Resource Type:
Polypeptide
Name:
DCAR_027641
Identifier:
DCAR_027641.mRNA-protein
Sequence:
MGGAVITTLSMDSHLCTLLSMDSSLSSHEEIERELNRAINVSSPPDINLP
LSAEPSPPPPSWNDACDILDVSHAPQHYEAETHINLTKVGKKCAKRLDSV
WGAWFFFNFYFKPALNEKSKSKIAVRDTNGVSGYDKTDLKLDVFLVQHDM
ENMYMWVFKDRPDNALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRM
QRKHYRGLSNPQCVHGIEVVPSPNFAGLDEGECKKWMELTGRDLNFSIPL
EASDFSSWRTLPVTELEIERLPPLKNNVNQQPKRLLNGCGLKLSTQQPNH
VNGEGMDLLANCNKRPKNYFAPENDYDCTLANNSSHSDGVVDAHSIEPHW
VNEFTGVMRSTYGPVTAAKTIYEDDKGFLIIVSLPCADLQRVKVTWRNTP
SHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFVREITLPARI
PEDAKLEAYGDETGTMLEIEVPKHRVGPEEHEVHVCLRPSPWREQRAYVD
LTEALV*
Sequence Length:
507
Sequence Checksum:
ec582f25861f45cec7be2f22e56727b2
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_027641, derives from mRNA, DCAR_027641. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_027641 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_027641 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AQ44 ((Uncharacterized protein {ECO:0000313|EMBL:MPA58689.1}))
HSP 1 Score: 827.395 bits (2136), Expect = 0.000e+0
Identity = 407/509 (79.96%), Postives = 443/509 (87.03%), Query Frame = 0
Match: A0A5B7AQ44 ((Uncharacterized protein {ECO:0000313|EMBL:MPA58689.1}))
HSP 1 Score: 827.395 bits (2136), Expect = 0.000e+0
Identity = 407/509 (79.96%), Postives = 443/509 (87.03%), Query Frame = 0
Query: 1 MGGAVITTLSM-DSHLCTLLSMDSSLSSHEEIERELNRAINVSSPPDINLPLSAEPSPPPPSWNDACDILDVSHAPQHYEAETHINLTKVGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKSKIAVRDTNGVSGYDKTDLKLDVFLVQHDMENMYMWVFKDRPDNALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNFAGLDEGECKKWMELTGRDLNFSIPLEASDFSSWRTLPVTELEIER-LPPLK-NNVNQQPKRLLNGCGLKLSTQQPNHVNGEGMDLLANCNKRPKNYFAPENDYDCTLANNSSHSDGVVDAHSIEPHWVNEFTGVMRSTYGPVTAAKTIYEDDKGFLIIVSLPCADLQRVKVTWRNTPSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFVREITLPARIPEDAKLEAYGDETGTMLEIEVPKHRVGPEEHEVHVCLRPSPWREQRAYVDLTEALV 506
MG A++TTLSM D+HL TLLSMD+S SS EE+ERELNRAI++S PPDINLPL AEPSPPPPSWND CDILDV QHYEAET+I +TK GKKC KRLDSVWGAWFFF+FYFKPAL+EKSKSK+ R++NGVSGYDK+DLKLDVFLVQHD+ENMYMWVFK+RP+NALGKMQLRSYMNGHSRQGERPFPFS DKGFVRSHRMQRK YRGLSNPQCVHGIEVV SPN GLDE E KKWMELTGRDLNF+IPLEASDF SWR L +TE E+ER PPLK NN N K+LLNG L+LSTQ +HVNG+GM+LL NKR K++F ND DC L NN++H D V+D H IEPHW+NEFTGVMRS YGPVTAAKTIYEDD+GFLIIVSLP ADL++VKVTWRNT SHGIVKISCVSTGCMPIIKRQDRTFKLTDP PEHCPPGEFVREI L RIPEDAKLEAYGDETGTMLEI VPKHRVGPEEHEV VCLRPS W + R YVDLTEALV
Sbjct: 24 MGKALLTTLSMEDNHLSTLLSMDTSSSSREEMERELNRAIHLSPPPDINLPLLAEPSPPPPSWNDTCDILDVGLGAQHYEAETNITVTKGGKKCTKRLDSVWGAWFFFSFYFKPALSEKSKSKMT-RESNGVSGYDKSDLKLDVFLVQHDLENMYMWVFKERPENALGKMQLRSYMNGHSRQGERPFPFSVDKGFVRSHRMQRKQYRGLSNPQCVHGIEVVRSPNLMGLDEEEQKKWMELTGRDLNFTIPLEASDFGSWRNLTITEFELERPTPPLKSNNSNPHSKKLLNGSSLELSTQPSDHVNGDGMNLLHVSNKRRKSFFPHGNDDDCCLPNNNAHLDRVLDIHPIEPHWLNEFTGVMRSAYGPVTAAKTIYEDDEGFLIIVSLPFADLEKVKVTWRNTLSHGIVKISCVSTGCMPIIKRQDRTFKLTDPMPEHCPPGEFVREIPLATRIPEDAKLEAYGDETGTMLEIIVPKHRVGPEEHEVRVCLRPSRWSD-RPYVDLTEALV 530
BLAST of DCAR_027641 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B866 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8539445.1}))
HSP 1 Score: 810.831 bits (2093), Expect = 0.000e+0
Identity = 399/509 (78.39%), Postives = 441/509 (86.64%), Query Frame = 0
Match: A0A5J5B866 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8539445.1}))
HSP 1 Score: 810.831 bits (2093), Expect = 0.000e+0
Identity = 399/509 (78.39%), Postives = 441/509 (86.64%), Query Frame = 0
Query: 1 MGGAVITTLSM-DSHLCTLLSMDSSLSSHEEIERELNRAINVSSPPDINLPLSAEPSPPPPSWNDACDILDVSHAPQHYEAETHINLTKVGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKSKIAVRDTNGVSGYDKTDLKLDVFLVQHDMENMYMWVFKDRPDNALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNFAGLDEGECKKWMELTGRDLNFSIPLEASDFSSWRTLPVTELEIER-LPPLKNN-VNQQPKRLLNGCGLKLSTQQPNHVNGEGMDLLANCNKRPKNYFAPENDYDCTLANNSSHSDGVVDAHSIEPHWVNEFTGVMRSTYGPVTAAKTIYEDDKGFLIIVSLPCADLQRVKVTWRNTPSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFVREITLPARIPEDAKLEAYGDETGTMLEIEVPKHRVGPEEHEVHVCLRPSPWREQRAYVDLTEALV 506
MG A++TTLSM D+HL TLLSMD+S SS EE+EREL+RAI++S PPDINLPL AEPSPPPPSWND C ILDV QHYEAET+I +TK GKKC KRLDSVWGAWFFF+FYFKPAL+E SKSK+ R+++GVSGYDK+DLKLDVFLVQHD+ENMYMWVFK+RP+NALGKMQLRSYMNGHSRQGERPFP+S DKGFVRSHRMQRK YRGLSNPQC+HGIEVVP+P+ LDE E KKWMELTGRDLNF+IPLEASDF SWR L TE E+ER LPPLK+N N PK+LLNG L+LSTQ +HVNG+GM+LL NKR K++F D DC L NN+ HSD V+D H+IEPHW+NEFTGVMRS YGPVTAAKTIYEDD+GFLIIVSLP ADL +VKVTWRNT SHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEF+REI L RIPEDAKLEAYGDETGTMLEI VPKHRVGPEEHEV VCLRPS W + YVDLTEALV
Sbjct: 24 MGKALLTTLSMEDNHLSTLLSMDTSSSSREEMERELHRAIHLSPPPDINLPLLAEPSPPPPSWNDTCHILDVGLGAQHYEAETNITVTKGGKKCTKRLDSVWGAWFFFSFYFKPALSENSKSKM-TRESSGVSGYDKSDLKLDVFLVQHDLENMYMWVFKERPENALGKMQLRSYMNGHSRQGERPFPYSVDKGFVRSHRMQRKQYRGLSNPQCIHGIEVVPAPSLMSLDEEEQKKWMELTGRDLNFTIPLEASDFGSWRNLTSTEFELERPLPPLKSNGSNLHPKKLLNGSSLELSTQPSDHVNGDGMNLLPISNKRRKSFFPHGTDDDCCLPNNA-HSDRVLDIHAIEPHWLNEFTGVMRSAYGPVTAAKTIYEDDEGFLIIVSLPFADLAKVKVTWRNTLSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFIREIPLATRIPEDAKLEAYGDETGTMLEIIVPKHRVGPEEHEVRVCLRPSRWSDH-PYVDLTEALV 529
BLAST of DCAR_027641 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7APU6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA58687.1}))
HSP 1 Score: 801.971 bits (2070), Expect = 0.000e+0
Identity = 409/510 (80.20%), Postives = 439/510 (86.08%), Query Frame = 0
Match: A0A5B7APU6 ((Uncharacterized protein {ECO:0000313|EMBL:MPA58687.1}))
HSP 1 Score: 801.971 bits (2070), Expect = 0.000e+0
Identity = 409/510 (80.20%), Postives = 439/510 (86.08%), Query Frame = 0
Query: 1 MGGAVITTLSMDS-HLCTLLSMDSSLSSHEEI-ERELNRAINVSSPPDINLPLSAEPSPPPPSWNDACDILDVSHAPQHYEAETHINLTKVGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKSKIAVRDTNGVSGYDKTDLKLDVFLVQHDMENMYMWVFKDRPDNALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNFAGLDEGECKKWMELTGRDLNFSIPLEASDFSSWRTLPVTELEIER-LPPLK-NNVNQQPKRLLNGCGLKLSTQQPNHVNGEGMDLLANCNKRPKNYFAPENDYDCTLANNSSHSDGVVDAHSIEPHWVNEFTGVMRSTYGPVTAAKTIYEDDKGFLIIVSLPCADLQRVKVTWRNTPSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFVREITLPARIPEDAKLEAYGDETGTMLEIEVPKHRVGPEEHEVHVCLRPSPWREQRAYVDLTEALV 506
MG A++TTLSM+S HL TLLSMD+S SSHEEI EREL R IN+S PPDINLPLSAEPSPPPPSWND CDILDV QHYE ET+IN+TK+GKKCAKRLDSVWGAW FFNFYFKPALNEKSK K+ R+ NGVS YDK+ LKLDVFLVQHDMENMYMWVFK+RP+NALGKMQLRSYMNGHSRQGERPFPFS DKGFVRSHRMQRK YRGLSNPQCVHGIEVV SPN GLDE E KKWMELTGRDLNF+IPLEASDF SWR L +TE E+ER PPLK NN N K+LLNG L+LSTQ +HVNG+GM+LL NKR K++F ND DC L NN+ H D V+D H IEPHW+NEFTGVMRS YGPVTAAKTIYEDD+GFLIIVSLP ADL++VKVTWRNT SHGIVKISCVSTGCMPIIKRQDRTFKLTDP PEHCPPGEFVREI L RIPEDAKLEAYGDETGTMLEI VPKHRVGPEEHEV VCLRPS W + R YVDLTEALV
Sbjct: 1 MGEALLTTLSMESNHLSTLLSMDTSSSSHEEIMERELKRVINLSRPPDINLPLSAEPSPPPPSWNDTCDILDVGLGAQHYEVETNINVTKIGKKCAKRLDSVWGAWVFFNFYFKPALNEKSKPKMT-REANGVSVYDKSGLKLDVFLVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRQGERPFPFSVDKGFVRSHRMQRKQYRGLSNPQCVHGIEVVRSPNLMGLDEEEQKKWMELTGRDLNFTIPLEASDFGSWRNLTITEFELERPTPPLKSNNSNPHSKKLLNGSSLELSTQPSDHVNGDGMNLLHVSNKRRKSFFPHGNDDDCCLPNNA-HLDRVLDIHPIEPHWLNEFTGVMRSAYGPVTAAKTIYEDDEGFLIIVSLPFADLEKVKVTWRNTLSHGIVKISCVSTGCMPIIKRQDRTFKLTDPMPEHCPPGEFVREIPLATRIPEDAKLEAYGDETGTMLEIIVPKHRVGPEEHEVRVCLRPSRWSD-RPYVDLTEALV 507
BLAST of DCAR_027641 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A118K5X1 ((Uncharacterized protein {ECO:0000313|EMBL:KVI09798.1}))
HSP 1 Score: 798.119 bits (2060), Expect = 0.000e+0
Identity = 397/516 (76.94%), Postives = 441/516 (85.47%), Query Frame = 0
Match: A0A118K5X1 ((Uncharacterized protein {ECO:0000313|EMBL:KVI09798.1}))
HSP 1 Score: 798.119 bits (2060), Expect = 0.000e+0
Identity = 397/516 (76.94%), Postives = 441/516 (85.47%), Query Frame = 0
Query: 1 MGGAVITTLSMDS-HLCTLLSMDSSLSSHEEIERELNRAINVSSPPDINLPLSAEPSPPPPSWNDACDILDVSHAPQHYEAETHINLTKVGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKSKIAVRDTNGVSGYDKTDLKLDVFLVQHDMENMYMWVFKDRPDNALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNFAGLDEGECKKWMELTGRDLNFSIPLEASDFSSWRTLPVTELEIERLPPLKNN----VNQQPKRLLNGCGLKLSTQQPNHVNGE----GMDLLANCN-KRPKNYFAPENDYDCTLANNSSHSDGVVDAHSIEPHWVNEFTGVMRSTYGPVTAAKTIYEDDKGFLIIVSLPCADLQRVKVTWRNTPSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFVREITLPARIPEDAKLEAYGDETGTMLEIEVPKHRVGPEEHEVHVCLRPSPWREQRAYVDLTEALV 506
+GG ++TTLSMD+ HL T+LSMDSSLS+H+E+ERELNRA+++S PPDINLPLSAEPSPPP SWND CD+LDV PQHYE ET+IN+TK+GKKCAKRLDSVWGAWFFFNFYFKPALNEKSK+K+ N +GYDK+DLKLDVFLVQHDMENMYMW FK+RP NALGKMQLRSYMNGHSRQGE+PFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVV SPN GLDE E K+WMELTGRDLNF+IPL+ASDF SWR LP T+ EIER P ++NN N QPKRLLNG GL LSTQ HVNGE GMDLL CN KR KN+F ND D +SDGV+D H +EPHW+ EF+GVMR+ YGPVTAAKTIYED++GFLI+VSLPCADLQRVKVTW+NT SHGIVKI CVSTGCMPI+KR+DRTFKLTDPTPEHCPPG+FVREI+LP RIPEDAKLEAYGDE+GTMLEI VPKHR GPEEHEV VCLRPSPW E R YVDLTE L+
Sbjct: 28 LGGDLLTTLSMDNNHLSTILSMDSSLSAHDEMERELNRAVDLSLPPDINLPLSAEPSPPPSSWNDTCDMLDVGLGPQHYEVETNINVTKIGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKNKV-----NRENGYDKSDLKLDVFLVQHDMENMYMWTFKERPGNALGKMQLRSYMNGHSRQGEKPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVRSPNLMGLDEEERKRWMELTGRDLNFAIPLDASDFGSWRNLPSTDFEIERPPVIRNNNSTNGNHQPKRLLNGSGLNLSTQISEHVNGEANGNGMDLLVGCNSKRRKNFFPHGNDDD--------NSDGVLDTHPMEPHWLTEFSGVMRTAYGPVTAAKTIYEDEEGFLIVVSLPCADLQRVKVTWKNTLSHGIVKIFCVSTGCMPILKRKDRTFKLTDPTPEHCPPGDFVREISLPTRIPEDAKLEAYGDESGTMLEIIVPKHREGPEEHEVRVCLRPSPWNE-RPYVDLTETLI 529
BLAST of DCAR_027641 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VRD1 ((uncharacterized protein LOC113725485 {ECO:0000313|RefSeq:XP_027104467.1}))
HSP 1 Score: 775.393 bits (2001), Expect = 0.000e+0
Identity = 388/507 (76.53%), Postives = 432/507 (85.21%), Query Frame = 0
Match: A0A6P6VRD1 ((uncharacterized protein LOC113725485 {ECO:0000313|RefSeq:XP_027104467.1}))
HSP 1 Score: 775.393 bits (2001), Expect = 0.000e+0
Identity = 388/507 (76.53%), Postives = 432/507 (85.21%), Query Frame = 0
Query: 1 MGGAVITTLSMDSH-LCTLLSMDSSLSSHEEIERELNRAINVSSPPDINLPLSAEPSPPPPSWNDACDILDVSHAPQHYEAETHINLTKVGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKSKIAVRDTNGVSGYDKTDLKLDVFLVQHDMENMYMWVFKDRPDNALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNFAGLDEGECKKWMELTGRDLNFSIPLEASDFSSWRTLPVTELEIERLPPLKNNVNQQPKRLLNGCGLKLSTQQPNHVNGEGMDLLANCNKRPKNYFAPENDYDCTLANNSSHSDGVVDAHSIEPHWVNEFTGVMRSTYGPVTAAKTIYEDDKGFLIIVSLPCADLQRVKVTWRNTPSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFVREITLPARIPEDAKLEAYGDETGTMLEIEVPKHRVGPEEHEVHVCLRPSPWREQRAYVDLTEALV 506
MG ++T+LSM+S+ L TLL+MDSS S+HEE ERELNRA+N+ PPDIN+PLSAEPSPPPP WND+CD+LDV PQ YE E + TK+GKKCAKRLDSVWGAWFFF+FYFKP LNEKSK+K+ ++NG++GYDK+DLKLDVFLVQHDMENMYMWVFK+RP+NALGKMQLRSYMNGHSRQGERPFPFS +KGFVRSHRMQRKHYRGLSNPQCVHGIEVV +PN LD+ E KKWMELTGRDLNFSIP EASDF SWR LP T+ E+ R P LK+N + PKRLL+G L LSTQ NH NGEG++LLA CNKR KN+F ND D L NS+ D V+D H+IEP W++EFTGVMRS YGPVTAAKTIYEDD+GFLIIVS+P DLQRVKVTWRNT SHGIVKISCVS GC+P+IKR DRTFKLTDPTPEHCP GEFVREI LP RIPEDAKLEAYGD TGTMLEI VPKHRVGPEEHEV VCLRPSPW E RAYVDLTEALV
Sbjct: 7 MGEDLLTSLSMESNRLSTLLTMDSSSSNHEEAERELNRAVNLLQPPDINVPLSAEPSPPPPVWNDSCDMLDVGIGPQLYEVEANNIATKIGKKCAKRLDSVWGAWFFFSFYFKPVLNEKSKNKVTW-ESNGLNGYDKSDLKLDVFLVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRQGERPFPFSVEKGFVRSHRMQRKHYRGLSNPQCVHGIEVVRTPNLKILDDEERKKWMELTGRDLNFSIPPEASDFGSWRHLPNTDFELVRPPALKSNPSSHPKRLLSGSSLNLSTQTSNHSNGEGLELLAICNKRKKNFFPHGNDDDFCLPINSNQ-DKVLDIHAIEPPWLSEFTGVMRSAYGPVTAAKTIYEDDQGFLIIVSMPFVDLQRVKVTWRNTLSHGIVKISCVSIGCLPMIKRHDRTFKLTDPTPEHCPQGEFVREIPLPTRIPEDAKLEAYGDPTGTMLEILVPKHRVGPEEHEVRVCLRPSPWSE-RAYVDLTEALV 510
BLAST of DCAR_027641 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TVU4 ((Uncharacterized protein {ECO:0000313|EMBL:CDP00074.1}))
HSP 1 Score: 774.622 bits (1999), Expect = 0.000e+0
Identity = 388/507 (76.53%), Postives = 432/507 (85.21%), Query Frame = 0
Match: A0A068TVU4 ((Uncharacterized protein {ECO:0000313|EMBL:CDP00074.1}))
HSP 1 Score: 774.622 bits (1999), Expect = 0.000e+0
Identity = 388/507 (76.53%), Postives = 432/507 (85.21%), Query Frame = 0
Query: 1 MGGAVITTLSMDSH-LCTLLSMDSSLSSHEEIERELNRAINVSSPPDINLPLSAEPSPPPPSWNDACDILDVSHAPQHYEAETHINLTKVGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKSKIAVRDTNGVSGYDKTDLKLDVFLVQHDMENMYMWVFKDRPDNALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNFAGLDEGECKKWMELTGRDLNFSIPLEASDFSSWRTLPVTELEIERLPPLKNNVNQQPKRLLNGCGLKLSTQQPNHVNGEGMDLLANCNKRPKNYFAPENDYDCTLANNSSHSDGVVDAHSIEPHWVNEFTGVMRSTYGPVTAAKTIYEDDKGFLIIVSLPCADLQRVKVTWRNTPSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFVREITLPARIPEDAKLEAYGDETGTMLEIEVPKHRVGPEEHEVHVCLRPSPWREQRAYVDLTEALV 506
MG ++T+LSM+S+ L TLL+MDSS S+HEE ERELNRA+N+ PPDIN+PLSAEPSPPPP WND+CD+LDV PQ YE E + TK+GKKCAKRLDSVWGAWFFF+FYFKP LNEKSK+K+ ++NG++GYDK+DLKLDVFLVQHDMENMYMWVFK+RP+NALGKMQLRSYMNGHSRQGERPFPFS +KGFVRSHRMQRKHYRGLSNPQCVHGIEVV +PN LD+ E KKWMELTGRDLNFSIP EASDF SWR LP T+ E+ R P LK+N + PKRLL+G L LSTQ NH NGEG++LLA CNKR KN+F ND D L NS+ D V+D H+IEP W++EFTGVMRS YGPVTAAKTIYEDD+GFLIIVS+P DLQRVKVTWRNT SHGIVKISCVS GC+P+IKR DRTFKLTDPTPEHCP GEFVREI LP RIPEDAKLEAYGD TGTMLEI VPKHRVGPEEHEV VCLRPSPW E RAYVDLTEALV
Sbjct: 1 MGEDLLTSLSMESNRLSTLLTMDSSSSNHEEAERELNRAVNLLQPPDINVPLSAEPSPPPPVWNDSCDMLDVGIGPQLYEVEANNIATKIGKKCAKRLDSVWGAWFFFSFYFKPVLNEKSKNKVTW-ESNGLNGYDKSDLKLDVFLVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRQGERPFPFSVEKGFVRSHRMQRKHYRGLSNPQCVHGIEVVRTPNLNILDDEERKKWMELTGRDLNFSIPPEASDFGSWRHLPNTDFELVRPPALKSNPSSHPKRLLSGSSLNLSTQTSNHSNGEGLELLAICNKRKKNFFPHGNDDDFCLPINSNQ-DKVLDIHAIEPPWLSEFTGVMRSAYGPVTAAKTIYEDDQGFLIIVSMPFVDLQRVKVTWRNTLSHGIVKISCVSIGCLPMIKRHDRTFKLTDPTPEHCPQGEFVREIPLPTRIPEDAKLEAYGDPTGTMLEILVPKHRVGPEEHEVRVCLRPSPWSE-RAYVDLTEALV 504
BLAST of DCAR_027641 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RRG2 ((ATP-dependent 6-phosphofructokinase {ECO:0000313|EMBL:PSS32589.1}))
HSP 1 Score: 774.237 bits (1998), Expect = 0.000e+0
Identity = 393/502 (78.29%), Postives = 425/502 (84.66%), Query Frame = 0
Match: A0A2R6RRG2 ((ATP-dependent 6-phosphofructokinase {ECO:0000313|EMBL:PSS32589.1}))
HSP 1 Score: 774.237 bits (1998), Expect = 0.000e+0
Identity = 393/502 (78.29%), Postives = 425/502 (84.66%), Query Frame = 0
Query: 1 MGGAVITTLSMDSH-LCTLLSMDSSLSSHEEIERELNRAINVSSPPDINLPLSAEPSPPPPSWNDACDILDVSHAPQHYEAETHINLTKVGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKSKIAVRDTNGVSGYDKT------DLKLDVFLVQHDMENMYMWVFKDRPDNALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNFAGLDEGECKKWMELTGRDLNFSIPLEASDFSSWRTLPVTELEIERLPP-LKNNVNQQPKRLLNGCGLKLSTQQPNHVNGEGMDLLANCNKRPKNYFAPENDYDCTLANNSSHSDGVVDAHSIEPHWVNEFTGVMRSTYGPVTAAKTIYEDDKGFLIIVSLPCADLQRVKVTWRNTPSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFVREITLPARIPEDAKLEAYGDETGTMLEIEVPKHRVGPEEHEVHVCLRPSPWRE 494
MG A +TTLSM+S+ TLLSMDS+ SSHE++ERELNR N S PPDINLPLSAEPSPPPPSWND CD+LDV A QHYE ET+IN+TK GKKCAKRLDSVWGAWFFF+FYFKPALNEKSKSKIA R++NGVSGYDK+ DLKLDVFLVQHDMENMYMWVFK+RP+NALGKMQLRSYMNGHSRQGE+PFPFS D+GF RSHRMQRK YRGLSNPQCVHGIEVV SPN G+DE E KKW+ELTGRD+NFSIPLEASDF SWR LP TE E+ER PP LK N N KRLLNG L LSTQ NH NG+G DL + CNKR KN+ + ND DC L NN D V+D H IEP+W+NEFTGVMRS YGPVTAAKTIYEDD+GFLI+V LP DLQRVKVTWRNT SHGIVKI+CVSTG MPIIKRQDRTFKLTDPTPEHCPPGEFVREI L RIPEDAKLEAY DETGTMLEI VPKH+VGPEEHEVHVCLRPSPW E
Sbjct: 15 MGEAFLTTLSMESNRFSTLLSMDSNSSSHEDMERELNRGFNHSPPPDINLPLSAEPSPPPPSWNDTCDMLDVGLATQHYEGETNINVTKAGKKCAKRLDSVWGAWFFFSFYFKPALNEKSKSKIA-RESNGVSGYDKSSGYDKSDLKLDVFLVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRQGEKPFPFSVDRGFGRSHRMQRKQYRGLSNPQCVHGIEVVRSPNLTGIDEEELKKWIELTGRDINFSIPLEASDFGSWRNLPSTEFELERPPPPLKTNSNPHQKRLLNGSSLNLSTQVSNHANGDGTDL-SGCNKRRKNFLSNGNDDDCCLPNNIC-PDRVLDIHPIEPYWLNEFTGVMRSAYGPVTAAKTIYEDDEGFLIMVCLPFIDLQRVKVTWRNTLSHGIVKIACVSTGRMPIIKRQDRTFKLTDPTPEHCPPGEFVREIPLATRIPEDAKLEAYCDETGTMLEIIVPKHQVGPEEHEVHVCLRPSPWNE 513
BLAST of DCAR_027641 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7H4D5 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5947843.1}))
HSP 1 Score: 771.541 bits (1991), Expect = 0.000e+0
Identity = 393/494 (79.55%), Postives = 419/494 (84.82%), Query Frame = 0
Match: A0A7J7H4D5 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5947843.1}))
HSP 1 Score: 771.541 bits (1991), Expect = 0.000e+0
Identity = 393/494 (79.55%), Postives = 419/494 (84.82%), Query Frame = 0
Query: 1 MGGAVITTLSMDSH-LCTLLSMDSSLSSHEEIERELNRAINVSSPPDINLPLSAEPSPPPPSWNDACDILDVSHAPQHYEAETHINLTKVGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKSKIAVRDTNGVSGYDKTDLKLDVFLVQHDMENMYMWVFKDRPDNALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNFAGLDEGECKKWMELTGRDLNFSIPLEASDFSSWRTLPVTELEIERLPP-LKNNVNQQPKRLLNGCGLKLSTQQPNHVNGEGMDLLANCNKRPKNYFAPENDYDCTLANNSSHSDGVVDAHSIEPHWVNEFTGVMRSTYGPVTAAKTIYEDDKGFLIIVSLPCADLQRVKVTWRNTPSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFVREITLPARIPEDAKLEAYGDETGTMLEIEVPKHRVGPEEHEVHVCLRPSPW 492
MG A +TTLSM+S+ TLLSMDSS S H+E+ERELNR N PPDINLPLSAE SPPPPSWND CD+LDV A QHYEAET+I +TK GKKCAKRLDSVWGAWFFFNFYFKPALNEKSK KI ++NGVSGYDK+DLKLDVFLVQHDMENMYMWVFK++P+NALGKMQLRSYMNGHSRQGERPFPFS D+GFVRSHRMQRK YRGLSNPQCVHGIEVV SPN GLDE E KKW ELTGRD+NFSIPLEASDF SWR L TE E+ER PP LK N N PKRLLNG L LSTQQPNHVNG+G DL NKR KN+ + ND DC L NN+ D V+D H IEP+W+NEFTGVMRS YGPVTAAKTIYEDD+GFLIIVSLP DLQRVKVTWRNT SHGIVKI+CVSTG MPIIKRQDRTFKL DPTPEHCPPGEFVREI L RIPEDAKLEAYGDETGTMLEI VPKH VGPEEHEV VCLRPSPW
Sbjct: 25 MGEAFLTTLSMESNRFSTLLSMDSSSSLHDEMERELNRGFNHYRPPDINLPLSAEHSPPPPSWNDPCDMLDVGLATQHYEAETNITVTKAGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKGKITW-ESNGVSGYDKSDLKLDVFLVQHDMENMYMWVFKEKPENALGKMQLRSYMNGHSRQGERPFPFSVDRGFVRSHRMQRKQYRGLSNPQCVHGIEVVRSPNLMGLDEEERKKWTELTGRDINFSIPLEASDFGSWRNLLNTEFELERPPPPLKTNTNPHPKRLLNGSSLNLSTQQPNHVNGDGTDLPV-YNKRRKNFLSHGNDDDCCLPNNT-QPDRVLDIHPIEPYWLNEFTGVMRSAYGPVTAAKTIYEDDEGFLIIVSLPFVDLQRVKVTWRNTLSHGIVKIACVSTGRMPIIKRQDRTFKLMDPTPEHCPPGEFVREIPLAVRIPEDAKLEAYGDETGTMLEIIVPKHHVGPEEHEVRVCLRPSPW 515
BLAST of DCAR_027641 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1Q3DDP1 ((Uncharacterized protein {ECO:0000313|EMBL:GAV90539.1}))
HSP 1 Score: 770.385 bits (1988), Expect = 0.000e+0
Identity = 380/510 (74.51%), Postives = 427/510 (83.73%), Query Frame = 0
Match: A0A1Q3DDP1 ((Uncharacterized protein {ECO:0000313|EMBL:GAV90539.1}))
HSP 1 Score: 770.385 bits (1988), Expect = 0.000e+0
Identity = 380/510 (74.51%), Postives = 427/510 (83.73%), Query Frame = 0
Query: 1 MGGAVITTLSMDS-HLCTLLSMDSSLSSHEEIERELNRAINVSSPPDINLPLSAEPSPPPPSWNDACDILDVSHAPQHYEAETHINLTKVGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKSKIAVRDTNGVSGYDKTDLKLDVFLVQHDMENMYMWVFKDRPDNALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNFAGLDEGECKKWMELTGRDLNFSIPLEASDFSSWRTLPVTELEIERLP-PLKNNVNQQPKRLLNGCGLKLSTQQPNHVNGEGMDLLANCNKRPKNYFAPENDYDCTLANNSSHSDGVVDA--HSIEPHWVNEFTGVMRSTYGPVTAAKTIYEDDKGFLIIVSLPCADLQRVKVTWRNTPSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFVREITLPARIPEDAKLEAYGDETGTMLEIEVPKHRVGPEEHEVHVCLRPSPWREQRAYVDLTEALV 506
MG A++T LSM++ H TLLSMDS LS +E+ERELNR++ + PPDINLPL +EPSP P +WN CD+LDV PQ YEAET+INL+KV KKC KRLDS+WGAWFFF+FYFKP L+EKSK+K+ VRD+NGVSGYDK+DL+LD FLVQHDMENMYMWVFK+RP+NALGKMQLRSYMNGHSRQGERPFPFS DKGFVRSHRMQRKHYRGLSNPQCVHGIE+V SPN LDE E K+W ELTGRD+ FSIPL+ASDF+SWR LP TE E++R P P+++N N ++LLNG L LSTQ +H NG+GMDL CNKR K+YF ND D L NNS HSD V+D H IEP W NEF+GVM++ YGPVTAAKTIYEDD+GFLIIVSLP ADLQ+VKVTWRNTPSHGIVKISCVST CMP IKRQ+RTFKLTDP PEHCPPGEF+REI LP RIPEDA LEAY DETGTMLEI VPKHR GPEEHEV VCLRPSPW E RAYVDL EALV
Sbjct: 1 MGEALLTALSMENYHPSTLLSMDSGLSHDDELERELNRSVIFTRPPDINLPLMSEPSPTPQTWN-PCDVLDVCLGPQIYEAETNINLSKVAKKCNKRLDSIWGAWFFFSFYFKPVLSEKSKTKM-VRDSNGVSGYDKSDLQLDAFLVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRQGERPFPFSVDKGFVRSHRMQRKHYRGLSNPQCVHGIEIVRSPNLVNLDEEEKKRWQELTGRDIKFSIPLDASDFASWRNLPNTEFELDRPPLPIRSNGNAHSRKLLNGTNLNLSTQPSDHGNGDGMDLSPVCNKRKKDYFPHGNDDDSCLPNNS-HSDTVLDMKIHPIEPLWANEFSGVMKNVYGPVTAAKTIYEDDEGFLIIVSLPFADLQKVKVTWRNTPSHGIVKISCVSTACMPFIKRQNRTFKLTDPAPEHCPPGEFIREIPLPNRIPEDANLEAYCDETGTMLEIIVPKHRTGPEEHEVRVCLRPSPWSE-RAYVDLQEALV 506
BLAST of DCAR_027641 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251UCV9 ((Putative FYD {ECO:0000313|EMBL:OTG21165.1}))
HSP 1 Score: 769.615 bits (1986), Expect = 0.000e+0
Identity = 380/518 (73.36%), Postives = 424/518 (81.85%), Query Frame = 0
Match: A0A251UCV9 ((Putative FYD {ECO:0000313|EMBL:OTG21165.1}))
HSP 1 Score: 769.615 bits (1986), Expect = 0.000e+0
Identity = 380/518 (73.36%), Postives = 424/518 (81.85%), Query Frame = 0
Query: 1 MGGAVITTLSMDS-HLCTLLSMDSSLSSHEEIERELNRAINVSSPPDINLPLSAEPSPPPPSWNDACDILDVSHAPQHYEAETHINLTKVGKKCAKRLDSVWGAWFFFNFYFKPALNEKSKSKIAVRDTNGVSGYDKTDLKLDVFLVQHDMENMYMWVFKDRPDNALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVPSPNFAGLDEGECKKWMELTGRDLNFSIPLEASDFSSWRTLPVTELEIERLPPLKN---NVNQ-QPKRLLNGCGLKLSTQQPNHVNGE------GMDLLANCN-KRPKNYFAPENDYDCTLANNSSHSDGVVDAHSIEPHWVNEFTGVMRSTYGPVTAAKTIYEDDKGFLIIVSLPCADLQRVKVTWRNTPSHGIVKISCVSTGCMPIIKRQDRTFKLTDPTPEHCPPGEFVREITLPARIPEDAKLEAYGDETGTMLEIEVPKHRVGPEEHEVHVCLRPSPWREQRAYVDLTEALV 506
+GG +T LSMD+ HL T+LSMDS LS+H+E+ERELNRA+ +S PPDINLP SAEPSPPP SWND CD+LDV QHYE ET+IN+TK+GKKCAKR+DSVWGAWFFFNFYFKPALNEKSKSK+ N +G+DK+DLKLDVFLVQHDMENMYMW FK+RP+NALGKMQLRSYMNGHSRQGE+ FPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVV SPN GLDE E K+WMELTGRDLNFSIPL+ASDF SWR LP T+ EIER P ++N N N QPKRLLNG GL LSTQ H E G+DL CN KR KN+F ND D + DGV+D H +EPHWVN+F+GVMR+ YGPVT AKTIYED++GFLI+VSLPCADLQRVKVTWRNT SHGIVKI CVSTGCMP++KR+DRTFK+TDP PEHCPPGEF+REI LPARIPEDAKLEAYGDE+GTMLEI VPKHR GPEEHEV VCLRP R YVD TE L+
Sbjct: 40 LGGDFLTNLSMDNNHLSTMLSMDSCLSAHDEMERELNRAVVLSLPPDINLPFSAEPSPPPASWNDGCDMLDVGLGSQHYEVETNINVTKIGKKCAKRVDSVWGAWFFFNFYFKPALNEKSKSKV-----NRENGFDKSDLKLDVFLVQHDMENMYMWAFKERPENALGKMQLRSYMNGHSRQGEKQFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGIEVVRSPNLTGLDEEERKRWMELTGRDLNFSIPLDASDFGSWRNLPSTDFEIERPPVIRNGPANGNHHQPKRLLNGSGLNLSTQLSEHSISEPNGSLNGVDLTVGCNNKRKKNFFPHGNDDD--------NYDGVLDIHHVEPHWVNDFSGVMRNAYGPVTGAKTIYEDEEGFLIVVSLPCADLQRVKVTWRNTLSHGIVKIFCVSTGCMPMLKRKDRTFKMTDPAPEHCPPGEFIREIALPARIPEDAKLEAYGDESGTMLEIIVPKHREGPEEHEVRVCLRPC----DRPYVDFTETLI 540
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7AQ44 | E-Value: 0.000e+0, PID: 79.96 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5868... [more] |
| A0A5J5B866 | E-Value: 0.000e+0, PID: 78.39 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8539... [more] |
| A0A5B7APU6 | E-Value: 0.000e+0, PID: 80.20 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5868... [more] |
| A0A118K5X1 | E-Value: 0.000e+0, PID: 76.94 | (Uncharacterized protein {ECO:0000313|EMBL:KVI0979... [more] |
| A0A6P6VRD1 | E-Value: 0.000e+0, PID: 76.53 | (uncharacterized protein LOC113725485 {ECO:0000313... [more] |
| A0A068TVU4 | E-Value: 0.000e+0, PID: 76.53 | (Uncharacterized protein {ECO:0000313|EMBL:CDP0007... [more] |
| A0A2R6RRG2 | E-Value: 0.000e+0, PID: 78.29 | (ATP-dependent 6-phosphofructokinase {ECO:0000313|... [more] |
| A0A7J7H4D5 | E-Value: 0.000e+0, PID: 79.55 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5947... [more] |
| A0A1Q3DDP1 | E-Value: 0.000e+0, PID: 74.51 | (Uncharacterized protein {ECO:0000313|EMBL:GAV9053... [more] |
| A0A251UCV9 | E-Value: 0.000e+0, PID: 73.36 | (Putative FYD {ECO:0000313|EMBL:OTG21165.1})[more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |