DCAR_030950

Resource Type: 
Polypeptide
Name: 
DCAR_030950
Identifier: 
DCAR_030950.mRNA-protein
Sequence: 
MSATTGPVIRKFIPVEHSQTHGSKLRLVSYNILAQAYVKSSLFPHSPAPC
LKWKARCQELLTVLRSFEADILCLQEVDEYDTFYKGNVESHGYSSVYIQR
SGTKRDGCGIFYRNNKLELVMQEKIDYNDLVNSIQEEEALCAGMDKITVS
DTERDTASKEDLQPKDTKDRGDPNDPRVRLKRDCVGIMTAFRLKESSEHF
VIVANTHIYWDPKWADVKLAQVKYLLSRLAKFKTLVSDKFDSEPSVLLSG
DFNSVPGDKVYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTN
CTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHL
PIGTVKXFEDMYASERFNTCSVLRQLPKFLFSDQQQAERILPIINNISSK
NGVYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTG
TLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGADFV
IRTK*
Sequence Length: 
505
Sequence Checksum: 
636e27fee33dc8e6b055b7fd135116f1
View location in JBrowse: 
DCARv2_Chr9:31346846..31353627+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_030950, derives from mRNA, DCAR_030950.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_030950 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
[Close]
BLAST of DCAR_030950 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TC70 ((carbon catabolite repressor protein 4 homolog 4-like isoform X2 {ECO:0000313|RefSeq:XP_011082145.1, ECO:0000313|RefSeq:XP_011082146.1}))

HSP 1 Score: 504.597 bits (1298), Expect = 1.479e-175
Identity = 242/361 (67.04%), Postives = 287/361 (79.50%), Query Frame = 0
 
Query:    1 MSATTGPVIRKFIPVEHSQT------HGSKLRLVSYNILAQAYVKSSLFPHSPAPCLKWKARCQELLTVLRSFEADILCLQEVDEYDTFYKGNVESHGYSSVYIQRSGTKRDGCGIFYRNNKLELVMQEKIDYNDLVNSIQEEEALCAGMDKITVSDTERDTASKEDLQPKDTK-DRGDPNDPRVRLKRDCVGIMTAFRLKESSEHFVIVANTHIYWDPKWADVKLAQVKYLLSRLAKFKTLVSDKFDSEPSVLLSGDFNSVPGDKVYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGT 354
            MS T GP+ RKF+PVE S+          K RLVSYNILAQAYVKS+ FPHSPAPCLKWKAR Q +LT+L+S EAD LCLQEVDEYDTFYK N+E+ GY+S+YIQRSG KRDGCGIFY  N  ELV++E+IDYNDLV+++++          + VS  + +  +   L  KD++ DRGDPNDPRVRLKRDCVGIM AFRL+  S H VI+ANTH+YWDP+WADVK+AQ KYLLSRLA FK LVSDKFD  P ++L+GDFNSVPGD+VY+YL+SG  SM P  E  +DLP+PL SVYA+ RGEP+FTNCTPGFTGTLDYI FSPSG + P+SYL+LPEA+SSDV GGLPNY+HPSDHLPIG 
Sbjct:    1 MSTTPGPLCRKFVPVEQSEVTSISKPASFKFRLVSYNILAQAYVKSTYFPHSPAPCLKWKARSQAILTILKSLEADFLCLQEVDEYDTFYKKNMENLGYASIYIQRSGRKRDGCGIFYNQNSAELVIEEEIDYNDLVDTVEDGTTSPKEKYGVLVSGNKEEPKAGSKL--KDSQADRGDPNDPRVRLKRDCVGIMAAFRLQNPSSHHVIIANTHLYWDPEWADVKIAQAKYLLSRLAAFKDLVSDKFDCSPPIILAGDFNSVPGDQVYQYLVSGTNSMGP--EMADDLPMPLSSVYAFTRGEPEFTNCTPGFTGTLDYIFFSPSGDLKPVSYLELPEAESSDVIGGLPNYFHPSDHLPIGA 357

HSP 2 Score: 157.532 bits (397), Expect = 7.530e-41
Identity = 80/132 (60.61%), Postives = 99/132 (75.00%), Query Frame = 0
 
Query:  372 VLRQLPKF--LFSDQQQAERILPIINNISSKNG--VYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGADF 499
            +L +L  F  L SD+      + +  + +S  G  VY+YL+SG  SM P  E  +DLP+PL SVYA+ RGEP+FTNCTPGFTGTLDYI FSPSG + P+SYL+LPEA+SSDV GGLPNY+HPSDHLPIGA+F
Sbjct:  230 LLSRLAAFKDLVSDKFDCSPPIILAGDFNSVPGDQVYQYLVSGTNSMGP--EMADDLPMPLSSVYAFTRGEPEFTNCTPGFTGTLDYIFFSPSGDLKPVSYLELPEAESSDVIGGLPNYFHPSDHLPIGAEF 359
[Close]
BLAST of DCAR_030950 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9H7V6 ((Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 {ECO:0000313|EMBL:PIN13607.1}) (3.1.13.4 {ECO:0000313|EMBL:PIN13607.1}))

HSP 1 Score: 504.597 bits (1298), Expect = 2.246e-175
Identity = 242/361 (67.04%), Postives = 288/361 (79.78%), Query Frame = 0
 
Query:    1 MSATTGPVIRKFIPVEH------SQTHGSKLRLVSYNILAQAYVKSSLFPHSPAPCLKWKARCQELLTVLRSFEADILCLQEVDEYDTFYKGNVESHGYSSVYIQRSGTKRDGCGIFYRNNKLELVMQEKIDYNDLVNSIQEEEALCAGMD-KITVSDTERDTASKEDLQPKDTKDRGDPNDPRVRLKRDCVGIMTAFRLKESSEHFVIVANTHIYWDPKWADVKLAQVKYLLSRLAKFKTLVSDKFDSEPSVLLSGDFNSVPGDKVYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGT 354
            MS+T GP+ RKF+PVE       S+  G K RLVSYNILAQAYVKS+ FPHSPAPCLKWKAR Q +LT+L+  EAD LCLQEVDEYDTFYK N+E+ GY+S+Y+QRSG KRDGCGIFY+ N  ELV++EKIDYNDLV S+++ E      +    VS+ E+D+    +L+    +DRGDPNDPRVRLKRDCVG M AFRLK  S H VI+ANTHIYWDP+WADVK+AQ KYLLSRLA FK L+S+KFD  PS++++GDFNSVPGD VY+YL+SG  S  P+ E  ++LPIPL SVYA+ R EP+FTNCTPGFTGTLDYI FSPSG I P+SYL+LPEA+SSDV GGLPNY+HPSDHLPIG 
Sbjct:   19 MSSTPGPLCRKFVPVEQGEVTSISKPAGFKFRLVSYNILAQAYVKSAYFPHSPAPCLKWKARSQAILTLLKGLEADFLCLQEVDEYDTFYKTNMENLGYASIYVQRSGRKRDGCGIFYKQNCAELVIEEKIDYNDLVPSVEDSETTSTDNEGNELVSENEKDSKMGSELK-DSQEDRGDPNDPRVRLKRDCVGTMAAFRLKSPSPHHVIIANTHIYWDPEWADVKIAQAKYLLSRLAGFKKLISNKFDCSPSIIVAGDFNSVPGDLVYKYLVSGTNSTAPETE--DELPIPLSSVYAFTRREPEFTNCTPGFTGTLDYIFFSPSGDIKPVSYLELPEAESSDVNGGLPNYFHPSDHLPIGA 376

HSP 2 Score: 154.836 bits (390), Expect = 1.210e-39
Identity = 71/101 (70.30%), Postives = 84/101 (83.17%), Query Frame = 0
 
Query:  403 VYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGADFVIRT 503
            VY+YL+SG  S  P+ E  ++LPIPL SVYA+ R EP+FTNCTPGFTGTLDYI FSPSG I P+SYL+LPEA+SSDV GGLPNY+HPSDHLPIGA+F +  
Sbjct:  284 VYKYLVSGTNSTAPETE--DELPIPLSSVYAFTRREPEFTNCTPGFTGTLDYIFFSPSGDIKPVSYLELPEAESSDVNGGLPNYFHPSDHLPIGAEFEVEA 382
[Close]
BLAST of DCAR_030950 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TM96 ((carbon catabolite repressor protein 4 homolog 4-like isoform X1 {ECO:0000313|RefSeq:XP_011082141.1}))

HSP 1 Score: 503.827 bits (1296), Expect = 5.134e-175
Identity = 242/361 (67.04%), Postives = 287/361 (79.50%), Query Frame = 0
 
Query:    1 MSATTGPVIRKFIPVEHSQT------HGSKLRLVSYNILAQAYVKSSLFPHSPAPCLKWKARCQELLTVLRSFEADILCLQEVDEYDTFYKGNVESHGYSSVYIQRSGTKRDGCGIFYRNNKLELVMQEKIDYNDLVNSIQEEEALCAGMDKITVSDTERDTASKEDLQPKDTK-DRGDPNDPRVRLKRDCVGIMTAFRLKESSEHFVIVANTHIYWDPKWADVKLAQVKYLLSRLAKFKTLVSDKFDSEPSVLLSGDFNSVPGDKVYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGT 354
            MS T GP+ RKF+PVE S+          K RLVSYNILAQAYVKS+ FPHSPAPCLKWKAR Q +LT+L+S EAD LCLQEVDEYDTFYK N+E+ GY+S+YIQRSG KRDGCGIFY  N  ELV++E+IDYNDLV+++++          + VS  + +  +   L  KD++ DRGDPNDPRVRLKRDCVGIM AFRL+  S H VI+ANTH+YWDP+WADVK+AQ KYLLSRLA FK LVSDKFD  P ++L+GDFNSVPGD+VY+YL+SG  SM P  E  +DLP+PL SVYA+ RGEP+FTNCTPGFTGTLDYI FSPSG + P+SYL+LPEA+SSDV GGLPNY+HPSDHLPIG 
Sbjct:   19 MSTTPGPLCRKFVPVEQSEVTSISKPASFKFRLVSYNILAQAYVKSTYFPHSPAPCLKWKARSQAILTILKSLEADFLCLQEVDEYDTFYKKNMENLGYASIYIQRSGRKRDGCGIFYNQNSAELVIEEEIDYNDLVDTVEDGTTSPKEKYGVLVSGNKEEPKAGSKL--KDSQADRGDPNDPRVRLKRDCVGIMAAFRLQNPSSHHVIIANTHLYWDPEWADVKIAQAKYLLSRLAAFKDLVSDKFDCSPPIILAGDFNSVPGDQVYQYLVSGTNSMGP--EMADDLPMPLSSVYAFTRGEPEFTNCTPGFTGTLDYIFFSPSGDLKPVSYLELPEAESSDVIGGLPNYFHPSDHLPIGA 375

HSP 2 Score: 157.532 bits (397), Expect = 9.811e-41
Identity = 80/132 (60.61%), Postives = 99/132 (75.00%), Query Frame = 0
 
Query:  372 VLRQLPKF--LFSDQQQAERILPIINNISSKNG--VYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGADF 499
            +L +L  F  L SD+      + +  + +S  G  VY+YL+SG  SM P  E  +DLP+PL SVYA+ RGEP+FTNCTPGFTGTLDYI FSPSG + P+SYL+LPEA+SSDV GGLPNY+HPSDHLPIGA+F
Sbjct:  248 LLSRLAAFKDLVSDKFDCSPPIILAGDFNSVPGDQVYQYLVSGTNSMGP--EMADDLPMPLSSVYAFTRGEPEFTNCTPGFTGTLDYIFFSPSGDLKPVSYLELPEAESSDVIGGLPNYFHPSDHLPIGAEF 377
[Close]
BLAST of DCAR_030950 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C3M4 (Endo/exonuclease/phosphatase domain-containing protein {ECO:0000259|Pfam:PF03372} (Fragment))

HSP 1 Score: 503.442 bits (1295), Expect = 9.217e-175
Identity = 242/360 (67.22%), Postives = 280/360 (77.78%), Query Frame = 0
 
Query:    1 MSATTGPVIRKFIPVEHSQTH------GSKLRLVSYNILAQAYVKSSLFPHSPAPCLKWKARCQELLTVLRSFEADILCLQEVDEYDTFYKGNVESHGYSSVYIQRSGTKRDGCGIFYRNNKLELVMQEKIDYNDLVNSIQEEEALCAGMDKITVSDTERDTASKEDLQPKDTKDRGDPNDPRVRLKRDCVGIMTAFRLKESSEHFVIVANTHIYWDPKWADVKLAQVKYLLSRLAKFKTLVSDKFDSEPSVLLSGDFNSVPGDKVYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGT 354
            MS T  P+  KFIPVE S+        G K  LVSYNILAQ YVKS+LFPHSP+PCLKWKAR Q +LTVL+S  AD LCLQE+DEYD+FYKGN+ESHGYSS+YIQRSG K DGCGIFY++   ELV++EKI+YNDLVNS Q+   LC   D   ++   +D    + L  K T   GDPNDP  RLKRDCVGIM AF+LK+ S+H +IVANTH+YWDP+WADVKLAQ KYLLS LA+FKTLVSDK    PSV+++GDFNS PGDKVY+YLISG+ +M P LE  EDLPIPL SVYA  RGEPQFTN TPGFTGTLDYI FS SG I P+SYL+LPE +SSD+ GGLPNY+HPSDHLPIG 
Sbjct:   25 MSTTAAPLCPKFIPVEQSEISSTSRPDGFKFSLVSYNILAQVYVKSALFPHSPSPCLKWKARSQAILTVLKSLGADFLCLQELDEYDSFYKGNMESHGYSSIYIQRSGQKHDGCGIFYKHKSAELVLEEKIEYNDLVNSNQDGTTLCVDKDNDALASGNKDAEPNDGLVEKKT--HGDPNDPSFRLKRDCVGIMGAFKLKDPSQHLIIVANTHLYWDPEWADVKLAQAKYLLSCLAQFKTLVSDKLGCTPSVIVAGDFNSTPGDKVYQYLISGSSTMGPPLECSEDLPIPLQSVYASTRGEPQFTNVTPGFTGTLDYIFFSSSGDIKPVSYLELPEPESSDINGGLPNYHHPSDHLPIGA 382

HSP 2 Score: 158.303 bits (399), Expect = 5.745e-41
Identity = 82/133 (61.65%), Postives = 97/133 (72.93%), Query Frame = 0
 
Query:  371 SVLRQLPKFLFSDQQQAERILPIINNISSKNG--VYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGADFVI 501
            S L Q  K L SD+      + +  + +S  G  VY+YLISG+ +M P LE  EDLPIPL SVYA  RGEPQFTN TPGFTGTLDYI FS SG I P+SYL+LPE +SSD+ GGLPNY+HPSDHLPIGA+F +
Sbjct:  255 SCLAQF-KTLVSDKLGCTPSVIVAGDFNSTPGDKVYQYLISGSSTMGPPLECSEDLPIPLQSVYASTRGEPQFTNVTPGFTGTLDYIFFSSSGDIKPVSYLELPEPESSDINGGLPNYHHPSDHLPIGAEFEV 386
[Close]
BLAST of DCAR_030950 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5A7Q424 ((Glucose-repressible alcohol dehydrogenasetranscriptional effector {ECO:0000313|EMBL:GER39814.1}))

HSP 1 Score: 488.419 bits (1256), Expect = 5.435e-169
Identity = 238/362 (65.75%), Postives = 286/362 (79.01%), Query Frame = 0
 
Query:    1 MSATTGPVIRKFIPVEHSQ-----THGS-KLRLVSYNILAQAYVKSSLFPHSPAPCLKWKARCQELLTVLRSFEADILCLQEVDEYDTFYKGNVESHGYSSVYIQRSGTKRDGCGIFYRNNKLELVMQEKIDYNDLVNSIQEEEALCAGM-DKITVSDTERDTASKEDLQPKDTK-DRGDPNDPRVRLKRDCVGIMTAFRLKESSEHFVIVANTHIYWDPKWADVKLAQVKYLLSRLAKFKTLVSDKFDSEPSVLLSGDFNSVPGDKVYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGT 354
            MS   GP+ RKF+PVE S+      H S K  LV+YN+LAQAYVKS+ FPHSPAPCLKWKAR + +LTVL+S  +D  CLQEVDEYDTFYK N+ES GY+S+YIQRSG KRDGCGIFY+ N  ELV++EKIDYNDLV+ +Q+ +       +K+ V +++ +   K  L+ KD++ DRGD  DPRVRLKRDCVG M AFRLKE S   VI+ANTH+YWDP+WADVK+AQ KYLLSRLA FK LVS+KFD  PSV+++GDFNSVPGD+VY+YL+SG  SMEP  E  +D PIPL SVYAY +GEP+FTNCTPGFT TLDYILFSPS  I P+SYL+LP ++SSDV GGLPNY+HPSDHLPIG 
Sbjct:   19 MSTAPGPICRKFVPVEQSEITSTLNHASFKFSLVAYNVLAQAYVKSAYFPHSPAPCLKWKARSESILTVLKSLGSDFFCLQEVDEYDTFYKKNMESLGYASIYIQRSGRKRDGCGIFYKQNNAELVVEEKIDYNDLVDMVQDGKTSSTDTGEKLLVGESKVEL--KAGLEQKDSQTDRGDLLDPRVRLKRDCVGTMAAFRLKELSSRHVIIANTHLYWDPEWADVKIAQAKYLLSRLAGFKKLVSEKFDCSPSVIVAGDFNSVPGDQVYQYLVSGTNSMEP--EAVDDKPIPLSSVYAYTKGEPEFTNCTPGFTDTLDYILFSPSDDIKPVSYLELPSSESSDVIGGLPNYFHPSDHLPIGA 376

HSP 2 Score: 152.91 bits (385), Expect = 5.801e-39
Identity = 71/99 (71.72%), Postives = 83/99 (83.84%), Query Frame = 0
 
Query:  403 VYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGADFVI 501
            VY+YL+SG  SMEP  E  +D PIPL SVYAY +GEP+FTNCTPGFT TLDYILFSPS  I P+SYL+LP ++SSDV GGLPNY+HPSDHLPIGA+F +
Sbjct:  284 VYQYLVSGTNSMEP--EAVDDKPIPLSSVYAYTKGEPEFTNCTPGFTDTLDYILFSPSDDIKPVSYLELPSSESSDVIGGLPNYFHPSDHLPIGAEFEV 380
[Close]
BLAST of DCAR_030950 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7TFE7 (Endo/exonuclease/phosphatase domain-containing protein {ECO:0000259|Pfam:PF03372})

HSP 1 Score: 488.419 bits (1256), Expect = 1.057e-168
Identity = 239/361 (66.20%), Postives = 284/361 (78.67%), Query Frame = 0
 
Query:    1 MSATTGPVIRKFIPVE------HSQTHGSKLRLVSYNILAQAYVKSSLFPHSPAPCLKWKARCQELLTVLRSFEADILCLQEVDEYDTFYKGNVESHGYSSVYIQRSGTKRDGCGIFYRNNKLELVMQEKIDYNDLVNSIQEEEALCAGMDKITVSDTERDTASKEDLQPKDT-KDRGDPNDPRVRLKRDCVGIMTAFRLKESSEHFVIVANTHIYWDPKWADVKLAQVKYLLSRLAKFKTLVSDKFDSEPSVLLSGDFNSVPGDKVYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGT 354
            MS    P+I KFI VE       S   G +  LVSYNILAQ YVKSSLFPHSP+PCLKWKAR Q +LTVLR+  AD LCLQEVDEYD+FYKGN++S+GYSS+Y+QRSG K DGCGIFY++N  ELV++EKI+YNDLV+ + ++ +        T +    D   K+   P++T ++RGDPNDPRVRLKRDCVGIM AFRLK+ S H VIVANTH+YWDP+WADVKLAQ KYLLSRLA+FKT+VSDKF+  PSVL++GDFNS PGDKVY+YL+SGN S+ PQLE  + LPIPL SVY + RGEP FTNCTP FT TLDYI FSPSG I P+S+L+LPE DSSDV GGLPN++HPSDHLPIG 
Sbjct:   28 MSTAAAPIIPKFISVEGVDINSRSIPDGFRFSLVSYNILAQVYVKSSLFPHSPSPCLKWKARSQAILTVLRNLGADFLCLQEVDEYDSFYKGNMDSNGYSSIYVQRSGQKHDGCGIFYKHNSAELVLEEKIEYNDLVD-LNDDGSYSNDRHCDTPASANSDAEPKKGSSPQNTTEERGDPNDPRVRLKRDCVGIMAAFRLKDPSHHLVIVANTHLYWDPEWADVKLAQAKYLLSRLAQFKTVVSDKFECTPSVLVAGDFNSTPGDKVYQYLVSGNSSV-PQLECLDGLPIPLCSVYDFTRGEPPFTNCTPDFTNTLDYIFFSPSGHIKPVSFLELPEPDSSDVAGGLPNHHHPSDHLPIGA 386

HSP 2 Score: 149.058 bits (375), Expect = 1.868e-37
Identity = 77/134 (57.46%), Postives = 99/134 (73.88%), Query Frame = 0
 
Query:  372 VLRQLPKF--LFSDQQQAERILPIINNISSKNG--VYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGADFVI 501
            +L +L +F  + SD+ +    + +  + +S  G  VY+YL+SGN S+ PQLE  + LPIPL SVY + RGEP FTNCTP FT TLDYI FSPSG I P+S+L+LPE DSSDV GGLPN++HPSDHLPIGA+F +
Sbjct:  258 LLSRLAQFKTVVSDKFECTPSVLVAGDFNSTPGDKVYQYLVSGNSSV-PQLECLDGLPIPLCSVYDFTRGEPPFTNCTPDFTNTLDYIFFSPSGHIKPVSFLELPEPDSSDVAGGLPNHHHPSDHLPIGAEFKV 390
[Close]
BLAST of DCAR_030950 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A830BHQ7 ((Carbon catabolite repressor protein 4 homolog 4 {ECO:0000313|EMBL:GFP81561.1}))

HSP 1 Score: 488.419 bits (1256), Expect = 1.534e-168
Identity = 236/363 (65.01%), Postives = 289/363 (79.61%), Query Frame = 0
 
Query:    1 MSATTGPVIRKFIPVEHSQTH------GSKLRLVSYNILAQAYVKSSLFPHSPAPCLKWKARCQELLTVLRSFEADILCLQEVDEYDTFYKGNVESHGYSSVYIQRSGTKRDGCGIFYRNNK-LELVMQEKIDYNDLVNSIQEEEALCAGMD-KITVSDTERDTASKEDLQPKDTK-DRGDPNDPRVRLKRDCVGIMTAFRLKESSEHFVIVANTHIYWDPKWADVKLAQVKYLLSRLAKFKTLVSDKFDSEPSVLLSGDFNSVPGDKVYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGT 354
            MS+  GP+ RKF+PVE S+          K RLVSYNILAQAYVKSS FPHSPAPCLKWKAR Q +LTVL++ EAD LCLQEVDEYD+FYK N+ES GY+S+YIQRSG KRDGCGIFY+ NK  ELV++EKIDYNDLV+++ + +      D K  V + + +  SK D+  KD++ DRGDPNDPRVR KRDCVGIM AFRL   +   +I+ANTH+YWDP+WADVK++Q KYLLSRL+ FK LVS+KFD  PS++++GDFNSVPGD+VY+YL+SG   + P+    ++LPIPL SVYAY +GEP+FTNCTPGFTGTLDYILFSPS  I P+SYL+LP ++SSDV+GGLPNY+HPSDHLPIG 
Sbjct:   47 MSSIPGPICRKFVPVEQSEISSIGKHDAFKFRLVSYNILAQAYVKSSYFPHSPAPCLKWKARSQAVLTVLKNLEADFLCLQEVDEYDSFYKKNMESLGYASIYIQRSGKKRDGCGIFYKQNKYAELVIEEKIDYNDLVDTVGDPKTSSVDKDNKAQVGEIKEE--SKADINQKDSQVDRGDPNDPRVRFKRDCVGIMAAFRLDNPTCQHIIIANTHLYWDPEWADVKISQAKYLLSRLSGFKKLVSNKFDCSPSIIVTGDFNSVPGDQVYQYLVSGANLVGPETVD-DNLPIPLSSVYAYTKGEPEFTNCTPGFTGTLDYILFSPSSDIKPVSYLELPGSESSDVRGGLPNYFHPSDHLPIGA 406

HSP 2 Score: 149.058 bits (375), Expect = 2.786e-37
Identity = 68/99 (68.69%), Postives = 84/99 (84.85%), Query Frame = 0
 
Query:  403 VYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGADFVI 501
            VY+YL+SG   + P+    ++LPIPL SVYAY +GEP+FTNCTPGFTGTLDYILFSPS  I P+SYL+LP ++SSDV+GGLPNY+HPSDHLPIGA+F +
Sbjct:  313 VYQYLVSGANLVGPETVD-DNLPIPLSSVYAYTKGEPEFTNCTPGFTGTLDYILFSPSSDIKPVSYLELPGSESSDVRGGLPNYFHPSDHLPIGAEFEV 410
[Close]
BLAST of DCAR_030950 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A022RB43 (Endo/exonuclease/phosphatase domain-containing protein {ECO:0000259|Pfam:PF03372})

HSP 1 Score: 483.411 bits (1243), Expect = 6.091e-167
Identity = 237/363 (65.29%), Postives = 284/363 (78.24%), Query Frame = 0
 
Query:    1 MSATTGPVIRKFIPVEHSQT------HGSKLRLVSYNILAQAYVKSSLFPHSPAPCLKWKARCQELLTVLRSFEADILCLQEVDEYDTFYKGNVESHGYSSVYIQRSGTKRDGCGIFYRNNKLELVMQEKIDYNDLVNSIQEE--EALCAGMDKITVSDTERDTASKEDLQPKDTKDRGDPNDPRVRLKRDCVGIMTAFRLKESSEHFVIVANTHIYWDPKWADVKLAQVKYLLSRLAKFKTLVSDKFDSEPSVLLSGDFNSVPGDKVYEYLISGNPSMEPQLEQREDLP-IPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGT 354
            MS+T GP+ RKF+PVE S+        G K RLVSYNILAQAYVKSS FPHSP P LKWKAR Q +LTVL+S EAD LCLQEVDEY+TFYK N+ES GY+S+++QR G KRDGCGIFY+ N  ELV++EKIDYNDLV  I++E   ++     K+ V+ T      KE+ + ++  +RGDPNDPRVRLKRDCVG M AFRLK  S H +I+ANTH+YWDP+WADVK+AQ KYLLSRL+ F+ LVS+KFD  PSV+++GDFNSVPGD+VY YLISG   + P  E  +++P IPL SVYA+ RGEP+FTNCTPGFT TLDYI FSPS  I P+SYLDLPEA+SSDV GGLPNY+HPSDHLPIG 
Sbjct:   19 MSSTPGPMCRKFVPVEQSEVTSISKDAGFKFRLVSYNILAQAYVKSSYFPHSPPPSLKWKARSQAILTVLKSLEADFLCLQEVDEYETFYKKNMESLGYASIHVQRGGRKRDGCGIFYKQNNAELVIEEKIDYNDLVELIEDETNSSVDNSDKKLIVAGT------KEESKAENEVERGDPNDPRVRLKRDCVGTMAAFRLKSPSCHHIIIANTHLYWDPEWADVKIAQAKYLLSRLSGFQKLVSEKFDCSPSVIVAGDFNSVPGDQVYRYLISGTNVVGP--ETADEVPKIPLSSVYAFTRGEPEFTNCTPGFTDTLDYIFFSPSRDIKPVSYLDLPEAESSDVSGGLPNYFHPSDHLPIGA 373

HSP 2 Score: 145.591 bits (366), Expect = 2.702e-36
Identity = 70/102 (68.63%), Postives = 81/102 (79.41%), Query Frame = 0
 
Query:  403 VYEYLISGNPSMEPQLEQREDLP-IPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGADFVIRT 503
            VY YLISG   + P  E  +++P IPL SVYA+ RGEP+FTNCTPGFT TLDYI FSPS  I P+SYLDLPEA+SSDV GGLPNY+HPSDHLPIGA+F +  
Sbjct:  280 VYRYLISGTNVVGP--ETADEVPKIPLSSVYAFTRGEPEFTNCTPGFTDTLDYIFFSPSRDIKPVSYLDLPEAESSDVSGGLPNYFHPSDHLPIGAEFEVEA 379
[Close]
BLAST of DCAR_030950 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6L9H7 (Endo/exonuclease/phosphatase domain-containing protein {ECO:0000259|Pfam:PF03372})

HSP 1 Score: 479.945 bits (1234), Expect = 8.038e-166
Identity = 233/358 (65.08%), Postives = 279/358 (77.93%), Query Frame = 0
 
Query:    3 ATTGPVIRKFIPVEH------SQTHGSKLRLVSYNILAQAYVKSSLFPHSPAPCLKWKARCQELLTVLRSFEADILCLQEVDEYDTFYKGNVESHGYSSVYIQRSGTKRDGCGIFYRNNKLELVMQEKIDYNDLVNSIQEEEALCAGMDKITVSDTERDTASKEDLQPKDTKDRGDPNDPRVRLKRDCVGIMTAFRLKESSEHFVIVANTHIYWDPKWADVKLAQVKYLLSRLAKFKTLVSDKFDSEPSVLLSGDFNSVPGDKVYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGT 354
            AT  PV  KF+PVE       S++ G   RL+SYNILAQAYVKSS+FPHSP+PCLKWKAR   +L VLRS +ADILCLQE+DEYD+FYK  +E + YSS+YI+RSG K DGCG+FY++NKLELV++EKIDYNDL N I +E +          S  E++ A   + +    +D GDPN+P VRLKRDCVGIM AF+LK   EH+VIV NTHIYWDP+WADVKLAQ KYLLSR+A+FK +V+DKF+  PSVL++GDFNSVPGDKVY+YL+SG P  E   E  ED+PIPL SVYAY RGEPQFTN TPGFTGTLDYIL+SPS  I P+ +L+LP+ADS D+KGGLPNYYHPSDHLPIG 
Sbjct:   10 ATATPVYPKFVPVEQKDITSVSKSDGFTFRLISYNILAQAYVKSSVFPHSPSPCLKWKARSPVILDVLRSIDADILCLQELDEYDSFYKEKIEQNDYSSIYIKRSGRKLDGCGVFYKHNKLELVIEEKIDYNDLANLILDESS----------SVEEKEKAPDTNNKVNSPRDLGDPNNPYVRLKRDCVGIMAAFKLKYPYEHYVIVTNTHIYWDPEWADVKLAQAKYLLSRVAQFKKMVADKFECTPSVLIAGDFNSVPGDKVYQYLVSGGPMSESSPECSEDIPIPLCSVYAYTRGEPQFTNYTPGFTGTLDYILYSPSEGIVPVGFLELPDADSPDLKGGLPNYYHPSDHLPIGA 357

HSP 2 Score: 153.295 bits (386), Expect = 2.548e-39
Identity = 76/126 (60.32%), Postives = 94/126 (74.60%), Query Frame = 0
 
Query:  378 KFLFSDQQQAERILPIINNISSKNG--VYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGADFVI 501
            K + +D+ +    + I  + +S  G  VY+YL+SG P  E   E  ED+PIPL SVYAY RGEPQFTN TPGFTGTLDYIL+SPS  I P+ +L+LP+ADS D+KGGLPNYYHPSDHLPIGA+F +
Sbjct:  236 KKMVADKFECTPSVLIAGDFNSVPGDKVYQYLVSGGPMSESSPECSEDIPIPLCSVYAYTRGEPQFTNYTPGFTGTLDYILYSPSEGIVPVGFLELPDADSPDLKGGLPNYYHPSDHLPIGAEFTV 361
[Close]
BLAST of DCAR_030950 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A1WCR0 (Endo/exonuclease/phosphatase domain-containing protein {ECO:0000259|Pfam:PF03372})

HSP 1 Score: 480.33 bits (1235), Expect = 1.076e-165
Identity = 233/366 (63.66%), Postives = 282/366 (77.05%), Query Frame = 0
 
Query:    1 MSATTGPVIRKFIPVE------HSQTHGSKLRLVSYNILAQAYVKSSLFPHSPAPCLKWKARCQELLTVLRSFEADILCLQEVDEYDTFYKGNVESHGYSSVYIQRSGTKRDGCGIFYRNNKLELVMQEKIDYNDLVNSIQE------EEALCAGMDKITVSDTERDTASKEDLQPKDTKDRGDPNDPRVRLKRDCVGIMTAFRLKESSEHFVIVANTHIYWDPKWADVKLAQVKYLLSRLAKFKTLVSDKFDSEPSVLLSGDFNSVPGDKVYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGT 354
            M     P+ R+FI VE       S+  G K RLVSYNILAQ YVKSSLFPHSP+PCL+WKAR Q +L+VL++F AD LCLQEVDEYD+FY+GN+ESHGYSS+Y+QR+G KRDGCGIFY+ N  ELV +EKI+YNDLVNSIQ+      E+ L  G +     + E   ASK        ++ G+PNDPRVRLKRDCV IM AF+LK+   H V+VANTH+YWDP+WADVKLAQ KYLLSRLA+FK LVS++ +  PS++++GDFNS PGDKVY+YL+SGN S  P +E  ED+PIPL SVYA+++GEP FTNCTPGFTGTLDYI FSP+ SI P+S+L+LPE DS DV GGLPNY HPSDHLPIG 
Sbjct:   25 MGTAPSPMHREFISVEGRDIYSRSRPDGIKFRLVSYNILAQVYVKSSLFPHSPSPCLRWKARSQAILSVLKNFGADFLCLQEVDEYDSFYQGNMESHGYSSIYVQRTGQKRDGCGIFYKQNSAELVFEEKIEYNDLVNSIQDGDDDKHEDMLTNGSN-----EAEPKNASK-----NVPEEHGNPNDPRVRLKRDCVAIMGAFKLKDPPHHVVVVANTHLYWDPEWADVKLAQAKYLLSRLAQFKALVSNRLECTPSIIVTGDFNSTPGDKVYQYLVSGNSSFAPLVECLEDVPIPLCSVYAFIKGEPPFTNCTPGFTGTLDYIFFSPTDSIRPVSFLELPEPDSLDVVGGLPNYSHPSDHLPIGA 380

HSP 2 Score: 154.836 bits (390), Expect = 1.227e-39
Identity = 78/134 (58.21%), Postives = 100/134 (74.63%), Query Frame = 0
 
Query:  372 VLRQLPKF--LFSDQQQAERILPIINNISSKNG--VYEYLISGNPSMEPQLEQREDLPIPLDSVYAYLRGEPQFTNCTPGFTGTLDYILFSPSGSINPISYLDLPEADSSDVKGGLPNYYHPSDHLPIGADFVI 501
            +L +L +F  L S++ +    + +  + +S  G  VY+YL+SGN S  P +E  ED+PIPL SVYA+++GEP FTNCTPGFTGTLDYI FSP+ SI P+S+L+LPE DS DV GGLPNY HPSDHLPIGA+F I
Sbjct:  251 LLSRLAQFKALVSNRLECTPSIIVTGDFNSTPGDKVYQYLVSGNSSFAPLVECLEDVPIPLCSVYAFIKGEPPFTNCTPGFTGTLDYIFFSPTDSIRPVSFLELPEPDSLDVVGGLPNYSHPSDHLPIGAEFEI 384
Match NameStatsDescription
A0A6I9TC70E-Value: 1.479e-175, PID: 67.04(carbon catabolite repressor protein 4 homolog 4-l... [more]
A0A2G9H7V6E-Value: 2.246e-175, PID: 67.04(Glucose-repressible alcohol dehydrogenase transcr... [more]
A0A6I9TM96E-Value: 5.134e-175, PID: 67.04(carbon catabolite repressor protein 4 homolog 4-l... [more]
A0A5B7C3M4E-Value: 9.217e-175, PID: 67.22Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A5A7Q424E-Value: 5.435e-169, PID: 65.75(Glucose-repressible alcohol dehydrogenasetranscri... [more]
D7TFE7E-Value: 1.057e-168, PID: 66.20Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A830BHQ7E-Value: 1.534e-168, PID: 65.01(Carbon catabolite repressor protein 4 homolog 4 {... [more]
A0A022RB43E-Value: 6.091e-167, PID: 65.29Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A5N6L9H7E-Value: 8.038e-166, PID: 65.08Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6A1WCR0E-Value: 1.076e-165, PID: 63.66Endo/exonuclease/phosphatase domain-containing pro... [more]

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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.