Resource Type:
Polypeptide
Name:
DCAR_027696
Identifier:
DCAR_027696.mRNA-protein
Sequence:
MSRVVDENSSPDDQQDIERFDSASPTLGQLLKCVGDVRKEVTGDETPVHQ
AVDMSSAMGTEPRSVPFVLSFSNLTYSVKVRRKLTFSNLCGGGKRSVAGS
AAPAEPFATENMFSRSKTLLDNISGEARDGEVLAVLGASGSGKSTLIDAL
ANRIAKGSLKGTVSLNGEQFESRLLKVISAYVMQDDLLFPMLTVEETLMY
AAEFRLPRALSKSKKQLRVQTLIDQLGLRNAANTVIGDEGHRGVSGGERR
RVSIGTDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAKSGSIVIMSV
HQPSYRILGLLDRLLFLSRGQTVYSGSPANLPLYFSDFGVPMPENENRTE
FALDRIRELEATPGGTKSLVEFNKTWQNMKSSRRNTASYLNSPSPLHNLS
LKEAISASISRGKLVSGAVSSDVTRASMVPKFANPIWNEIAVLSRRSITN
SRRMPELFGIRVGTVMTTGFILASIFWNLDNTPKGIQERLGFFAFAMSTT
FYTCADALPVFLQERYIFMRETAYNAYRRSSYVISHAMVVFPTLIFLAAL
FATLTFWAVGLDGGLSGFLYYFLIMLASFWAGSSFVTFLSGVVPSVMLGY
TIVVAILAYFLLFSGFFITRNRIPDYWIWFHYISLIKYPFEAVLQNEFED
PNKCFVRGIQIFDNSPLGAVPDALKVKLLEGMSKTLGVPLSATTCLTTGA
DILKQQGVTDLSKWNCLFVTVAWGFLFRILFYFSLLLGSKNKRN*
Sequence Length:
745
Sequence Checksum:
e92668a4f0e80aa2bdcf0887c9aeba37
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_027696, derives from mRNA, DCAR_027696. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_027696 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_027696 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5B8E1 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})
HSP 1 Score: 1414.82 bits (3661), Expect = 0.000e+0
Identity = 705/748 (94.25%), Postives = 721/748 (96.39%), Query Frame = 0
Match: A0A6L5B8E1 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})
HSP 1 Score: 1414.82 bits (3661), Expect = 0.000e+0
Identity = 705/748 (94.25%), Postives = 721/748 (96.39%), Query Frame = 0
Query: 1 MSRVVDENSSPDDQQDIER----FDSASPTLGQLLKCVGDVRKEVTGDETPVHQAVDMSSAMGTEPRSVPFVLSFSNLTYSVKVRRKLTFSNLCGGGKRSVAGSAAPAEPFATENMFSRSKTLLDNISGEARDGEVLAVLGASGSGKSTLIDALANRIAKGSLKGTVSLNGEQFESRLLKVISAYVMQDDLLFPMLTVEETLMYAAEFRLPRALSKSKKQLRVQTLIDQLGLRNAANTVIGDEGHRGVSGGERRRVSIGTDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAKSGSIVIMSVHQPSYRILGLLDRLLFLSRGQTVYSGSPANLPLYFSDFGVPMPENENRTEFALDRIRELEATPGGTKSLVEFNKTWQNMKSSRRNTASYLNSPSPLHNLSLKEAISASISRGKLVSGAVSSDVTRASMVPKFANPIWNEIAVLSRRSITNSRRMPELFGIRVGTVMTTGFILASIFWNLDNTPKGIQERLGFFAFAMSTTFYTCADALPVFLQERYIFMRETAYNAYRRSSYVISHAMVVFPTLIFLAALFATLTFWAVGLDGGLSGFLYYFLIMLASFWAGSSFVTFLSGVVPSVMLGYTIVVAILAYFLLFSGFFITRNRIPDYWIWFHYISLIKYPFEAVLQNEFEDPNKCFVRGIQIFDNSPLGAVPDALKVKLLEGMSKTLGVPLSATTCLTTGADILKQQGVTDLSKWNCLFVTVAWGFLFRILFYFSLLLGSKNKRN 744
MSRVVDENSSP +QQDIE +SPTLGQLLKCVGDVRKEVTGD+TPVHQAVDMS M TEPR VPFVLSFSNLTYSVK+RRKLT SNLCGGGK GSA AEPFA ENMFSR+KTLLDNISGEARDGE+LAVLGASGSGKSTLIDALANRIAKGSLKGTVSLNGEQFESR+LKVISAYVMQDDLLFPMLTVEETLMYAAEFRLPRALSKSKKQLRVQTLIDQLGLRNAANTVIGDEGHRGVSGGERRRVSIGTDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAKSGSIVIMSVHQPSYRILGLLDRLLFLSRGQTVYSGSPANLPLYFSDFGVPMP+NENRTEFALDRIRELEATPGGTKSLVEFNKTWQ+MKSSRRNT SYLNSPSPLHNLSLKEAISASISRGKLVSGAVSSD++RASMVPKFANPIWNEIAVLSRRS+TNSRRMPELFGIRVGTVMTTGFILASIFWNLDNTPKGIQERLGFFAFAMSTTFYTCADALPVFLQERYIFMRETAYNAYRRSSYVISHA+VVFPTLIFLAALFATLTFWAVGLDGGLSGFLYYFLIMLASFWAGSSFVTFLSGVVPSVMLGYTIVVAILAYFLLFSGFFITRNRIPDYWIWFHYISLIKYPFEAVLQNEFEDPNKCFVRG+QIFDNSPL + DALKVKLLE MSKTLGVPL ATTCLTTGADILKQQGVTDLSKWNCLFVTVAWGFLFRILFYFSLLLGSKNKR+
Sbjct: 1 MSRVVDENSSPGEQQDIEHSGLNIAPSSPTLGQLLKCVGDVRKEVTGDDTPVHQAVDMSGPMITEPRPVPFVLSFSNLTYSVKIRRKLTISNLCGGGK--TKGSANTAEPFANENMFSRTKTLLDNISGEARDGEILAVLGASGSGKSTLIDALANRIAKGSLKGTVSLNGEQFESRMLKVISAYVMQDDLLFPMLTVEETLMYAAEFRLPRALSKSKKQLRVQTLIDQLGLRNAANTVIGDEGHRGVSGGERRRVSIGTDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAKSGSIVIMSVHQPSYRILGLLDRLLFLSRGQTVYSGSPANLPLYFSDFGVPMPDNENRTEFALDRIRELEATPGGTKSLVEFNKTWQHMKSSRRNTTSYLNSPSPLHNLSLKEAISASISRGKLVSGAVSSDMSRASMVPKFANPIWNEIAVLSRRSVTNSRRMPELFGIRVGTVMTTGFILASIFWNLDNTPKGIQERLGFFAFAMSTTFYTCADALPVFLQERYIFMRETAYNAYRRSSYVISHALVVFPTLIFLAALFATLTFWAVGLDGGLSGFLYYFLIMLASFWAGSSFVTFLSGVVPSVMLGYTIVVAILAYFLLFSGFFITRNRIPDYWIWFHYISLIKYPFEAVLQNEFEDPNKCFVRGVQIFDNSPLSSFSDALKVKLLESMSKTLGVPLDATTCLTTGADILKQQGVTDLSKWNCLFVTVAWGFLFRILFYFSLLLGSKNKRS 746
BLAST of DCAR_027696 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4F2Z2 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})
HSP 1 Score: 1199.11 bits (3101), Expect = 0.000e+0
Identity = 584/756 (77.25%), Postives = 655/756 (86.64%), Query Frame = 0
Match: A0A4S4F2Z2 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})
HSP 1 Score: 1199.11 bits (3101), Expect = 0.000e+0
Identity = 584/756 (77.25%), Postives = 655/756 (86.64%), Query Frame = 0
Query: 1 MSRVVDENSSP--------DDQQDIE----RFDSASPTLGQLLKCVGDVRKEVTGDETPVHQAVDMSSAMGTEPRSVPFVLSFSNLTYSVKVRRKLTFSNLCGGGKRSVAGSAAPAEPFATENMFSRSKTLLDNISGEARDGEVLAVLGASGSGKSTLIDALANRIAKGSLKGTVSLNGEQFESRLLKVISAYVMQDDLLFPMLTVEETLMYAAEFRLPRALSKSKKQLRVQTLIDQLGLRNAANTVIGDEGHRGVSGGERRRVSIGTDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAKSGSIVIMSVHQPSYRILGLLDRLLFLSRGQTVYSGSPANLPLYFSDFGVPMPENENRTEFALDRIRELEATPGGTKSLVEFNKTWQNMKSSRRNTASYLNSPSPLHNLSLKEAISASISRGKLVSGAVSSDVTRASMVPKFANPIWNEIAVLSRRSITNSRRMPELFGIRVGTVMTTGFILASIFWNLDNTPKGIQERLGFFAFAMSTTFYTCADALPVFLQERYIFMRETAYNAYRRSSYVISHAMVVFPTLIFLAALFATLTFWAVGLDGGLSGFLYYFLIMLASFWAGSSFVTFLSGVVPSVMLGYTIVVAILAYFLLFSGFFITRNRIPDYWIWFHYISLIKYPFEAVLQNEFEDPNKCFVRGIQIFDNSPLGAVPDALKVKLLEGMSKTLGVPLSATTCLTTGADILKQQGVTDLSKWNCLFVTVAWGFLFRILFYFSLLLGSKNKRN 744
MSRVV EN+SP Q IE ASPTLGQLLK VGDVRKEVTGDETPVHQ +D+S EPRS+PF LSF+NLTYSVK+RRKL + GG RS G AEP A EN+F ++K LL++ISG ARDGE++AVLGASGSGKSTLIDALANRIAKGSLKGTV+LNGE ESRLLKVISAYVMQDDLLFPMLTVEETLM++AEFRLPR LSKSKK++RVQ LIDQLGLRNAA T+IGDEGHRGVSGGERRRVSIG DIIHDPI+LFLDEPTSGLDSTSA+MVVKVLQRIA+SGSIVIMSVHQPSYRILGLLDRL+FLSRGQTVYSGSP NLP++F+DFG P+PE ENRTEFALD IRELE +PGGTKSLVEFNK+WQ++K SR +P H L+LKEAISASISRGKLVSGA +++ + SMVP FANP+W E+AVLS+R+ITNSRRMPELFGIR+G VM TGFILA++FW LD++PKG+QERLGFFAFAMSTTFYTCADALPVFLQERYIFMRETAYNAYRRSSYV+SH++ P L+FL+ FA LTFWAVGLDGGLSGF +YFLI+ ASFWAGSSFVTFLSGVVP VMLGYTIVVAILAYFLLFSGFFI R+RIP YWIWFHYISL+KYP+EAVLQNEF+DP KCFV+G+QIFDN+PLG VP ALK+KLL+ MS TLG+ LS+ TCLTTG DIL+QQG+TDLSKWNCL+VT+AWGF FRILFYFSLLLGSKNKR+
Sbjct: 1 MSRVVAENTSPARDRLSFFQRNQSIELSSAAVTGASPTLGQLLKSVGDVRKEVTGDETPVHQVLDLSDT-SLEPRSLPFALSFNNLTYSVKIRRKLALPSFLGG--RSNHGPPVTAEPVAGENVFRKTKVLLNDISGVARDGEIMAVLGASGSGKSTLIDALANRIAKGSLKGTVTLNGEHLESRLLKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRTLSKSKKKMRVQALIDQLGLRNAAKTIIGDEGHRGVSGGERRRVSIGIDIIHDPIILFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSVHQPSYRILGLLDRLIFLSRGQTVYSGSPMNLPVFFADFGHPIPETENRTEFALDLIRELEGSPGGTKSLVEFNKSWQSLKRSR-------APDTPTHGLTLKEAISASISRGKLVSGATNTNASPTSMVPTFANPLWVEMAVLSKRAITNSRRMPELFGIRLGAVMVTGFILATMFWRLDSSPKGVQERLGFFAFAMSTTFYTCADALPVFLQERYIFMRETAYNAYRRSSYVLSHSLTALPALVFLSMGFAALTFWAVGLDGGLSGFFFYFLIIFASFWAGSSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPPYWIWFHYISLVKYPYEAVLQNEFQDPTKCFVKGVQIFDNTPLGQVPTALKLKLLDSMSATLGMNLSSGTCLTTGTDILQQQGITDLSKWNCLWVTIAWGFFFRILFYFSLLLGSKNKRS 746
BLAST of DCAR_027696 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5E4ECT7 ((Full=PREDICTED: ABC transporter {ECO:0000313|EMBL:VVA12361.1}))
HSP 1 Score: 1177.16 bits (3044), Expect = 0.000e+0
Identity = 585/749 (78.10%), Postives = 662/749 (88.38%), Query Frame = 0
Match: A0A5E4ECT7 ((Full=PREDICTED: ABC transporter {ECO:0000313|EMBL:VVA12361.1}))
HSP 1 Score: 1177.16 bits (3044), Expect = 0.000e+0
Identity = 585/749 (78.10%), Postives = 662/749 (88.38%), Query Frame = 0
Query: 2 SRVVDENSSP----DDQQDIERF-DSASPTLGQLLKCVGDVRKEVTGD--ETPVHQAVDMSSAMGTEPRSVPFVLSFSNLTYSVKVRRKLTFSNLCGGGKRSVAGSAAPAEPFATENMFSRSKTLLDNISGEARDGEVLAVLGASGSGKSTLIDALANRIAKGSLKGTVSLNGEQFESRLLKVISAYVMQDDLLFPMLTVEETLMYAAEFRLPRALSKSKKQLRVQTLIDQLGLRNAANTVIGDEGHRGVSGGERRRVSIGTDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAKSGSIVIMSVHQPSYRILGLLDRLLFLSRGQTVYSGSPANLPLYFSDFGVPMPENENRTEFALDRIRELEATPGGTKSLVEFNKTWQNMKSSRRNTASYLNSPSPLHNLSLKEAISASISRGKLVSGAVSSDVTRASMVPKFANPIWNEIAVLSRRSITNSRRMPELFGIRVGTVMTTGFILASIFWNLDNTPKGIQERLGFFAFAMSTTFYTCADALPVFLQERYIFMRETAYNAYRRSSYVISHAMVVFPTLIFLAALFATLTFWAVGLDGGLSGFLYYFLIMLASFWAGSSFVTFLSGVVPSVMLGYTIVVAILAYFLLFSGFFITRNRIPDYWIWFHYISLIKYPFEAVLQNEFEDPNKCFVRGIQIFDNSPLGAVPDALKVKLLEGMSKTLGVPLSATTCLTTGADILKQQGVTDLSKWNCLFVTVAWGFLFRILFYFSLLLGSKNKR 743
SRV D SP + D+ R ASP+LGQLLK VGDVRK+ TGD ETP H A+D+S A EPRS+PFVLSF+NLTYSVKVRRK + S + GG RS G+A +EP E++F+R+KTLL++ISGEAR+GE+LAVLGASGSGKSTLIDALANRIAKGSLKGTVSLNGE ESRLLKVISAYVMQDDLLFPMLTVEETLM+AAEFRLPRALSKSKK+ RVQ LIDQLGLRNAA T+IGDEGHRGVSGGERRRVSIG DIIHDPI+LFLDEPTSGLDSTSA+MVVKVLQRIA+SGSIV+MSVHQPSYRILGLLDRLLFLSRGQTVYSGSP LP YF++FG P+PE+ENRTEFALD IRELE +PGGTKSLVEFN+TWQ+MK S NT+ + + P H+LSL+EAISASISRGKLVSGA ++D + SMVP FANP W E+AVLS+RS+ N+RRMPELFGIR+G VM TGFILA++FWNLDN+PKG+QERLGF AFAMSTTFYTCADALPVFLQERYIFMRETAYNAYRRSSYV+SH++V P+L+FL+ F+ LTFWAVGLDGGLSGFL+YFLI+ ASFWAGSSFVTFLSGVVP VMLGYTIVVAILAYFLLFSGFFITR+RIP YWIWFHY+SL+KYP+E VLQNEF+D KCFVRG+QIFDN+PL +VP A+K+KLLE MS+TLG ++++TCLTTG+DILKQQGVTDLSKWNCL+VTVAWGFLFRILFYFSLLLGSKNKR
Sbjct: 3 SRVADNQISPFFTTMELDDLSRASHGASPSLGQLLKHVGDVRKQATGDGGETPAHHALDLSDA-SIEPRSLPFVLSFTNLTYSVKVRRKFSLSGMFSGG-RSRLGAATESEPVGGESLFTRTKTLLNDISGEAREGEILAVLGASGSGKSTLIDALANRIAKGSLKGTVSLNGEVLESRLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRALSKSKKKARVQALIDQLGLRNAAKTIIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVVMSVHQPSYRILGLLDRLLFLSRGQTVYSGSPTTLPSYFAEFGHPIPESENRTEFALDLIRELEGSPGGTKSLVEFNRTWQSMKHSDNNTSCQI-ACEPRHSLSLQEAISASISRGKLVSGATNNDPSPNSMVPTFANPFWIEMAVLSKRSMKNARRMPELFGIRLGAVMVTGFILATMFWNLDNSPKGVQERLGFIAFAMSTTFYTCADALPVFLQERYIFMRETAYNAYRRSSYVLSHSLVALPSLVFLSIAFSALTFWAVGLDGGLSGFLFYFLIIFASFWAGSSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFITRDRIPAYWIWFHYMSLVKYPYEGVLQNEFQDATKCFVRGVQIFDNTPLASVPSAMKLKLLESMSQTLGTRITSSTCLTTGSDILKQQGVTDLSKWNCLYVTVAWGFLFRILFYFSLLLGSKNKR 748
BLAST of DCAR_027696 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P3ZG94 ((ABC transporter G family member 6-like {ECO:0000313|RefSeq:XP_015877050.1}))
HSP 1 Score: 1176.39 bits (3042), Expect = 0.000e+0
Identity = 568/725 (78.34%), Postives = 648/725 (89.38%), Query Frame = 0
Match: A0A6P3ZG94 ((ABC transporter G family member 6-like {ECO:0000313|RefSeq:XP_015877050.1}))
HSP 1 Score: 1176.39 bits (3042), Expect = 0.000e+0
Identity = 568/725 (78.34%), Postives = 648/725 (89.38%), Query Frame = 0
Query: 24 SPTLGQLLKCVGDVRKEVTGD--ETPVHQAVDMSSAMGTEPRSVPFVLSFSNLTYSVKVRRKLTFSNLCGGGKRSVAGSAAPAEPFATENMFSRSKTLLDNISGEARDGEVLAVLGASGSGKSTLIDALANRIAKGSLKGTVSLNGEQFESRLLKVISAYVMQDDLLFPMLTVEETLMYAAEFRLPRALSKSKKQLRVQTLIDQLGLRNAANTVIGDEGHRGVSGGERRRVSIGTDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAKSGSIVIMSVHQPSYRILGLLDRLLFLSRGQTVYSGSPANLPLYFSDFGVPMPENENRTEFALDRIRELEATPGGTKSLVEFNKTWQNMKSSRRNTASYLNSPSPLH--NLSLKEAISASISRGKLVSGAVSS-DVTRASMVPKFANPIWNEIAVLSRRSITNSRRMPELFGIRVGTVMTTGFILASIFWNLDNTPKGIQERLGFFAFAMSTTFYTCADALPVFLQERYIFMRETAYNAYRRSSYVISHAMVVFPTLIFLAALFATLTFWAVGLDGGLSGFLYYFLIMLASFWAGSSFVTFLSGVVPSVMLGYTIVVAILAYFLLFSGFFITRNRIPDYWIWFHYISLIKYPFEAVLQNEFEDPNKCFVRGIQIFDNSPLGAVPDALKVKLLEGMSKTLGVPLSATTCLTTGADILKQQGVTDLSKWNCLFVTVAWGFLFRILFYFSLLLGSKNKR 743
SPTLGQLLKCVGDVRKEVTGD ETPVHQ VD++ A EPRS+PFVLSF+NLTYSVK RK+ FS+L + G+A+ AEP EN+F+R+KTLL++ISGEARDGE++AV+GASGSGKSTLIDALANRIAKGSLKGT++LNGE ESRLLKVISAYVMQDDLLFPMLTVEETLM+AAEFRLPR LSKSKK++RVQ LIDQLGLRNA+ TVIGDEGHRGVSGGERRRVSIG DIIHDPILLFLDEPTSGLDSTSA+MVVKVLQRIA+SGSIVIMS+HQPSYRIL LLDR++FLSRGQTVYSGSP +LPL+F++FG P+PENENRTEFALD IR+LE +PGGTKSLVEFNK+WQ+MK + RN + N H LSLKEAISASISRGKLV GA ++ DV+ SMVP FANP W E+AVL +RS+ NSRRMPELFGIR+ V+ TGFILA++FWNLD++PKG+QERLGFFAFAMSTTFYTCADALPVFLQERY+FMRETAYNAYRRSSYV+SH++ P+L+FL+ F+ TFWAVGLDGGLSGFL+YFLI+ ASFWAGSSFVTFLSGVVP VMLGYTIVVAILAYFLLFSGFFI R+RIP YWIWFHY+SL+KYP+EAVLQNEF+DP KCFVRG+QIFDNSPL AVP A+K+KLLE MS TLG+ ++++TCLTTG+DIL+Q+GVTDLSKWNCL++TVAWGFLFRILFYFSLLLGSKNKR
Sbjct: 38 SPTLGQLLKCVGDVRKEVTGDGSETPVHQVVDLTDAT-IEPRSLPFVLSFNNLTYSVKAPRKMNFSSLFSRSHNRL-GTASVAEPVVGENLFTRTKTLLNDISGEARDGEIMAVMGASGSGKSTLIDALANRIAKGSLKGTMTLNGEAIESRLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKMRVQALIDQLGLRNASKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSIHQPSYRILSLLDRMIFLSRGQTVYSGSPTSLPLFFTEFGHPIPENENRTEFALDLIRQLEGSPGGTKSLVEFNKSWQSMKHTNRNNS---NDSVDRHGEKLSLKEAISASISRGKLVPGATNTCDVSPTSMVPTFANPFWIEMAVLFKRSMKNSRRMPELFGIRLAAVLVTGFILATMFWNLDDSPKGVQERLGFFAFAMSTTFYTCADALPVFLQERYVFMRETAYNAYRRSSYVLSHSLAALPSLVFLSLAFSATTFWAVGLDGGLSGFLFYFLIIFASFWAGSSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPGYWIWFHYLSLVKYPYEAVLQNEFDDPVKCFVRGVQIFDNSPLKAVPTAMKMKLLENMSNTLGMKITSSTCLTTGSDILQQEGVTDLSKWNCLWITVAWGFLFRILFYFSLLLGSKNKR 757
BLAST of DCAR_027696 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2N9E2S6 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})
HSP 1 Score: 1173.3 bits (3034), Expect = 0.000e+0
Identity = 568/726 (78.24%), Postives = 644/726 (88.71%), Query Frame = 0
Match: A0A2N9E2S6 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})
HSP 1 Score: 1173.3 bits (3034), Expect = 0.000e+0
Identity = 568/726 (78.24%), Postives = 644/726 (88.71%), Query Frame = 0
Query: 22 SASPTLGQLLKCVGDVRKEVTGD--ETPVHQAVDMSSA-MGTEPRSVPFVLSFSNLTYSVKVRRKLTFSNLCGGGKRSVAGSAAPAEPFATENMFSRSKTLLDNISGEARDGEVLAVLGASGSGKSTLIDALANRIAKGSLKGTVSLNGEQFESRLLKVISAYVMQDDLLFPMLTVEETLMYAAEFRLPRALSKSKKQLRVQTLIDQLGLRNAANTVIGDEGHRGVSGGERRRVSIGTDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAKSGSIVIMSVHQPSYRILGLLDRLLFLSRGQTVYSGSPANLPLYFSDFGVPMPENENRTEFALDRIRELEATPGGTKSLVEFNKTWQNMK-SSRRNTASYLNSPSPLHNLSLKEAISASISRGKLVSGAVSSDVTRASMVPKFANPIWNEIAVLSRRSITNSRRMPELFGIRVGTVMTTGFILASIFWNLDNTPKGIQERLGFFAFAMSTTFYTCADALPVFLQERYIFMRETAYNAYRRSSYVISHAMVVFPTLIFLAALFATLTFWAVGLDGGLSGFLYYFLIMLASFWAGSSFVTFLSGVVPSVMLGYTIVVAILAYFLLFSGFFITRNRIPDYWIWFHYISLIKYPFEAVLQNEFEDPNKCFVRGIQIFDNSPLGAVPDALKVKLLEGMSKTLGVPLSATTCLTTGADILKQQGVTDLSKWNCLFVTVAWGFLFRILFYFSLLLGSKNKR 743
SASPTLG LK VGDVRKE TGD ETP+H A+D+S A +G+ P +PFVLSFSNLTYSVK+RRK++ L K + AA EP EN+FS +KTLL++ISGEARDGE+LAVLGASGSGKSTLIDALANRIAKGSLKGTV+LNGE ESRLLKVISAYVMQDDLLFPMLTVEETLM+AAEFRLPR+LSKSKK++RVQ LIDQLGLRNAA T+IGDEGHRGVSGGERRRVSIG DIIHDPI+LFLDEPTSGLDSTSA+MVVKVLQRIA+SGSIVIMSVHQPSYRILGLLDRL+FLSRGQ VYSGSP NLP YF+DFG P+PE+ENRTEFALD IRELE +PGGTKSLVEFNK+WQN + SS + S + H LSLKEAI+ASISRGKLVSGA +++V +SMVP+FANP W E+AVL +RS+ NSRR PELFGIR+G VM TGFILA+IFW LDN+PKG+QER+GFFAFAMSTT+Y+CADALPVFLQ+RYIFMRETAYNAYRRSSYV+SHA+V P LIFLA F+ LTFWAVGLDGGLSG+ +YFL++LASFWAG+SFVTFLSGVVP VMLGYTIVVAILAYFLLFSGFFI RNRIPDYWIWFHYISL+KYP+EAVLQNEF DP +CFV+G+QIFDN+PLGAVPDALK+KLL+ MS TLG ++++TCLTTG D+L+QQG+TDLSKWNCL++TVAWGFLFRILFYF+LLLGSKNKR
Sbjct: 12 SASPTLGHFLKQVGDVRKEATGDGNETPMHHALDLSDASIGSRP--LPFVLSFSNLTYSVKIRRKMSLPRLLPSRKNLLG--AATGEPVVGENLFSSTKTLLNDISGEARDGEILAVLGASGSGKSTLIDALANRIAKGSLKGTVTLNGETLESRLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLSKSKKKMRVQALIDQLGLRNAAKTIIGDEGHRGVSGGERRRVSIGIDIIHDPIILFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSVHQPSYRILGLLDRLIFLSRGQPVYSGSPVNLPRYFADFGHPIPESENRTEFALDLIRELEGSPGGTKSLVEFNKSWQNKQNSSNHSEISETSDRHHQHGLSLKEAITASISRGKLVSGATNNNVNPSSMVPRFANPFWIEMAVLGKRSMMNSRRQPELFGIRLGAVMVTGFILATIFWQLDNSPKGVQERIGFFAFAMSTTYYSCADALPVFLQQRYIFMRETAYNAYRRSSYVLSHALVSLPPLIFLALAFSALTFWAVGLDGGLSGYFFYFLVILASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRNRIPDYWIWFHYISLVKYPYEAVLQNEFSDPMRCFVKGVQIFDNTPLGAVPDALKLKLLDSMSDTLGTRITSSTCLTTGTDVLQQQGITDLSKWNCLWITVAWGFLFRILFYFALLLGSKNKR 733
BLAST of DCAR_027696 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4F8Y1 ((ABC transporter G family member 6-like {ECO:0000313|RefSeq:XP_018828108.1}))
HSP 1 Score: 1173.3 bits (3034), Expect = 0.000e+0
Identity = 577/760 (75.92%), Postives = 661/760 (86.97%), Query Frame = 0
Match: A0A2I4F8Y1 ((ABC transporter G family member 6-like {ECO:0000313|RefSeq:XP_018828108.1}))
HSP 1 Score: 1173.3 bits (3034), Expect = 0.000e+0
Identity = 577/760 (75.92%), Postives = 661/760 (86.97%), Query Frame = 0
Query: 1 MSRVVDENSSPDDQ------QDIERFD------SASPTLGQLLKCVGDVRKEVTGD--ETPVHQAVDMSSAMGTEPRSVPFVLSFSNLTYSVKVRRKLTFSNLCGGGKRSVAGSAAPAEPFATENMFSRSKTLLDNISGEARDGEVLAVLGASGSGKSTLIDALANRIAKGSLKGTVSLNGEQFESRLLKVISAYVMQDDLLFPMLTVEETLMYAAEFRLPRALSKSKKQLRVQTLIDQLGLRNAANTVIGDEGHRGVSGGERRRVSIGTDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAKSGSIVIMSVHQPSYRILGLLDRLLFLSRGQTVYSGSPANLPLYFSDFGVPMPENENRTEFALDRIRELEATPGGTKSLVEFNKTWQNMK---SSRRNTASYLNSPSPLHNLSLKEAISASISRGKLVSGAVSSDVTRASMVPKFANPIWNEIAVLSRRSITNSRRMPELFGIRVGTVMTTGFILASIFWNLDNTPKGIQERLGFFAFAMSTTFYTCADALPVFLQERYIFMRETAYNAYRRSSYVISHAMVVFPTLIFLAALFATLTFWAVGLDGGLSGFLYYFLIMLASFWAGSSFVTFLSGVVPSVMLGYTIVVAILAYFLLFSGFFITRNRIPDYWIWFHYISLIKYPFEAVLQNEFEDPNKCFVRGIQIFDNSPLGAVPDALKVKLLEGMSKTLGVPLSATTCLTTGADILKQQGVTDLSKWNCLFVTVAWGFLFRILFYFSLLLGSKNKR 743
MSR+ EN SP +E D SASPTLGQLLK VGD RKE TGD ETPVHQA+D++ EPR +PFVLSFS+LTYSVKV RK+TF L +R+ G+A A+P + E +F+R+KTLL++ISGEARDGE++AVLGASGSGKSTLIDALANRIAKGSLKGTV+LNGE FESRLLKVISAYVMQDDLLFPMLTVEETLM++AEFRLPR LS+SKK++RVQ LIDQLGLRNAA T+IGDEGHRGVSGGERRRVSIG DIIHDPI+LFLDEPTSGLDSTSA+MVVKVLQRIA+SGSIVIMSVHQPSYRILGLLDRL+FLSRGQTVYSGSP NLP +F++FG P+P++ENRTEFALD IR LE +PGGTKSLVEFNK+WQNMK SS RN++S + LSLKEAISASISRGKLVSGA +DV+ +SMVP+F+NP+W E+AVL+RRS+TNSRRMPELFGIR+G VM TGFILA++FW LDN+PKG+QERLGFFAFAMSTT+YTCADALPVFLQERYIFMRETAYNAYRRSSYV+SH++V P+LI + FA TFWAVGLDGG SGFL+YFLI+LASFWAG+SFVTFLSGVVP VMLGYTIVVAILAYFLLFSGFFI R+RIP YWIWFHYISL+KYP+EAVLQNEF +P KCFV+G+QIFDN+PLG VP +LK+KLLE MS TLGV +++TTCLTTG+D+L+QQG+TDLSKWNCL++TVAWGF FRI+FYF LLLGSKNKR
Sbjct: 1 MSRIAAENLSPARHTLPTVSHVMELHDLPHANTSASPTLGQLLKHVGDARKEATGDGNETPVHQALDLTDTT-LEPRPLPFVLSFSSLTYSVKVPRKMTFRALFPR-RRNRLGAATEADPVSGERLFTRTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKGSLKGTVTLNGEAFESRLLKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRTLSRSKKKMRVQALIDQLGLRNAAKTIIGDEGHRGVSGGERRRVSIGIDIIHDPIILFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSVHQPSYRILGLLDRLIFLSRGQTVYSGSPTNLPQFFAEFGHPIPDSENRTEFALDLIRGLEGSPGGTKSLVEFNKSWQNMKQHDSSARNSSSETDR----QCLSLKEAISASISRGKLVSGA-PNDVSPSSMVPRFSNPMWTEMAVLARRSMTNSRRMPELFGIRLGAVMVTGFILATMFWQLDNSPKGVQERLGFFAFAMSTTYYTCADALPVFLQERYIFMRETAYNAYRRSSYVLSHSLVSLPSLILFSLAFAATTFWAVGLDGGFSGFLFYFLIILASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPSYWIWFHYISLVKYPYEAVLQNEFSNPTKCFVKGVQIFDNTPLGTVPTSLKLKLLESMSDTLGVQITSTTCLTTGSDLLQQQGITDLSKWNCLWITVAWGFFFRIVFYFCLLLGSKNKR 753
BLAST of DCAR_027696 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M5XNY0 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})
HSP 1 Score: 1173.3 bits (3034), Expect = 0.000e+0
Identity = 584/749 (77.97%), Postives = 659/749 (87.98%), Query Frame = 0
Match: M5XNY0 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})
HSP 1 Score: 1173.3 bits (3034), Expect = 0.000e+0
Identity = 584/749 (77.97%), Postives = 659/749 (87.98%), Query Frame = 0
Query: 2 SRVVDENSSP----DDQQDIERF-DSASPTLGQLLKCVGDVRKEVTGD--ETPVHQAVDMSSAMGTEPRSVPFVLSFSNLTYSVKVRRKLTFSNLCGGGKRSVAGSAAPAEPFATENMFSRSKTLLDNISGEARDGEVLAVLGASGSGKSTLIDALANRIAKGSLKGTVSLNGEQFESRLLKVISAYVMQDDLLFPMLTVEETLMYAAEFRLPRALSKSKKQLRVQTLIDQLGLRNAANTVIGDEGHRGVSGGERRRVSIGTDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAKSGSIVIMSVHQPSYRILGLLDRLLFLSRGQTVYSGSPANLPLYFSDFGVPMPENENRTEFALDRIRELEATPGGTKSLVEFNKTWQNMKSSRRNTASYLNSPSPLHNLSLKEAISASISRGKLVSGAVSSDVTRASMVPKFANPIWNEIAVLSRRSITNSRRMPELFGIRVGTVMTTGFILASIFWNLDNTPKGIQERLGFFAFAMSTTFYTCADALPVFLQERYIFMRETAYNAYRRSSYVISHAMVVFPTLIFLAALFATLTFWAVGLDGGLSGFLYYFLIMLASFWAGSSFVTFLSGVVPSVMLGYTIVVAILAYFLLFSGFFITRNRIPDYWIWFHYISLIKYPFEAVLQNEFEDPNKCFVRGIQIFDNSPLGAVPDALKVKLLEGMSKTLGVPLSATTCLTTGADILKQQGVTDLSKWNCLFVTVAWGFLFRILFYFSLLLGSKNKR 743
SRV D SP + D+ R ASP+LGQLLK VGDVRKE TGD ETP H A+D+S EPRS+PFVLSF+NLTYSVKVRRK + S + GG RS G+A +EP E++F+R+KTLL++ISGEAR+GE+LAVLGASGSGKSTLIDALANRIAKGSLKGTVSLNGE ESRLLKVISAYVMQDDLLFPMLTVEETLM+AAEFRLPR LSKSKK+ RVQ LIDQLGLRNAA T+IGDEGHRGVSGGERRRVSIG DIIHDPI+LFLDEPTSGLDSTSA+MVVKVLQRIA+SGSIV+MSVHQPSYRILGLLDRLLFLSRGQTVYSGSP LP YF++FG P+PE+ENRTEFALD IRELE +PGGTKSLVEFN+TWQ+MK S NT+ + + P H++SL+EAISASISRGKLVSGA ++D + SMVP FANP W E+AVLS+RS+ N+RRMPELFGIR+G VM TGFILA+IFWNLDN+PKG+QERLGF AFAMSTTFYTCADALPVFLQERYIFMRETAYNAYRRSSYV+SH++V P+L+FL+ F+ LTFWAVGLDGGLSGFL+YFLI+ ASFWAGSSFVTFLSGVVP VMLGYTIVVAILAYFLLFSGFFITR+RIP YWIWFHY+SL+KYP+E VLQNEF+D KCFVRG+QIFDN+PL +VP A+K+KLLE MS+TLG ++++TCLTTG DILKQQGVTDLSKWNCL+VTVAWGFLFRILFYFSLLLGSKNKR
Sbjct: 3 SRVADNQISPFFTTMELDDLSRASHGASPSLGQLLKHVGDVRKEATGDGGETPAHHALDLSDD-SIEPRSLPFVLSFTNLTYSVKVRRKFSLSGMFSGG-RSRLGAATESEPVGGESLFTRTKTLLNDISGEAREGEILAVLGASGSGKSTLIDALANRIAKGSLKGTVSLNGEVLESRLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKARVQALIDQLGLRNAAKTIIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVVMSVHQPSYRILGLLDRLLFLSRGQTVYSGSPTTLPSYFAEFGHPIPESENRTEFALDLIRELEGSPGGTKSLVEFNRTWQSMKHSDNNTSCQI-ACEPRHSVSLQEAISASISRGKLVSGATNNDPSPNSMVPTFANPFWIEMAVLSKRSMKNARRMPELFGIRLGAVMVTGFILATIFWNLDNSPKGVQERLGFIAFAMSTTFYTCADALPVFLQERYIFMRETAYNAYRRSSYVLSHSLVALPSLVFLSIAFSALTFWAVGLDGGLSGFLFYFLIIFASFWAGSSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFITRDRIPAYWIWFHYMSLVKYPYEGVLQNEFQDATKCFVRGVQIFDNTPLASVPSAMKLKLLESMSQTLGTRITSSTCLTTGTDILKQQGVTDLSKWNCLYVTVAWGFLFRILFYFSLLLGSKNKR 748
BLAST of DCAR_027696 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VRK4 ((ABC transporter G family member 6-like {ECO:0000313|RefSeq:XP_027104567.1}))
HSP 1 Score: 1170.61 bits (3027), Expect = 0.000e+0
Identity = 569/754 (75.46%), Postives = 645/754 (85.54%), Query Frame = 0
Match: A0A6P6VRK4 ((ABC transporter G family member 6-like {ECO:0000313|RefSeq:XP_027104567.1}))
HSP 1 Score: 1170.61 bits (3027), Expect = 0.000e+0
Identity = 569/754 (75.46%), Postives = 645/754 (85.54%), Query Frame = 0
Query: 1 MSRVVDENSSP--------DDQQDIERFD---SASPTLGQLLKCVGDVRKEVTGDETPVHQAVDMSSAMGTEPRSVPFVLSFSNLTYSVKVRRKLTFSNLCGGGKRSVAGSAAPAEPFATENMFSRSKTLLDNISGEARDGEVLAVLGASGSGKSTLIDALANRIAKGSLKGTVSLNGEQFESRLLKVISAYVMQDDLLFPMLTVEETLMYAAEFRLPRALSKSKKQLRVQTLIDQLGLRNAANTVIGDEGHRGVSGGERRRVSIGTDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAKSGSIVIMSVHQPSYRILGLLDRLLFLSRGQTVYSGSPANLPLYFSDFGVPMPENENRTEFALDRIRELEATPGGTKSLVEFNKTWQNMKSSRRNTASYLNSPSPLHNLSLKEAISASISRGKLVSGAVSSDVTRASMVPKFANPIWNEIAVLSRRSITNSRRMPELFGIRVGTVMTTGFILASIFWNLDNTPKGIQERLGFFAFAMSTTFYTCADALPVFLQERYIFMRETAYNAYRRSSYVISHAMVVFPTLIFLAALFATLTFWAVGLDGGLSGFLYYFLIMLASFWAGSSFVTFLSGVVPSVMLGYTIVVAILAYFLLFSGFFITRNRIPDYWIWFHYISLIKYPFEAVLQNEFEDPNKCFVRGIQIFDNSPLGAVPDALKVKLLEGMSKTLGVPLSATTCLTTGADILKQQGVTDLSKWNCLFVTVAWGFLFRILFYFSLLLGSKNKR 743
MS++V EN SP D +Q ++ S SPTLGQLLK VGD RKE TGDETPVHQ +D+S G EPRS+PFVLSF+NLTYSVK+ RK+ + + + + EP E +F+++K LL++ISGEARDGE++AVLGASGSGKSTLIDALANRIAK SLKGT++LNGEQ ESRLLKVISAYVMQDDLL+PMLTVEETLM+AAEFRLPR LSKSKKQ+RVQ LIDQLGLRNAA TVIGDEGHRGVSGGERRRVSIG DIIHDPI+LFLDEPTSGLDSTSA+MVVKVLQRIA+SGSIVIMS+HQPSYRILGLLDRL+FLSRG TVYSG P NLP +F+DFG P+PENENRTEFALD IRELE +PGGT+SLVEFN+TWQNMK + SP H LSLKEAISASISRGKLVSGA ++D + SMVP++ANP W E+AVLS+RS TNSRRMPELFGIR G VM TGFILA++FW LDN+PKGIQERLGFFAFAMSTTFYTCADALPVFLQERYIFMRETA+NAYRR SY +SHA+V P LIFL+ FA +TFW+VGLDGG SGF +YF I+LASFWAG+SFVTFLSGVVP VMLGYTIVVAILAYFLLFSGFFI R+RIP YWIWFHYISL+KYP+EAVLQNEF+DP KCFVRGIQIFD++PLGAVPD+LK+KLL MS TLGV ++++TC+TTG DILKQQGVTDL+KW CL++T+AWGF FRILFYFSLLLGSKNKR
Sbjct: 6 MSKIVAENISPIRDCMPTSDRRQTVQMTAAGASPSPTLGQLLKRVGDARKEATGDETPVHQVLDLSDP-GMEPRSLPFVLSFTNLTYSVKISRKMGLPAIFSRSRHHLPATTTATEPTDGETLFAKTKVLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKESLKGTITLNGEQLESRLLKVISAYVMQDDLLYPMLTVEETLMFAAEFRLPRTLSKSKKQMRVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPIILFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRLIFLSRGHTVYSGPPTNLPQFFADFGHPIPENENRTEFALDLIRELEGSPGGTRSLVEFNRTWQNMKRGTNPAGTGNVVSSPTHGLSLKEAISASISRGKLVSGATNTDASPTSMVPRYANPFWIEMAVLSKRSFTNSRRMPELFGIRCGAVMVTGFILATMFWRLDNSPKGIQERLGFFAFAMSTTFYTCADALPVFLQERYIFMRETAHNAYRRISYCLSHALVSLPALIFLSFAFAAITFWSVGLDGGTSGFFFYFAIILASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPPYWIWFHYISLVKYPYEAVLQNEFDDPAKCFVRGIQIFDSTPLGAVPDSLKIKLLASMSNTLGVKITSSTCVTTGVDILKQQGVTDLTKWACLWITIAWGFFFRILFYFSLLLGSKNKR 758
BLAST of DCAR_027696 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J5WRV6 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})
HSP 1 Score: 1170.22 bits (3026), Expect = 0.000e+0
Identity = 582/750 (77.60%), Postives = 661/750 (88.13%), Query Frame = 0
Match: A0A6J5WRV6 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})
HSP 1 Score: 1170.22 bits (3026), Expect = 0.000e+0
Identity = 582/750 (77.60%), Postives = 661/750 (88.13%), Query Frame = 0
Query: 2 SRVVDENSSP----DDQQDIERF-DSASPTLGQLLKCVGDVRKEVTGD--ETPVHQAVDMSSAMGTEPRSVPFVLSFSNLTYSVKVRRKLTFSNL-CGGGKRSVAGSAAPAEPFATENMFSRSKTLLDNISGEARDGEVLAVLGASGSGKSTLIDALANRIAKGSLKGTVSLNGEQFESRLLKVISAYVMQDDLLFPMLTVEETLMYAAEFRLPRALSKSKKQLRVQTLIDQLGLRNAANTVIGDEGHRGVSGGERRRVSIGTDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAKSGSIVIMSVHQPSYRILGLLDRLLFLSRGQTVYSGSPANLPLYFSDFGVPMPENENRTEFALDRIRELEATPGGTKSLVEFNKTWQNMKSSRRNTASYLNSPSPLHNLSLKEAISASISRGKLVSGAVSSDVTRASMVPKFANPIWNEIAVLSRRSITNSRRMPELFGIRVGTVMTTGFILASIFWNLDNTPKGIQERLGFFAFAMSTTFYTCADALPVFLQERYIFMRETAYNAYRRSSYVISHAMVVFPTLIFLAALFATLTFWAVGLDGGLSGFLYYFLIMLASFWAGSSFVTFLSGVVPSVMLGYTIVVAILAYFLLFSGFFITRNRIPDYWIWFHYISLIKYPFEAVLQNEFEDPNKCFVRGIQIFDNSPLGAVPDALKVKLLEGMSKTLGVPLSATTCLTTGADILKQQGVTDLSKWNCLFVTVAWGFLFRILFYFSLLLGSKNKR 743
SRV D SP + D+ R ASP+LGQLLK VGDVRKE TGD ETP H A+D+S + PRS+PFVLSF+NLTYSVKVRRK + S + CG +RS G+A +EP E++F+R+KTLL++ISGEAR+GE+LAVLGASGSGKSTLIDALANRIAKGSLKGTVSLNGE ESRLLKVISAYVMQDDLLFPMLTVEETLM+AAEFRLPRALSKSKK+ RVQ LIDQLGLRNAA T+IGDEGHRGVSGGERRRVSIG DIIHDPI+LFLDEPTSGLDSTSA+MVVKVLQRIA+SGSIV+MSVHQPSYRILGLLDRLLFLSRGQTVYSGSP LP YF++FG P+PE++NRTEFALD IRELE +PGGTKSLVEFN+TWQ+MK S +T+ + + P H LSL+EAISASISRGKLVSGA ++D + SMVP FANP W E+AVLS+RS+ N+RRMPELFGIR+G VM TGFILA++FWNLDNTPKG+QERLGF AFAMSTTFYTCADALPVFLQERYIFMRETAYNAYRRSSYV+SH++V P+L+FL+ F+ LTFWAVGLDGGLSGFL+YFLI+ ASFWAGSSFVTFLSGVVP VMLGYTIVVAILAYFLLFSGFFITR+RIP YWIWFHY+SL+KYP+E VLQNEF+DP KCFVRG+QIFDN+PL +VP A+K+KLL+ MS+TLG + ++TCLTTG+DIL+QQGVTDLSKWNCL+VTVAWGFLFRILFYFSLLLGSKNKR
Sbjct: 3 SRVADNQISPFFTTMELDDLSRASHGASPSLGQLLKHVGDVRKEATGDGGETPAHHALDLSDS-SIAPRSLPFVLSFTNLTYSVKVRRKFSLSGMFCG--ERSRLGAATESEPVGGESLFTRTKTLLNDISGEAREGEILAVLGASGSGKSTLIDALANRIAKGSLKGTVSLNGEVLESRLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRALSKSKKKARVQALIDQLGLRNAAKTIIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVVMSVHQPSYRILGLLDRLLFLSRGQTVYSGSPTTLPSYFAEFGHPIPESDNRTEFALDLIRELEGSPGGTKSLVEFNRTWQSMKHSNNDTSCQI-ACEPRHALSLQEAISASISRGKLVSGATNNDPSPNSMVPTFANPFWIEMAVLSKRSMKNARRMPELFGIRLGAVMVTGFILATMFWNLDNTPKGVQERLGFIAFAMSTTFYTCADALPVFLQERYIFMRETAYNAYRRSSYVLSHSLVALPSLVFLSIAFSALTFWAVGLDGGLSGFLFYFLIIFASFWAGSSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFITRDRIPGYWIWFHYMSLVKYPYEGVLQNEFQDPTKCFVRGVQIFDNTPLASVPAAMKLKLLDSMSQTLGTRIRSSTCLTTGSDILQQQGVTDLSKWNCLYVTVAWGFLFRILFYFSLLLGSKNKR 748
BLAST of DCAR_027696 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6QFA6 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})
HSP 1 Score: 1170.22 bits (3026), Expect = 0.000e+0
Identity = 570/757 (75.30%), Postives = 653/757 (86.26%), Query Frame = 0
Match: A0A5N6QFA6 (ABC transporter domain-containing protein {ECO:0000259|PROSITE:PS50893})
HSP 1 Score: 1170.22 bits (3026), Expect = 0.000e+0
Identity = 570/757 (75.30%), Postives = 653/757 (86.26%), Query Frame = 0
Query: 1 MSRVVDENSSPDDQ-----QDIERFD-------SASPTLGQLLKCVGDVRKEVTGD--ETPVHQAVDMSSAMGTEPRSVPFVLSFSNLTYSVKVRRKLTFSNLCGGGKRSVAGSAAPAEPFATENMFSRSKTLLDNISGEARDGEVLAVLGASGSGKSTLIDALANRIAKGSLKGTVSLNGEQFESRLLKVISAYVMQDDLLFPMLTVEETLMYAAEFRLPRALSKSKKQLRVQTLIDQLGLRNAANTVIGDEGHRGVSGGERRRVSIGTDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAKSGSIVIMSVHQPSYRILGLLDRLLFLSRGQTVYSGSPANLPLYFSDFGVPMPENENRTEFALDRIRELEATPGGTKSLVEFNKTWQNMKSSRRNTASYLNSPSPLHNLSLKEAISASISRGKLVSGAVSSDVTRASMVPKFANPIWNEIAVLSRRSITNSRRMPELFGIRVGTVMTTGFILASIFWNLDNTPKGIQERLGFFAFAMSTTFYTCADALPVFLQERYIFMRETAYNAYRRSSYVISHAMVVFPTLIFLAALFATLTFWAVGLDGGLSGFLYYFLIMLASFWAGSSFVTFLSGVVPSVMLGYTIVVAILAYFLLFSGFFITRNRIPDYWIWFHYISLIKYPFEAVLQNEFEDPNKCFVRGIQIFDNSPLGAVPDALKVKLLEGMSKTLGVPLSATTCLTTGADILKQQGVTDLSKWNCLFVTVAWGFLFRILFYFSLLLGSKNKR 743
MSR+ EN SP +E D SASPTLG+LLK VGD RKE TGD ETPVHQ VD++ A EPR +PFVLSFSNLTYSVKVRRK+ F + +R+ G+A A P A E++F+ +KTLL++ISGEARDGE++AVLGASGSGKSTLIDALANRIAKGSLKGTV+LNGE ESRLLKVISAYVMQDDLLFPMLTVEETLM++AEFRLPR LS+SKK++RVQ LIDQLGLRNAA T+IGDEGHRGVSGGERRRVSIG DIIHDPI+LFLDEPTSGLDSTSA+MVVKVLQRIA+SGSIVIMSVHQPSYRILGLLD L+FLSRGQTVYSGSP +LPL+F++FG P+P+ ENRTEFALD IRELE +PGG+KSLVEFNK+WQ+MK S S P H LSLKEAISASISRGKLVSGA ++ +++SMVP+FANP+W E+AVL++RS+TN+RR PELFGIR+G VM TGFILA++FW LDN+PKG QERLGFFAFAMSTT+Y+CADALPVFLQ+RYIF+RETAYNAYRRSSYV+SHA+V P L+FL+ FA TFWAVGLDGG+SGFL+Y L + ASFWAG+SFVTFLSGVVP VMLGYTIVVAILAYFLLFSGFFI RNRIP YW+WFHYISL+KYPFEAVLQNEF DPNKCFV+G+QIFDNSPLGAVP ALK+KLL+ MS TLGV ++A+TCLTTG D+L+QQG+TDLSKWNCL++TVAWGF FRILFYF L+LGSKNKR
Sbjct: 1 MSRIAAENFSPARGTLGIFSHMELGDISSSADTSASPTLGELLKRVGDARKEATGDGNETPVHQVVDLTDAT-LEPRPLPFVLSFSNLTYSVKVRRKMNFPAIFSR-ERNRLGAATTASPEAGESLFTTTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRIAKGSLKGTVTLNGEVLESRLLKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRTLSRSKKKMRVQALIDQLGLRNAAKTIIGDEGHRGVSGGERRRVSIGIDIIHDPIILFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSVHQPSYRILGLLDHLIFLSRGQTVYSGSPTSLPLFFAEFGHPIPDGENRTEFALDHIRELEGSPGGSKSLVEFNKSWQSMKQSNNPGRSSETDTEP-HGLSLKEAISASISRGKLVSGATNTATSQSSMVPRFANPLWIEMAVLAKRSVTNTRRTPELFGIRLGAVMVTGFILATVFWQLDNSPKGAQERLGFFAFAMSTTYYSCADALPVFLQQRYIFIRETAYNAYRRSSYVLSHALVSLPPLVFLSVAFACTTFWAVGLDGGVSGFLFYLLTIFASFWAGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRNRIPSYWLWFHYISLVKYPFEAVLQNEFSDPNKCFVKGVQIFDNSPLGAVPTALKLKLLDNMSDTLGVKITASTCLTTGTDVLQQQGITDLSKWNCLWITVAWGFFFRILFYFCLMLGSKNKR 754
| Match Name | Stats | Description |
|---|---|---|
| A0A6L5B8E1 | E-Value: 0.000e+0, PID: 94.25 | ABC transporter domain-containing protein {ECO:000... [more] |
| A0A4S4F2Z2 | E-Value: 0.000e+0, PID: 77.25 | ABC transporter domain-containing protein {ECO:000... [more] |
| A0A5E4ECT7 | E-Value: 0.000e+0, PID: 78.10 | (Full=PREDICTED: ABC transporter {ECO:0000313|EMBL... [more] |
| A0A6P3ZG94 | E-Value: 0.000e+0, PID: 78.34 | (ABC transporter G family member 6-like {ECO:00003... [more] |
| A0A2N9E2S6 | E-Value: 0.000e+0, PID: 78.24 | ABC transporter domain-containing protein {ECO:000... [more] |
| A0A2I4F8Y1 | E-Value: 0.000e+0, PID: 75.92 | (ABC transporter G family member 6-like {ECO:00003... [more] |
| M5XNY0 | E-Value: 0.000e+0, PID: 77.97 | ABC transporter domain-containing protein {ECO:000... [more] |
| A0A6P6VRK4 | E-Value: 0.000e+0, PID: 75.46 | (ABC transporter G family member 6-like {ECO:00003... [more] |
| A0A6J5WRV6 | E-Value: 0.000e+0, PID: 77.60 | ABC transporter domain-containing protein {ECO:000... [more] |
| A0A5N6QFA6 | E-Value: 0.000e+0, PID: 75.30 | ABC transporter domain-containing protein {ECO:000... [more] |
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An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |