = 479/634 (75.55%), Query Frame = 0
Query: 1 MAQLAPGILLKLIDGMNMGTKPTSEHRSSLLQVTDIVPADLDEKDLWPKQGFYIKVSDSSHSIYVSLPFEQDDLVLSDKMQLGQFIYVDRLEPGSPVPVAKGAKPLPGRHPLMGTPEPLMGLRKKGEKVEKRVNT-VSSVPRRSSWGTGQRKEDGNSGN-SVVSSPFCLKPVPLDFDQCTPVKGQNSVKFAGNFP-MSPMIKGRVMRDGSCSGVRASVGAGVLSKMVDAKGEKESP-MLRRSCFTPSSLKFPRSKSVCDREQRIPKSPFNSAALGSCSEILANRSKFSRRKIEKKSLTPPPSLRSSRTVAAENVAANAQQQSNVKLVSETQSQCVDSEPV---DSSSSINLPGKLSTLGKEAVQQRETAQKIALQALRDASATENLVRSLRNLSKLTKSAKVDSPANCFDQFLEFHNQIVQAVSEMVSLQAASEMTSYNPNGEQTKKAARHSEQDSPVS--------------------NHNQD--SDTTASSKRRTALYKSIASFPERMDQRTILGKHMRSDKKGVALSTNENDENKKPTACSSSLSNTIKLGKQIETEAGNWFMEFLDKTMDNKGVKKSKGKVEADARKIPQSLLLKVINWVEVEQSDSTNGPVHPRAAQIARKLRIKMKNP 605
MA LAPG+LLKL++GMN G KPTSEHRSSL+QVTDIVPADLDEK+LWPK GFY+KVSDSSHSIYVSLPFEQDDLVLS+KMQLGQFIYVDRLEPGSPVPV KGAKPLPGRHPL+GTPEPLMGLR+KGEK E++ N+ +SS RR SWGTG G SG S VS+P LK PLDF+QCTPVK + + NF MSPMI+GR +DGS SGVRASVG G+LSKMVD+KGEK+SP ++R+SC TPS KFPRSKSVC+RE RIP+SPFN+A EKKS TPPPSLR++R + N+ +AQ SN ++ S+++S S P ++S ++NLPGKLS LGKEAVQQRETAQKIALQALRDASATE LVRSL+ S LTKSAK +SPA CFDQFLEFHNQIV AV+EMVS+QAA+ + + QT +H E NH Q S++ ASSKRR ALYKSIA+FPER DQ+T+LGKH+RS K V T+ENDENKKP + S SLS+TI+LGKQIETE GNWFM+FL+K +D G+KKSKG VEADARK+PQSL+LKVINWVEVEQ DS+ PVHPRA QIARKLRIKMKNP
Sbjct: 1 MATLAPGVLLKLLNGMNTGVKPTSEHRSSLVQVTDIVPADLDEKNLWPKHGFYVKVSDSSHSIYVSLPFEQDDLVLSNKMQLGQFIYVDRLEPGSPVPVVKGAKPLPGRHPLVGTPEPLMGLREKGEKSEQKGNSRLSSATRRGSWGTG----TGQSGTESSVSTPLPLKSGPLDFEQCTPVKERP--RIGSNFAMMSPMIRGRSGKDGSSSGVRASVGGGLLSKMVDSKGEKDSPALVRKSCVTPSMSKFPRSKSVCEREPRIPRSPFNTA--------------------EKKSSTPPPSLRNARVAISLNMGGDAQNSSNSRVTSQSESSQSASLPSNDNNTSLALNLPGKLSILGKEAVQQRETAQKIALQALRDASATETLVRSLKMFSNLTKSAKANSPAACFDQFLEFHNQIVHAVAEMVSIQAATATSEIS----QTPITRKHKETACKKPEEKEEEEEPSILHELIHNSMNHQQPRYSESNASSKRRNALYKSIAAFPERSDQKTVLGKHLRSSKLLVEAVTSENDENKKPGSSSCSLSSTIRLGKQIETEVGNWFMDFLEKALDT-GLKKSKGTVEADARKVPQSLILKVINWVEVEQCDSSKRPVHPRAVQIARKLRIKMKNP 603
BLAST of DCAR_031102 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6V8Z0 ((uncharacterized protein LOC113718698 {ECO:0000313|RefSeq:XP_027099393.1}))
HSP 1 Score: 756.518 bits (1952), Expect = 0.000e+0
Identity = 404/623 (64.85%), Postives = 476/623 (76.40%), Query Frame = 0
Match: A0A6P6V8Z0 ((uncharacterized protein LOC113718698 {ECO:0000313|RefSeq:XP_027099393.1}))
HSP 1 Score: 756.518 bits (1952), Expect = 0.000e+0
Identity = 404/623 (64.85%), Postives = 476/623 (76.40%), Query Frame = 0
Query: 1 MAQLAPGILLKLIDGMNMGTKPTSEHRSSLLQVTDIVPADLDEKDLWPKQGFYIKVSDSSHSIYVSLPFEQDDLVLSDKMQLGQFIYVDRLEPGSPVPVAKGAKPLPGRHPLMGTPEPLMGLRKKGEKVEKRVNTVSSVPRRSSWGTGQRKEDGNSGNSVVSSPFCLKPVPLDFDQCTPVKGQ-NSVKFAGNFPMSPMIKGRVMRDGSC-SGVRASVGAGVLSKMVDAKGEKESPMLRRSCFTPSSLKFPRSKSVCDREQRIPKSPFNSAALGSCSEILANRSKFSRRKIEKKSLTPPPSLRSSRTVAAENVAANAQQQSNVKLVSETQSQCVDSEPVDSSSSINLPGKLSTLGKEAVQQRETAQKIALQALRDASATENLVRSLRNLSKLTKSAKVDSPANCFDQFLEFHNQIVQAVSEMVSLQAASEMTSYNPNGEQTKKAARHSEQDSPVSN---HNQD----SDTTASSKRRTALYKSIASFPERMDQRTILGKHMRSDKKGVALS-----TNENDENKKPT----ACSSSLSNTIKLGKQIETEAGNWFMEFLDKTMDNKGVKKSKGKVEADARKIPQSLLLKVINWVEVEQSDSTNGPVHPRAAQIARKLRIKMKNP 605
MA LAPGILLKL++GMN G KPT+EHRSSLLQVTDIVPADLDEK+LWPK GF+IKVSDSSHSIYVSLPF+QDDLVLS+KMQLGQFIYVD+LEPGSPVP+ KGAK +PGRHPL+GTPEPLMGLR+KGEK+E+++N S PRR SWGTG N ++ SSP LKPVPLDFDQCTPVK + NSVK GNFPMSP+I+GR +DG+ S VR+SVG +LSKM+D+KGE S ++R+SCFTPS LKFPRSKSVCDREQRIPKSPFNSA EKKS TPPP+LR++R A +V +AQ K+ QSQ DS +S +NLPGKLS LGKEA+QQRE AQKIALQALRDASATENLVR L+ S L KSA+ D+P+ CFDQFLEFHNQI QA++EM S+QAASE+ P E + SE+ +P+ + HN D S++TA SKRR ALYKSIA FPER DQ++ILGKH+RS +S ++ENDEN+KP + SSSLSNTIKLG+QIETEAGNWFM+FL+K ++ KG+KKSK + E DA K+PQSL+LKVINWVEVEQSD + PVHPRAA IARKLRIKMKNP
Sbjct: 1 MATLAPGILLKLLNGMNSGVKPTNEHRSSLLQVTDIVPADLDEKNLWPKHGFFIKVSDSSHSIYVSLPFDQDDLVLSNKMQLGQFIYVDKLEPGSPVPIVKGAKLVPGRHPLVGTPEPLMGLREKGEKIEQKINPKFSAPRRGSWGTGP-----NGTDAAASSPLVLKPVPLDFDQCTPVKDKPNSVKSGGNFPMSPVIRGRA-KDGTANSAVRSSVGGALLSKMMDSKGETPS-LVRKSCFTPSMLKFPRSKSVCDREQRIPKSPFNSA--------------------EKKSSTPPPNLRNARQAAFPHVGGDAQ-----KISVPAQSQSHDSASNSTSLPMNLPGKLSMLGKEAMQQREAAQKIALQALRDASATENLVRYLKMFSNLNKSARPDAPSRCFDQFLEFHNQIAQAIAEMASIQAASEVAQA-PTVESKENGENCSEEKTPILHEIMHNVDQSRNSESTA-SKRRAALYKSIAVFPERSDQKSILGKHLRSSILSQKVSAERKCSSENDENRKPVAAAASGSSSLSNTIKLGRQIETEAGNWFMDFLEKALE-KGLKKSKAEKEMDASKVPQSLILKVINWVEVEQSDPSKRPVHPRAAHIARKLRIKMKNP 588
BLAST of DCAR_031102 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834G7Q8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7124584.1}))
HSP 1 Score: 748.429 bits (1931), Expect = 0.000e+0
Identity = 400/622 (64.31%), Postives = 482/622 (77.49%), Query Frame = 0
Match: A0A834G7Q8 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7124584.1}))
HSP 1 Score: 748.429 bits (1931), Expect = 0.000e+0
Identity = 400/622 (64.31%), Postives = 482/622 (77.49%), Query Frame = 0
Query: 1 MAQLAPGILLKLIDGMNMGTKPTSEHRSSLLQVTDIVPADLDEKDLWPKQGFYIKVSDSSHSIYVSLPFEQDDLVLSDKMQLGQFIYVDRLEPGSPVPVAKGAKPLPGRHPLMGTPEPLMGLRKKGEKVEKRVNTVSSVPRRSSWGTGQRKEDGNSGNSVVSSPFCLKPVPLDFDQC-TPVKGQ-NSVKFAGNFPMSPMIKGRVMRDGSCSG----VRASVGAGVLSKMVDAKGEKESP-MLRRSCFTPSSLKFPRSKSVCDREQRIPKSPFNSAALGSCSEILANRSKFSRRKIEKKSLTPPPSLRSSRTVAAENV-AANAQQQSN--VKLVSETQSQCVDSEPVDSSSSINLPGKLSTLGKEAVQQRETAQKIALQALRDASATENLVRSLRNLSKLTKSAKVDSPANCFDQFLEFHNQIVQAVSEMVSLQA--ASEMTSYNPNGEQTKKAARHSEQDSPVSN---HNQDSDTTASSKRRTALYKSIASFPERMDQRTILGKHMRSDKKGVA--LSTNENDENKKPTACSSSLSNTIKLGKQIETEAGNWFMEFLDKTMDNKGVKKSKGKVEADARKIPQSLLLKVINWVEVEQSDSTNGPVHPRAAQIARKLRIKMKNP 605
MA LAPG+LLKL++GMN G KPT+EHRSSLLQVTDIVPADLDEKDLWPK GFY+KVSDSSHSIYVSLPFEQDDLVLS+KMQLGQFIYVD+LEPGSPVPV KGAKPLPGRHPL+GTPEPLMGLR++GE+ E+++ + +S PRR SWGTGQ G + SSP LKPVPLDFDQC TP+K + NS +F G FP SPMI+GR ++DGS +G +R+S G G+L+KMV++KG+ SP ++R+SC TPS KFPRSKSVCDRE RIP+SP+N+A EKKS+TPPPSLR++R A+ + A +AQ +N V +VS+ +SQ S + S ++NLPGKLS LGKEA+QQRETAQK+ALQALRDASATENLVRSL+ S L+K+AK ++PA CFDQFL+FH QIVQAV+EMVS+QA A+EM + PN +Q E+DS + N HN D ASSKRR LYKSIA FPER DQ+TILGKH+RS VA ++ENDENKKP C SL NTIKLG+QIETEAGNWFMEFL+K ++ G+KK+KG+VE +A+K+PQSL+LKVINWVEVEQ DS+ VHPRAAQ+ARKLRIKMKNP
Sbjct: 1 MATLAPGVLLKLLNGMNSGVKPTTEHRSSLLQVTDIVPADLDEKDLWPKHGFYVKVSDSSHSIYVSLPFEQDDLVLSNKMQLGQFIYVDKLEPGSPVPVVKGAKPLPGRHPLVGTPEPLMGLRERGERSEQKLISYNSAPRRGSWGTGQV---GTGDSVSNSSPSSLKPVPLDFDQCSTPIKERTNSGRFGGIFPGSPMIRGRAVKDGSSTGGGSVIRSSFGGGLLAKMVESKGDSTSPALVRKSCVTPSVSKFPRSKSVCDREPRIPRSPYNTA--------------------EKKSVTPPPSLRNARAAASLKMGAGDAQNSANSRVVVVSQPESQ---SGSDNKSLAMNLPGKLSMLGKEAMQQRETAQKVALQALRDASATENLVRSLKMFSNLSKTAKSEAPAACFDQFLDFHTQIVQAVAEMVSIQAATATEM-AQTPNTKQ-------PEEDSSILNELPHN-SLDPKASSKRRNVLYKSIAVFPERSDQKTILGKHVRSSCLKVAPIPPSSENDENKKPATC-CSLGNTIKLGRQIETEAGNWFMEFLEKALET-GLKKTKGRVEGEAQKVPQSLILKVINWVEVEQCDSSKRSVHPRAAQVARKLRIKMKNP 585
BLAST of DCAR_031102 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6V1B9 ((uncharacterized protein LOC113716388 {ECO:0000313|RefSeq:XP_027096495.1}))
HSP 1 Score: 746.888 bits (1927), Expect = 0.000e+0
Identity = 403/623 (64.69%), Postives = 476/623 (76.40%), Query Frame = 0
Match: A0A6P6V1B9 ((uncharacterized protein LOC113716388 {ECO:0000313|RefSeq:XP_027096495.1}))
HSP 1 Score: 746.888 bits (1927), Expect = 0.000e+0
Identity = 403/623 (64.69%), Postives = 476/623 (76.40%), Query Frame = 0
Query: 1 MAQLAPGILLKLIDGMNMGTKPTSEHRSSLLQVTDIVPADLDEKDLWPKQGFYIKVSDSSHSIYVSLPFEQDDLVLSDKMQLGQFIYVDRLEPGSPVPVAKGAKPLPGRHPLMGTPEPLMGLRKKGEKVEKRVNTVSSVPRRSSWGTGQRKEDGNSGNSVVSSPFCLKPVPLDFDQCTPVKGQ-NSVKFAGNFPMSPMIKGRVMRDGSCSGVRASVGAGVLSKMVDAKGEKESPMLRRSCFTPSSLKFPRSKSVCDREQRIPKSPFNSAALGSCSEILANRSKFSRRKIEKKSLTPPPSLRSSRTVAAENVAANAQQQSNVKLVSETQSQCVDSEPVDSSSSINLPGKLSTLGKEAVQQRETAQKIALQALRDASATENLVRSLRNLSKLTKSAKVDSPANCFDQFLEFHNQIVQAVSEMVSLQAASEMTSYNPNGEQTKKAARHSEQDSPVSN---HN-----QDSDTTASSKRRTALYKSIASFPERMDQRTILGKHMRSD--KKGVALS---TNENDENKKPT----ACSSSLSNTIKLGKQIETEAGNWFMEFLDKTMDNKGVKKSKGKVEADARKIPQSLLLKVINWVEVEQSDSTNGPVHPRAAQIARKLRIKMKNP 605
MA LAPGILLKL++GMN G KPT+EHRSSLLQVTDIVPADLDEK+LWPK GF+IKVSDSSHSIYVSLPF+QDDLVLS+KMQLGQFIYVD+LEPGSPVP+ KGAK +PGRHPL+GTPEPLMGLR+KGEK+E+++N S PRR SWGTG N ++ SSP LKPVPLDFDQCTPVK + NSVK GNFPMSP+I+GR + S VR+SVG +LSKM+D+KGE S ++R+SCFTPS LKFPRSKSVCDREQRIPKSPFNSA EKKS TPPP+LR++R A +V +AQ K+ QSQ DS +S +NLPGKLS LGKEA QQRE AQKIALQALRDASATENLVR L+ S L KSA+ D+P+ CFDQFLEFHNQI QA++EMVS+QAASE+ P E + SE+ +P+ + HN ++S++TA SKRR ALYKSIA FPER DQ++ILGKH+RS + V+L ++ENDEN+KP + SSSLSNTIKLG+QIETEAGNWFM+FL+K ++ KG+KKSK + E DA K+PQSL+LKVINWVEVEQSD + PVHPRAA IARKLRIKMKNP
Sbjct: 1 MATLAPGILLKLLNGMNSGVKPTNEHRSSLLQVTDIVPADLDEKNLWPKHGFFIKVSDSSHSIYVSLPFDQDDLVLSNKMQLGQFIYVDKLEPGSPVPIVKGAKLVPGRHPLVGTPEPLMGLREKGEKIEQKINPKLSAPRRGSWGTGP-----NGTDAAASSPLVLKPVPLDFDQCTPVKDKPNSVKSGGNFPMSPVIRGRAKDGTANSAVRSSVGGALLSKMMDSKGETPS-LVRKSCFTPSMLKFPRSKSVCDREQRIPKSPFNSA--------------------EKKSSTPPPNLRNARQAAFPHVGGDAQ-----KISVPAQSQSHDSSSNSTSLPMNLPGKLSMLGKEATQQREAAQKIALQALRDASATENLVRYLKMFSNLNKSARPDAPSRCFDQFLEFHNQIAQAIAEMVSIQAASEVAQA-PTVESKENGENCSEEKTPILHEIMHNNVDQSRNSESTA-SKRRAALYKSIAVFPERSDQKSILGKHLRSSILSQKVSLERKCSSENDENRKPVAAAASGSSSLSNTIKLGRQIETEAGNWFMDFLEKALE-KGLKKSKAEKEMDASKVPQSLILKVINWVEVEQSDPSKRPVHPRAAHIARKLRIKMKNP 589
BLAST of DCAR_031102 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RF31 ((Uncharacterized protein {ECO:0000313|EMBL:PSS28629.1}))
HSP 1 Score: 744.191 bits (1920), Expect = 0.000e+0
Identity = 389/622 (62.54%), Postives = 467/622 (75.08%), Query Frame = 0
Match: A0A2R6RF31 ((Uncharacterized protein {ECO:0000313|EMBL:PSS28629.1}))
HSP 1 Score: 744.191 bits (1920), Expect = 0.000e+0
Identity = 389/622 (62.54%), Postives = 467/622 (75.08%), Query Frame = 0
Query: 1 MAQLAPGILLKLIDGMNMGTKPTSEHRSSLLQVTDIVPADLDEKDLWPKQGFYIKVSDSSHSIYVSLPFEQDDLVLSDKMQLGQFIYVDRLEPGSPVPVAKGAKPLPGRHPLMGTPEPLMGLRKKGEKVEKRVNTVSSVPRRSSWGTGQRKEDGNSGNSVVSSPFCLKPVPLDFDQCTPVKGQ-NSVKFAGNFPMSPMIKGRVMRDGSCSGVRASVGAGVLSKMVDAKGEKESPMLRRSCFTPSSLKFPRSKSVCDREQRIPKSPFNSAALGSCSEILANRSKFSRRKIEKKSLTPPPSLRSSRTVAAENVAANAQQQSNVKLVSETQSQCVDSEPVDSSSSINLPGKLSTLGKEAVQQRETAQKIALQALRDASATENLVRSLRNLSKLTKSAKVDSPANCFDQFLEFHNQIVQAVSEMVSLQAASEMTSYNPNGEQTKKAARHSEQDSPVSNHNQDS-DTTASSKRRTALYKSIASFPERMDQRTILGKHMRS------DKKG-------VALSTN--ENDENKKPTACSSSLSNTIKLGKQIETEAGNWFMEFLDKTMDNKGVKKSKGKVEADARKIPQSLLLKVINWVEVEQSDSTNGPVHPRAAQIARKLRIKMKNP 605
MA LAPG+LLKL++GMN G KPT EHRSSLLQVTDIVPADLDEK+LWPK GFY+KVSDSSHSIYVSLPFEQDDLV S+KMQLGQFIYVD+LEPGSPVPV KGAKPLPGRHPL+GTPEPLMGLR++GE+ +++ + S RR SWGTGQ G VSSP LKP PLDFDQCTPVK + NS K GNFPMSPMI+GRV +DG +R+S+G G+L+KM D KG+ + ++R+SC TPS KFPRSKSVC+RE RIP+SPFN+A EKKS TPPP+LR++R A+ N+ NAQ SN + S+ +S +S + S ++NLPGKL+ LGKEA+QQRETAQKIALQALRDASATENLVR+ NLS K A+VD+PA CFDQFL+FHNQIVQAV+EMVS+QAA+ T QT E+ S + +S D + +SKRR ALYKSIA+FPER +Q+T+LG H+RS ++KG ++L TN EN+ENKKP +C SL NTIKLGKQIETEAGNWFM+FL+K ++ G+ K+KG VE +ARK+PQSL+LKVINWVEVEQ DS+ PVHPRAA IARKLRIKMKNP
Sbjct: 1 MATLAPGVLLKLLNGMNSGVKPTGEHRSSLLQVTDIVPADLDEKNLWPKLGFYVKVSDSSHSIYVSLPFEQDDLVFSNKMQLGQFIYVDKLEPGSPVPVVKGAKPLPGRHPLVGTPEPLMGLRERGERSDQKAISKVSAHRRGSWGTGQ------IGTDSVSSPLALKPTPLDFDQCTPVKERANSGKIGGNFPMSPMIRGRVAKDGV---IRSSIGGGLLAKMADLKGDSPA-LVRKSCVTPSMSKFPRSKSVCEREPRIPRSPFNTA--------------------EKKSSTPPPNLRNARVAASLNMGGNAQNYSNSNVSSQFES---ESGSDNKSLAMNLPGKLNMLGKEAMQQRETAQKIALQALRDASATENLVRTFSNLS---KKARVDAPAACFDQFLDFHNQIVQAVAEMVSIQAATTATEM----AQTPNTKEPEEEPSILHELAHNSMDQSKASKRRNALYKSIAAFPERSEQKTVLGNHLRSSSVKPFEQKGASTPLGKLSLETNSSENNENKKPASC--SLGNTIKLGKQIETEAGNWFMDFLEKALET-GLNKTKGTVEGEARKVPQSLILKVINWVEVEQCDSSKRPVHPRAAPIARKLRIKMKNP 579
BLAST of DCAR_031102 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TXV3 ((Uncharacterized protein {ECO:0000313|EMBL:CDP00168.1}))
HSP 1 Score: 742.651 bits (1916), Expect = 0.000e+0
Identity = 400/623 (64.21%), Postives = 474/623 (76.08%), Query Frame = 0
Match: A0A068TXV3 ((Uncharacterized protein {ECO:0000313|EMBL:CDP00168.1}))
HSP 1 Score: 742.651 bits (1916), Expect = 0.000e+0
Identity = 400/623 (64.21%), Postives = 474/623 (76.08%), Query Frame = 0
Query: 1 MAQLAPGILLKLIDGMNMGTKPTSEHRSSLLQVTDIVPADLDEKDLWPKQGFYIKVSDSSHSIYVSLPFEQDDLVLSDKMQLGQFIYVDRLEPGSPVPVAKGAKPLPGRHPLMGTPEPLMGLRKKGEKVEKRVNTVSSVPRRSSWGTGQRKEDGNSGNSVVSSPFCLKPVPLDFDQCTPVKGQ-NSVKFAGNFPMSPMIKGRVMRDGSCSGVRASVGAGVLSKMVDAKGEKESPMLRRSCFTPSSLKFPRSKSVCDREQRIPKSPFNSAALGSCSEILANRSKFSRRKIEKKSLTPPPSLRSSRTVAAENVAANAQQQSNVKLVSETQSQCVDSEPVDSSSSINLPGKLSTLGKEAVQQRETAQKIALQALRDASATENLVRSLRNLSKLTKSAKVDSPANCFDQFLEFHNQIVQAVSEMVSLQAASEMTSYNPNGEQTKKAARHSEQDSPVSN---HN-----QDSDTTASSKRRTALYKSIASFPERMDQRTILGKHMRSD--KKGVALS---TNENDENKKPT----ACSSSLSNTIKLGKQIETEAGNWFMEFLDKTMDNKGVKKSKGKVEADARKIPQSLLLKVINWVEVEQSDSTNGPVHPRAAQIARKLRIKMKNP 605
MA LAPGILLKL++GMN G KPT+EHRSSLLQVTDIVPADLDEK+LWPK GF+IKVSDSSHSIYVSLPF+QDDLVLS+KMQLGQFIYVD+LEPGSPVP+ KGAK +PGRHPL+GTPEPLMGLR+KGEK+E+++N S PRR SWGTG N ++ SSP LKPVPLDFDQCTPVK + NSVK GNFPMSP+I+GR + S VR+SVG +LSKM+D+KGE S ++R+SCFTPS LKFPRSKSVCDRE RIPKSPFNSA EKKS TPPP+LR++R A + +AQ K+ QSQ DS +S +NLPGKLS LGKEA QQRE AQKIALQALRDASATENLVR L+ S L KSA+ D+P+ CFDQFLEFHNQI QA++EMVS+QAASE+ P E + SE+ +P+ + HN ++S+++A SKRR ALYKSIA FPER DQ++ILGKH+RS + V+L ++ENDEN+KP + SSSLSNTIKLG+QIETEAGNWFM+FL+K ++ KG+KKSK + E DA K+PQSL+LKVINWVEVEQSD + PVHPRAA IARKLRIKMKNP
Sbjct: 1 MATLAPGILLKLLNGMNSGVKPTNEHRSSLLQVTDIVPADLDEKNLWPKHGFFIKVSDSSHSIYVSLPFDQDDLVLSNKMQLGQFIYVDKLEPGSPVPIVKGAKLVPGRHPLVGTPEPLMGLREKGEKIEQKINPKLSAPRRGSWGTGP-----NGTDAAASSPLVLKPVPLDFDQCTPVKDKPNSVKSGGNFPMSPVIRGRAKDGTANSAVRSSVGGALLSKMMDSKGETPS-LVRKSCFTPSMLKFPRSKSVCDREHRIPKSPFNSA--------------------EKKSSTPPPNLRNARQAAFPHFGGDAQ-----KITVPAQSQSHDSSSNSTSLPMNLPGKLSMLGKEATQQREAAQKIALQALRDASATENLVRYLKMFSNLNKSARPDAPSRCFDQFLEFHNQIAQAIAEMVSIQAASEVAQA-PTVESKENGENCSEEKTPILHEIMHNNVDQSRNSESSA-SKRRAALYKSIAVFPERSDQKSILGKHLRSSILSQKVSLERKCSSENDENRKPVAAAASGSSSLSNTIKLGRQIETEAGNWFMDFLEKALE-KGLKKSKAEKEMDASKVPQSLILKVINWVEVEQSDPSKRPVHPRAAHIARKLRIKMKNP 589
BLAST of DCAR_031102 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TSJ2 ((uncharacterized protein LOC105168255 {ECO:0000313|RefSeq:XP_011086563.1}))
HSP 1 Score: 739.954 bits (1909), Expect = 0.000e+0
Identity = 408/628 (64.97%), Postives = 471/628 (75.00%), Query Frame = 0
Match: A0A6I9TSJ2 ((uncharacterized protein LOC105168255 {ECO:0000313|RefSeq:XP_011086563.1}))
HSP 1 Score: 739.954 bits (1909), Expect = 0.000e+0
Identity = 408/628 (64.97%), Postives = 471/628 (75.00%), Query Frame = 0
Query: 1 MAQLAPGILLKLIDGMNMGTKPTSEHRSSLLQVTDIVPADLDEKDLWPKQGFYIKVSDSSHSIYVSLPFEQDDLVLSDKMQLGQFIYVDRLEPGSPVPVAKGAKPLPGRHPLMGTPEPLMGLRKKGEKVEKRVNTVSSVPRRSSWGTGQRKEDGNSGNSVVSSPFCLKPVPLDFDQCTPVKGQ--NSVKFAGNFPMSPMIKGRVMRDGSCSGVRASVGAGVLSKMVDAKGEKESPMLRRSC-FTPSSLKFPRSKSVCDREQRIPKSPFNSAALGSCSEILANRSKFSRRKIEKKSLTPPPSLRSSRTVAAENVAANAQQQSNVKLVSETQSQCVDSEPVDSSSSINLPGKLSTLGKEAVQQRETAQKIALQALRDASATENLVRSLRNLSKLTKSAKVDSPANCFDQFLEFHNQIVQAVSEMVSLQAASEM--TSYNPNGEQTKKAARHSEQDS-------PVSNHNQDSDTTASSKRRTALYKSIASFPERMDQRTILGKHMR---------SDKKGVALS--TNENDENKKPTACSSSLSNTIKLGKQIETEAGNWFMEFLDKTMDNKGVKKSKGKVEADARKIPQSLLLKVINWVEVEQSDSTNGPVHPRAAQIARKLRIKMKNP 605
MA LAPGILLKL+DGMN G KPTSEHRSSLLQVTDIVPADLDEK+L PK GFYIKVSDSSHSIYVSLPFEQDDLV+S+KMQLGQFIYVDRLEPGSPVPV +GAKPLPGRHPLMGTPEPLMGLR KGEK E++ N S PRR SWGTG +G+ SP LKPVPLDFDQCTPVK + ++VKF+GNFPMSPMI+G+ MRDGS VR+SVG LSKMV+AKG E+P++R+SC TPSS KF RSKSVCDRE RI KS FN A E KS TPPP LR+ T + V NA+ S K+ S+++ DS+ +++S +NLPGKLS LGKEAVQQRETAQK+ALQALRDASATENLVRSL+ S LTKSAK+D P+ CFDQFLEFHNQIVQAV+EMVS+QAA+ T+ N E + ++ E++S P S Q + + +SKRR ALYKSIA+FPER +Q+++LGKH+R S+KKGVA S ENDENKKP S SLS++IKLGKQIETEAGNWFMEFL+K M+ KG +KSKG E ARK+PQSL+LKVINWVEVEQSD PVHPRAA IARKLRIKMKNP
Sbjct: 1 MASLAPGILLKLLDGMNTGVKPTSEHRSSLLQVTDIVPADLDEKNLLPKHGFYIKVSDSSHSIYVSLPFEQDDLVMSNKMQLGQFIYVDRLEPGSPVPVVRGAKPLPGRHPLMGTPEPLMGLRAKGEKNEQKPNVKLSAPRRGSWGTGP------NGSENPLSPRNLKPVPLDFDQCTPVKERPPSAVKFSGNFPMSPMIRGKAMRDGSA--VRSSVGGAFLSKMVEAKG--ETPLIRKSCAVTPSSSKFSRSKSVCDREHRISKSTFNIA--------------------ENKSSTPPPILRNVNTADSAIVGGNAESHSKPKIASQSRILSGDSDSINTSLHMNLPGKLSNLGKEAVQQRETAQKVALQALRDASATENLVRSLKIFSNLTKSAKLDDPSTCFDQFLEFHNQIVQAVAEMVSIQAATTASETAKRSNAEPREATGKYHEEESSVLHELIPNSVEGQPNSESNASKRRAALYKSIAAFPERTEQKSVLGKHLRSSTLNQKATSEKKGVAASEAAGENDENKKP-GSSCSLSSSIKLGKQIETEAGNWFMEFLEKAME-KGTRKSKGTAEG-ARKLPQSLILKVINWVEVEQSDPNKRPVHPRAAVIARKLRIKMKNP 595
BLAST of DCAR_031102 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0EYJ8 ((Dicer-like protein {ECO:0000313|EMBL:GFY91059.1}))
HSP 1 Score: 734.561 bits (1895), Expect = 0.000e+0
Identity = 390/625 (62.40%), Postives = 471/625 (75.36%), Query Frame = 0
Match: A0A7J0EYJ8 ((Dicer-like protein {ECO:0000313|EMBL:GFY91059.1}))
HSP 1 Score: 734.561 bits (1895), Expect = 0.000e+0
Identity = 390/625 (62.40%), Postives = 471/625 (75.36%), Query Frame = 0
Query: 1 MAQLAPGILLKLIDGMNMGTKPTSEHRSSLLQVTDIVPADLDEKDLWPKQGFYIKVSDSSHSIYVSLPFEQDDLVLSDKMQLGQFIYVDRLEPGSPVPVAKGAKPLPGRHPLMGTPEPLMGLRKKGEKVEKRVNTVSSVPRRSSWGTGQRKEDGNSGNSVVSSPFCLKPVPLDFDQCTPVKGQ-NSVKFAGNFPMSPMIKGRVMRDGSCSGVRASVGAGVLSKMVDAKGEKESPMLRRSCFTPSSLKFPRSKSVCDREQRIPKSPFNSAALGSCSEILANRSKFSRRKIEKKSLTPPPSLRSSRTVAAENVAANAQQQSNVKLVSETQSQCVDSEPVDSSSSINLPGKLSTLGKEAVQQRETAQKIALQALRDASATENLVRSLRNLSKLTKSAKVDSPANCFDQFLEFHNQIVQAVSEMVSLQA---ASEMTSYNPNGEQTKKAARHSEQDSPVSNHNQDS-DTTASSKRRTALYKSIASFPERMDQRTILGKHMRS------DKKGV-------ALSTN--ENDENKKPTACSSSLSNTIKLGKQIETEAGNWFMEFLDKTMDNKGVKKSKGKVEADARKIPQSLLLKVINWVEVEQSDSTNGPVHPRAAQIARKLRIKMKNP 605
MA LAPG+LLKL++GMN G KPT EHRSSLLQVTDIVPADLDEK+LWPK GFY+KVSDSSHSIYVSLPFEQDDLV S+KMQLGQFIYVD+L+PGSPVPV KGAKPLPGRHPL+GTPEPLMGLR++GE+ +++ + S RR SWGTGQ G VSSP LKPVPLDFDQ TPVK + NS K GNF +SPMI+GRV +DG +R+S+G G+L+KM D KG+ + ++R+SC PS KF RSKSVC++E RIP++PFN+A EKKS TP P+LR++R A+ N+ NAQ SN + S+ +S +S + S ++NLPGKL+ LGKEA+QQRETAQKIALQALRDASATENLVRSL+ S L+K A+ ++PA CFDQFLEFHNQIVQAV+EMVS+QA ASEM + PN +Q + E+ S + +S D + +SKRRTALYKSIA+FPER +Q+TILGKH+RS ++KGV +L TN ENDENKKP +C SL NTIKLGKQIETEAGNWFM+FL+K + G+KKSKG E +ARK+PQSL+LKVINWVEVEQ DS+ PVHP+AAQIARKLRIKMKNP
Sbjct: 1 MATLAPGVLLKLLNGMNSGVKPTGEHRSSLLQVTDIVPADLDEKNLWPKLGFYVKVSDSSHSIYVSLPFEQDDLVFSNKMQLGQFIYVDKLDPGSPVPVVKGAKPLPGRHPLVGTPEPLMGLRERGERSDQKAISKVSAHRRGSWGTGQ------IGTDSVSSPLALKPVPLDFDQRTPVKERANSGKIGGNFLISPMIRGRVAKDGM---IRSSIGGGLLAKMADMKGDNPA-LVRKSCVMPSMSKFTRSKSVCEQEPRIPRNPFNTA--------------------EKKSTTPLPNLRNARVAASLNMGGNAQNYSNSNVSSQFES---ESGSDNKSLAMNLPGKLNMLGKEAMQQRETAQKIALQALRDASATENLVRSLKTFSNLSKKARAEAPAACFDQFLEFHNQIVQAVAEMVSIQAATTASEM-AQTPNMKQAE------EEPSILHELAHNSMDPSKASKRRTALYKSIAAFPERSEQKTILGKHLRSSSVKPFEQKGVYTPLGKLSLETNSSENDENKKPASC--SLCNTIKLGKQIETEAGNWFMDFLEKAFET-GLKKSKGTAEGEARKVPQSLILKVINWVEVEQCDSSKRPVHPQAAQIARKLRIKMKNP 582
BLAST of DCAR_031102 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9IQR0 ((Uncharacterized protein {ECO:0000313|EMBL:SPD26489.1}))
HSP 1 Score: 728.398 bits (1879), Expect = 0.000e+0
Identity = 395/626 (63.10%), Postives = 470/626 (75.08%), Query Frame = 0
Match: A0A2N9IQR0 ((Uncharacterized protein {ECO:0000313|EMBL:SPD26489.1}))
HSP 1 Score: 728.398 bits (1879), Expect = 0.000e+0
Identity = 395/626 (63.10%), Postives = 470/626 (75.08%), Query Frame = 0
Query: 1 MAQLAPGILLKLIDGMNMGTKPTSEHRSSLLQVTDIVPADLDEKDLWPKQGFYIKVSDSSHSIYVSLPFEQDDLVLSDKMQLGQFIYVDRLEPGSPVPVAKGAKPLPGRHPLMGTPEPLMGLRKKGEKVEKRVNTVSSVP--RRSSWGTGQRKEDGNSGNSVVSSPFCLKPVPLDFDQCTPVKGQNSVKFAG--NFPMSPMIKGRVMRDG-SCSGVRASVGAGVLSKMVDAKGEKESPMLRRSCFTPSSL-KFPRSKSVCDREQRIPKSPFNSAALGSCSEILANRSKFSRRKIEKKSLTPPPSLRSSRTVAAENVAANAQQ-QSNVKLVSETQSQCVDSEPVDSSSS----INLPGKLSTLGKEAVQQRETAQKIALQALRDASATENLVRSLRNLSKLTKSAKVDSPANCFDQFLEFHNQIVQAVSEMVSLQA---ASEMTSYNPNGEQTKKAARHSEQDSPVSN---HNQDSDTTAS----SKRRTALYKSIASFPERMDQRTILGKHMRSDKKGVALSTNENDENKKPTACSSSLSNTIKLGKQIETEAGNWFMEFLDKTMDNKGVKKSKGKVEADARKIPQSLLLKVINWVEVEQSDSTNGPVHPRAAQIARKLRIKMKNP 605
MA LAPGILLKL+DGMN G KPTSE+R+SLLQVTDIVPADLDEK+LWPK GFYIKVSDSSHSIYVSLP EQDD VLS+KMQLGQFIYVDRLEPGSPVPV KGAKPLPGRHP +GTPEPLMGLR+KGEK E + N+ S RR SWGTG G +G VSSP KPV LDFDQCTPVK + S G NFPMSPMI+GRV +DG S G+R S G G+L+KMVD+KGE + +LR+SC PSS KFPRS+SVC+RE +IP +PFN A + F + EKKS TPPPS RS+R + N+A +AQ S K+ + QSQ D+ D S+S +NLPGKLS LGKEAVQQRETAQKIALQALRDASATE LVRSL+ S L+KSA+ D+PA C D+FLEFH+QIVQAV++MVS+QA ASEM + NPN K +E++SP+ + HN + S SKRRTALYKSI++FPER +QRTI+G+ +RS+ A + EN+ENK P +C SLSNTIKLGKQ+ETEAGNWFM+FL+K ++ KG+KK+KG + D +K+PQSL+LKVINWVEVEQ DS+ PVHP+AAQ+ARKLRIKMKNP
Sbjct: 1 MATLAPGILLKLLDGMNTGVKPTSEYRNSLLQVTDIVPADLDEKNLWPKHGFYIKVSDSSHSIYVSLPSEQDDFVLSNKMQLGQFIYVDRLEPGSPVPVIKGAKPLPGRHPFVGTPEPLMGLREKGEKGEPKSNSKLSAKAHRRGSWGTGT----GLNGTEGVSSPMVFKPVNLDFDQCTPVKERGSCVKNGSNNFPMSPMIRGRVGKDGNSGGGIRCSFGGGLLAKMVDSKGESPA-LLRKSCVAPSSASKFPRSRSVCEREPKIPMTPFNLAV-----DTFPMPKFFEKNCTEKKSATPPPSARSARVATSLNMAGDAQNSNSKPKVTPQLQSQS-DNPASDISTSTSLPLNLPGKLSMLGKEAVQQRETAQKIALQALRDASATETLVRSLKMFSNLSKSARADAPATCLDRFLEFHHQIVQAVTDMVSIQAATSASEM-AQNPNA---KMKDSQTEEESPILHEITHNSMDQSRNSELNLSKRRTALYKSISAFPERGEQRTIMGRLLRSNSNQKA-AIVENNENKNPASC-CSLSNTIKLGKQVETEAGNWFMDFLEKALE-KGMKKTKGAADGDVKKVPQSLILKVINWVEVEQCDSSKRPVHPKAAQVARKLRIKMKNP 608
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5AVV0 | E-Value: 0.000e+0, PID: 64.92 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8533... [more] |
| A0A7J7GX57 | E-Value: 0.000e+0, PID: 64.98 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5945... [more] |
| A0A6P6V8Z0 | E-Value: 0.000e+0, PID: 64.85 | (uncharacterized protein LOC113718698 {ECO:0000313... [more] |
| A0A834G7Q8 | E-Value: 0.000e+0, PID: 64.31 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7124... [more] |
| A0A6P6V1B9 | E-Value: 0.000e+0, PID: 64.69 | (uncharacterized protein LOC113716388 {ECO:0000313... [more] |
| A0A2R6RF31 | E-Value: 0.000e+0, PID: 62.54 | (Uncharacterized protein {ECO:0000313|EMBL:PSS2862... [more] |
| A0A068TXV3 | E-Value: 0.000e+0, PID: 64.21 | (Uncharacterized protein {ECO:0000313|EMBL:CDP0016... [more] |
| A0A6I9TSJ2 | E-Value: 0.000e+0, PID: 64.97 | (uncharacterized protein LOC105168255 {ECO:0000313... [more] |
| A0A7J0EYJ8 | E-Value: 0.000e+0, PID: 62.40 | (Dicer-like protein {ECO:0000313|EMBL:GFY91059.1})[more] |
| A0A2N9IQR0 | E-Value: 0.000e+0, PID: 63.10 | (Uncharacterized protein {ECO:0000313|EMBL:SPD2648... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |