DCAR_027542

Resource Type: 
Polypeptide
Name: 
DCAR_027542
Identifier: 
DCAR_027542.mRNA-protein
Sequence: 
MRSQEFTTMTSLHGIRQIRTGWADGPEFVTQCPIRPGGSYKYRFTVQGQE
GTLWWHAHSEWWDANPIDVIREATRTGGAPNVSDAYTINGQPGDLYNCSS
KETVIVPVDSGETNLLRVINSALNQQLFFSIANHKMTVVGADASYVKPFT
TNTLMLGPGQTTDVLITGDQIPARYYIAARAYASAQNAPFDNTTTTAILE
YKSAPCPAKGASIRPVLPSLPAFNDTATATAFSTSFRSPGKVEVPKEIDE
SLFFTVGLGLNRCPSGAMSSTCQAPNGTRFTASMNNVSFVLPSSFSLLEA
HHQGIPGVFTTDFPAAPPVKFDYTGNVSSSLWQPTRGTKVYRLEYGSKVQ
VVLQGTSIVTAENHPIHLHGYDFYVIAEGFGNFNPETDTSKFNLDDPPLR
VWIMHCHLDVHISWGLAMAFLVDNGVGELESLEHAPEDLPLC*
Sequence Length: 
443
Sequence Checksum: 
8ccaf5babcdb55df3f242163bba4353e
View location in JBrowse: 
DCARv2_Chr8:22011447..22013916+
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_027542, derives from mRNA, DCAR_027542.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_027542 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
[Close]
BLAST of DCAR_027542 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7T4I6 (Laccase {ECO:0000256|ARBA:ARBA00012297, ECO:0000256|RuleBase:RU361119} (1.10.3.2 {ECO:0000256|ARBA:ARBA00012297, ECO:0000256|RuleBase:RU361119}) (Benzenediol:oxygen oxidoreductase {ECO:0000256|RuleBase:RU361119}) (Diphenol oxidase {ECO:0000256|RuleBase:RU361119}) (Urishiol oxidase {ECO:0000256|RuleBase:RU361119}))

HSP 1 Score: 755.747 bits (1950), Expect = 0.000e+0
Identity = 370/487 (75.98%), Postives = 395/487 (81.11%), Query Frame = 0
 
Query:   13 HGIRQIRTGWADGPEFVTQCPIRPGGSYKYRFTVQGQEGTLWWHAHS-----------------------------------EWWDANPIDVIREATRTGGAPNVSDAYTINGQPGDLYNCSSKETVIVPVDSGETNLLRVINSALNQQLFFSIANHKMTVVGADASYVKPFTTNTLMLGPGQTTDVLITGDQIPARYYIAARAYASAQNAPFDNTTTTAILEYKSAPCPAK-GASIRPVLPSLPAFNDTATATAFSTSFRSPGKVEVPKEIDESLFFTVGLGLNRCPSGAMSSTCQAPNGTRFTASMNNVSFVLPSSFSLLEAHHQGIPGVFTTDFPAAPPVKFDYTGNVSSSLWQPTRGTKVYRLEYGSKVQVVLQGTSIVTAENHPIHLHGYDFYVIAEGFGNFNPETDTSKFNLDDPPLR---------------------VWIMHCHLDVHISWGLAMAFLVDNGVGELESLEHAPEDLPLC 442
            HGIRQ+RTGWADGPEFVTQCPIRPGGSY YRFTVQGQEGTLWWHAHS                                   EWWDANPIDV+R+ATRTG APNVSDAYTINGQPGDLYNCSSK+TVIVP+DSGETNLLRVINS LNQ+LFF++ANHK TVV ADASY KPFTT+ +MLGPGQTTDVLITGDQ PARYY+AARAY SAQ APFDNTTTTAILEYKSAPCPAK G S  PV PSLPAFNDTAT TAFS SFRSP KVEVP +IDESLFFTVGLGLNRCP    SS CQ PNGTRFTASMNNVSFVLPS+FSLL+AH QGIPGVFTTD+PAAPPVKFDYTGNVS SLWQP  GTK+Y+L+YGS+VQVVLQGTSI TAENHPIHLHGYDFY+IAEGFGNFNP TDTSKFNL DPPLR                     VW+MHCHLDVHI+WGLAMAFLV+NGVG L+S+E  P DLPLC
Sbjct:   91 HGIRQMRTGWADGPEFVTQCPIRPGGSYTYRFTVQGQEGTLWWHAHSSWLRATVYGALIIHPKPGSSYPFTKPKRETPILLGEWWDANPIDVVRQATRTGAAPNVSDAYTINGQPGDLYNCSSKDTVIVPIDSGETNLLRVINSGLNQELFFTVANHKFTVVSADASYTKPFTTSVIMLGPGQTTDVLITGDQPPARYYMAARAYQSAQGAPFDNTTTTAILEYKSAPCPAKKGVSTTPVFPSLPAFNDTATVTAFSKSFRSPAKVEVPTDIDESLFFTVGLGLNRCPPKFKSSQCQGPNGTRFTASMNNVSFVLPSNFSLLQAHQQGIPGVFTTDYPAAPPVKFDYTGNVSRSLWQPVPGTKLYKLKYGSRVQVVLQGTSIFTAENHPIHLHGYDFYIIAEGFGNFNPSTDTSKFNLVDPPLRNTVAVPVNGWAVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVENGVGALQSIETPPADLPLC 577
[Close]
BLAST of DCAR_027542 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3Z8C4 (Laccase {ECO:0000256|ARBA:ARBA00012297, ECO:0000256|RuleBase:RU361119} (1.10.3.2 {ECO:0000256|ARBA:ARBA00012297, ECO:0000256|RuleBase:RU361119}) (Benzenediol:oxygen oxidoreductase {ECO:0000256|RuleBase:RU361119}) (Diphenol oxidase {ECO:0000256|RuleBase:RU361119}) (Urishiol oxidase {ECO:0000256|RuleBase:RU361119}))

HSP 1 Score: 751.125 bits (1938), Expect = 0.000e+0
Identity = 359/494 (72.67%), Postives = 399/494 (80.77%), Query Frame = 0
 
Query:    5 EFTTMTSLHGIRQIRTGWADGPEFVTQCPIRPGGSYKYRFTVQGQEGTLWWHAHS-----------------------------------EWWDANPIDVIREATRTGGAPNVSDAYTINGQPGDLYNCSSKETVIVPVDSGETNLLRVINSALNQQLFFSIANHKMTVVGADASYVKPFTTNTLMLGPGQTTDVLITGDQIPARYYIAARAYASAQNAPFDNTTTTAILEYKSAPCPAKGASIRPVLPSLPAFNDTATATAFSTSFRSPGKVEVPKEIDESLFFTVGLGLNRCPSGAMSSTCQAPNGTRFTASMNNVSFVLPSSFSLLEAHHQGIPGVFTTDFPAAPPVKFDYTGNVSSSLWQPTRGTKVYRLEYGSKVQVVLQGTSIVTAENHPIHLHGYDFYVIAEGFGNFNPETDTSKFNLDDPPLR---------------------VWIMHCHLDVHISWGLAMAFLVDNGVGELESLEHAPEDLPLC 442
            ++      HG+RQ+RT WADGPEF+TQCPIRPGGSY YRFT+QGQEGTLWWHAHS                                   EWWDANPIDVIR+ATRTG APNVSDAYTINGQPGDLY CSS++T+IV VDSGETNLLRVIN+ LNQQLFF++ANHK TVVGADASYVKPFTT+ +MLGPGQTTDVLIT +Q PARYY+AARAYASAQ APFDNTTTTAILEYK+APCPAKG  I PVLPSLPAFNDTA+AT F++SFRS  KVEVP EIDE+LFFTVGLGLN CP+GA SS+CQ PNGTRFTASMNNVSFVLPS+FSLL+AHHQGIPGVF+TDFPA PPVKFDYTGNVS SLWQP   TK+Y+L YG++VQ+VLQGTSI TAENHPIHLHGYDFY++AEGFGNFNP+TDT+KFNL DPPLR                     VWIMHCHLDVHI+WGLAMAFLV+NGV ELE+LE  P DLP+C
Sbjct:   85 QYNVTIHWHGVRQMRTAWADGPEFITQCPIRPGGSYTYRFTIQGQEGTLWWHAHSSWLRATVYGALVIHPKEGTSYPFPKPKRETPILLGEWWDANPIDVIRQATRTGAAPNVSDAYTINGQPGDLYKCSSQDTMIVHVDSGETNLLRVINAGLNQQLFFTVANHKFTVVGADASYVKPFTTSVIMLGPGQTTDVLITANQPPARYYMAARAYASAQGAPFDNTTTTAILEYKAAPCPAKGVKINPVLPSLPAFNDTASATTFTSSFRSARKVEVPTEIDENLFFTVGLGLNNCPAGASSSSCQGPNGTRFTASMNNVSFVLPSNFSLLQAHHQGIPGVFSTDFPAVPPVKFDYTGNVSRSLWQPISATKLYKLRYGARVQIVLQGTSIFTAENHPIHLHGYDFYILAEGFGNFNPQTDTAKFNLVDPPLRNTASVPVNGWSVIRFVADNPGVWIMHCHLDVHITWGLAMAFLVENGVTELEALEEPPVDLPVC 578
[Close]
BLAST of DCAR_027542 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q7HN82 (Laccase {ECO:0000256|ARBA:ARBA00012297, ECO:0000256|RuleBase:RU361119} (1.10.3.2 {ECO:0000256|ARBA:ARBA00012297, ECO:0000256|RuleBase:RU361119}) (Benzenediol:oxygen oxidoreductase {ECO:0000256|RuleBase:RU361119}) (Diphenol oxidase {ECO:0000256|RuleBase:RU361119}) (Urishiol oxidase {ECO:0000256|RuleBase:RU361119}))

HSP 1 Score: 748.814 bits (1932), Expect = 0.000e+0
Identity = 356/494 (72.06%), Postives = 399/494 (80.77%), Query Frame = 0
 
Query:    5 EFTTMTSLHGIRQIRTGWADGPEFVTQCPIRPGGSYKYRFTVQGQEGTLWWHAHS-----------------------------------EWWDANPIDVIREATRTGGAPNVSDAYTINGQPGDLYNCSSKETVIVPVDSGETNLLRVINSALNQQLFFSIANHKMTVVGADASYVKPFTTNTLMLGPGQTTDVLITGDQIPARYYIAARAYASAQNAPFDNTTTTAILEYKSAPCPAKGASIRPVLPSLPAFNDTATATAFSTSFRSPGKVEVPKEIDESLFFTVGLGLNRCPSGAMSSTCQAPNGTRFTASMNNVSFVLPSSFSLLEAHHQGIPGVFTTDFPAAPPVKFDYTGNVSSSLWQPTRGTKVYRLEYGSKVQVVLQGTSIVTAENHPIHLHGYDFYVIAEGFGNFNPETDTSKFNLDDPPLR---------------------VWIMHCHLDVHISWGLAMAFLVDNGVGELESLEHAPEDLPLC 442
            ++      HG+RQ+RT WADGPEF+TQCPIRPGGSY YRFT+QGQEGTLWWHAHS                                   EWWDANPIDVIR+ATRTG APN SDAYTINGQPGDLY CS+++T IV VDSGETNLLRVINS LNQQLFF++ANHK+TVVGADASYVKPFTT+ LMLGPG+TTDVLIT +Q PARYY+AARAYASAQ APFDNTTTTAILEYK+APCPAKG  I P  PSLPAFNDTATATAF++SFRS  KVEVP EIDE+LFFTVGLGLN CP+GA SS+CQ PNG RFTASMNNVSFVLPS+FSLL+AHHQGIPGVF+TDFP++PPVKFDYTGNVS SLWQP   TKVY+L+YG++VQ+VLQGTSIVTAENHPIHLHGYDFY++AEGFGNFNP+TDTSKFNL DPPLR                     +W+MHCHLDVHI+WGLAMAFLV+NGV ELE++E  P DLP+C
Sbjct:   74 QYNVTIHWHGVRQMRTAWADGPEFITQCPIRPGGSYTYRFTIQGQEGTLWWHAHSSWLRATAYGALVIHPKEGTTYPFPKPKRQTPILLGEWWDANPIDVIRQATRTGAAPNSSDAYTINGQPGDLYKCSNQDTTIVHVDSGETNLLRVINSGLNQQLFFTVANHKLTVVGADASYVKPFTTSVLMLGPGETTDVLITANQPPARYYMAARAYASAQGAPFDNTTTTAILEYKAAPCPAKGVKINPAFPSLPAFNDTATATAFTSSFRSASKVEVPTEIDENLFFTVGLGLNNCPAGASSSSCQGPNGMRFTASMNNVSFVLPSNFSLLQAHHQGIPGVFSTDFPSSPPVKFDYTGNVSRSLWQPISATKVYKLKYGARVQIVLQGTSIVTAENHPIHLHGYDFYILAEGFGNFNPQTDTSKFNLVDPPLRNTASVPVNGWSVIRFVADNPGIWLMHCHLDVHITWGLAMAFLVENGVTELEAIEEPPVDLPVC 567
[Close]
BLAST of DCAR_027542 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1C7N6 (Laccase {ECO:0000256|ARBA:ARBA00012297, ECO:0000256|RuleBase:RU361119} (1.10.3.2 {ECO:0000256|ARBA:ARBA00012297, ECO:0000256|RuleBase:RU361119}) (Benzenediol:oxygen oxidoreductase {ECO:0000256|RuleBase:RU361119}) (Diphenol oxidase {ECO:0000256|RuleBase:RU361119}) (Urishiol oxidase {ECO:0000256|RuleBase:RU361119}))

HSP 1 Score: 747.658 bits (1929), Expect = 0.000e+0
Identity = 357/494 (72.27%), Postives = 397/494 (80.36%), Query Frame = 0
 
Query:    5 EFTTMTSLHGIRQIRTGWADGPEFVTQCPIRPGGSYKYRFTVQGQEGTLWWHAHS-----------------------------------EWWDANPIDVIREATRTGGAPNVSDAYTINGQPGDLYNCSSKETVIVPVDSGETNLLRVINSALNQQLFFSIANHKMTVVGADASYVKPFTTNTLMLGPGQTTDVLITGDQIPARYYIAARAYASAQNAPFDNTTTTAILEYKSAPCPAKGASIRPVLPSLPAFNDTATATAFSTSFRSPGKVEVPKEIDESLFFTVGLGLNRCPSGAMSSTCQAPNGTRFTASMNNVSFVLPSSFSLLEAHHQGIPGVFTTDFPAAPPVKFDYTGNVSSSLWQPTRGTKVYRLEYGSKVQVVLQGTSIVTAENHPIHLHGYDFYVIAEGFGNFNPETDTSKFNLDDPPLR---------------------VWIMHCHLDVHISWGLAMAFLVDNGVGELESLEHAPEDLPLC 442
            ++      HG+RQ+RT WADGPEF+TQCPIRPGGSY YRFT+QGQEGTLWWHAHS                                   EWWDANPIDVIR+ATRTG APN SDAYTINGQPGDLY CS+++T IV VDSGETNLLRVINS LNQQLFFS+ANHK TVVGADASYVKPFTT+ LMLGPGQTTDVLIT +Q PARYY+AARAYASAQ APFDNTTTTAILEYK+APCPAKG  I P  PSLPAFNDTATATAF++SFRS  KV+VP EIDE LFFTVGLGLN CP+GA SS+CQ PNGTRFTASMNNVSFVLPS+FSLL+AHHQGIPGVF+TDFP++PPVKFDYTGNVS +LWQP   TKVY+L YG++VQ+VLQGTSIVTAENHPIHLHGYDFY++AEGFGNFNP+TDTSKFNL DPPLR                     +W+MHCHLDVHI+WGLAMAFLV+NGV ELE++E  P DLP+C
Sbjct:   74 QYNVTIHWHGVRQMRTAWADGPEFITQCPIRPGGSYTYRFTIQGQEGTLWWHAHSSWLRATVYGALVIHPKEGTAYPFPKPKRQTPILLGEWWDANPIDVIRQATRTGAAPNASDAYTINGQPGDLYKCSNQDTTIVHVDSGETNLLRVINSGLNQQLFFSVANHKFTVVGADASYVKPFTTSVLMLGPGQTTDVLITANQPPARYYMAARAYASAQGAPFDNTTTTAILEYKAAPCPAKGVKINPAFPSLPAFNDTATATAFTSSFRSARKVQVPTEIDEDLFFTVGLGLNNCPAGASSSSCQGPNGTRFTASMNNVSFVLPSNFSLLQAHHQGIPGVFSTDFPSSPPVKFDYTGNVSRTLWQPLSATKVYKLSYGARVQIVLQGTSIVTAENHPIHLHGYDFYILAEGFGNFNPQTDTSKFNLVDPPLRNTASVPVNGWSVIRFVADNPGIWLMHCHLDVHITWGLAMAFLVENGVTELEAVEEPPVDLPVC 567
[Close]
BLAST of DCAR_027542 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6N2B214 (Laccase {ECO:0000256|ARBA:ARBA00012297, ECO:0000256|RuleBase:RU361119} (1.10.3.2 {ECO:0000256|ARBA:ARBA00012297, ECO:0000256|RuleBase:RU361119}) (Benzenediol:oxygen oxidoreductase {ECO:0000256|RuleBase:RU361119}) (Diphenol oxidase {ECO:0000256|RuleBase:RU361119}) (Urishiol oxidase {ECO:0000256|RuleBase:RU361119}))

HSP 1 Score: 745.732 bits (1924), Expect = 0.000e+0
Identity = 355/494 (71.86%), Postives = 398/494 (80.57%), Query Frame = 0
 
Query:    5 EFTTMTSLHGIRQIRTGWADGPEFVTQCPIRPGGSYKYRFTVQGQEGTLWWHAHS-----------------------------------EWWDANPIDVIREATRTGGAPNVSDAYTINGQPGDLYNCSSKETVIVPVDSGETNLLRVINSALNQQLFFSIANHKMTVVGADASYVKPFTTNTLMLGPGQTTDVLITGDQIPARYYIAARAYASAQNAPFDNTTTTAILEYKSAPCPAKGASIRPVLPSLPAFNDTATATAFSTSFRSPGKVEVPKEIDESLFFTVGLGLNRCPSGAMSSTCQAPNGTRFTASMNNVSFVLPSSFSLLEAHHQGIPGVFTTDFPAAPPVKFDYTGNVSSSLWQPTRGTKVYRLEYGSKVQVVLQGTSIVTAENHPIHLHGYDFYVIAEGFGNFNPETDTSKFNLDDPPLR---------------------VWIMHCHLDVHISWGLAMAFLVDNGVGELESLEHAPEDLPLC 442
            ++      HG+RQ+RT WADGPEF+TQCPIRPG SY YRFT+QGQEGTLWWHAHS                                   EWWDANPIDVIR+ATRTG  PN SDAYTINGQPGDLY CS+++T IV VDSGETNLLRVINS LNQQLFF++ANHK+TVVGADASYVKPFTT+ LMLGPGQTTDVLIT +Q PARYY+AARAYASAQ APFDNTTTTAILEYK+APCPAKG  + P  PSLPAFNDTATATAF++SFRS  KVEVP EIDE+LFFTVGLGLN CP+GA SS+CQ PNGTRFTASMNNVSFVLPS+FSLL+AHHQGIPGVF+TDFP++PPVKFDYTGNVS SLWQP   TKVY+L+YG++VQ+VLQGTSIVTAENHPIHLHGYDFY++AEGFGNFNP+TDTSKFNL DPPLR                     +WIMHCHLDVHI+WGLAMAFLV++GV ELE++E  P DLP+C
Sbjct:   74 QYNVTIHWHGVRQMRTAWADGPEFITQCPIRPGRSYTYRFTIQGQEGTLWWHAHSSWLRATVYGALVIHPKEGTTYPFPKPKRQTPILLGEWWDANPIDVIRQATRTGATPNSSDAYTINGQPGDLYKCSNQDTTIVHVDSGETNLLRVINSGLNQQLFFTVANHKLTVVGADASYVKPFTTSVLMLGPGQTTDVLITANQPPARYYMAARAYASAQGAPFDNTTTTAILEYKAAPCPAKGVKVNPAFPSLPAFNDTATATAFTSSFRSASKVEVPTEIDENLFFTVGLGLNNCPAGASSSSCQGPNGTRFTASMNNVSFVLPSNFSLLQAHHQGIPGVFSTDFPSSPPVKFDYTGNVSRSLWQPISATKVYKLKYGARVQIVLQGTSIVTAENHPIHLHGYDFYILAEGFGNFNPQTDTSKFNLVDPPLRNTASVPVNGWSVIRFVADNPGIWIMHCHLDVHITWGLAMAFLVEDGVTELEAIEEPPVDLPVC 567
[Close]
BLAST of DCAR_027542 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068UZI7 (Laccase {ECO:0000256|ARBA:ARBA00012297, ECO:0000256|RuleBase:RU361119} (1.10.3.2 {ECO:0000256|ARBA:ARBA00012297, ECO:0000256|RuleBase:RU361119}) (Benzenediol:oxygen oxidoreductase {ECO:0000256|RuleBase:RU361119}) (Diphenol oxidase {ECO:0000256|RuleBase:RU361119}) (Urishiol oxidase {ECO:0000256|RuleBase:RU361119}))

HSP 1 Score: 744.577 bits (1921), Expect = 0.000e+0
Identity = 358/498 (71.89%), Postives = 395/498 (79.32%), Query Frame = 0
 
Query:    1 MRSQEFTTMTSLHGIRQIRTGWADGPEFVTQCPIRPGGSYKYRFTVQGQEGTLWWHAHS-----------------------------------EWWDANPIDVIREATRTGGAPNVSDAYTINGQPGDLYNCSSKETVIVPVDSGETNLLRVINSALNQQLFFSIANHKMTVVGADASYVKPFTTNTLMLGPGQTTDVLITGDQIPARYYIAARAYASAQNAPFDNTTTTAILEYKSAPCPAKGASIRPVLPSLPAFNDTATATAFSTSFRSPGKVEVPKEIDESLFFTVGLGLNRCPSGAMSSTCQAPNGTRFTASMNNVSFVLPSSFSLLEAHHQGIPGVFTTDFPAAPPVKFDYTGNVSSSLWQPTRGTKVYRLEYGSKVQVVLQGTSIVTAENHPIHLHGYDFYVIAEGFGNFNPETDTSKFNLDDPPLR---------------------VWIMHCHLDVHISWGLAMAFLVDNGVGELESLEHAPEDLPLC 442
            +   ++      HG+RQ+RT W+DGPEFVTQCPIRPGGSY YRFT+QGQEGTLWWHAHS                                   EWWDANP+DV+REATRTG  PNVSDA+TINGQPGDL  CSS  T IVPVDSGETNL+RV+NS LNQQLF +IANHK+TVVGADASYVKPFTT+ LMLGPGQTTDVLIT DQ PARYYIAARAYASAQ APFDNTTTTAILEYK+APCPAKG SI+P+LPSLPAFNDTATATAFS SFRSP KV VP +IDESLFFTVGLGL  CP GA S  CQ PNGTRFTASMNNVSFVLPSSFSLL++H QGIPGVFTTDFPAAPPV+FDYTGNVS SLWQP R TKVY+L+YG++VQ+VLQGTSI TAENHPIHLHGYDFY+IAEGFGNFNP+TDT+KFNL DPPLR                     VW++HCHLDVHI+WGLAMAF+V++G G LE LE AP DLP+C
Sbjct:   74 INKAQYNLTIHWHGVRQMRTAWSDGPEFVTQCPIRPGGSYTYRFTIQGQEGTLWWHAHSSWLRATVYGGLIIRPKEGDSYPFPKPKRESLLLLGEWWDANPMDVVREATRTGATPNVSDAFTINGQPGDLLKCSSNGTTIVPVDSGETNLIRVVNSGLNQQLFLTIANHKLTVVGADASYVKPFTTSVLMLGPGQTTDVLITTDQPPARYYIAARAYASAQGAPFDNTTTTAILEYKTAPCPAKGVSIKPILPSLPAFNDTATATAFSKSFRSPRKVPVPTDIDESLFFTVGLGLQNCPPGASSQNCQGPNGTRFTASMNNVSFVLPSSFSLLQSHQQGIPGVFTTDFPAAPPVQFDYTGNVSRSLWQPVRATKVYKLKYGARVQLVLQGTSIFTAENHPIHLHGYDFYLIAEGFGNFNPKTDTAKFNLVDPPLRNTASVPVQGWSVIRFVADNPGVWLLHCHLDVHITWGLAMAFIVEDGAGLLEKLEEAPADLPVC 571
[Close]
BLAST of DCAR_027542 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6W9H5 (Laccase {ECO:0000256|ARBA:ARBA00012297, ECO:0000256|RuleBase:RU361119} (1.10.3.2 {ECO:0000256|ARBA:ARBA00012297, ECO:0000256|RuleBase:RU361119}) (Benzenediol:oxygen oxidoreductase {ECO:0000256|RuleBase:RU361119}) (Diphenol oxidase {ECO:0000256|RuleBase:RU361119}) (Urishiol oxidase {ECO:0000256|RuleBase:RU361119}))

HSP 1 Score: 743.806 bits (1919), Expect = 0.000e+0
Identity = 357/498 (71.69%), Postives = 394/498 (79.12%), Query Frame = 0
 
Query:    1 MRSQEFTTMTSLHGIRQIRTGWADGPEFVTQCPIRPGGSYKYRFTVQGQEGTLWWHAHS-----------------------------------EWWDANPIDVIREATRTGGAPNVSDAYTINGQPGDLYNCSSKETVIVPVDSGETNLLRVINSALNQQLFFSIANHKMTVVGADASYVKPFTTNTLMLGPGQTTDVLITGDQIPARYYIAARAYASAQNAPFDNTTTTAILEYKSAPCPAKGASIRPVLPSLPAFNDTATATAFSTSFRSPGKVEVPKEIDESLFFTVGLGLNRCPSGAMSSTCQAPNGTRFTASMNNVSFVLPSSFSLLEAHHQGIPGVFTTDFPAAPPVKFDYTGNVSSSLWQPTRGTKVYRLEYGSKVQVVLQGTSIVTAENHPIHLHGYDFYVIAEGFGNFNPETDTSKFNLDDPPLR---------------------VWIMHCHLDVHISWGLAMAFLVDNGVGELESLEHAPEDLPLC 442
            +   ++      HG+RQ+RT W+DGPEFVTQCPIRPGGSY YRFT+QGQEGTLWWHAHS                                   EWWDANP+DV+REATRTG  PNVSDA+TINGQPGDL  CSS  T IVPVDSGETNL+RV+NS LNQQLF +IANHK+TVVGADASYVKPFTT+ LMLGPGQTTDVLIT DQ PARYYIAARAYASAQ APFDNTTTTAILEYK+APCPAKG SI+P+LPSLPAFNDTATATAF  SFRSP KV VP +IDESLFFTVGLGL  CP GA S  CQ PNGTRFTASMNNVSFVLPSSFSLL++H QGIPGVFTTDFPAAPPV+FDYTGNVS SLWQP R TKVY+L+YG++VQ+VLQGTSI TAENHPIHLHGYDFY+IAEGFGNFNP+TDT+KFNL DPPLR                     VW++HCHLDVHI+WGLAMAF+V++G G LE LE AP DLP+C
Sbjct:   74 INKAQYNLTIHWHGVRQMRTAWSDGPEFVTQCPIRPGGSYTYRFTIQGQEGTLWWHAHSSWLRATVYGGLIIRPKEGDSYPFPKPKRESLLLLGEWWDANPMDVVREATRTGATPNVSDAFTINGQPGDLLKCSSNGTTIVPVDSGETNLIRVVNSGLNQQLFLTIANHKLTVVGADASYVKPFTTSVLMLGPGQTTDVLITTDQPPARYYIAARAYASAQGAPFDNTTTTAILEYKTAPCPAKGVSIKPILPSLPAFNDTATATAFGKSFRSPRKVPVPTDIDESLFFTVGLGLQNCPPGASSQNCQGPNGTRFTASMNNVSFVLPSSFSLLQSHQQGIPGVFTTDFPAAPPVQFDYTGNVSRSLWQPVRATKVYKLKYGARVQLVLQGTSIFTAENHPIHLHGYDFYIIAEGFGNFNPKTDTAKFNLVDPPLRNTASVPVQGWSVIRFVADNPGVWLLHCHLDVHITWGLAMAFIVEDGAGLLEKLEEAPADLPVC 571
[Close]
BLAST of DCAR_027542 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8H3C1 (Laccase {ECO:0000256|ARBA:ARBA00012297, ECO:0000256|RuleBase:RU361119} (1.10.3.2 {ECO:0000256|ARBA:ARBA00012297, ECO:0000256|RuleBase:RU361119}) (Benzenediol:oxygen oxidoreductase {ECO:0000256|RuleBase:RU361119}) (Diphenol oxidase {ECO:0000256|RuleBase:RU361119}) (Urishiol oxidase {ECO:0000256|RuleBase:RU361119}))

HSP 1 Score: 742.265 bits (1915), Expect = 0.000e+0
Identity = 355/486 (73.05%), Postives = 393/486 (80.86%), Query Frame = 0
 
Query:   13 HGIRQIRTGWADGPEFVTQCPIRPGGSYKYRFTVQGQEGTLWWHAHS-----------------------------------EWWDANPIDVIREATRTGGAPNVSDAYTINGQPGDLYNCSSKETVIVPVDSGETNLLRVINSALNQQLFFSIANHKMTVVGADASYVKPFTTNTLMLGPGQTTDVLITGDQIPARYYIAARAYASAQNAPFDNTTTTAILEYKSAPCPAKGASIRPVLPSLPAFNDTATATAFSTSFRSPGKVEVPKEIDESLFFTVGLGLNRCPSGAMSSTCQAPNGTRFTASMNNVSFVLPSSFSLLEAHHQGIPGVFTTDFPAAPPVKFDYTGNVSSSLWQPTRGTKVYRLEYGSKVQVVLQGTSIVTAENHPIHLHGYDFYVIAEGFGNFNPETDTSKFNLDDPPLR---------------------VWIMHCHLDVHISWGLAMAFLVDNGVGELESLEHAPEDLPLC 442
            HG+RQ+RT WADGPEF+TQCPI+PGGSY YRFT+QGQEGTLWWHAHS                                   EWWDANPIDVIR+ATRTG APNVS+AYTINGQPGDLY CSS++T IV VDSGETNLLRVIN+ LNQQLFF++ANHK TVVGADASY KPFTT+ LMLGPGQTTDVLIT +Q PARYY+AARAYASAQ  PFDNTTTTAILEYK+APCPAKG  I P  PSLPAFNDTATATAF++SFRS  KVEVP EIDE+LFFTVGLGLN CP+GA SS+CQ PNGTRFTASMNNVSFVLPS+FSLL+AH QGIPGVF+TDFP+ PPVKFDYTGNVS SLWQP   TK+Y+L+YG++VQ+VLQGTSI TAENHPIHLHGYDFY++AEGFGNFNP+TDTSKFNL DPPLR                     VWIMHCHLDVHI+WGLAMAFLV+NGV ELE+LE  P DLP+C
Sbjct:   82 HGVRQMRTAWADGPEFITQCPIKPGGSYTYRFTIQGQEGTLWWHAHSSWLRATVYGALVIHPKEGTSYPFPKPKRETPILLGEWWDANPIDVIRQATRTGAAPNVSNAYTINGQPGDLYKCSSQDTTIVHVDSGETNLLRVINAGLNQQLFFTVANHKFTVVGADASYAKPFTTSVLMLGPGQTTDVLITANQPPARYYMAARAYASAQGVPFDNTTTTAILEYKAAPCPAKGVKINPTFPSLPAFNDTATATAFTSSFRSARKVEVPTEIDENLFFTVGLGLNNCPAGASSSSCQGPNGTRFTASMNNVSFVLPSNFSLLQAHQQGIPGVFSTDFPSVPPVKFDYTGNVSRSLWQPISATKLYKLKYGARVQIVLQGTSIFTAENHPIHLHGYDFYILAEGFGNFNPQTDTSKFNLVDPPLRNTASVPVNGWSVIRFVADNPGVWIMHCHLDVHITWGLAMAFLVENGVTELEALEEPPVDLPVC 567
[Close]
BLAST of DCAR_027542 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3C6M8 (Laccase {ECO:0000256|ARBA:ARBA00012297, ECO:0000256|RuleBase:RU361119} (1.10.3.2 {ECO:0000256|ARBA:ARBA00012297, ECO:0000256|RuleBase:RU361119}) (Benzenediol:oxygen oxidoreductase {ECO:0000256|RuleBase:RU361119}) (Diphenol oxidase {ECO:0000256|RuleBase:RU361119}) (Urishiol oxidase {ECO:0000256|RuleBase:RU361119}))

HSP 1 Score: 740.339 bits (1910), Expect = 0.000e+0
Identity = 355/486 (73.05%), Postives = 392/486 (80.66%), Query Frame = 0
 
Query:   13 HGIRQIRTGWADGPEFVTQCPIRPGGSYKYRFTVQGQEGTLWWHAHS-----------------------------------EWWDANPIDVIREATRTGGAPNVSDAYTINGQPGDLYNCSSKETVIVPVDSGETNLLRVINSALNQQLFFSIANHKMTVVGADASYVKPFTTNTLMLGPGQTTDVLITGDQIPARYYIAARAYASAQNAPFDNTTTTAILEYKSAPCPAKGASIRPVLPSLPAFNDTATATAFSTSFRSPGKVEVPKEIDESLFFTVGLGLNRCPSGAMSSTCQAPNGTRFTASMNNVSFVLPSSFSLLEAHHQGIPGVFTTDFPAAPPVKFDYTGNVSSSLWQPTRGTKVYRLEYGSKVQVVLQGTSIVTAENHPIHLHGYDFYVIAEGFGNFNPETDTSKFNLDDPPLR---------------------VWIMHCHLDVHISWGLAMAFLVDNGVGELESLEHAPEDLPLC 442
            HG+RQ+RT WADGPEF+TQCPI+PGGSY YRFT+QGQEGTLWWHAHS                                   EWWDANPIDVIR+ATRTG APNVS+AYTINGQPGDLY CSS++T IV VDSGETNLLRVIN+ LNQQLFF++ANHK TVVGADASY KPFTT+ LMLGPGQTTDVLIT +Q PARYY+AARAYASAQ  PFDNTTTTAILEYK+APCPAKG  I P  PSLPAFNDTATATAF++SFRS  KVEVP EIDE+LFFTVGLGLN CP+GA SS+CQ PNGTRFTASMNNVSFVLPS+FSLL+AH QGIPGVF+TDFP+ PPVKFDYTGNVS SLWQP   TK+Y+L+YG+ VQ+VLQGTSI TAENHPIHLHGYDFY++AEGFGNFNP+TDTSKFNL DPPLR                     VWIMHCHLDVHI+WGLAMAFLV+NGV ELE+LE  P DLP+C
Sbjct:   82 HGVRQMRTAWADGPEFITQCPIKPGGSYTYRFTIQGQEGTLWWHAHSSWLRATVYGALVIHPKEGTSYPFPKPKRETPILLGEWWDANPIDVIRQATRTGAAPNVSNAYTINGQPGDLYKCSSQDTTIVHVDSGETNLLRVINAGLNQQLFFTVANHKFTVVGADASYAKPFTTSVLMLGPGQTTDVLITANQPPARYYMAARAYASAQGVPFDNTTTTAILEYKAAPCPAKGVKINPTFPSLPAFNDTATATAFTSSFRSARKVEVPTEIDENLFFTVGLGLNNCPAGASSSSCQGPNGTRFTASMNNVSFVLPSNFSLLQAHQQGIPGVFSTDFPSVPPVKFDYTGNVSRSLWQPISATKLYKLKYGAGVQIVLQGTSIFTAENHPIHLHGYDFYILAEGFGNFNPQTDTSKFNLVDPPLRNTASVPVNGWSVIRFVADNPGVWIMHCHLDVHITWGLAMAFLVENGVTELEALEEPPVDLPVC 567
[Close]
BLAST of DCAR_027542 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G2WIT9 (Laccase {ECO:0000256|ARBA:ARBA00012297, ECO:0000256|RuleBase:RU361119} (1.10.3.2 {ECO:0000256|ARBA:ARBA00012297, ECO:0000256|RuleBase:RU361119}) (Benzenediol:oxygen oxidoreductase {ECO:0000256|RuleBase:RU361119}) (Diphenol oxidase {ECO:0000256|RuleBase:RU361119}) (Urishiol oxidase {ECO:0000256|RuleBase:RU361119}))

HSP 1 Score: 739.954 bits (1909), Expect = 0.000e+0
Identity = 354/486 (72.84%), Postives = 392/486 (80.66%), Query Frame = 0
 
Query:   13 HGIRQIRTGWADGPEFVTQCPIRPGGSYKYRFTVQGQEGTLWWHAHS-----------------------------------EWWDANPIDVIREATRTGGAPNVSDAYTINGQPGDLYNCSSKETVIVPVDSGETNLLRVINSALNQQLFFSIANHKMTVVGADASYVKPFTTNTLMLGPGQTTDVLITGDQIPARYYIAARAYASAQNAPFDNTTTTAILEYKSAPCPAKGASIRPVLPSLPAFNDTATATAFSTSFRSPGKVEVPKEIDESLFFTVGLGLNRCPSGAMSSTCQAPNGTRFTASMNNVSFVLPSSFSLLEAHHQGIPGVFTTDFPAAPPVKFDYTGNVSSSLWQPTRGTKVYRLEYGSKVQVVLQGTSIVTAENHPIHLHGYDFYVIAEGFGNFNPETDTSKFNLDDPPLR---------------------VWIMHCHLDVHISWGLAMAFLVDNGVGELESLEHAPEDLPLC 442
            HG+RQ+RT WADGPEF+TQCPI+PGGSY YRFT+QGQEGTLWWHAHS                                   EWWDANPIDVIR+ATRTG APNVS+AYTINGQPGDLY CSS++T IV VDSGETNLLRVIN+ LNQQLFF++ANHK TVVGADASY KPFTT+ LMLGPGQTTDVLIT +Q PARYY+AARAYASAQ  PFDNTTTTAILEYK+APCPAKG  I P  PSLPAFNDTATATAF++SFRS  KVEVP E DE+LFFTVGLGLN CP+GA SS+CQ PNGTRFTASMNNVSFVLPS+FSLL+AH QGIPGVF+TDFP+ PPVKFDYTGNVS SLWQP   TK+Y+L+YG++VQ+VLQGTSI TAENHPIHLHGYDFY++AEGFGNFNP+TDTSKFNL DPPLR                     VWIMHCHLDVHI+WGLAMAFLV+NGV ELE+LE  P DLP+C
Sbjct:   82 HGVRQMRTAWADGPEFITQCPIKPGGSYTYRFTIQGQEGTLWWHAHSSWLRATVYGALVIHPKEGTSYPFPKPKRETPILLGEWWDANPIDVIRQATRTGAAPNVSNAYTINGQPGDLYKCSSQDTTIVHVDSGETNLLRVINAGLNQQLFFTVANHKFTVVGADASYAKPFTTSVLMLGPGQTTDVLITANQPPARYYMAARAYASAQGVPFDNTTTTAILEYKAAPCPAKGVKINPTFPSLPAFNDTATATAFTSSFRSARKVEVPTETDENLFFTVGLGLNNCPAGASSSSCQGPNGTRFTASMNNVSFVLPSNFSLLQAHQQGIPGVFSTDFPSVPPVKFDYTGNVSRSLWQPISATKLYKLKYGARVQIVLQGTSIFTAENHPIHLHGYDFYILAEGFGNFNPQTDTSKFNLVDPPLRNTASVPVNGWSVIRFVADNPGVWIMHCHLDVHITWGLAMAFLVENGVTELEALEEPPVDLPVC 567
Match NameStatsDescription
D7T4I6E-Value: 0.000e+0, PID: 75.98Laccase {ECO:0000256|ARBA:ARBA00012297, ECO:000025... [more]
A0A1S3Z8C4E-Value: 0.000e+0, PID: 72.67Laccase {ECO:0000256|ARBA:ARBA00012297, ECO:000025... [more]
A0A3Q7HN82E-Value: 0.000e+0, PID: 72.06Laccase {ECO:0000256|ARBA:ARBA00012297, ECO:000025... [more]
M1C7N6E-Value: 0.000e+0, PID: 72.27Laccase {ECO:0000256|ARBA:ARBA00012297, ECO:000025... [more]
A0A6N2B214E-Value: 0.000e+0, PID: 71.86Laccase {ECO:0000256|ARBA:ARBA00012297, ECO:000025... [more]
A0A068UZI7E-Value: 0.000e+0, PID: 71.89Laccase {ECO:0000256|ARBA:ARBA00012297, ECO:000025... [more]
A0A6P6W9H5E-Value: 0.000e+0, PID: 71.69Laccase {ECO:0000256|ARBA:ARBA00012297, ECO:000025... [more]
A0A1U8H3C1E-Value: 0.000e+0, PID: 73.05Laccase {ECO:0000256|ARBA:ARBA00012297, ECO:000025... [more]
A0A2G3C6M8E-Value: 0.000e+0, PID: 73.05Laccase {ECO:0000256|ARBA:ARBA00012297, ECO:000025... [more]
A0A2G2WIT9E-Value: 0.000e+0, PID: 72.84Laccase {ECO:0000256|ARBA:ARBA00012297, ECO:000025... [more]

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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.