Resource Type:
Polypeptide
Name:
DCAR_029882
Identifier:
DCAR_029882.mRNA-protein
Sequence:
MYKLMKTTVAVLAAALFMLIETRVVSGEVVTCSGMVPMVYRNDKISIADF
GGVGDGQTLNTKAFREAIYRIQHLKRRGGTLLYIPSGVYLTGSFNLTSHM
TLYLAKGAVIKATQDTNDWPLIAPLPSYGRGRERPGDRYVSFIHGDGLHD
VIITGENGTIDGQGDVWWNMWRQRTLQFTRPNLIELMNSRNIIISNVIFK
NSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSHVCIEDSYIS
TGDDLVAVKSGWDEYGIAYGRPSKFITIRRLTGSSPFAGIAVGSETSGGV
ENVLAEHVSLFNMGVGIHLKTNIGRGGVIRNITVSSVYMENVRKGIKIAG
DVGDHPDENYNPNALPVLKNVVINNVWGEKVLQAGLIQGLKNAPFTGICL
SNIHLNGATGTRNLPWKCSDVSGTASQVSPLPCSELTSTDQAGACFVPF*
Sequence Length:
450
Sequence Checksum:
f4a6abc104d9bb6269b762e5ab511453
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_029882, derives from mRNA, DCAR_029882. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_029882 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_029882 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TS52 ((probable polygalacturonase {ECO:0000313|RefSeq:XP_027080974.1, ECO:0000313|RefSeq:XP_027080975.1}))
HSP 1 Score: 752.666 bits (1942), Expect = 0.000e+0
Identity = 362/424 (85.38%), Postives = 389/424 (91.75%), Query Frame = 0
Match: A0A6P6TS52 ((probable polygalacturonase {ECO:0000313|RefSeq:XP_027080974.1, ECO:0000313|RefSeq:XP_027080975.1}))
HSP 1 Score: 752.666 bits (1942), Expect = 0.000e+0
Identity = 362/424 (85.38%), Postives = 389/424 (91.75%), Query Frame = 0
Query: 26 SGEVVTCSGMVPMVYRNDKISIADFGGVGDGQTLNTKAFREAIYRIQHLKRRGGTLLYIPSGVYLTGSFNLTSHMTLYLAKGAVIKATQDTNDWPLIAPLPSYGRGRERPGDRYVSFIHGDGLHDVIITGENGTIDGQGDVWWNMWRQRTLQFTRPNLIELMNSRNIIISNVIFKNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSHVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSKFITIRRLTGSSPFAGIAVGSETSGGVENVLAEHVSLFNMGVGIHLKTNIGRGGVIRNITVSSVYMENVRKGIKIAGDVGDHPDENYNPNALPVLKNVVINNVWGEKVLQAGLIQGLKNAPFTGICLSNIHLNGATGTRNLPWKCSDVSGTASQVSPLPCSELTSTDQAGACFVPF 449
+ E VTCSG+VPM YRNDKISI DFGGVGDG+TLNTKAFREAIYRI+HL+RRGGTLLYIP GVYLT SFNLTSHMTLYLA+GAVIKA DT WPLIAPLPSYGRGRE PG RY+SFIHGDGLHDVIITGENGTIDGQG++WWNMWR+RTLQFTRPNLIE MNSR II+SNVIFKNSPFWNIHPVYCSNVVI YVTILAPADSPNTDGIDPDSS+HVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPS ITIRR+TGSSPFAGIA+GSETSGG+E+VLAEH++L+NMGVGIHLKTNIGRGGVIRNITVS+VYM+N RKGIKIAGDVGDHPD NYNPNALPV+K+V I +VWGE VLQAG IQGLKN+PFTGICLSNI+L G G RN PWKCSDVSG A QVSP PCSELTST QAG+C F
Sbjct: 24 AAEWVTCSGIVPMRYRNDKISITDFGGVGDGRTLNTKAFREAIYRIEHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLARGAVIKAATDTRYWPLIAPLPSYGRGRELPGGRYMSFIHGDGLHDVIITGENGTIDGQGEIWWNMWRRRTLQFTRPNLIEFMNSRGIIVSNVIFKNSPFWNIHPVYCSNVVINYVTILAPADSPNTDGIDPDSSTHVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSHGITIRRVTGSSPFAGIAIGSETSGGIEDVLAEHINLYNMGVGIHLKTNIGRGGVIRNITVSNVYMQNARKGIKIAGDVGDHPDNNYNPNALPVVKDVTIKDVWGEGVLQAGQIQGLKNSPFTGICLSNINLQGNVGPRNPPWKCSDVSGAAVQVSPWPCSELTSTYQAGSCSNSF 447
BLAST of DCAR_029882 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068UUC8 ((Uncharacterized protein {ECO:0000313|EMBL:CDP12145.1}))
HSP 1 Score: 749.584 bits (1934), Expect = 0.000e+0
Identity = 359/424 (84.67%), Postives = 390/424 (91.98%), Query Frame = 0
Match: A0A068UUC8 ((Uncharacterized protein {ECO:0000313|EMBL:CDP12145.1}))
HSP 1 Score: 749.584 bits (1934), Expect = 0.000e+0
Identity = 359/424 (84.67%), Postives = 390/424 (91.98%), Query Frame = 0
Query: 26 SGEVVTCSGMVPMVYRNDKISIADFGGVGDGQTLNTKAFREAIYRIQHLKRRGGTLLYIPSGVYLTGSFNLTSHMTLYLAKGAVIKATQDTNDWPLIAPLPSYGRGRERPGDRYVSFIHGDGLHDVIITGENGTIDGQGDVWWNMWRQRTLQFTRPNLIELMNSRNIIISNVIFKNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSHVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSKFITIRRLTGSSPFAGIAVGSETSGGVENVLAEHVSLFNMGVGIHLKTNIGRGGVIRNITVSSVYMENVRKGIKIAGDVGDHPDENYNPNALPVLKNVVINNVWGEKVLQAGLIQGLKNAPFTGICLSNIHLNGATGTRNLPWKCSDVSGTASQVSPLPCSELTSTDQAGACFVPF 449
+ E VTCSG+VPM YRNDKISI DFGGVGDG+TLNTKAFREAIYRI+HL+RRGGTLLY+P GVYLT SFNLTSHMTLYLA+GAVIKAT DT WPLIAPLPSYGRGRE PG RY+SFIHGDGLHDVIITGENGTIDGQG++WWNMWR+RTLQFTRPNLIE MNSR II+SNVIFKNSPFWNIHPVYCSNVVI YVTILAPADSPNTDGIDPDSS+HVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPS ITIRR+TGSSPFAGIA+GSETSGG+E+VLAEH++L+NMGVGIHLKTN+GRGGVIRNITVS+VYM+N RKGIKIAGDVGDHPD NYNPNALPV+K+V I +VWGE VLQ+G IQGLKN+PFTGICLSNI+L G G RN PWKCSDVSG A +VSP PCSELTST QAG+C F
Sbjct: 24 AAEWVTCSGIVPMRYRNDKISITDFGGVGDGRTLNTKAFREAIYRIEHLRRRGGTLLYMPPGVYLTESFNLTSHMTLYLARGAVIKATTDTRYWPLIAPLPSYGRGRELPGGRYMSFIHGDGLHDVIITGENGTIDGQGEIWWNMWRRRTLQFTRPNLIEFMNSRGIIVSNVIFKNSPFWNIHPVYCSNVVINYVTILAPADSPNTDGIDPDSSTHVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSHGITIRRVTGSSPFAGIAIGSETSGGIEDVLAEHINLYNMGVGIHLKTNVGRGGVIRNITVSNVYMQNARKGIKIAGDVGDHPDTNYNPNALPVVKDVTIKDVWGEGVLQSGQIQGLKNSPFTGICLSNINLQGNVGPRNPPWKCSDVSGAAVRVSPWPCSELTSTYQAGSCSNSF 447
BLAST of DCAR_029882 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6TY66 ((probable polygalacturonase {ECO:0000313|RefSeq:XP_027083340.1}))
HSP 1 Score: 749.199 bits (1933), Expect = 0.000e+0
Identity = 359/424 (84.67%), Postives = 390/424 (91.98%), Query Frame = 0
Match: A0A6P6TY66 ((probable polygalacturonase {ECO:0000313|RefSeq:XP_027083340.1}))
HSP 1 Score: 749.199 bits (1933), Expect = 0.000e+0
Identity = 359/424 (84.67%), Postives = 390/424 (91.98%), Query Frame = 0
Query: 26 SGEVVTCSGMVPMVYRNDKISIADFGGVGDGQTLNTKAFREAIYRIQHLKRRGGTLLYIPSGVYLTGSFNLTSHMTLYLAKGAVIKATQDTNDWPLIAPLPSYGRGRERPGDRYVSFIHGDGLHDVIITGENGTIDGQGDVWWNMWRQRTLQFTRPNLIELMNSRNIIISNVIFKNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSHVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSKFITIRRLTGSSPFAGIAVGSETSGGVENVLAEHVSLFNMGVGIHLKTNIGRGGVIRNITVSSVYMENVRKGIKIAGDVGDHPDENYNPNALPVLKNVVINNVWGEKVLQAGLIQGLKNAPFTGICLSNIHLNGATGTRNLPWKCSDVSGTASQVSPLPCSELTSTDQAGACFVPF 449
+ E VTCSG+VPM YRNDKISI DFGGVGDG+TLNTKAFREAIYRI+HL+RRGGTLLYIP GVYLT SFNLTSHMTLYLA+GAVIKAT DT WPLIAPLPSYGRGRE PG RY+SFIHG+GLHDVIITGENGTIDGQG++WWNMWR+RTLQFTRPNLIE MNSR II+SNVIFKNSPFWNIHPVYCSNVVI YVTILAPADSPNTDGIDPDSS+HVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPS ITIRR+TGSSPFAGIA+GSETSGG+E+VLAEH++L+NMGVGIHLKTN+GRGGVIRNITVS+VYM+N RKGIKIAGDVGDHPD NYNPNALPV+K+V I +VWGE VLQ+G IQGLKN+PFTGICLSNI+L G G RN PWKCSDVSG A +VSP PCSELTST QAG+C F
Sbjct: 24 AAEWVTCSGIVPMRYRNDKISITDFGGVGDGRTLNTKAFREAIYRIEHLRRRGGTLLYIPPGVYLTESFNLTSHMTLYLARGAVIKATTDTRYWPLIAPLPSYGRGRELPGGRYMSFIHGNGLHDVIITGENGTIDGQGEIWWNMWRRRTLQFTRPNLIEFMNSRGIIVSNVIFKNSPFWNIHPVYCSNVVINYVTILAPADSPNTDGIDPDSSTHVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSHGITIRRVTGSSPFAGIAIGSETSGGIEDVLAEHINLYNMGVGIHLKTNVGRGGVIRNITVSNVYMQNARKGIKIAGDVGDHPDTNYNPNALPVVKDVTIKDVWGEGVLQSGQIQGLKNSPFTGICLSNINLQGNVGPRNPPWKCSDVSGAAVRVSPWPCSELTSTYQAGSCSNSF 447
BLAST of DCAR_029882 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7HWN1 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g082170.3.1}))
HSP 1 Score: 743.421 bits (1918), Expect = 0.000e+0
Identity = 354/432 (81.94%), Postives = 393/432 (90.97%), Query Frame = 0
Match: A0A3Q7HWN1 ((Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g082170.3.1}))
HSP 1 Score: 743.421 bits (1918), Expect = 0.000e+0
Identity = 354/432 (81.94%), Postives = 393/432 (90.97%), Query Frame = 0
Query: 18 MLIETRVVSGEVVTCSGMVPMVYRNDKISIADFGGVGDGQTLNTKAFREAIYRIQHLKRRGGTLLYIPSGVYLTGSFNLTSHMTLYLAKGAVIKATQDTNDWPLIAPLPSYGRGRERPGDRYVSFIHGDGLHDVIITGENGTIDGQGDVWWNMWRQRTLQFTRPNLIELMNSRNIIISNVIFKNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSHVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSKFITIRRLTGSSPFAGIAVGSETSGGVENVLAEHVSLFNMGVGIHLKTNIGRGGVIRNITVSSVYMENVRKGIKIAGDVGDHPDENYNPNALPVLKNVVINNVWGEKVLQAGLIQGLKNAPFTGICLSNIHLNGATGTRNLPWKCSDVSGTASQVSPLPCSELTSTDQAGACFVPF 449
+L+ + +V+ E TCSG+VPM YRNDKISI DFGGVGDG+TLNTKAF+EAI+RIQHLKR+GGTLLYIP+GVYLTG F+LTS MTLYLA+GAVIKATQD + WPL+ PLPSYGRGRERPG RY+S +HGDGLHDVIITGENGTIDGQGDVWWNMWRQRTLQFTRP+L+ELMNSR I+ISNVIFKNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSS+VCIEDSYIS GDDLVAVKSGWD+YGIAYGRPS ITIRR+TGSSPFAGIAVGSETSGGV +VLAEH+SLFNMGVGIH+KTN+GRGG+IRNITVS+VYMEN R GIKIAGDVGDHPDEN+NPNALPV+K + I +VWGEKVLQAGLI GLKN+PF+GICLSNI+L G G RN WKCSDVSG A QVSP PC+ELTS+ + GAC F
Sbjct: 16 LLLTSWLVAAEGETCSGIVPMQYRNDKISILDFGGVGDGRTLNTKAFKEAIFRIQHLKRKGGTLLYIPAGVYLTGPFDLTSRMTLYLARGAVIKATQDPSQWPLVDPLPSYGRGRERPGARYMSLLHGDGLHDVIITGENGTIDGQGDVWWNMWRQRTLQFTRPHLVELMNSRGILISNVIFKNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISVGDDLVAVKSGWDQYGIAYGRPSHGITIRRITGSSPFAGIAVGSETSGGVVDVLAEHISLFNMGVGIHIKTNVGRGGMIRNITVSNVYMENARTGIKIAGDVGDHPDENFNPNALPVVKGIKIKDVWGEKVLQAGLIHGLKNSPFSGICLSNINLRGNPGPRNSIWKCSDVSGAAIQVSPFPCAELTSSQKTGACSTYF 447
BLAST of DCAR_029882 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1AW19 ((Polygalacturonase {ECO:0000313|EnsemblPlants:PGSC0003DMT400031688}))
HSP 1 Score: 742.265 bits (1915), Expect = 0.000e+0
Identity = 356/449 (79.29%), Postives = 399/449 (88.86%), Query Frame = 0
Match: M1AW19 ((Polygalacturonase {ECO:0000313|EnsemblPlants:PGSC0003DMT400031688}))
HSP 1 Score: 742.265 bits (1915), Expect = 0.000e+0
Identity = 356/449 (79.29%), Postives = 399/449 (88.86%), Query Frame = 0
Query: 1 MYKLMKTTVAVLAAALFMLIETRVVSGEVVTCSGMVPMVYRNDKISIADFGGVGDGQTLNTKAFREAIYRIQHLKRRGGTLLYIPSGVYLTGSFNLTSHMTLYLAKGAVIKATQDTNDWPLIAPLPSYGRGRERPGDRYVSFIHGDGLHDVIITGENGTIDGQGDVWWNMWRQRTLQFTRPNLIELMNSRNIIISNVIFKNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSHVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSKFITIRRLTGSSPFAGIAVGSETSGGVENVLAEHVSLFNMGVGIHLKTNIGRGGVIRNITVSSVYMENVRKGIKIAGDVGDHPDENYNPNALPVLKNVVINNVWGEKVLQAGLIQGLKNAPFTGICLSNIHLNGATGTRNLPWKCSDVSGTASQVSPLPCSELTSTDQAGACFVPF 449
M + + + + + L ++ + V GE TCSG+VPM YRNDKISI DFGGVGDG+TLNTKAF+EAI+RIQHLKR+GGTLLYIP+GVYLTG F+LTS MTLYLA GAVIKATQD + WPL+ PLPSYGRGRERPG RY+S +HGDGLHDVIITGENGTIDGQGDVWWNMWRQRTLQFTRP+L+ELMNSR I+ISNVIFKNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSS+VCIEDSYIS GDDLVAVKSGWD+YGIAYGRPS ITIRR+TGSSPFAGIAVGSETSGGV +VLAEH+SLFNMGVGIH+KTNIGRGG+IRNITVS+VYMEN R GIKIAGDVGDHP+EN+NPNALPV+K + I +VWGEKVLQAGLI GLKN+PF+GICLSNI+L+G G++N WKCSDVSG A QVSP PC+ELTS+ Q GAC F
Sbjct: 1 MNRWVGSIFLCIISTLLLMSWSVVAEGE--TCSGIVPMQYRNDKISILDFGGVGDGRTLNTKAFKEAIFRIQHLKRKGGTLLYIPAGVYLTGPFDLTSRMTLYLASGAVIKATQDPSQWPLVDPLPSYGRGRERPGARYISLLHGDGLHDVIITGENGTIDGQGDVWWNMWRQRTLQFTRPHLVELMNSRGILISNVIFKNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISVGDDLVAVKSGWDQYGIAYGRPSHGITIRRITGSSPFAGIAVGSETSGGVVDVLAEHISLFNMGVGIHIKTNIGRGGMIRNITVSNVYMENARTGIKIAGDVGDHPNENFNPNALPVVKGIKIKDVWGEKVLQAGLIHGLKNSPFSGICLSNINLHGNPGSQNSIWKCSDVSGAAIQVSPFPCAELTSSQQTGACSTYF 447
BLAST of DCAR_029882 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9T0U2 ((probable polygalacturonase {ECO:0000313|RefSeq:XP_011073737.1, ECO:0000313|RefSeq:XP_011073743.1}))
HSP 1 Score: 742.265 bits (1915), Expect = 0.000e+0
Identity = 354/446 (79.37%), Postives = 397/446 (89.01%), Query Frame = 0
Match: A0A6I9T0U2 ((probable polygalacturonase {ECO:0000313|RefSeq:XP_011073737.1, ECO:0000313|RefSeq:XP_011073743.1}))
HSP 1 Score: 742.265 bits (1915), Expect = 0.000e+0
Identity = 354/446 (79.37%), Postives = 397/446 (89.01%), Query Frame = 0
Query: 5 MKTTVAVLAAALFMLIETRVVS-GEVVTCSGMVPMVYRNDKISIADFGGVGDGQTLNTKAFREAIYRIQHLKRRGGTLLYIPSGVYLTGSFNLTSHMTLYLAKGAVIKATQDTNDWPLIAPLPSYGRGRERPGDRYVSFIHGDGLHDVIITGENGTIDGQGDVWWNMWRQRTLQFTRPNLIELMNSRNIIISNVIFKNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSHVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSKFITIRRLTGSSPFAGIAVGSETSGGVENVLAEHVSLFNMGVGIHLKTNIGRGGVIRNITVSSVYMENVRKGIKIAGDVGDHPDENYNPNALPVLKNVVINNVWGEKVLQAGLIQGLKNAPFTGICLSNIHLNGATGTRNLPWKCSDVSGTASQVSPLPCSELTSTDQAGACFVPF 449
+ ++ V + +LI ++ E VTCSG+VPM YR+DKISI DFGGVGDG TLNTKAF+EAIYRI+HL RRGGTLLY+P G YLTG FNLTSHMTLYLA+GAVIKAT DT +WPL++PLPSYGRGRE PG RY+SFIHGDGLHDVIITGENGTIDGQGDVWWNMWRQRTL+FTRPNL+EL+NS +IIISN+ FKNSPFWN+HPVYCSNVVI Y TI+APADSPNTDGIDPDSSSHVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPS+ ITIRR+TGSSPFAGIAVGSETSGGVE+VLAEH++LFNMG GIHLKTNIGRGGVIRNIT+S+VYM+ RKGIKI+GDVGDHPDENYNP ALPVLK+V I +VWG++V Q GLI+GLK+APF+GICLSNI L GATG R+LPW+CSDVSG A QVSPLPCSELTS+ Q GAC F
Sbjct: 4 LDFSIFVCFGIIVLLINCLALANAEEVTCSGIVPMRYRDDKISITDFGGVGDGVTLNTKAFKEAIYRIEHLHRRGGTLLYVPPGEYLTGPFNLTSHMTLYLARGAVIKATVDTEEWPLLSPLPSYGRGRELPGGRYMSFIHGDGLHDVIITGENGTIDGQGDVWWNMWRQRTLKFTRPNLVELLNSTSIIISNITFKNSPFWNLHPVYCSNVVINYATIVAPADSPNTDGIDPDSSSHVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSQDITIRRVTGSSPFAGIAVGSETSGGVEDVLAEHINLFNMGFGIHLKTNIGRGGVIRNITISNVYMDKARKGIKISGDVGDHPDENYNPKALPVLKDVKIKDVWGDRVQQPGLIRGLKDAPFSGICLSNISLGGATGQRDLPWQCSDVSGGAVQVSPLPCSELTSSQQIGACASSF 449
BLAST of DCAR_029882 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5E4G7K9 ((Full=PREDICTED: probable polygalacturonase {ECO:0000313|EMBL:VVA35714.1}))
HSP 1 Score: 740.725 bits (1911), Expect = 0.000e+0
Identity = 353/434 (81.34%), Postives = 391/434 (90.09%), Query Frame = 0
Match: A0A5E4G7K9 ((Full=PREDICTED: probable polygalacturonase {ECO:0000313|EMBL:VVA35714.1}))
HSP 1 Score: 740.725 bits (1911), Expect = 0.000e+0
Identity = 353/434 (81.34%), Postives = 391/434 (90.09%), Query Frame = 0
Query: 12 LAAALFMLIETRVVSGEVVTCSGMVPMVYRNDKISIADFGGVGDGQTLNTKAFREAIYRIQHLKRRGGTLLYIPSGVYLTGSFNLTSHMTLYLAKGAVIKATQDTNDWPLIAPLPSYGRGRERPGDRYVSFIHGDGLHDVIITGENGTIDGQGDVWWNMWRQRTLQFTRPNLIELMNSRNIIISNVIFKNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSHVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSKFITIRRLTGSSPFAGIAVGSETSGGVENVLAEHVSLFNMGVGIHLKTNIGRGGVIRNITVSSVYMENVRKGIKIAGDVGDHPDENYNPNALPVLKNVVINNVWGEKVLQAGLIQGLKNAPFTGICLSNIHLNGATGTRNLPWKCSDVSGTASQVSPLPCSELTSTDQAGAC 445
+ ++F+ + V+ EVVTCSG+VPM YRNDKISI DFGGVGDG TLNTKAFREAIYRI+HLKRRGGTLLYIP GVYLT SFNLTSHMTLYLAKGAVIKATQDT +WPLIAPLPSYGRGRE PG RY SFIHGDG+HDV+ITGENGTIDGQGDVWWNMWRQRTLQFTRPNLIE MNS+NIIISNVIF+NSPFWNIHPVYCSNVV+RYVTILAP DSPNTDG+DPDSSS+VCIEDSYISTGDDLVAVKSGWDEYGIAYGRPS ITIRR+ GSSPF+GIA+GSETSGGVENVLAEH++L+NMGVGIH+KTNIGRGG IRNITVS VYME VR+GIKIAGDVGDHPD+ YN NALPV+K + + ++WG +V QAGLI GLKN+PFTGICLSNI+L+G TG+R+ PWKCSD+SG A VSPL CSEL+S QA C
Sbjct: 6 FSLSIFLCLSYFSVA-EVVTCSGIVPMRYRNDKISITDFGGVGDGVTLNTKAFREAIYRIEHLKRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKGAVIKATQDTRNWPLIAPLPSYGRGRELPGGRYTSFIHGDGIHDVVITGENGTIDGQGDVWWNMWRQRTLQFTRPNLIEFMNSKNIIISNVIFQNSPFWNIHPVYCSNVVVRYVTILAPYDSPNTDGVDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSSGITIRRVRGSSPFSGIAIGSETSGGVENVLAEHINLYNMGVGIHIKTNIGRGGFIRNITVSDVYMEKVRRGIKIAGDVGDHPDDKYNQNALPVVKGITLKDIWGVQVQQAGLILGLKNSPFTGICLSNINLHGMTGSRSPPWKCSDISGAAHLVSPLQCSELSSAQQASTC 438
BLAST of DCAR_029882 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4Y1RGY1 ((Pectin lyase-like superfamily protein {ECO:0000313|EMBL:BBH03464.1}))
HSP 1 Score: 740.339 bits (1910), Expect = 0.000e+0
Identity = 351/418 (83.97%), Postives = 383/418 (91.63%), Query Frame = 0
Match: A0A4Y1RGY1 ((Pectin lyase-like superfamily protein {ECO:0000313|EMBL:BBH03464.1}))
HSP 1 Score: 740.339 bits (1910), Expect = 0.000e+0
Identity = 351/418 (83.97%), Postives = 383/418 (91.63%), Query Frame = 0
Query: 28 EVVTCSGMVPMVYRNDKISIADFGGVGDGQTLNTKAFREAIYRIQHLKRRGGTLLYIPSGVYLTGSFNLTSHMTLYLAKGAVIKATQDTNDWPLIAPLPSYGRGRERPGDRYVSFIHGDGLHDVIITGENGTIDGQGDVWWNMWRQRTLQFTRPNLIELMNSRNIIISNVIFKNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSHVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSKFITIRRLTGSSPFAGIAVGSETSGGVENVLAEHVSLFNMGVGIHLKTNIGRGGVIRNITVSSVYMENVRKGIKIAGDVGDHPDENYNPNALPVLKNVVINNVWGEKVLQAGLIQGLKNAPFTGICLSNIHLNGATGTRNLPWKCSDVSGTASQVSPLPCSELTSTDQAGAC 445
EVVTCSG+VPM YRNDKISI DFGGVGDG TLNTKAFREAIYRI+HLKRRGGTLLYIP GVYLT SFNLTSHMTLYLAKGAVIKATQDT +WPLIAPLPSYGRGRE PG RY SFIHGDG+HDV+ITGENGTIDGQGDVWWNMWRQRTLQFTRPNLIE MNS+NIIISNVIF+NSPFWNIHPVYCSNVV+RYVTILAP DSPNTDG+DPDSSS+VCIEDSYISTGDDLVAVKSGWDEYGIAYGRPS ITIRR+ GSSPF+GIA+GSETSGGVENVLAEH++L+NMGVGIH+KTNIGRGG IRNITVS VYME VR+GIKIAGDVGDHPD+ YN NALPV+K + + ++WG +V QAGLI GLKN+PFTGICLSNI+L+G TG+R+ PWKCSD+SG A VSPL CSEL+S QA C
Sbjct: 4 EVVTCSGIVPMRYRNDKISITDFGGVGDGVTLNTKAFREAIYRIEHLKRRGGTLLYIPPGVYLTESFNLTSHMTLYLAKGAVIKATQDTRNWPLIAPLPSYGRGRELPGGRYTSFIHGDGIHDVVITGENGTIDGQGDVWWNMWRQRTLQFTRPNLIEFMNSKNIIISNVIFQNSPFWNIHPVYCSNVVVRYVTILAPYDSPNTDGVDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSSGITIRRVRGSSPFSGIAIGSETSGGVENVLAEHINLYNMGVGIHIKTNIGRGGFIRNITVSDVYMEKVRRGIKIAGDVGDHPDDKYNQNALPVVKGITLKDIWGVQVQQAGLILGLKNSPFTGICLSNINLHGMTGSRSPPWKCSDISGAAHLVSPLQCSELSSAQQASTC 421
BLAST of DCAR_029882 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AEB1 ((Putative glycoside hydrolase family 28 family protein {ECO:0000313|EMBL:MPA53851.1}) (3.2.1.15 {ECO:0000313|EMBL:MPA53851.1}))
HSP 1 Score: 739.184 bits (1907), Expect = 0.000e+0
Identity = 367/442 (83.03%), Postives = 400/442 (90.50%), Query Frame = 0
Match: A0A5B7AEB1 ((Putative glycoside hydrolase family 28 family protein {ECO:0000313|EMBL:MPA53851.1}) (3.2.1.15 {ECO:0000313|EMBL:MPA53851.1}))
HSP 1 Score: 739.184 bits (1907), Expect = 0.000e+0
Identity = 367/442 (83.03%), Postives = 400/442 (90.50%), Query Frame = 0
Query: 8 TVAVLAAALFMLIETRVVSGEVVTCSGMVPMVYRNDKISIADFGGVGDGQTLNTKAFREAIYRIQHLKRRGGTLLYIPSGVYLTGSFNLTSHMTLYLAKGAVIKATQDTNDWPLIAPLPSYGRGRERPGDRYVSFIHGDGLHDVIITGENGTIDGQGDVWWNMWRQRTLQFTRPNLIELMNSRNIIISNVIFKNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSHVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSKFITIRRLTGSSPFAGIAVGSETSGGVENVLAEHVSLFNMGVGIHLKTNIGRGGVIRNITVSSVYMENVRKGIKIAGDVGDHPDENYNPNALPVLKNVVINNVWGEKVLQAGLIQGLKNAPFTGICLSNIHLNGATGTRNLPWKCSDVSGTASQVSPLPCSELTSTDQAGACFVPF 449
++ + AA+ L+ ++ EV+TCSG+VPM +RNDKISI DFGGVGDGQTLNTKAFREAIYRI+HL RRGGTLLYIP GVYLT SFNLTSHMTLYLA+GAVIKATQDT +W LIAPLPSYGRGRERPG RY+SFIHGDGLHDVIITGENGTIDGQGDVWWNMWRQRTLQFTRPNLIE MNS++IIISNVIFKNSPFWNIHPVYCSNVVIRYVTILAP DSPNTDGIDPDSSS+VCIEDSYISTGDDLVAVKSGWDEYGIAYGRPS ITIRR+TGSSPFAGIAVGSETSGGVENVL EH++LFNMGVGIHLKTNIGRGGVI+NITVS+VYME+VRKGIKIAGDVGDHPD+ +NP+ALPV+K+V I NVWGEKV Q G IQGL N+PFTGICLSNI+L+G G R+ PWKCSDVSG A QVSP PCSELTST G C +PF
Sbjct: 7 SIFLCFAAISWLLNCSALAEEVITCSGIVPMKHRNDKISITDFGGVGDGQTLNTKAFREAIYRIEHLSRRGGTLLYIPPGVYLTESFNLTSHMTLYLAEGAVIKATQDTGNWTLIAPLPSYGRGRERPGGRYMSFIHGDGLHDVIITGENGTIDGQGDVWWNMWRQRTLQFTRPNLIEFMNSKSIIISNVIFKNSPFWNIHPVYCSNVVIRYVTILAPHDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSNGITIRRVTGSSPFAGIAVGSETSGGVENVLVEHINLFNMGVGIHLKTNIGRGGVIKNITVSNVYMESVRKGIKIAGDVGDHPDDKFNPDALPVVKDVTIKNVWGEKVQQPGSIQGLSNSPFTGICLSNINLHGVEGPRSAPWKCSDVSGAAIQVSPWPCSELTSTHTTGVCSIPF 448
BLAST of DCAR_029882 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P5SP42 ((probable polygalacturonase {ECO:0000313|RefSeq:XP_021818640.1}))
HSP 1 Score: 738.413 bits (1905), Expect = 0.000e+0
Identity = 352/434 (81.11%), Postives = 391/434 (90.09%), Query Frame = 0
Match: A0A6P5SP42 ((probable polygalacturonase {ECO:0000313|RefSeq:XP_021818640.1}))
HSP 1 Score: 738.413 bits (1905), Expect = 0.000e+0
Identity = 352/434 (81.11%), Postives = 391/434 (90.09%), Query Frame = 0
Query: 12 LAAALFMLIETRVVSGEVVTCSGMVPMVYRNDKISIADFGGVGDGQTLNTKAFREAIYRIQHLKRRGGTLLYIPSGVYLTGSFNLTSHMTLYLAKGAVIKATQDTNDWPLIAPLPSYGRGRERPGDRYVSFIHGDGLHDVIITGENGTIDGQGDVWWNMWRQRTLQFTRPNLIELMNSRNIIISNVIFKNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSHVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSKFITIRRLTGSSPFAGIAVGSETSGGVENVLAEHVSLFNMGVGIHLKTNIGRGGVIRNITVSSVYMENVRKGIKIAGDVGDHPDENYNPNALPVLKNVVINNVWGEKVLQAGLIQGLKNAPFTGICLSNIHLNGATGTRNLPWKCSDVSGTASQVSPLPCSELTSTDQAGAC 445
+ ++F+ + V+ EVVTCSG+VPM YRNDKISI DFGGVGDG TLNTKAF+EAIYRI+HLKRRGGTLLYIP GVY+T SFNLTSHMTLYLAKGAVIKATQDT WPLIAPLPSYGRGRE PG RY+SFIHGDG+HDV+ITGENGTIDGQGDVWWNMWRQRTLQFTRPNLIE MNS+NIIISNVIF+NSPFWNIHPVYCSNVV+RYVTILAP DSPNTDG+DPDSSS+VCIEDSYISTGDDLVAVKSGWDEYGIAYGRPS ITIRR+ GSSPFAGIA+GSETSGGVENVLAEH++L+NMGVGIH+KTNIGRGG IRNITVS VYME VR+GIKIAGDVGDHPD+ YN NALPV+K + + ++WG +V QAG+I GLKNAPFTGICLSNI+L+G TG+R+ PWKCSD+SG A VSPL CSEL+S QA C
Sbjct: 6 FSLSIFLCLSYFSVA-EVVTCSGIVPMSYRNDKISITDFGGVGDGVTLNTKAFQEAIYRIEHLKRRGGTLLYIPPGVYVTESFNLTSHMTLYLAKGAVIKATQDTRTWPLIAPLPSYGRGRELPGGRYMSFIHGDGIHDVVITGENGTIDGQGDVWWNMWRQRTLQFTRPNLIEFMNSKNIIISNVIFQNSPFWNIHPVYCSNVVVRYVTILAPYDSPNTDGVDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSSGITIRRVRGSSPFAGIAIGSETSGGVENVLAEHINLYNMGVGIHIKTNIGRGGFIRNITVSDVYMEKVRRGIKIAGDVGDHPDDKYNQNALPVVKGITLKDIWGLQVQQAGVILGLKNAPFTGICLSNINLHGMTGSRSPPWKCSDISGAAHLVSPLQCSELSSAQQASTC 438
| Match Name | Stats | Description |
|---|---|---|
| A0A6P6TS52 | E-Value: 0.000e+0, PID: 85.38 | (probable polygalacturonase {ECO:0000313|RefSeq:XP... [more] |
| A0A068UUC8 | E-Value: 0.000e+0, PID: 84.67 | (Uncharacterized protein {ECO:0000313|EMBL:CDP1214... [more] |
| A0A6P6TY66 | E-Value: 0.000e+0, PID: 84.67 | (probable polygalacturonase {ECO:0000313|RefSeq:XP... [more] |
| A0A3Q7HWN1 | E-Value: 0.000e+0, PID: 81.94 | (Uncharacterized protein {ECO:0000313|EnsemblPlant... [more] |
| M1AW19 | E-Value: 0.000e+0, PID: 79.29 | (Polygalacturonase {ECO:0000313|EnsemblPlants:PGSC... [more] |
| A0A6I9T0U2 | E-Value: 0.000e+0, PID: 79.37 | (probable polygalacturonase {ECO:0000313|RefSeq:XP... [more] |
| A0A5E4G7K9 | E-Value: 0.000e+0, PID: 81.34 | (Full=PREDICTED: probable polygalacturonase {ECO:0... [more] |
| A0A4Y1RGY1 | E-Value: 0.000e+0, PID: 83.97 | (Pectin lyase-like superfamily protein {ECO:000031... [more] |
| A0A5B7AEB1 | E-Value: 0.000e+0, PID: 83.03 | (Putative glycoside hydrolase family 28 family pro... [more] |
| A0A6P5SP42 | E-Value: 0.000e+0, PID: 81.11 | (probable polygalacturonase {ECO:0000313|RefSeq:XP... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |