MGSTKTVGSTTQVHRRDPYEVLNVSKDASEQDIKTAYRKLALKYHPDKNV
DNPEAAGLFQEVAYSYSILSDAEKRRQYDNAGFQAIDAEGLEMEVDLSNL
GTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPVGTSVSGKV
EKQCAHFFGVTINGEQAAAGIVVRVTSAAQSKFKLLYFEQEVSGGYGLAL
QEDSDKAGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQ
PCEVSELKAGTHVFAVYGDNFFKTASYTIEALCTKSYEDTTNKLKDIEAQ
ILSKRNELRQFETEYRKALARYQEVTKRYSQEKQTVEELLKQRDGIHSTF
TISKPPSQTSADTASVSNGSSSKIPAENCKGESPREDGSSDGKDKSSKKR
WLNFNLKGSADKKSG*
| Relationships |
|---|
| The polypeptide, DCAR_026742, derives from mRNA, DCAR_026742. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A067GE52 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 711.064 bits (1834), Expect = 0.000e+0
Identity = 338/414 (81.64%), Postives = 375/414 (90.58%), Query Frame = 0
Query: 1 MGSTKTVGSTTQVHRRDPYEVLNVSKDASEQDIKTAYRKLALKYHPDKNVDNPEAAGLFQEVAYSYSILSDAEKRRQYDNAGFQAIDAEGLEMEVDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPVGTSVSGKVEKQCAHFFGVTINGEQAAAGIVVRVTSAAQSKFKLLYFEQEVSGGYGLALQEDSDKAGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSELKAGTHVFAVYGDNFFKTASYTIEALCTKSYEDTTNKLKDIEAQILSKRNELRQFETEYRKALARYQEVTKRYSQEKQTVEELLKQRDGIHSTFTISKPPSQTSADTASVSNGSSSKIPAENCKGESPREDGSSDGKDKSSKKRWLNFNLKGSADKKS 414
MGS K GS+ RRDPYEVL VS+D+S+Q+IKTAYRKLALKYHPDKNV NPEAA LF+EVAYSYSILSD EKRR YDNAGF+AIDAEG++ME+DLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLP+GTSVSGKVEKQCAHFFGVTIN +QA AGIVVRVTS AQSKFKLLYFEQ+ +GGYGLALQEDS+K GKVTSAGMYFLHFQVYRMDST+NA+A+AKDPE+AFFKRLEGLQPCEVSELKAGTH+FAVYGDNFFKTA+YTIEALC KSYED + KLKDIEAQIL KR ELR+FE EYRKALAR+QE T RYSQEKQ+V+ELLKQRD IHS+FT++K S +S ++SNGSSSK+P E+ KGESP EDGSSDGKDKS+KK+W N NLKGS DKK+
Sbjct: 1 MGSNKMEGSSAPTIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKTATYTIEALCAKSYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTVTKTLSTSSVSGNNLSNGSSSKVPGEDSKGESPAEDGSSDGKDKSAKKKWFNLNLKGS-DKKA 413
Match: A0A2H5P5C2 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 710.294 bits (1832), Expect = 0.000e+0
Identity = 337/414 (81.40%), Postives = 376/414 (90.82%), Query Frame = 0
Query: 1 MGSTKTVGSTTQVHRRDPYEVLNVSKDASEQDIKTAYRKLALKYHPDKNVDNPEAAGLFQEVAYSYSILSDAEKRRQYDNAGFQAIDAEGLEMEVDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPVGTSVSGKVEKQCAHFFGVTINGEQAAAGIVVRVTSAAQSKFKLLYFEQEVSGGYGLALQEDSDKAGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSELKAGTHVFAVYGDNFFKTASYTIEALCTKSYEDTTNKLKDIEAQILSKRNELRQFETEYRKALARYQEVTKRYSQEKQTVEELLKQRDGIHSTFTISKPPSQTSADTASVSNGSSSKIPAENCKGESPREDGSSDGKDKSSKKRWLNFNLKGSADKKS 414
MGS K GS+ RRDPYEVL VS+D+S+Q+IKTAYRKLALKYHPDKNV+NPEAA LF+EVAYSYSILSD EKRR YDNAGF+AIDAEG++ME+DLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLP+GTSVSGKVEKQCAHFFGVTIN +QA +GIVVRVTS AQSKFKLLYFEQ+ +GGYGLALQEDS+K GKVTSAGMYFLHFQVYRMDST+NA+A+AKDPE+AFFKRLEGLQPCEVSELKAGTH+FAVYGDNFFKTA+YTIEALC KSYED + KLKDIEAQIL KR ELR+FE EYRKALAR+QE T RYSQEKQ+V+ELLKQRD IHS+FT++K S +S ++SNGSSSK+P E+ KGESP EDGSSDGKDKS+KK+W N NLKGS DKK+
Sbjct: 1 MGSNKMEGSSAPTIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVNNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINDQQAESGIVVRVTSTAQSKFKLLYFEQDTNGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKTATYTIEALCAKSYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTVTKTLSTSSVSGNNLSNGSSSKVPGEDSKGESPAEDGSSDGKDKSAKKKWFNLNLKGS-DKKA 413
Match: V4U6Z0 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 710.294 bits (1832), Expect = 0.000e+0
Identity = 337/414 (81.40%), Postives = 376/414 (90.82%), Query Frame = 0
Query: 1 MGSTKTVGSTTQVHRRDPYEVLNVSKDASEQDIKTAYRKLALKYHPDKNVDNPEAAGLFQEVAYSYSILSDAEKRRQYDNAGFQAIDAEGLEMEVDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPVGTSVSGKVEKQCAHFFGVTINGEQAAAGIVVRVTSAAQSKFKLLYFEQEVSGGYGLALQEDSDKAGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSELKAGTHVFAVYGDNFFKTASYTIEALCTKSYEDTTNKLKDIEAQILSKRNELRQFETEYRKALARYQEVTKRYSQEKQTVEELLKQRDGIHSTFTISKPPSQTSADTASVSNGSSSKIPAENCKGESPREDGSSDGKDKSSKKRWLNFNLKGSADKKS 414
MGS K GS+ RRDPYEVL VS+D+S+Q+IKTAYRKLALKYHPDKNV+NPEAA LF+EVAYSYSILSD EKRR YDNAGF+AIDAEG++ME+DLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLP+GTSVSGKVEKQCAHFFGVTIN +QA +GIVVRVTS AQSKFKLLYFEQ+ +GGYGLALQEDS+K GKVTSAGMYFLHFQVYRMDST+NA+A+AKDPE+AFFKRLEGLQPCEVSELKAGTH+FAVYGDNFFKTA+YTIEALC KSYED + KLKDIEAQIL KR ELR+FE EYRKALAR+QE T RYSQEKQ+V+ELLKQRD IHS+FT++K S +S ++SNGSSSK+P E+ KGESP EDGSSDGKDKS+KK+W N NLKGS DKK+
Sbjct: 1 MGSNKMEGSSAPTIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVNNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINDQQAESGIVVRVTSTAQSKFKLLYFEQDTNGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKTATYTIEALCAKSYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTVTKTLSTSSVSGNNLSNGSSSKVPGEDSKGESPAEDGSSDGKDKSAKKKWFNLNLKGS-DKKA 413
Match: A0A5J5ATG2 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 706.442 bits (1822), Expect = 0.000e+0
Identity = 338/415 (81.45%), Postives = 374/415 (90.12%), Query Frame = 0
Query: 1 MGSTKTVGSTTQVHRRDPYEVLNVSKDASEQDIKTAYRKLALKYHPDKNVDNPEAAGLFQEVAYSYSILSDAEKRRQYDNAGFQAIDAEGLEMEVDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPVGTSVSGKVEKQCAHFFGVTINGEQAAAGIVVRVTSAAQSKFKLLYFEQEVSGGYGLALQEDSDKAGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSELKAGTHVFAVYGDNFFKTASYTIEALCTKSYEDTTNKLKDIEAQILSKRNELRQFETEYRKALARYQEVTKRYSQEKQTVEELLKQRDGIHSTFTISKPPSQTSADTASVSNGSSSKIPAENCKGESPREDGSSDGKDKSSKKRWLNFNLKGSADKKSG 415
MG +K G + RRDPYEVL+VS+D+S+Q+IKTAYRKLALKYHPDKN NPEA+ LF+EVAYSY+ILSD EKRRQYD+AGF+A++AEGL+ME+DLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLP+GTSVSGKVEKQ AHFFGVTI+ EQA AGIV+RVTSA QSKFKLLYFEQ+ +GGYGLALQEDS+K GKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSELKAGTH+FAVYGDNFFKTASYTIEALC KSYEDTT+KLKDIEAQIL KR EL QFETEYRKALAR+QEVT RYSQEKQ+V+ELLKQRD IHS+FT+++ +S VSNGSSSK+P E+ K ESP EDGSSDGKDKSSK++W N NLKGS DKK G
Sbjct: 8 MGGSKREGPSAPALRRDPYEVLSVSRDSSDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYNILSDPEKRRQYDSAGFEALEAEGLDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQSAHFFGVTISEEQAEAGIVIRVTSAVQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKTASYTIEALCAKSYEDTTHKLKDIEAQILRKRTELHQFETEYRKALARFQEVTNRYSQEKQSVDELLKQRDSIHSSFTVARSLVNSSGSGIHVSNGSSSKVPGEDFKAESPGEDGSSDGKDKSSKRKWFNLNLKGS-DKKQG 421
Match: A0A2H5P653 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 698.738 bits (1802), Expect = 0.000e+0
Identity = 337/431 (78.19%), Postives = 376/431 (87.24%), Query Frame = 0
Query: 1 MGSTKTVGSTTQVHRRDPYEVLNVSKDASEQDIKTAYRKLALKYHPDKNVDNPEAAGLFQEVAYSYSILSDAEKRRQYDNAGFQAIDAEGLEMEVDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPVGTSVSGKVEKQCAHFFGVTINGEQAAAGIVVRVTSAAQSKFKLLYFEQEVSGGYGLALQEDSDKAGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSELKAGTHVFAVY-----------------GDNFFKTASYTIEALCTKSYEDTTNKLKDIEAQILSKRNELRQFETEYRKALARYQEVTKRYSQEKQTVEELLKQRDGIHSTFTISKPPSQTSADTASVSNGSSSKIPAENCKGESPREDGSSDGKDKSSKKRWLNFNLKGSADKKS 414
MGS K GS+ RRDPYEVL VS+D+S+Q+IKTAYRKLALKYHPDKNV+NPEAA LF+EVAYSYSILSD EKRR YDNAGF+AIDAEG++ME+DLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLP+GTSVSGKVEKQCAHFFGVTIN +QA +GIVVRVTS AQSKFKLLYFEQ+ +GGYGLALQEDS+K GKVTSAGMYFLHFQVYRMDST+NA+A+AKDPE+AFFKRLEGLQPCEVSELKAGTH+FAVY GDNFFKTA+YTIEALC KSYED + KLKDIEAQIL KR ELR+FE EYRKALAR+QE T RYSQEKQ+V+ELLKQRD IHS+FT++K S +S ++SNGSSSK+P E+ KGESP EDGSSDGKDKS+KK+W N NLKGS DKK+
Sbjct: 1 MGSNKMEGSSAPTIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVNNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINDQQAESGIVVRVTSTAQSKFKLLYFEQDTNGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFAVYGLNCKFYIFTFESYNRNGDNFFKTATYTIEALCAKSYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTVTKTLSTSSVSGNNLSNGSSSKVPGEDSKGESPAEDGSSDGKDKSAKKKWFNLNLKGS-DKKA 430
Match: A0A445BEM7 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 697.967 bits (1800), Expect = 0.000e+0
Identity = 334/413 (80.87%), Postives = 375/413 (90.80%), Query Frame = 0
Query: 1 MGSTKTVGSTTQVHRRDPYEVLNVSKDASEQDIKTAYRKLALKYHPDKNVDNPEAAGLFQEVAYSYSILSDAEKRRQYDNAGFQAIDAEGLEMEVDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPVGTSVSGKVEKQCAHFFGVTINGEQAAAGIVVRVTSAAQSKFKLLYFEQEVSGGYGLALQEDSDKAGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSELKAGTHVFAVYGDNFFKTASYTIEALCTKSYEDTTNKLKDIEAQILSKRNELRQFETEYRKALARYQEVTKRYSQEKQTVEELLKQRDGIHSTFTISKPPSQTSADTASVSNGSSSKIPAENCKGESPREDGSSDGKDKSSKKRWLNFNLKGSADKK 413
MGS K G +T V+RRDPYEVL+VS+D+S+Q+IKTAYRKLALKYHPDKN NPEA+ LF+EVAYSYSILSD EKRRQYD+AGF+A+DA+ ++ME+DLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLP+GTSVSGKVEKQCAHFFGVTIN EQA +GIV+RVTS AQSKFKLLYFEQ+ +GGYGLALQEDS+K GKVTSAGMYFLHFQVYRMDST+NALAMAKDPE AFFKRLEGLQPCEVSELK GTH+FAVYGDNFFKTASYTIEA+C KSYEDTT KLKDIEAQIL KRNELRQFE EYRKALARYQEVT+RY++EKQ+V+ELLKQRDGIHS+FTI K + S +++SNGSSSK+ + KG+SP EDG SDGKDKS+KK+W N NLKGS DK+
Sbjct: 3 MGS-KLEGPSTPVNRRDPYEVLSVSRDSSDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINEEQAESGIVIRVTSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTMNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAKSYEDTTQKLKDIEAQILRKRNELRQFEAEYRKALARYQEVTERYAKEKQSVDELLKQRDGIHSSFTIVK-STNVSGTASNLSNGSSSKVSGDESKGDSPGEDGGSDGKDKSAKKKWFNLNLKGS-DKR 412
Match: A0A6B9VE06 ((Chaperone protein dnaJ {ECO:0000313|EMBL:QHN79663.1}))
HSP 1 Score: 695.656 bits (1794), Expect = 0.000e+0
Identity = 333/413 (80.63%), Postives = 374/413 (90.56%), Query Frame = 0
Query: 1 MGSTKTVGSTTQVHRRDPYEVLNVSKDASEQDIKTAYRKLALKYHPDKNVDNPEAAGLFQEVAYSYSILSDAEKRRQYDNAGFQAIDAEGLEMEVDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPVGTSVSGKVEKQCAHFFGVTINGEQAAAGIVVRVTSAAQSKFKLLYFEQEVSGGYGLALQEDSDKAGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSELKAGTHVFAVYGDNFFKTASYTIEALCTKSYEDTTNKLKDIEAQILSKRNELRQFETEYRKALARYQEVTKRYSQEKQTVEELLKQRDGIHSTFTISKPPSQTSADTASVSNGSSSKIPAENCKGESPREDGSSDGKDKSSKKRWLNFNLKGSADKK 413
MGS K G +T +RRDPYEVL+VS+D+S+Q+IKTAYRKLALKYHPDKN NPEA+ LF+EVAYSYSILSD EKRRQYD+AGF+A+DA+ ++ME+DLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLP+GTSVSGKVEKQCAHFFGVTIN EQA +GIV+RVTS AQSKFKLLYFEQ+ +GGYGLALQEDS+K GKVTSAGMYFLHFQVYRMDST+NALAMAKDPE AFFKRLEGLQPCEVSELK GTH+FAVYGDNFFKTASYTIEA+C KSYEDTT KLKDIEAQIL KRNELRQFE EYRKALARYQEVT+RY++EKQ+V+ELLKQRDGIHS+FTI K + S +++SNGSSSK+ + KG+SP EDG SDGKDKS+KK+W N NLKGS DK+
Sbjct: 3 MGS-KLEGPSTPANRRDPYEVLSVSRDSSDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINEEQAESGIVIRVTSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTMNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAKSYEDTTQKLKDIEAQILRKRNELRQFEAEYRKALARYQEVTERYAKEKQSVDELLKQRDGIHSSFTIVK-STNVSGTASNLSNGSSSKVSGDESKGDSPGEDGGSDGKDKSAKKKWFNLNLKGS-DKR 412
Match: A0A2P5CD86 ((Terminal organelle assembly protein {ECO:0000313|EMBL:PON59012.1}))
HSP 1 Score: 694.501 bits (1791), Expect = 0.000e+0
Identity = 335/417 (80.34%), Postives = 376/417 (90.17%), Query Frame = 0
Query: 1 MG-STKTVGSTTQVHRRDPYEVLNVSKDASEQDIKTAYRKLALKYHPDKNVDNPEAAGLFQEVAYSYSILSDAEKRRQYDNAGFQAIDAEGLEMEVDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPVGTSVSGKVEKQCAHFFGVTINGEQAAAGIVVRVTSAAQSKFKLLYFEQEVSGGYGLALQEDSDKAGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSELKAGTHVFAVYGDNFFKTASYTIEALCTKSYEDTTNKLKDIEAQILSKRNELRQFETEYRKALARYQEVTKRYSQEKQTVEELLKQRDGIHSTFTISKPPSQTSADTASVSNGS-SSKIPAENCKGESPREDGSSDGKDKSSKKRWLNFNLKGSADKKSG 415
MG +K G + +RRDPYEVL+VS+D+++Q+IKTAYRKLALKYHPDKN NPEA+ LF+EVAYSYSILSD EKRRQYD+AGF+A+DAEG++ME+DLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLP+GTSVSGKV+KQCAHFFGVTIN +QA AG+VVRVTS AQSKFKLLYFEQ+V+GGYGLALQEDS+K GKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSELKAGTH+FAVYGDNFFKTA+YTIEALC KSYE+TT KLKDIEAQIL KRNELRQFETEYRKALAR+QEVT RYSQEKQ+V+ELLKQRD IHS+F++++ TS + +SNG+ S K P E+ K ESP EDG SDGKDKS+KK+W N NLKGS DKK G
Sbjct: 1 MGLGSKMEGPSAPANRRDPYEVLSVSRDSTDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEALDAEGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVDKQCAHFFGVTINEQQAEAGVVVRVTSTAQSKFKLLYFEQDVNGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKTATYTIEALCVKSYEETTEKLKDIEAQILRKRNELRQFETEYRKALARFQEVTNRYSQEKQSVDELLKQRDNIHSSFSVTR-TVITSGAASGLSNGNGSGKFPGEDSKAESPGEDGGSDGKDKSAKKKWFNLNLKGS-DKKLG 415
Match: A0A444XV27 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 691.419 bits (1783), Expect = 0.000e+0
Identity = 333/415 (80.24%), Postives = 374/415 (90.12%), Query Frame = 0
Query: 1 MGSTKTVGSTTQVHRRDPYEVLNVSKDASEQDIKTAYRKLALKYHPDKNVDNPEAAGLFQEVAYSYSILSDAEKRRQYDNAGFQAIDAEGLEMEVDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPVGTSVSGK--VEKQCAHFFGVTINGEQAAAGIVVRVTSAAQSKFKLLYFEQEVSGGYGLALQEDSDKAGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSELKAGTHVFAVYGDNFFKTASYTIEALCTKSYEDTTNKLKDIEAQILSKRNELRQFETEYRKALARYQEVTKRYSQEKQTVEELLKQRDGIHSTFTISKPPSQTSADTASVSNGSSSKIPAENCKGESPREDGSSDGKDKSSKKRWLNFNLKGSADKK 413
MGS K G +T +RRDPYEVL+VS+D+S+Q+IKTAYRKLALKYHPDKN NPEA+ LF+EVAYSYSILSD EKRRQYD+AGF+A+DA+ ++ME+DLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLP+GTSVSGK VEKQCAHFFGVTIN EQA +GIV+RVTS AQSKFKLLYFEQ+ +GGYGLALQEDS+K GKVTSAGMYFLHFQVYRMDST+NALAMAKDPE AFFKRLEGLQPCEVSELK GTH+FAVYGDNFFKTASYTIEA+C KSYEDTT KLKDIEAQIL KRNELRQFE EYRKALARYQEVT+RY++EKQ+V+ELLKQRDGIHS+FTI K + S +++SNGSSSK+ + KG+SP EDG SDGKDKS+KK+W N NLKGS DK+
Sbjct: 3 MGS-KLEGPSTPANRRDPYEVLSVSRDSSDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKLQVEKQCAHFFGVTINEEQAESGIVIRVTSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTMNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAKSYEDTTQKLKDIEAQILRKRNELRQFEAEYRKALARYQEVTERYAKEKQSVDELLKQRDGIHSSFTIVK-STNVSGTASNLSNGSSSKVSGDESKGDSPGEDGGSDGKDKSAKKKWFNLNLKGS-DKR 414
Match: A0A7C9DX63 (J domain-containing protein {ECO:0000259|PROSITE:PS50076})
HSP 1 Score: 688.337 bits (1775), Expect = 0.000e+0
Identity = 332/415 (80.00%), Postives = 376/415 (90.60%), Query Frame = 0
Query: 1 MGSTKTVGSTTQVHRRDPYEVLNVSKDASEQDIKTAYRKLALKYHPDKNVDNPEAAGLFQEVAYSYSILSDAEKRRQYDNAGFQAIDAEGLEMEVDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPVGTSVSGKVEKQCAHFFGVTINGEQAAAGIVVRVTSAAQSKFKLLYFEQEVSGGYGLALQEDSDKAGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEAAFFKRLEGLQPCEVSELKAGTHVFAVYGDNFFKTASYTIEALCTKSYEDTTNKLKDIEAQILSKRNELRQFETEYRKALARYQEVTKRYSQEKQTVEELLKQRDGIHSTFTISKPPSQTSADTASVSNGSSSKIPAENCKGESPREDGSSDGKDKSSKKRWLNFNLKGSADKKSG 415
MGS KT ++ V RRDPYEVL+VS+DAS+Q+IKTAYRKLALKYHPDKN +NPEAA LF+EVAYSY+ILSD EKRRQYD AGF+A+DAEG++ME+DLSNLGTVNT+FAALFSKLGVPIKTTISANVLEEALNGTVTVRPLP+GTSVSGKV+KQCAHFFGVTIN EQA +GIVVRVTSAAQSKFKLLYFEQ+ +GGY LALQEDS+K GKVTSAGMYFLHFQVYR+DST+NALAM KDPEAAFFKRLEGLQPCEVSELKAGTH+FAVYGDNFFK A+YTIEALC KSYEDTT KLKD+EAQIL KRNELRQFETEYRKALAR+QEVT RY+QEKQ+V+ELLKQRD IHS+FT+++ S +S+SNGS+SK+ +++ + ESP EDG SDGKDK+SKKRW N NL+GS DKK G
Sbjct: 1 MGS-KTGEASNPVLRRDPYEVLSVSRDASDQEIKTAYRKLALKYHPDKNANNPEAAELFKEVAYSYNILSDPEKRRQYDAAGFEALDAEGMDMEIDLSNLGTVNTVFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVDKQCAHFFGVTINEEQAESGIVVRVTSAAQSKFKLLYFEQDPTGGYSLALQEDSEKTGKVTSAGMYFLHFQVYRLDSTINALAMPKDPEAAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKPATYTIEALCAKSYEDTTEKLKDVEAQILRKRNELRQFETEYRKALARFQEVTNRYNQEKQSVDELLKQRDNIHSSFTVARALSVQIG--SSMSNGSTSKLSSDDAQPESPGEDGGSDGKDKASKKRWFNLNLRGS-DKKLG 411
| Match Name | Stats | Description |
|---|---|---|
| A0A067GE52 | E-Value: 0.000e+0, PID: 81.64 | J domain-containing protein {ECO:0000259|PROSITE:P... [more] |
| A0A2H5P5C2 | E-Value: 0.000e+0, PID: 81.40 | J domain-containing protein {ECO:0000259|PROSITE:P... [more] |
| V4U6Z0 | E-Value: 0.000e+0, PID: 81.40 | J domain-containing protein {ECO:0000259|PROSITE:P... [more] |
| A0A5J5ATG2 | E-Value: 0.000e+0, PID: 81.45 | J domain-containing protein {ECO:0000259|PROSITE:P... [more] |
| A0A2H5P653 | E-Value: 0.000e+0, PID: 78.19 | J domain-containing protein {ECO:0000259|PROSITE:P... [more] |
| A0A445BEM7 | E-Value: 0.000e+0, PID: 80.87 | J domain-containing protein {ECO:0000259|PROSITE:P... [more] |
| A0A6B9VE06 | E-Value: 0.000e+0, PID: 80.63 | (Chaperone protein dnaJ {ECO:0000313|EMBL:QHN79663... [more] |
| A0A2P5CD86 | E-Value: 0.000e+0, PID: 80.34 | (Terminal organelle assembly protein {ECO:0000313|... [more] |
| A0A444XV27 | E-Value: 0.000e+0, PID: 80.24 | J domain-containing protein {ECO:0000259|PROSITE:P... [more] |
| A0A7C9DX63 | E-Value: 0.000e+0, PID: 80.00 | J domain-containing protein {ECO:0000259|PROSITE:P... [more] |
Pages
back to top| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |