Resource Type:
Polypeptide
Name:
DCAR_026489
Identifier:
DCAR_026489.mRNA-protein
Sequence:
MGLSCYAILFLGLVPALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGF
INHGKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATF
LYGNSAENTYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVC
LCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAI
RYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKV
MQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQP
YMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGP
LLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTP
WEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQG
PIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIP
SALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSL
LLLCRLQKKRSHQNNAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITF
CEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFV
TEKQLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRA
KVSDFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGV
VLLELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKI
ESIWRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKITSGTSK
SESSRRTLLTSFLDDIDSPELSDESLAPSAR*
Sequence Length:
882
Sequence Checksum:
8466a2ecd181e3d11b67903b4a67e44a
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_026489, derives from mRNA, DCAR_026489. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_026489 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_026489 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VDM9 ((probable LRR receptor-like serine/threonine-protein kinase At1g67720 {ECO:0000313|RefSeq:XP_027100087.1}))
HSP 1 Score: 1323.53 bits (3424), Expect = 0.000e+0
Identity = 646/928 (69.61%), Postives = 762/928 (82.11%), Query Frame = 0
Match: A0A6P6VDM9 ((probable LRR receptor-like serine/threonine-protein kinase At1g67720 {ECO:0000313|RefSeq:XP_027100087.1}))
HSP 1 Score: 1323.53 bits (3424), Expect = 0.000e+0
Identity = 646/928 (69.61%), Postives = 762/928 (82.11%), Query Frame = 0
Query: 4 SCYAILFLGLVPALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGFINHGKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATFLYGNS-AENTYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVCLCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAIRYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKVMQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQPYMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGPLLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTPWEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQGPIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIPSALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSLLLLCRLQKKRS-HQNNAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITFCEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFVT-----------------------------------------------EKQLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGVVLLELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKIESIWRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKITS-GTSKSESSRRTLLTSFLDDIDSPELSDESLAPSAR 881
S + + F+ L PA++CQVTEF+SIDCGG K++TD +TGL W SDTG + HGKSV ++N + QY TRR+FPID+KKYCYTL+TEERRRY+VRATFLYG+S E YPKF L+LDATKWSTV++ D S+V+VKEMI+RAPS SIDVCLC ATTG PFIST+ELRPLNLSMYAT++EDDFYLKVAARVNFGA S IRYPDDPYDRIW SDL KRQN+LVGVAPGT RI+T KY++TNTREYPP KVMQTAVVGT GRL+YRLNLEDFPANARAYAYFAEI+DL ++RKFR+EQPY DY NA+VNIAENANGSYTLYEPS+MN TLDFVLSFSFV+T+DS+RGPLLNAIEIS+YVQIA KT+ +DV+ LN +R+ S +S+W DE GDPC+PTPWEWV CS + PRIT I LSGK+V+G IP +L NM+GL ELWLDGN F GPIPD+SNL+NL++LHLENNKLTGP+P Y+GSLPSL+E+YV NNSL+G+IP++LL GK YEGN LR K KR+ ++++G+++G+LAIL +L +GSLLLL ++ KRS H+ + K +SLR STK S+ +SI RGGSLM+E VA + + EIEEAT FS++IGKGSFGPVYYGK+KDGKE+AVKIMADSSSHGTRQFVT EK LDWLARL+IAEDAAKGLEYLH+GCNP+IIHRDVKTSNILLD NMRAKVSDFGLSRQ EED THISSVA+GTVGYLDP YYAN QLTEKSD+YSFGVVLLELISGRKP+S EE+G +WSIVHWARS++RKGD+ISI+D +L VK+ES+WR+AEVAIQCVEQH SSRPRMQEIILAIQDAIKIEKG DK++S G+SK +SSR+TLLTSFL DI+SP+LS +SL PSAR
Sbjct: 5 SQFILFFVCLTPAIVCQVTEFISIDCGGDKSFTDPSTGLVWNSDTGIMAHGKSVEVKNTNGNPLQYSTRREFPIDNKKYCYTLKTEERRRYIVRATFLYGSSETEEPYPKFQLFLDATKWSTVSVADDSRVYVKEMIVRAPSYSIDVCLCCATTGFPFISTIELRPLNLSMYATDYEDDFYLKVAARVNFGALSKDDIRYPDDPYDRIWESDLAKRQNYLVGVAPGTERISTAKYVDTNTREYPPVKVMQTAVVGTMGRLSYRLNLEDFPANARAYAYFAEIQDLAENETRKFRMEQPYT-DYSNAIVNIAENANGSYTLYEPSYMNVTLDFVLSFSFVETRDSSRGPLLNAIEISRYVQIAAKTDDKDVSTLNVIRSMSTESDWTDEQ-GDPCIPTPWEWVNCSDTVPPRITIIFLSGKNVKGEIPSDLKNMEGLTELWLDGNFFTGPIPDLSNLVNLKILHLENNKLTGPVPSYIGSLPSLKEIYVQNNSLSGEIPASLLTGKQIFRYEGNAHLRRGEKSKRHYKLVLGISVGLLAILFVLFMGSLLLLRYIRVKRSYHKFDDKGNSLRNSTKPSTHYSITRGGSLMDERVACYFSSTEIEEATDRFSRKIGKGSFGPVYYGKLKDGKEVAVKIMADSSSHGTRQFVTEVALLSRIHHRNLVPLIGYCEEEHQRMLVYEYMHNGTLRDHINGSDHEKHLDWLARLQIAEDAAKGLEYLHTGCNPTIIHRDVKTSNILLDNNMRAKVSDFGLSRQAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRKPVSFEEYGTEWSIVHWARSLVRKGDVISIVDSTLLGMVKMESVWRIAEVAIQCVEQHGSSRPRMQEIILAIQDAIKIEKGTDKLSSAGSSKGQSSRKTLLTSFL-DIESPDLSKDSLVPSAR 929
BLAST of DCAR_026489 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6V1T6 ((probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X3 {ECO:0000313|RefSeq:XP_027097034.1}))
HSP 1 Score: 1321.22 bits (3418), Expect = 0.000e+0
Identity = 644/928 (69.40%), Postives = 761/928 (82.00%), Query Frame = 0
Match: A0A6P6V1T6 ((probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X3 {ECO:0000313|RefSeq:XP_027097034.1}))
HSP 1 Score: 1321.22 bits (3418), Expect = 0.000e+0
Identity = 644/928 (69.40%), Postives = 761/928 (82.00%), Query Frame = 0
Query: 4 SCYAILFLGLVPALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGFINHGKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATFLYGNS-AENTYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVCLCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAIRYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKVMQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQPYMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGPLLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTPWEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQGPIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIPSALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSLLLLCRLQKKRS-HQNNAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITFCEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFVT-----------------------------------------------EKQLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGVVLLELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKIESIWRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKITS-GTSKSESSRRTLLTSFLDDIDSPELSDESLAPSAR 881
S + + F+ L PA++CQVTEF+SIDCGG K++TD +TGL W SDTG + HGKSV ++N + QY TRR+FPID+KKYCYTL+TEERRRY+VRATFLYG+S E YPKF L+LDATKWSTV++ D S+V+VKEMI+RAPS SIDVCLC ATTG PFIST+ELRPLNLSMYAT++EDDFYLKVAARVNFGA S + IRYPDDPYDRIW SDL KRQN+LVGVAPGT RI+T KY++TNTREYPP KVMQTAVVGT GRL+YRLNLEDFPANARAYAYFAEI+DL ++RKFR+EQPY DY NA+VNIAENANGSYTLYEPS+MN TLDFVLSFSFV+T+DS+RGPLLNAIEIS+YV+IA KT+ +DV+ LN +R+ S +S+W DE GDPC+P PWEWV CS + PRIT I LSGK+V+G IP EL NM+GL ELWLDGN F GPIPD+SNL+NL+++HLENNKLTGP+P Y+GSLPSL+E+YV NNSL+G+IP++LL GK YEGN LR K KR+ ++++G+++G+LAIL +L +GSLLLL ++ KRS H+ + K +SLR STK S+ SI RGGSLM+E VA + + EIEEAT FS++IGKGSFGPVYYGK+KDGKE+AVKIMADSSSHGTRQFVT EK LDWLARL+IAEDAAKGLEYLH+GCNP+IIHRDVKTSNILLD NMRAKVSDFGLSRQ EED THISSVA+GTVGYLDP YYAN QLTEKSD+YSFGVVLLELISGRKP+S EE+G +WSIVHWARS++RKGD+ISI+D +L VK+ES+WR+AEVAIQCVEQH SSRPRMQEIILAIQDAIKIEKG DK++S G+SK +SSR+TLLTSFL DI+SP+LS +SL PSAR
Sbjct: 5 SQFFLFFVCLTPAIVCQVTEFISIDCGGNKSFTDPSTGLVWNSDTGIMAHGKSVEVKNTNGNPLQYSTRREFPIDNKKYCYTLKTEERRRYIVRATFLYGSSETEEPYPKFQLFLDATKWSTVSVSDDSRVYVKEMIVRAPSYSIDVCLCCATTGFPFISTIELRPLNLSMYATDYEDDFYLKVAARVNFGALSKEDIRYPDDPYDRIWESDLAKRQNYLVGVAPGTERISTAKYVDTNTREYPPVKVMQTAVVGTMGRLSYRLNLEDFPANARAYAYFAEIQDLAENETRKFRMEQPYT-DYSNAIVNIAENANGSYTLYEPSYMNVTLDFVLSFSFVETRDSSRGPLLNAIEISRYVEIAAKTDDKDVSTLNVIRSMSTESDWTDEQ-GDPCIPMPWEWVNCSDTVPPRITIIFLSGKNVKGEIPSELKNMEGLTELWLDGNFFTGPIPDLSNLVNLKIVHLENNKLTGPVPSYIGSLPSLKEIYVQNNSLSGEIPASLLTGKQIFRYEGNAHLRRGEKSKRHYKLVLGISVGLLAILFVLFMGSLLLLRYIRVKRSYHKFDDKGNSLRNSTKPSTHSSITRGGSLMDERVACYFSSTEIEEATDRFSRKIGKGSFGPVYYGKLKDGKEVAVKIMADSSSHGTRQFVTEVALLSRIHHRNLVPLIGYCEEEHQRMLVYEYMHNGTLRDHINGSDHEKHLDWLARLQIAEDAAKGLEYLHTGCNPTIIHRDVKTSNILLDNNMRAKVSDFGLSRQAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRKPVSFEEYGTEWSIVHWARSLVRKGDVISIVDSTLLGTVKMESVWRIAEVAIQCVEQHGSSRPRMQEIILAIQDAIKIEKGTDKLSSAGSSKGQSSRKTLLTSFL-DIESPDLSKDSLVPSAR 929
BLAST of DCAR_026489 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068UXN3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1320.84 bits (3417), Expect = 0.000e+0
Identity = 644/928 (69.40%), Postives = 760/928 (81.90%), Query Frame = 0
Match: A0A068UXN3 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1320.84 bits (3417), Expect = 0.000e+0
Identity = 644/928 (69.40%), Postives = 760/928 (81.90%), Query Frame = 0
Query: 4 SCYAILFLGLVPALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGFINHGKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATFLYGNS-AENTYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVCLCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAIRYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKVMQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQPYMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGPLLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTPWEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQGPIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIPSALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSLLLLCRLQKKRS-HQNNAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITFCEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFVT-----------------------------------------------EKQLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGVVLLELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKIESIWRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKITS-GTSKSESSRRTLLTSFLDDIDSPELSDESLAPSAR 881
S + + F+ L PA++CQVTEF+SIDCGG K++TD +TGL W SDTG + HGKSV ++N QY TRR+FPID+KKYCYTL+TEERRRY+VRATFLYG+S E YPKF L+LDATKWSTV++ D S+V+VKEMI+RAPS SIDVCLC ATTG PFIST+ELRPLNLSMYAT++EDDFYLKVAARVNFGA S + IRYPDDPYDRIW SDL KRQN+LVGVAPGT RI+T KY++TNTREYPP KVMQTAVVGT GRL+YRLNLEDFPANARAYAYFAEI+DL ++RKFR+EQPY DY NA+VNIAENANGSYTLYEPS+MN TLDFVLSFSFV+T+DS+RGPLLNAIEIS+YV+IA KT+ +DV+ LN +R+ S +S+W DE GDPC+P PWEWV CS + PRIT I LSGK+V+G IP EL NM+GL ELWLDGN F GPIPD+SNL+NL+++HLENNKLTGP+P Y+GSLPSL+E+YV NNSL+G+IP++LL GK YEGN LR K KR+ ++++G+++G+LAIL +L +GSLLLL ++ KRS H+ + K +SLR STK S+ SI RGGSLM+E VA + + EIEEAT FS++IGKGSFGPVYYGK+KDGKE+AVKIMADSSSHGTRQFVT EK LDWLARL+IAEDAAKGLEYLH+GCNP+IIHRDVKTSNILLD NMRAKVSDFGLSRQ EED THISSVA+GTVGYLDP YYAN QLTEKSD+YSFGVVLLELISGRKP+S EE+G +WSIVHWARS++RKGD+ISI+D +L VK+ES+WR+AEVAIQCVEQH SSRPRMQEIILAIQDAIKIEKG DK++S G+SK +SSR+TLLTSFL DI+SP+LS +SL PSAR
Sbjct: 5 SQFILFFVCLTPAIVCQVTEFISIDCGGNKSFTDPSTGLVWNSDTGIMAHGKSVEVKNTSGNPLQYSTRREFPIDNKKYCYTLKTEERRRYIVRATFLYGSSETEEPYPKFQLFLDATKWSTVSVSDDSRVYVKEMIVRAPSYSIDVCLCCATTGFPFISTIELRPLNLSMYATDYEDDFYLKVAARVNFGALSKEDIRYPDDPYDRIWESDLAKRQNYLVGVAPGTERISTAKYVDTNTREYPPVKVMQTAVVGTMGRLSYRLNLEDFPANARAYAYFAEIQDLAENETRKFRMEQPYT-DYSNAIVNIAENANGSYTLYEPSYMNVTLDFVLSFSFVETRDSSRGPLLNAIEISRYVEIAAKTDDKDVSTLNVIRSMSTESDWTDEQ-GDPCIPMPWEWVNCSDTVPPRITIIFLSGKNVKGEIPSELKNMEGLTELWLDGNFFTGPIPDLSNLVNLKIVHLENNKLTGPVPSYIGSLPSLKEIYVQNNSLSGEIPASLLTGKQIFRYEGNAHLRRGEKSKRHYKLVLGISVGLLAILFVLFMGSLLLLRYIRVKRSYHKFDDKGNSLRNSTKPSTHSSITRGGSLMDERVACYFSSTEIEEATDRFSRKIGKGSFGPVYYGKLKDGKEVAVKIMADSSSHGTRQFVTEVALLSRIHHRNLVPLIGYCEEEHQRMLVYEYMHNGTLRDHINGSDHEKHLDWLARLQIAEDAAKGLEYLHTGCNPTIIHRDVKTSNILLDNNMRAKVSDFGLSRQAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRKPVSFEEYGTEWSIVHWARSLVRKGDVISIVDSTLLGTVKMESVWRIAEVAIQCVEQHGSSRPRMQEIILAIQDAIKIEKGTDKLSSAGSSKGQSSRKTLLTSFL-DIESPDLSKDSLVPSAR 929
BLAST of DCAR_026489 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9TYX6 ((probable LRR receptor-like serine/threonine-protein kinase At1g67720 {ECO:0000313|RefSeq:XP_011086716.1}))
HSP 1 Score: 1318.52 bits (3411), Expect = 0.000e+0
Identity = 662/924 (71.65%), Postives = 752/924 (81.39%), Query Frame = 0
Match: A0A6I9TYX6 ((probable LRR receptor-like serine/threonine-protein kinase At1g67720 {ECO:0000313|RefSeq:XP_011086716.1}))
HSP 1 Score: 1318.52 bits (3411), Expect = 0.000e+0
Identity = 662/924 (71.65%), Postives = 752/924 (81.39%), Query Frame = 0
Query: 8 ILFLGLVPALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGFINH-GKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATFLYGNSAEN-TYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVCLCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAIRYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKVMQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQPYMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGPLLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTPWEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQGPIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIPSALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSLLLLCRLQKKRSHQNNAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITFCEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFVTE-----------------------------------------------KQLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGVVLLELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKIESIWRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKI-TSGTSKSESSRRTLLTSFLDDIDSPELSDESLAPSAR 881
+ FL L+P++ QVTEF+SIDCGGT NYTD TGL WISD G I G SVR+ + + QYQTRRDFP D KKYCYTL TEERRRY+VRATFLYG S TYPKF LYLDATKWSTVT+M+AS+V+VKEMIIRAPS SIDVCLC ATTGSPFISTLE+RPLNLSMYAT++EDDFYLKVA RVNFGA S +AIRYPDDPYDRIW SDLE+R NFLVGVA GT RINTT+ I+ NTREYPP KVMQTAVVGT+G LTYRLNLEDFPANARAYAYFAEIEDLG ++RKF++EQPYMPDY NAVVNIAENANGSYTLYEPS+MN +LDFVLSFSFVKT+DSTRGPLLNA+EIS+YV+IA KT+ QDV LN+LR+ S S W E+ GDPC+PT WEWVTCSS PRITKI LSGK V G IP ELNNM+ L ELWLDGNS IPD+SNL+NL++LHLENN+LTG LPP+LGSLP L+EL++ NNSL+G+IP +LL+G + YEGNP LR V K RN ++++G +IGVLA+L +L I S+LLLCR + K S Q K +S R +TK +A SIARGGS+MEEGVAY+I +IEEAT FS++IGKGSFGPVYYGKMKDGKE+AVKIMADSSSHGT+QF+TE K LDWLARLRIAEDAAKGLEYLH+GCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQ EED THISSVA+GTVGYLDP YYAN QLTEKSD+YSFGVVLLELISGRKP+S EE+G DWSIVHWARS+IRKGD+ISIIDP+L VK+ES+WR+AEVAIQCVEQHS SRPRMQEIILAIQDAIKIEKG DK+ +SG+SK++SSR+TLLTSFL DI SP+LS+ SL PSAR
Sbjct: 9 LAFLCLIPSIFGQVTEFISIDCGGTGNYTDRRTGLAWISDAGVIGEKGISVRVGDVYGNAPQYQTRRDFPTDGKKYCYTLPTEERRRYIVRATFLYGTSMTGGTYPKFQLYLDATKWSTVTVMEASRVYVKEMIIRAPSHSIDVCLCCATTGSPFISTLEMRPLNLSMYATDYEDDFYLKVAERVNFGAPSQEAIRYPDDPYDRIWESDLERRPNFLVGVATGTERINTTRNIDVNTREYPPVKVMQTAVVGTKGSLTYRLNLEDFPANARAYAYFAEIEDLGVNETRKFKMEQPYMPDYSNAVVNIAENANGSYTLYEPSYMNVSLDFVLSFSFVKTRDSTRGPLLNAMEISRYVEIAAKTDEQDVRSLNALRSMSMQSPWT-EEAGDPCIPTNWEWVTCSSTAPPRITKILLSGKKVTGEIPRELNNMEALTELWLDGNSLNWTIPDMSNLVNLKILHLENNQLTGSLPPFLGSLPYLQELHIQNNSLSGEIPPSLLRGNLTFSYEGNPHLRRV-KRTRN-KLVLGTSIGVLAVLFVLSISSILLLCRSRSKTSLQRKEKGNSWRMNTKPLNAHSIARGGSIMEEGVAYYIPLPDIEEATNGFSRKIGKGSFGPVYYGKMKDGKEVAVKIMADSSSHGTKQFITEVALLSRIHHRNLVPLIGYCEEEHQRMLVYEYMHNGTLRDHIHDPDNQKHLDWLARLRIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRKPVSTEEYGSDWSIVHWARSLIRKGDVISIIDPTLVGSVKVESVWRIAEVAIQCVEQHSFSRPRMQEIILAIQDAIKIEKGTDKLDSSGSSKAQSSRKTLLTSFL-DIQSPDLSNGSLVPSAR 928
BLAST of DCAR_026489 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9G0C4 ((Serine/threonine protein kinase {ECO:0000313|EMBL:PIM98359.1}) (2.7.11.1 {ECO:0000313|EMBL:PIM98359.1}))
HSP 1 Score: 1315.06 bits (3402), Expect = 0.000e+0
Identity = 652/931 (70.03%), Postives = 758/931 (81.42%), Query Frame = 0
Match: A0A2G9G0C4 ((Serine/threonine protein kinase {ECO:0000313|EMBL:PIM98359.1}) (2.7.11.1 {ECO:0000313|EMBL:PIM98359.1}))
HSP 1 Score: 1315.06 bits (3402), Expect = 0.000e+0
Identity = 652/931 (70.03%), Postives = 758/931 (81.42%), Query Frame = 0
Query: 3 LSCYAILFLG---LVPALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGFINHGKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATFLYGNSA-ENTYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVCLCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAIRYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKVMQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQPYMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGPLLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTPWEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQGPIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIPSALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSLLLLCRLQKKRSHQNNAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITFCEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFVTE-----------------------------------------------KQLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGVVLLELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKIESIWRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKI-TSGTSKSESSRRTLLTSFLDDIDSPELSDESLAPSAR 881
+ C + FL L+P+++ QVTEF+SIDCGGT NY D +TGL WISD+G + G R+ + S +YQTRRDFP D KKYCYTL T+ERRRY+VRATFLYG SA E T+PKF LYLDATKWSTVT+M+AS+V+VKEMIIRAPS SIDVCLC ATTGSPFISTLE+RPLNLSMYAT++ED+FYLKVA R+NFGA S + IRYPDDPYDRIW SDL++R NFLVGVAPGT RINTTK IN NTREYPP KVMQTAVVGT+G L+YRLNLEDFPANARAYAYFAEIEDLG ++RKF++EQPYMPDY NAVVNIAENANGSYTLYEPS+MN TL+FVLSFSFVKT+DSTRGPLLNA+EIS+YV+I KT+ +DV+ LN+LR S S W +E GDPC+PT WEWV+CSS PRITKI LSGK+V+G IP EL NM+GL ELWLDGNSF G IPD+S+L+NL++LHLENNKLTGPLP YLG+LP L+EL++ NNSL+G+IPS+LLKG + YEGNP L+ V K + ++++G++IG+LAIL +L I S+LLL R + K + Q N K +S RTS + +SIARGGSLM+E VAY+I +IEEAT +FSKQIGKGSFGPVYYGKMKDGKE+AVKIMADSSSHGT+QF+TE K LDWLARLRIAEDAAKGLEYLH+GCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQ EED THISSVA+GTVGYLDP YYAN QLTEKSD+YSFG+VLLELISGRKP+S EE+G DWSIVHWARS+IRKGD+ SIIDP+L VK+ESIWR+AEVAIQCVEQHS SRPRMQEIILAIQDAIKIEKG DK+ +SG+SK++SSR+TLLTSFL DI SP++S+ SL PSAR
Sbjct: 1 MGCVSYFFLTCLCLIPSILSQVTEFISIDCGGTSNYIDNSTGLAWISDSGIMREGAPARIGDTYGNSLRYQTRRDFPTDSKKYCYTLNTQERRRYIVRATFLYGTSATEGTFPKFQLYLDATKWSTVTVMEASRVYVKEMIIRAPSQSIDVCLCCATTGSPFISTLEMRPLNLSMYATDYEDEFYLKVAQRINFGAPSQEDIRYPDDPYDRIWESDLDRRPNFLVGVAPGTERINTTKNINVNTREYPPVKVMQTAVVGTKGSLSYRLNLEDFPANARAYAYFAEIEDLGVNETRKFKMEQPYMPDYSNAVVNIAENANGSYTLYEPSYMNVTLEFVLSFSFVKTRDSTRGPLLNAMEISRYVEIGPKTDERDVSSLNALRVMSPQSEWTEEP-GDPCIPTNWEWVSCSSASPPRITKILLSGKNVKGEIPRELKNMEGLTELWLDGNSFNGTIPDMSDLVNLKILHLENNKLTGPLPSYLGNLPYLKELFIQNNSLSGEIPSSLLKGNLTFSYEGNPHLKRVNKTR--YKLVLGLSIGLLAILFVLSIISILLLRRSRAKSASQRNEKGNSWRTSMNHLTGYSIARGGSLMDESVAYYIPLSDIEEATNSFSKQIGKGSFGPVYYGKMKDGKEVAVKIMADSSSHGTKQFITEVALLSRIHHRNLVPLIGYCEEEHQRMLVYEYMHNGTLRDHIHDSNNQKHLDWLARLRIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGIVLLELISGRKPVSTEEYGSDWSIVHWARSLIRKGDVNSIIDPTLMGTVKVESIWRIAEVAIQCVEQHSFSRPRMQEIILAIQDAIKIEKGMDKLDSSGSSKAQSSRKTLLTSFL-DIQSPDISNGSLVPSAR 927
BLAST of DCAR_026489 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6K852 ((Putative lrr receptor-like serinethreonine-protein kinase {ECO:0000313|EMBL:OIT21192.1}))
HSP 1 Score: 1313.52 bits (3398), Expect = 0.000e+0
Identity = 640/917 (69.79%), Postives = 750/917 (81.79%), Query Frame = 0
Match: A0A1J6K852 ((Putative lrr receptor-like serinethreonine-protein kinase {ECO:0000313|EMBL:OIT21192.1}))
HSP 1 Score: 1313.52 bits (3398), Expect = 0.000e+0
Identity = 640/917 (69.79%), Postives = 750/917 (81.79%), Query Frame = 0
Query: 15 PALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGFINHGKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATFLYGN-SAENTYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVCLCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAIRYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKVMQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQPYMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGPLLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTPWEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQGPIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIPSALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSLLLLCRLQKKRSHQN-NAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITFCEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFVTE-----------------------------------------------KQLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGVVLLELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKIESIWRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKI-TSGTSKSESSRRTLLTSFLDDIDSPELSDESLAPSAR 881
PA++CQVTEFVSIDCG NYTD +TGL W +D G + +GK V + N D S QYQ RRDFP D KKYCYTL T+ERRRYLVRATFLYG+ +AE TYPKF LYLD TKW+T+TI ++S+++VKEMIIRAPS+SIDVCLC ATT SPFISTLELRPLNLSMYAT++ED+FYLKVAARV+FGA S + IRYPDDPYDRIW SDLEKR NFLV VA GT RINTTKYINTNTREYPP KVMQTAVVGT+G L+YRLNL+DFPANARA+AYFAEIEDLG ++RKF++E PY+PDY NAVVNIAENANGSYTLYEPS+MN TLDF+LSFSFVKT+DSTRGPLL+A+EI +Y QIA KT+ QDV LN+ R+ S S+W DED GDPC+P WEWVTCS+ I PRITKI LSGK+V+G IPPELN+M+GL ELWLDGNS G IPD+SNL+NL+ +HLE+NKLTGP+P YLG LPSL EL V NNSLTG+IP +LLKGKV YEGNP LR +KH + +VI+GV++G + +L +L+ S+L LC + K SHQ + K +SLR STK S+ +SIARGGSLM+EGVAY+I EIEEAT+NFSK+IGKGSFGPVYYG+++DGKE+AVK MADSSSHGT+QF TE K LDWLARL IAEDAAKGLEYLH+GCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQ EED TH+SSVA+GTVGYLDP YYAN QLTEKSD+YSFGVVLLELISGR+P+S EE+G +WSIVHWARS+IRKGD+ISI+DP+L +VK+ES+WR+AEVAIQCVE+H SSRPRM EI+ AIQDAIKIEKG DK+ +SG+S+++SSR+TLLTSFL DI+SP++S+ SL PSAR
Sbjct: 16 PAIVCQVTEFVSIDCGSATNYTDPSTGLAWTTDAGIMRNGKPVVVVNADVNSQQYQRRRDFPADSKKYCYTLNTKERRRYLVRATFLYGSPAAEGTYPKFQLYLDTTKWATITISESSRIYVKEMIIRAPSNSIDVCLCCATTESPFISTLELRPLNLSMYATDYEDNFYLKVAARVDFGAQSNEPIRYPDDPYDRIWDSDLEKRPNFLVDVAAGTERINTTKYINTNTREYPPVKVMQTAVVGTKGMLSYRLNLDDFPANARAFAYFAEIEDLGINETRKFKMEHPYVPDYSNAVVNIAENANGSYTLYEPSYMNITLDFILSFSFVKTRDSTRGPLLSAMEICRYAQIAAKTDEQDVTTLNAFRSMSLGSDWTDED-GDPCIPAQWEWVTCSTTIPPRITKITLSGKNVKGEIPPELNHMEGLTELWLDGNSLTGSIPDLSNLVNLRTIHLEDNKLTGPIPSYLGGLPSLIELDVQNNSLTGEIPPSLLKGKVTFKYEGNPNLRPESKHNKRHKVILGVSVGAVVLLFVLITVSILFLCHFRTKVSHQKGDTKGESLRRSTKASTTYSIARGGSLMDEGVAYYIPLSEIEEATENFSKKIGKGSFGPVYYGRLRDGKEVAVKTMADSSSHGTKQFATEVALLSRIHHRNLVPLIGYFEDDHQRMLVYEYMHNGTLRDHINESTSQKHLDWLARLHIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRRPVSTEEYGAEWSIVHWARSLIRKGDVISIMDPALVGRVKVESVWRIAEVAIQCVERHGSSRPRMHEILSAIQDAIKIEKGIDKLSSSGSSRAQSSRKTLLTSFL-DIESPDISNSSLTPSAR 930
BLAST of DCAR_026489 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U7VD03 ((probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 {ECO:0000313|RefSeq:XP_009764238.1}))
HSP 1 Score: 1310.82 bits (3391), Expect = 0.000e+0
Identity = 640/917 (69.79%), Postives = 750/917 (81.79%), Query Frame = 0
Match: A0A1U7VD03 ((probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 {ECO:0000313|RefSeq:XP_009764238.1}))
HSP 1 Score: 1310.82 bits (3391), Expect = 0.000e+0
Identity = 640/917 (69.79%), Postives = 750/917 (81.79%), Query Frame = 0
Query: 15 PALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGFINHGKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATFLYGN-SAENTYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVCLCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAIRYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKVMQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQPYMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGPLLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTPWEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQGPIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIPSALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSLLLLCRLQKKRSHQN-NAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITFCEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFVTE-----------------------------------------------KQLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGVVLLELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKIESIWRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKI-TSGTSKSESSRRTLLTSFLDDIDSPELSDESLAPSAR 881
PA++CQVTEFVSIDCG NYTD +TGL W +D G + +GK V + N D S QYQ RRDFP D KKYCYTL T+ERRRYLVRATFLYGN +AE TYPKF LYLD TKW+T+TI ++S+++VKEMIIRAPS+SIDVCLC ATT SPFISTLELRPLNLSMYAT++ED+FYLKVAARV+FGA S + IRYPDDPYDRIW SDLEKR NFLV VA GT RINTTKYINTNTREYPP KVMQTAVVGT+G L+YRLNL+DFPANARA+AYFAEIE+LG ++RKF++E PY+PDY NAVVNIAENANGSYTLYEPS+MN TLDF+LSFSFVKT+DSTRGPLL+A+EI +Y QIA KTN QDV ILN+ R+ S S+W DED GDPC+P WEWVTCS+ + PRITKI LSGK+V+G IPPELN+M+GL ELWLDGNS G IPD+SNL+NL+ +HLE+NKLTGP+P YLG LPSL EL V NNSLTG+IP +LLKGKV YEGNP LR +KH + +VI+GV++G + +L +L+ S+L LC + K SH+ + K +SLR STK S+ SIARGGSLM+EGVAY+I EIEEAT+NFSK+IGKGSFGPVYYG+++DGKE+AVK MADSSSHGT+QF TE K LDWLARL IAEDAAKGLEYLH+GCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQ EED TH+SSVA+GTVGYLDP YYAN QLTEKSD+YSFGVVLLELISGR+P+S E++G +WSIVHWARS+IRKGD+ISI+DP+L +VK+ES+WR+AEVAIQCVE+H SSRPRM EI+ AIQDAIKIEKG DK+ +SG+SK++SSR+TLLTSFL DI+SP++S+ SL PSAR
Sbjct: 16 PAIVCQVTEFVSIDCGSATNYTDPSTGLTWTTDAGIMRNGKPVVVVNADVNSQQYQRRRDFPADSKKYCYTLNTKERRRYLVRATFLYGNPAAEGTYPKFQLYLDTTKWATITISESSRIYVKEMIIRAPSNSIDVCLCCATTESPFISTLELRPLNLSMYATDYEDNFYLKVAARVDFGAQSNEPIRYPDDPYDRIWDSDLEKRPNFLVDVAAGTERINTTKYINTNTREYPPVKVMQTAVVGTKGMLSYRLNLDDFPANARAFAYFAEIENLGINETRKFKMEHPYVPDYSNAVVNIAENANGSYTLYEPSYMNITLDFILSFSFVKTRDSTRGPLLSAMEICRYSQIAAKTNEQDVTILNAFRSMSLGSDWTDED-GDPCIPAQWEWVTCSTTLPPRITKITLSGKNVKGEIPPELNHMEGLTELWLDGNSLTGSIPDLSNLVNLRTIHLEDNKLTGPIPSYLGGLPSLIELDVQNNSLTGEIPPSLLKGKVTFKYEGNPNLRPESKHNKRHKVILGVSVGAVVLLFVLITVSILFLCHFRTKVSHKKGDTKGESLRRSTKASTTCSIARGGSLMDEGVAYYIPLSEIEEATENFSKKIGKGSFGPVYYGRLRDGKEVAVKTMADSSSHGTKQFATEVALLSRIHHRNLVPLIGYFEDDHQRMLVYEYMHNGTLRDHISESTSQKHLDWLARLHIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRRPVSTEDYGAEWSIVHWARSLIRKGDVISIMDPALVGRVKVESVWRIAEVAIQCVERHGSSRPRMHEILSAIQDAIKIEKGIDKLSSSGSSKAQSSRKTLLTSFL-DIESPDISNSSLTPSAR 930
BLAST of DCAR_026489 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S3YF56 ((probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 {ECO:0000313|RefSeq:XP_016450652.1}))
HSP 1 Score: 1310.82 bits (3391), Expect = 0.000e+0
Identity = 640/917 (69.79%), Postives = 750/917 (81.79%), Query Frame = 0
Match: A0A1S3YF56 ((probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 {ECO:0000313|RefSeq:XP_016450652.1}))
HSP 1 Score: 1310.82 bits (3391), Expect = 0.000e+0
Identity = 640/917 (69.79%), Postives = 750/917 (81.79%), Query Frame = 0
Query: 15 PALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGFINHGKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATFLYGN-SAENTYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVCLCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAIRYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKVMQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQPYMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGPLLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTPWEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQGPIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIPSALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSLLLLCRLQKKRSHQN-NAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITFCEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFVTE-----------------------------------------------KQLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGVVLLELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKIESIWRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKI-TSGTSKSESSRRTLLTSFLDDIDSPELSDESLAPSAR 881
PA++CQVTEFVSIDCG NYTD +TGL W +D G + +GK V + N D S QYQ RRDFP D KKYCYTL T+ERRRYLVRATFLYGN +AE TYPKF LYLD TKW+T+TI ++S+++VKEMIIRAPS+SIDVCLC ATT SPFISTLELRPLNLSMYAT++ED+FYLKVAARV+FGA S + IRYPDDPYDRIW SDLEKR NFLV VA GT RINTTKYINTNTREYPP KVMQTAVVGT+G L+YRLNL+DFPANARA+AYFAEIE+LG ++RKF++E PY+PDY NAVVNIAENANGSYTLYEPS+MN TLDF+LSFSFVKT+DSTRGPLL+A+EI +Y QIA KTN QDV ILN+ R+ S S+W DED GDPC+P WEWVTCS+ + PRITKI LSGK+V+G IPPELN+M+GL ELWLDGNS G IPD+SNL+NL+ +HLE+NKLTGP+P YLG LPSL EL V NNSLTG+IP +LLKGKV YEGNP LR +KH + +VI+GV++G + +L +L+ S+L LC + K SH+ + K +SLR STK S+ SIARGGSLM+EGVAY+I EIEEAT+NFSK+IGKGSFGPVYYG+++DGKE+AVK MADSSSHGT+QF TE K LDWLARL IAEDAAKGLEYLH+GCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQ EED TH+SSVA+GTVGYLDP YYAN QLTEKSD+YSFGVVLLELISGR+P+S E++G +WSIVHWARS+IRKGD+ISI+DP+L +VK+ES+WR+AEVAIQCVE+H SSRPRM EI+ AIQDAIKIEKG DK+ +SG+SK++SSR+TLLTSFL DI+SP++S+ SL PSAR
Sbjct: 16 PAIVCQVTEFVSIDCGSATNYTDPSTGLTWTTDAGIMRNGKPVVVVNADVNSQQYQRRRDFPADSKKYCYTLNTKERRRYLVRATFLYGNPAAEGTYPKFQLYLDTTKWATITISESSRIYVKEMIIRAPSNSIDVCLCCATTESPFISTLELRPLNLSMYATDYEDNFYLKVAARVDFGAQSNEPIRYPDDPYDRIWDSDLEKRPNFLVDVAAGTERINTTKYINTNTREYPPVKVMQTAVVGTKGMLSYRLNLDDFPANARAFAYFAEIENLGINETRKFKMEHPYVPDYSNAVVNIAENANGSYTLYEPSYMNITLDFILSFSFVKTRDSTRGPLLSAMEICRYSQIAAKTNEQDVTILNAFRSMSLGSDWTDED-GDPCIPAQWEWVTCSTTLPPRITKITLSGKNVKGEIPPELNHMEGLTELWLDGNSLTGSIPDLSNLVNLRTIHLEDNKLTGPIPSYLGGLPSLIELDVQNNSLTGEIPPSLLKGKVTFKYEGNPNLRPESKHNKRHKVILGVSVGAVVLLFVLITVSILFLCHFRTKVSHKKGDTKGESLRRSTKASTTCSIARGGSLMDEGVAYYIPLSEIEEATENFSKKIGKGSFGPVYYGRLRDGKEVAVKTMADSSSHGTKQFATEVALLSRIHHRNLVPLIGYFEDDHQRMLVYEYMHNGTLRDHISESTSQKHLDWLARLHIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRRPVSTEDYGAEWSIVHWARSLIRKGDVISIMDPALVGRVKVESVWRIAEVAIQCVERHGSSRPRMHEILSAIQDAIKIEKGIDKLSSSGSSKAQSSRKTLLTSFL-DIESPDISNSSLTPSAR 930
BLAST of DCAR_026489 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G9GW84 ((Serine/threonine protein kinase {ECO:0000313|EMBL:PIN09538.1}) (2.7.11.1 {ECO:0000313|EMBL:PIN09538.1}))
HSP 1 Score: 1310.43 bits (3390), Expect = 0.000e+0
Identity = 650/931 (69.82%), Postives = 756/931 (81.20%), Query Frame = 0
Match: A0A2G9GW84 ((Serine/threonine protein kinase {ECO:0000313|EMBL:PIN09538.1}) (2.7.11.1 {ECO:0000313|EMBL:PIN09538.1}))
HSP 1 Score: 1310.43 bits (3390), Expect = 0.000e+0
Identity = 650/931 (69.82%), Postives = 756/931 (81.20%), Query Frame = 0
Query: 3 LSCYAILFLG---LVPALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGFINHGKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATFLYGNSA-ENTYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVCLCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAIRYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKVMQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQPYMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGPLLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTPWEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQGPIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIPSALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSLLLLCRLQKKRSHQNNAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITFCEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFVTE-----------------------------------------------KQLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGVVLLELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKIESIWRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKI-TSGTSKSESSRRTLLTSFLDDIDSPELSDESLAPSAR 881
+ C + FL L+P+++ QVTEF+SIDCGGT NY D +TGL WISD+G + G R+ + S +YQTRRDFP D KKYCYTL T+ERRRY+VRATFLYG SA E T+PKF LYLDATKWSTVT+M+AS+V+VKEMIIRAPS SIDVCLC ATTGSPFISTLE+RPLNLSMYAT++ED+FYLKVA R+NFGA S + IRYPDDPYDRIW SDL++R NFLVGVAPGT RINTTK IN NTREYPP KVMQTAVVGT+G L+YRLNLEDFPANARAYAYFAEIEDLG ++RKF++EQPYMPDY NAVVNIAENA GSYTLYEP +MN TL+FVLSFSFVKT+DSTRGPLLNA+EIS+YV+I KT+ +DV+ LN+LR S S W +E GDPC+PT WEWV+CSS PRITKI LSGK+V+G IP EL NM+GL ELWLDGNSF G IPD+S+L+NL++LHLENNKLTGPLP YLG+LP L+EL++ NNSL+G+IPS+LLKG + YEGNP L+ V K + ++++G++IG+LAIL +L I S+LLL R + K + Q N K +S RTS + +SIARGGSLM+E VAY+I +IEEAT +FSKQIGKGSFGPVYYGKMKDGKE+AVKIMADSSSHGT+QF+TE K LDWLARLRIAEDAAKGLEYLH+GCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQ EED THISSVA+GTVGYLDP YYAN QLTEKSD+YSFG+VLLELISGRKP+S EE+G DWSIVHWARS+IRKGD+ SIIDP+L VK+ESIWR+AEVAIQCVEQHS SRPRMQEIILAIQDAIKIEKG DK+ +SG+SK++SSR+TLLTSFL DI SP++S+ SL PSAR
Sbjct: 1 MGCVSYFFLTCLCLIPSILSQVTEFISIDCGGTSNYIDNSTGLAWISDSGIMREGAPARIGDTYGNSLRYQTRRDFPTDSKKYCYTLSTQERRRYIVRATFLYGTSATEGTFPKFQLYLDATKWSTVTVMEASRVYVKEMIIRAPSQSIDVCLCCATTGSPFISTLEMRPLNLSMYATDYEDEFYLKVAQRINFGAPSQEDIRYPDDPYDRIWESDLDRRPNFLVGVAPGTERINTTKNINVNTREYPPVKVMQTAVVGTKGSLSYRLNLEDFPANARAYAYFAEIEDLGVNETRKFKMEQPYMPDYSNAVVNIAENAKGSYTLYEPRYMNVTLEFVLSFSFVKTRDSTRGPLLNAMEISRYVEIGPKTDKRDVSSLNALRVMSPQSEWTEEP-GDPCIPTNWEWVSCSSASPPRITKILLSGKNVKGEIPRELKNMEGLTELWLDGNSFNGTIPDMSDLVNLKILHLENNKLTGPLPSYLGNLPYLKELFIQNNSLSGEIPSSLLKGNLTFSYEGNPHLKRVNKTR--YKLVLGLSIGLLAILFVLSIISILLLRRSRAKSASQRNEKGNSWRTSMNHLTGYSIARGGSLMDESVAYYIPLSDIEEATNSFSKQIGKGSFGPVYYGKMKDGKEVAVKIMADSSSHGTKQFITEVALLSRIHHRNLVPLIGYCEEEHQRMLVYEYMHNGTLRDHIHDSNNQKHLDWLARLRIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGIVLLELISGRKPVSTEEYGSDWSIVHWARSLIRKGDVNSIIDPTLMGTVKVESIWRIAEVAIQCVEQHSFSRPRMQEIILAIQDAIKIEKGMDKLDSSGSSKAQSSRKTLLTSFL-DIQSPDISNGSLVPSAR 927
BLAST of DCAR_026489 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AED4 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1310.05 bits (3389), Expect = 0.000e+0
Identity = 662/917 (72.19%), Postives = 753/917 (82.12%), Query Frame = 0
Match: A0A5B7AED4 (Protein kinase domain-containing protein {ECO:0000259|PROSITE:PS50011})
HSP 1 Score: 1310.05 bits (3389), Expect = 0.000e+0
Identity = 662/917 (72.19%), Postives = 753/917 (82.12%), Query Frame = 0
Query: 14 VPALMCQVTEFVSIDCGGTKNYTDLNTGLEWISDTGFINHGKSVRLENPDATSSQYQTRRDFPIDDKKYCYTLRTEERRRYLVRATFLYGNSAE-NTYPKFWLYLDATKWSTVTIMDASKVHVKEMIIRAPSSSIDVCLCHATTGSPFISTLELRPLNLSMYATEFEDDFYLKVAARVNFGAASVQAIRYPDDPYDRIWSSDLEKRQNFLVGVAPGTRRINTTKYINTNTREYPPNKVMQTAVVGTRGRLTYRLNLEDFPANARAYAYFAEIEDLGTLDSRKFRIEQPYMPDYYNAVVNIAENANGSYTLYEPSFMNATLDFVLSFSFVKTQDSTRGPLLNAIEISKYVQIAKKTNMQDVNILNSLRAKSKDSNWVDEDGGDPCLPTPWEWVTCSSDIQPRITKIALSGKDVEGNIPPELNNMDGLIELWLDGNSFQGPIPDISNLINLQVLHLENNKLTGPLPPYLGSLPSLRELYVDNNSLTGDIPSALLKGKVKLGYEGNPGLRNVTKHKRNRRVIVGVAIGVLAILLLLLIGSLLLLCRLQKKRSHQ-NNAKSDSLRTSTKRSSAFSIARGGSLMEEGVAYHITFCEIEEATKNFSKQIGKGSFGPVYYGKMKDGKEIAVKIMADSSSHGTRQFVTE-----------------------------------------------KQLDWLARLRIAEDAAKGLEYLHSGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVAQGTVGYLDPGYYANHQLTEKSDIYSFGVVLLELISGRKPISAEEFGLDWSIVHWARSMIRKGDIISIIDPSLAEKVKIESIWRVAEVAIQCVEQHSSSRPRMQEIILAIQDAIKIEKGCDKITSGTSKSESSRRTLLTSFLDDIDSPELSDESLAPSAR 881
+P+ +CQV EF+SIDCGGT NYTD +TGL WISD G ++HGKSV +EN + SQY+ RRDFP D KKYCYTL TEERRRYLVRATFLYG+S +TYPKF LYLDATKWSTVT++DAS+V+VKEMIIRAPS+SIDVCLC A TGSPFISTLELR LNLSMYAT+FED+FYLKVAARVNFGA S +AIRYPDDPYDRIW SDL+KRQN+LVGVAPGT RINTTK IN TREYPP KVMQTAVVGT+G L+YRLNLEDFPANARAYAYFAEIEDLG ++RKF++ QPY+PDY NAVVNIAENANGSYTLYEPS+MN TLDFVL+FSFVKT DST+GPLLNAIEISKYV+IA KT+ QDVN+LN+L ++S S W G DPC+P W+WVTCSS + PRITKI LSGK++ G IP EL NM+GL ELWLDGNS G IPD+S+LINL+++HLENNKLTGPLP YLGSLPSL+ELYV NSL+G+IP ALL G+V YEGNPGL KHK + ++I+G ++GV+AILL+LL+GSLLLL L++K S+Q ++ + DSLRTS K S+A SI RGG LM+EGVAY+I EIEEAT NFSK+IGKGSFGPVYYG+MK+GKE+AVKIMADSSSHGT+QFVTE K LDWLARL IAEDAAKGLEYLH+GCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVA+GTVGYLDP YYAN QLTEKSD+YSFGVVLLELISGRKP+S E++G +W+IVHWARS+IRKGD+ISIIDP LA VKIESIWR+AEVAIQCVEQH SRPRMQEIIL IQD IKIEKG DK SK +SSR+TLLTSFL DI+SP+LS L PSAR
Sbjct: 15 IPSTVCQVKEFISIDCGGTSNYTDPSTGLAWISDAGMMSHGKSVEVENSNGELSQYRRRRDFPTDSKKYCYTLSTEERRRYLVRATFLYGSSVNVDTYPKFQLYLDATKWSTVTVLDASRVYVKEMIIRAPSNSIDVCLCCAITGSPFISTLELRHLNLSMYATDFEDNFYLKVAARVNFGAQSTEAIRYPDDPYDRIWDSDLDKRQNYLVGVAPGTERINTTKNINIKTREYPPVKVMQTAVVGTKGTLSYRLNLEDFPANARAYAYFAEIEDLGVNETRKFKMRQPYLPDYSNAVVNIAENANGSYTLYEPSYMNVTLDFVLTFSFVKTPDSTQGPLLNAIEISKYVEIASKTDGQDVNVLNTLSSQSAGSVWT--SGSDPCVPAHWDWVTCSSTLPPRITKILLSGKNINGKIPSELKNMEGLTELWLDGNSLTGSIPDMSSLINLKIVHLENNKLTGPLPSYLGSLPSLQELYVQENSLSGEIPPALLTGRVIFKYEGNPGLSQRAKHKTHYKLILGTSVGVVAILLVLLLGSLLLLHNLRRKTSYQKSDDRGDSLRTSNKPSTAPSIPRGGHLMDEGVAYYIPLSEIEEATNNFSKKIGKGSFGPVYYGRMKEGKEVAVKIMADSSSHGTQQFVTEVALLSRIHHRNLVPLIGYCEEEHQRMLVYEYMHNGTLRDHIHDSANQKHLDWLARLYIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDQTHISSVARGTVGYLDPEYYANQQLTEKSDVYSFGVVLLELISGRKPVSTEDYGTEWNIVHWARSLIRKGDVISIIDPCLAGSVKIESIWRIAEVAIQCVEQHGVSRPRMQEIILVIQDVIKIEKGSDK----CSKGQSSRKTLLTSFL-DIESPDLSTGCLQPSAR 924
| Match Name | Stats | Description |
|---|---|---|
| A0A6P6VDM9 | E-Value: 0.000e+0, PID: 69.61 | (probable LRR receptor-like serine/threonine-prote... [more] |
| A0A6P6V1T6 | E-Value: 0.000e+0, PID: 69.40 | (probable LRR receptor-like serine/threonine-prote... [more] |
| A0A068UXN3 | E-Value: 0.000e+0, PID: 69.40 | Protein kinase domain-containing protein {ECO:0000... [more] |
| A0A6I9TYX6 | E-Value: 0.000e+0, PID: 71.65 | (probable LRR receptor-like serine/threonine-prote... [more] |
| A0A2G9G0C4 | E-Value: 0.000e+0, PID: 70.03 | (Serine/threonine protein kinase {ECO:0000313|EMBL... [more] |
| A0A1J6K852 | E-Value: 0.000e+0, PID: 69.79 | (Putative lrr receptor-like serinethreonine-protei... [more] |
| A0A1U7VD03 | E-Value: 0.000e+0, PID: 69.79 | (probable LRR receptor-like serine/threonine-prote... [more] |
| A0A1S3YF56 | E-Value: 0.000e+0, PID: 69.79 | (probable LRR receptor-like serine/threonine-prote... [more] |
| A0A2G9GW84 | E-Value: 0.000e+0, PID: 69.82 | (Serine/threonine protein kinase {ECO:0000313|EMBL... [more] |
| A0A5B7AED4 | E-Value: 0.000e+0, PID: 72.19 | Protein kinase domain-containing protein {ECO:0000... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |