Resource Type:
Polypeptide
Name:
DCAR_027334
Identifier:
DCAR_027334.mRNA-protein
Sequence:
MGAEETGHDDYTQDGTVDLRVYEIFERMAYYGISSNLILYLTRKLHQGTV
TASNNVTNWVGTIWMTPVLGAYIADAHLGRYWTFVIASAIYLTGMVVLTL
TVSIPGLKPPKCVDPDISNCEKASTLQLALFYGALYTLTIGTGGTKPNIS
TIGADQFDDFDPKEKAHKLSFFNWWMFSIFLGTLFANTVLVYIQDNVGWT
LGYGLPTLGLAVSIMIFLTGTRFYRHKVPAGSPFTRMVKVIVAALKKWHV
PVPSDPKEFYELELEVYTKKGKFRIDSTPSLRFFNKACVKTGPTDEWTLS
TVTQVEETKQMLRMIPILFATFIPSTMIAQINTLFVKQGTTLERNIGSFK
IPPASLAGFVTLSMLICVVLYDRVFVKVIRKWTNNPRGITILQRMGIGMT
FHIVIMTVASLMERYRLSVAKDHGVVESGEQVPLTIFVLLPQFILMGTAD
AFLEVAKIEFFYDQAPESMKSLGTSYSTTSLGIGSFFSSFLLTTVSHITK
KNEHKGWILNNLNASHLDYYYAFFAILNFLNFIFFLVVSRYYVYKAEVSD
SMEVLGEELRESRRSEQESSRRSRQ*
Sequence Length:
576
Sequence Checksum:
3efbebe36553eba8abd02d01b1b15979
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_027334, derives from mRNA, DCAR_027334. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_027334 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_027334 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5C0U9 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8548859.1}))
HSP 1 Score: 983.786 bits (2542), Expect = 0.000e+0
Identity = 465/580 (80.17%), Postives = 519/580 (89.48%), Query Frame = 0
Match: A0A5J5C0U9 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8548859.1}))
HSP 1 Score: 983.786 bits (2542), Expect = 0.000e+0
Identity = 465/580 (80.17%), Postives = 519/580 (89.48%), Query Frame = 0
Query: 3 AEETGHDDYTQDGTVDLR-------------------VYEIFERMAYYGISSNLILYLTRKLHQGTVTASNNVTNWVGTIWMTPVLGAYIADAHLGRYWTFVIASAIYLTGMVVLTLTVSIPGLKPPKCVDPDISNCEKASTLQLALFYGALYTLTIGTGGTKPNISTIGADQFDDFDPKEKAHKLSFFNWWMFSIFLGTLFANTVLVYIQDNVGWTLGYGLPTLGLAVSIMIFLTGTRFYRHKVPAGSPFTRMVKVIVAALKKWHVPVPSDPKEFYELELEVYTKKGKFRIDSTPSLRFFNKACVKTGPTDEWTLSTVTQVEETKQMLRMIPILFATFIPSTMIAQINTLFVKQGTTLERNIGSFKIPPASLAGFVTLSMLICVVLYDRVFVKVIRKWTNNPRGITILQRMGIGMTFHIVIMTVASLMERYRLSVAKDHGVVESGEQVPLTIFVLLPQFILMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSTTSLGIGSFFSSFLLTTVSHITKKNEHKGWILNNLNASHLDYYYAFFAILNFLNFIFFLVVSRYYVYKAEVSDSMEVLGEELRESR 563
A E G DDYTQDGTVDL+ VYE+FERMAYYGIS+NLI+YLT KLHQGTVT++NNVTNWVGTIWMTP+LGAY+ADAHLGRYWTF+IAS IYL GM +LTL VS+PGL+PP+C D ++++C+KASTLQLA+FYGALYTLTIGTGGTKPNISTIGADQFDDF+ KEKAHKLSFFNWWMFSIF GTLFANTVLVYIQDNVGW +GYGLPTLGLA+SIMIF+ GTRFYRH+VPAGSPFTRM +VIVAAL+KW VP+PSDPKEFYEL+LE Y+KKGKFRIDSTP+LRF NKACVKTG T+ W L VTQVEETKQMLRMIPIL ATF+PS MIAQINTLFVKQGTTL+R IGSFKIPPASLAGFVTLSMLICVVLYDR FV V+++WT NPRGIT+LQRMGIGM HI+IMTVASL+ER+RLSVAKDHGVVE+G+QVPLTIF+LLPQF+LMGTADAFLEVAKIEFFYDQAPESMKSLGTSY+ T+LG+G+F SSFLL+TVSHITKK+ H GWILNNLN S LDYYYAFFA+LN LNFIFFLV+ ++YVYKAEVSDSMEVL EEL SR
Sbjct: 2 AVEEGLDDYTQDGTVDLKGNPVLRSKRGGWTACSFVVVYEVFERMAYYGISANLIIYLTTKLHQGTVTSANNVTNWVGTIWMTPILGAYVADAHLGRYWTFIIASTIYLFGMSLLTLAVSVPGLRPPRCTDVNVADCKKASTLQLAVFYGALYTLTIGTGGTKPNISTIGADQFDDFESKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWAVGYGLPTLGLAISIMIFVAGTRFYRHRVPAGSPFTRMGRVIVAALRKWRVPIPSDPKEFYELDLEEYSKKGKFRIDSTPTLRFLNKACVKTGSTNPWMLCCVTQVEETKQMLRMIPILIATFVPSIMIAQINTLFVKQGTTLQRQIGSFKIPPASLAGFVTLSMLICVVLYDRYFVTVMKRWTKNPRGITLLQRMGIGMVLHIIIMTVASLVERHRLSVAKDHGVVENGKQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYAMTTLGVGNFLSSFLLSTVSHITKKHGHHGWILNNLNDSRLDYYYAFFAVLNVLNFIFFLVMIKFYVYKAEVSDSMEVLREELEGSR 581
BLAST of DCAR_027334 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: D7SZL3 ((Uncharacterized protein {ECO:0000313|EMBL:CBI23690.3}))
HSP 1 Score: 966.452 bits (2497), Expect = 0.000e+0
Identity = 464/588 (78.91%), Postives = 513/588 (87.24%), Query Frame = 0
Match: D7SZL3 ((Uncharacterized protein {ECO:0000313|EMBL:CBI23690.3}))
HSP 1 Score: 966.452 bits (2497), Expect = 0.000e+0
Identity = 464/588 (78.91%), Postives = 513/588 (87.24%), Query Frame = 0
Query: 5 ETGHDDYTQDGTVDLR-------------------VYEIFERMAYYGISSNLILYLTRKLHQGTVTASNNVTNWVGTIWMTPVLGAYIADAHLGRYWTFVIASAIYLTGMVVLTLTVSIPGLKPPKCVDPDISNCEKASTLQLALFYGALYTLTIGTGGTKPNISTIGADQFDDFDPKEKAHKLSFFNWWMFSIFLGTLFANTVLVYIQDNVGWTLGYGLPTLGLAVSIMIFLTGTRFYRHKVPAGSPFTRMVKVIVAALKKWHVPVPSDPKEFYELELEVYTKKGKFRIDSTPSLRFFNKACVKTGPTDEWTLSTVTQVEETKQMLRMIPILFATFIPSTMIAQINTLFVKQGTTLERNIGSFKIPPASLAGFVTLSMLICVVLYDRVFVKVIRKWTNNPRGITILQRMGIGMTFHIVIMTVASLMERYRLSVAKDHGVVESGEQVPLTIFVLLPQFILMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSTTSLGIGSFFSSFLLTTVSHITKKNEHKGWILNNLNASHLDYYYAFFAILNFLNFIFFLVVSRYYVYKAEVSDSMEVLGEELR--ESRRSEQESSR 571
E G DDYTQDGTVDL+ VYE+FERMAYYGIS+NL++YLT+KLHQGTVT+SNNVTNWVGT+WMTPVLGAYIADA+LGRY TFVIASAIYL GM +LT+ VS+PGLKPP+CV D+++C+KASTLQLA+F+GALYTL +GTGGTKPNISTIGADQFDDFDPKEK HKLSFFNWWMFSIF GTLFANT+LVYIQDNVGWTLGYGLPT GLA+SI+IFL GT FYRH+VP+GSPFTRM KVI+AAL+KW PVP+DPKE YEL+LE Y KKGKFRIDSTP+LRF NKACVKTG D W L +VTQVEETKQMLRMIPIL ATF+PSTMIAQINTLFVKQGTTL+R IGSF IPPASL GFVTLSML+ VVLYDR FV + R+ T NPRGIT+LQRMGIG+ FHI IM VASL+ER RLSVAKDHGVVESG QVPL+I +LLPQFILMGTADAFLEVAKIEFFYDQAPESMKSLGTSYS TSLGIG+F SSFLLTTVSHITKK+ H GWILNNLNASHLDYYYAFFAILNFLNFIFF+VV++YYVYKAEV+DSMEVL +LR + QE SR
Sbjct: 4 ENGVDDYTQDGTVDLKGNPVRRSKRGGWTACSFVVVYEVFERMAYYGISTNLVIYLTKKLHQGTVTSSNNVTNWVGTVWMTPVLGAYIADAYLGRYLTFVIASAIYLAGMSLLTVAVSVPGLKPPRCVATDMADCKKASTLQLAVFFGALYTLAVGTGGTKPNISTIGADQFDDFDPKEKGHKLSFFNWWMFSIFFGTLFANTILVYIQDNVGWTLGYGLPTAGLAISIVIFLAGTPFYRHRVPSGSPFTRMAKVIIAALRKWKTPVPTDPKELYELDLEEYAKKGKFRIDSTPTLRFLNKACVKTGSKDPWMLCSVTQVEETKQMLRMIPILIATFVPSTMIAQINTLFVKQGTTLDRGIGSFNIPPASLTGFVTLSMLVSVVLYDRFFVTITRRLTKNPRGITLLQRMGIGLVFHIFIMMVASLVERRRLSVAKDHGVVESGGQVPLSILILLPQFILMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTSLGIGNFLSSFLLTTVSHITKKHGHHGWILNNLNASHLDYYYAFFAILNFLNFIFFIVVTKYYVYKAEVTDSMEVLEGQLRGLTPAVTNQEESR 591
BLAST of DCAR_027334 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A5BCA6 ((Uncharacterized protein {ECO:0000313|EMBL:CAN63331.1}))
HSP 1 Score: 964.14 bits (2491), Expect = 0.000e+0
Identity = 459/570 (80.53%), Postives = 507/570 (88.95%), Query Frame = 0
Match: A5BCA6 ((Uncharacterized protein {ECO:0000313|EMBL:CAN63331.1}))
HSP 1 Score: 964.14 bits (2491), Expect = 0.000e+0
Identity = 459/570 (80.53%), Postives = 507/570 (88.95%), Query Frame = 0
Query: 5 ETGHDDYTQDGTVDLR-------------------VYEIFERMAYYGISSNLILYLTRKLHQGTVTASNNVTNWVGTIWMTPVLGAYIADAHLGRYWTFVIASAIYLTGMVVLTLTVSIPGLKPPKCVDPDISNCEKASTLQLALFYGALYTLTIGTGGTKPNISTIGADQFDDFDPKEKAHKLSFFNWWMFSIFLGTLFANTVLVYIQDNVGWTLGYGLPTLGLAVSIMIFLTGTRFYRHKVPAGSPFTRMVKVIVAALKKWHVPVPSDPKEFYELELEVYTKKGKFRIDSTPSLRFFNKACVKTGPTDEWTLSTVTQVEETKQMLRMIPILFATFIPSTMIAQINTLFVKQGTTLERNIGSFKIPPASLAGFVTLSMLICVVLYDRVFVKVIRKWTNNPRGITILQRMGIGMTFHIVIMTVASLMERYRLSVAKDHGVVESGEQVPLTIFVLLPQFILMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSTTSLGIGSFFSSFLLTTVSHITKKNEHKGWILNNLNASHLDYYYAFFAILNFLNFIFFLVVSRYYVYKAEVSDSMEVL 555
E G DDYTQDGTVDL+ VYE+FERMAYYGIS+NL++YLT+KLHQGTVT+SNNVTNWVGT+WMTPVLGAYIADA+LGRY TFVIASAIYL GM +LT+ VS+PGLKPP+CV D+++C+KASTLQLA+F+GALYTL +GTGGTKPNISTIGADQFDDFDPKEK HKLSFFNWWMFSIF GTLFANT+LVYIQDNVGWTLGYGLPT GLA+SIMIFL GT FYRH+VP+GSPFTRM KVI+AAL+KW PVP+DPKE YEL+LE Y KKGKFRIDSTP+LRF NKACVKTG D W L +VTQVEETKQMLRMIPIL ATF+PSTMIAQINTLFVKQGTTL+R IGSF IPPASL GFVT+SML+ VVLYDR FV ++R+ T NPRGIT+LQRMGIG+ FHIVIM VASL+ER RLSVAKDHGVVESG QVPL+I +LLPQFILMGTADAFLEVAKIEFFYDQAPESMKSLGTSYS TSLGIG+F SSFLLTTVSHITKK+ H GWILNNLNASHLDYYYAFFAILNFLNFIFF+VV++YYVYKAEV+DSMEVL
Sbjct: 4 ENGVDDYTQDGTVDLKGNPVRRSKRGGWTACSFVVVYEVFERMAYYGISTNLVIYLTKKLHQGTVTSSNNVTNWVGTVWMTPVLGAYIADAYLGRYLTFVIASAIYLAGMSLLTVAVSVPGLKPPRCVATDMADCKKASTLQLAVFFGALYTLAVGTGGTKPNISTIGADQFDDFDPKEKGHKLSFFNWWMFSIFFGTLFANTILVYIQDNVGWTLGYGLPTAGLAISIMIFLAGTPFYRHRVPSGSPFTRMAKVIIAALRKWKTPVPTDPKELYELDLEEYGKKGKFRIDSTPTLRFLNKACVKTGSKDPWMLCSVTQVEETKQMLRMIPILIATFVPSTMIAQINTLFVKQGTTLDRGIGSFNIPPASLTGFVTISMLVSVVLYDRFFVTIMRRLTKNPRGITLLQRMGIGLVFHIVIMMVASLVERRRLSVAKDHGVVESGGQVPLSILILLPQFILMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTSLGIGNFLSSFLLTTVSHITKKHGHHGWILNNLNASHLDYYYAFFAILNFLNFIFFIVVTKYYVYKAEVTDSMEVL 573
BLAST of DCAR_027334 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZT67 ((Uncharacterized protein {ECO:0000313|EMBL:MPA46736.1}))
HSP 1 Score: 964.14 bits (2491), Expect = 0.000e+0
Identity = 460/591 (77.83%), Postives = 517/591 (87.48%), Query Frame = 0
Match: A0A5B6ZT67 ((Uncharacterized protein {ECO:0000313|EMBL:MPA46736.1}))
HSP 1 Score: 964.14 bits (2491), Expect = 0.000e+0
Identity = 460/591 (77.83%), Postives = 517/591 (87.48%), Query Frame = 0
Query: 3 AEETGHDDYTQDGTVDLR-------------------VYEIFERMAYYGISSNLILYLTRKLHQGTVTASNNVTNWVGTIWMTPVLGAYIADAHLGRYWTFVIASAIYLTGMVVLTLTVSIPGLKPPKCVDPDISNCEKASTLQLALFYGALYTLTIGTGGTKPNISTIGADQFDDFDPKEKAHKLSFFNWWMFSIFLGTLFANTVLVYIQDNVGWTLGYGLPTLGLAVSIMIFLTGTRFYRHKVPAGSPFTRMVKVIVAALKKWHVPVPSDPKEFYELELEVYTKKGKFRIDSTPSLRFFNKACVKTGPTDEWTLSTVTQVEETKQMLRMIPILFATFIPSTMIAQINTLFVKQGTTLERNIGSFKIPPASLAGFVTLSMLICVVLYDRVFVKVIRKWTNNPRGITILQRMGIGMTFHIVIMTVASLMERYRLSVAKDHGVVESGEQVPLTIFVLLPQFILMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSTTSLGIGSFFSSFLLTTVSHITKK---NEHKGWILNNLNASHLDYYYAFFAILNFLNFIFFLVVSRYYVYKAEVSDSMEVLGEELRESRRSEQESSR 571
A E G DD+TQDGTVDL+ VYE+FERMAYYGISSNLILYLT+KLHQGTVT++NNVTNWVGTIWMTP+LGAY+ADAHLGRYWTFVIA AIYL+GM +LTL VS+PGLKPP CVD + +C+KASTLQLA+FYGALYTL IGTGGTKPNISTIGADQFDDF+PKEKAHKLSFFNWWMFSIF GTLFANT+LVYIQDNVGWTLGYGLPTLGLA+SI+IFL GT FYRH+VP GSPFTRM +VIVAAL+KW VP+P+D KE YEL+LE YTKKGKFRIDSTP+LRF NKA VKTG T W L +VTQVEETKQMLRMIPIL +TF+PS M+AQINTLFVKQGTTL+R+IGSFKIPPASLAGFVT+SML+CVVLYDR FVK++++WT NPRGIT+LQRMGIGM FH+ IM +ASL+ERYRL VAKDHGVVE+G QVPLTIF+LLPQF+LMGTADAFLEVAK+EFFYDQAPESMKSLGTSYSTT+L +G+F SSFLL+TVS+ITKK GWILNNLNASHLDYYYAFFA+LNFLN IFFLV+ RYYVYKAEVS SMEVL EEL S+ + S++
Sbjct: 2 AVEEGLDDFTQDGTVDLKGNAVLRSKRGGWTACSFVVVYEVFERMAYYGISSNLILYLTKKLHQGTVTSANNVTNWVGTIWMTPILGAYVADAHLGRYWTFVIACAIYLSGMSLLTLAVSVPGLKPPHCVDANAMDCKKASTLQLAVFYGALYTLAIGTGGTKPNISTIGADQFDDFEPKEKAHKLSFFNWWMFSIFFGTLFANTILVYIQDNVGWTLGYGLPTLGLAISILIFLAGTPFYRHRVPTGSPFTRMARVIVAALRKWRVPIPTDSKELYELDLEEYTKKGKFRIDSTPTLRFLNKASVKTGSTSPWMLCSVTQVEETKQMLRMIPILISTFVPSIMVAQINTLFVKQGTTLDRHIGSFKIPPASLAGFVTISMLVCVVLYDRFFVKIMKRWTKNPRGITLLQRMGIGMVFHVFIMIIASLIERYRLRVAKDHGVVENGNQVPLTIFILLPQFVLMGTADAFLEVAKLEFFYDQAPESMKSLGTSYSTTTLAVGNFLSSFLLSTVSNITKKHGHGHGHGWILNNLNASHLDYYYAFFAVLNFLNIIFFLVMIRYYVYKAEVSGSMEVLREELEGSKYRPRVSNQ 592
BLAST of DCAR_027334 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6R8N5 ((Protein NRT1/ PTR FAMILY 5.2 like {ECO:0000313|EMBL:PSS23908.1}))
HSP 1 Score: 963.37 bits (2489), Expect = 0.000e+0
Identity = 457/589 (77.59%), Postives = 517/589 (87.78%), Query Frame = 0
Match: A0A2R6R8N5 ((Protein NRT1/ PTR FAMILY 5.2 like {ECO:0000313|EMBL:PSS23908.1}))
HSP 1 Score: 963.37 bits (2489), Expect = 0.000e+0
Identity = 457/589 (77.59%), Postives = 517/589 (87.78%), Query Frame = 0
Query: 1 MGAEETGHDDYTQDGTVDLR-------------------VYEIFERMAYYGISSNLILYLTRKLHQGTVTASNNVTNWVGTIWMTPVLGAYIADAHLGRYWTFVIASAIYLTGMVVLTLTVSIPGLKPPKCVDPDISNCEKASTLQLALFYGALYTLTIGTGGTKPNISTIGADQFDDFDPKEKAHKLSFFNWWMFSIFLGTLFANTVLVYIQDNVGWTLGYGLPTLGLAVSIMIFLTGTRFYRHKVPAGSPFTRMVKVIVAALKKWHVPVPSDPKEFYELELEVYTKKGKFRIDSTPSLRFFNKACVKTGPTDEWTLSTVTQVEETKQMLRMIPILFATFIPSTMIAQINTLFVKQGTTLERNIGSFKIPPASLAGFVTLSMLICVVLYDRVFVKVIRKWTNNPRGITILQRMGIGMTFHIVIMTVASLMERYRLSVAKDHGVVESGEQVPLTIFVLLPQFILMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSTTSLGIGSFFSSFLLTTVSHITKKN-EHKGWILNNLNASHLDYYYAFFAILNFLNFIFFLVVSRYYVYKAEVSDSMEVLGEELRESRRSEQES 569
M EE G DDYTQDGTVDL+ VYE+FERMAYYGISSNL +YLT+KLH+GTVTASNNVTNWVGTIWMTP++GAYIADA LGRYWTF+IAS IYL+GM +LTL VS+PGLKPP+C DPD +NC+KASTL+LA+FYGALYTL +GTGGTKPNISTIGADQFDDF+PKEKA KLSFFNWWMFSIF GTLFANTVLVYIQDNVGWTLGYGLPT GLAVSI+IFL GT FYRH+ P GSPFTRM KVIVA+L+KW VP+PSDPKE YEL+LE Y+KKGKFRIDSTP+LR NKACVKTG T W L VTQVEETKQMLRMIPIL ATF+PSTMIAQINTLFVKQGTTL+R+IG F IPPASLAGFVT+SML+CVV+YDR FVK++++WT NPRG+T+LQRMGIG+ FHI+IMT+ASL+ERYRLSVAK HG+V+SG QVPLTIF+LLPQF+LMGTADAFLEVAKIEFFYDQAPE MKSLGTSYS TSLG+G+F SSFLL+TV ITKK+ +++GWI NNLNASHLDYYYAFFAILN LNFIFFLV+++YYVYKAEVSDSMEVL +ELR + + + S
Sbjct: 1 MRGEEEGVDDYTQDGTVDLKGNPVRRSQRGGWKACSFVVVYEVFERMAYYGISSNLFIYLTKKLHEGTVTASNNVTNWVGTIWMTPIMGAYIADACLGRYWTFIIASGIYLSGMSLLTLAVSVPGLKPPRCTDPDPTNCKKASTLELAVFYGALYTLAVGTGGTKPNISTIGADQFDDFEPKEKAQKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYGLPTAGLAVSILIFLAGTPFYRHRQPTGSPFTRMSKVIVASLRKWSVPIPSDPKELYELDLEEYSKKGKFRIDSTPTLRILNKACVKTGSTSPWMLCPVTQVEETKQMLRMIPILIATFVPSTMIAQINTLFVKQGTTLDRHIGGFHIPPASLAGFVTISMLVCVVIYDRYFVKIMKRWTKNPRGVTLLQRMGIGIVFHIIIMTIASLIERYRLSVAKSHGLVKSGGQVPLTIFILLPQFVLMGTADAFLEVAKIEFFYDQAPEIMKSLGTSYSMTSLGVGNFLSSFLLSTVHRITKKHGDNQGWIRNNLNASHLDYYYAFFAILNLLNFIFFLVMTKYYVYKAEVSDSMEVLEQELRGATSTVEAS 589
BLAST of DCAR_027334 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834H665 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7146090.1}))
HSP 1 Score: 958.362 bits (2476), Expect = 0.000e+0
Identity = 461/588 (78.40%), Postives = 513/588 (87.24%), Query Frame = 0
Match: A0A834H665 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7146090.1}))
HSP 1 Score: 958.362 bits (2476), Expect = 0.000e+0
Identity = 461/588 (78.40%), Postives = 513/588 (87.24%), Query Frame = 0
Query: 1 MGAEETG--HDDYTQDGTVDLR-------------------VYEIFERMAYYGISSNLILYLTRKLHQGTVTASNNVTNWVGTIWMTPVLGAYIADAHLGRYWTFVIASAIYLTGMVVLTLTVSIPGLKPPKCVDPDISNCEKASTLQLALFYGALYTLTIGTGGTKPNISTIGADQFDDFDPKEKAHKLSFFNWWMFSIFLGTLFANTVLVYIQDNVGWTLGYGLPTLGLAVSIMIFLTGTRFYRHKVPAGSPFTRMVKVIVAALKKWHVPVPSDPKEFYELELEVYTKKGKFRIDSTPSLRFFNKACVKTGPTDEWTLSTVTQVEETKQMLRMIPILFATFIPSTMIAQINTLFVKQGTTLERNIGSFKIPPASLAGFVTLSMLICVVLYDRVFVKVIRKWTNNPRGITILQRMGIGMTFHIVIMTVASLMERYRLSVAKDHGVVESGEQVPLTIFVLLPQFILMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSTTSLGIGSFFSSFLLTTVSHITKKNEHKGWILNNLNASHLDYYYAFFAILNFLNFIFFLVVSRYYVYKAEVSDSMEVLGEELR-ESRRSE 566
MG EE G H DYT+DGTVDL+ VYE+FERMAYYGISSNLILYLTRKLHQGTVTA+NNVTNWVGTIWMTP+LGAY+ADAHLGRYWTFVIAS IYL GM +LTL+VS+PGLKPP C DP NC+KASTLQLA+FYGALYTL +GTGGTKPNISTIGADQFD+F+PKEKAHKLSFFNWWMFSIF GTLFANTVLVYIQDNVGWTLGYGLPT GLAVSI+IFL G+ FYRHKVP+GSPFTRM KVIVAAL+KW VPVP+DPKE YEL+LE Y K G +RIDSTP+LRF NKACVKT T W L +VTQVEETKQMLRMIPIL ATFIPSTMIAQI TLFVKQGTTL+R IG F+IPPASLAGFVT+SML+CVVLYDR FVK++++WT NPRGIT+LQRMGIG+ HI+IM +ASL ERYRL VAKDHG+VESG QVPL+IF+LLPQF+LMGTADAFLEVAKIEFFYDQAPE MKSLGTSYS TSLG+G+F SSFLL+TVSHIT+++ WILNNLNASHLDYYYAFFAILNFLNF FFL+++++YVYKAEVS+SMEVL +ELR S RSE
Sbjct: 10 MGVEEGGVLHGDYTEDGTVDLKGNPVRRSKRGGWKACSFVVVYEVFERMAYYGISSNLILYLTRKLHQGTVTAANNVTNWVGTIWMTPILGAYVADAHLGRYWTFVIASGIYLAGMSLLTLSVSLPGLKPPHCPDPK--NCKKASTLQLAVFYGALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYGLPTAGLAVSILIFLVGSPFYRHKVPSGSPFTRMAKVIVAALRKWRVPVPTDPKELYELDLEKYNKNGVYRIDSTPTLRFLNKACVKTDSTTPWMLCSVTQVEETKQMLRMIPILMATFIPSTMIAQIGTLFVKQGTTLQRRIGGFEIPPASLAGFVTISMLVCVVLYDRYFVKIMKRWTKNPRGITLLQRMGIGVVLHILIMVIASLTERYRLRVAKDHGLVESGGQVPLSIFILLPQFVLMGTADAFLEVAKIEFFYDQAPEMMKSLGTSYSMTSLGVGNFISSFLLSTVSHITREHGRHEWILNNLNASHLDYYYAFFAILNFLNFGFFLLMTKFYVYKAEVSESMEVLAQELRGSSLRSE 595
BLAST of DCAR_027334 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: B9HSR8 ((Uncharacterized protein {ECO:0000313|EMBL:PNT15128.1}))
HSP 1 Score: 956.822 bits (2472), Expect = 0.000e+0
Identity = 448/581 (77.11%), Postives = 509/581 (87.61%), Query Frame = 0
Match: B9HSR8 ((Uncharacterized protein {ECO:0000313|EMBL:PNT15128.1}))
HSP 1 Score: 956.822 bits (2472), Expect = 0.000e+0
Identity = 448/581 (77.11%), Postives = 509/581 (87.61%), Query Frame = 0
Query: 5 ETGHDDYTQDGTVDLR-------------------VYEIFERMAYYGISSNLILYLTRKLHQGTVTASNNVTNWVGTIWMTPVLGAYIADAHLGRYWTFVIASAIYLTGMVVLTLTVSIPGLKPPKCVDPDISNCEKASTLQLALFYGALYTLTIGTGGTKPNISTIGADQFDDFDPKEKAHKLSFFNWWMFSIFLGTLFANTVLVYIQDNVGWTLGYGLPTLGLAVSIMIFLTGTRFYRHKVPAGSPFTRMVKVIVAALKKWHVPVPSDPKEFYELELEVYTKKGKFRIDSTPSLRFFNKACVKTGPTDEWTLSTVTQVEETKQMLRMIPILFATFIPSTMIAQINTLFVKQGTTLERNIGSFKIPPASLAGFVTLSMLICVVLYDRVFVKVIRKWTNNPRGITILQRMGIGMTFHIVIMTVASLMERYRLSVAKDHGVVESGEQVPLTIFVLLPQFILMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSTTSLGIGSFFSSFLLTTVSHITKKNEHKGWILNNLNASHLDYYYAFFAILNFLNFIFFLVVSRYYVYKAEVSDSMEVLGEELRESRRSE 566
E G DDYTQDGTVDL+ VYE+FERMAYYGISSNL++YLT+KLHQGTV +SNNVTNWVGTIW+TP+LGAY+ADAHLGRYWTFV+AS IYL+GM +LTL+VS+P L+PP C + ++ NC++ASTLQLA+F+GALYTL IGTGGTKPNISTIGADQFDDF PKEKA+KLSFFNWWMFSIF GTLFANT+LVYIQDNVGW LGYGLPTLGL +S+ IFL GT FYRH+ P GSPFTRM KVIVAAL+KW V VP+DPKE +EL+LE Y K GKFRIDSTP+LRF NKA VKTG TD W L +VTQVEETKQMLRMIPIL +TF+PSTMIAQINTLFVKQGTTL+R IG+F++PPASLAGFVTLSML+CVVLYDR FV+++R+WT NPRGIT+LQRMGIG+ FHI+IM ASL+ER+RLSVA+ HG+VE G QVPLTIF+LLPQF+LMG ADAFLEVAK+EFFYDQAPESMKSLGTSYSTTSLG+G+F SSFLL+TVSHITKK+ H+GWILNNLNASHLDYYYAFFAILNFLNFIFFL V R+YVYKAEVSDSMEVL EEL+ R E
Sbjct: 2 EHGLDDYTQDGTVDLKGKPVLRSKRGGLKACSFVVVYEVFERMAYYGISSNLVVYLTKKLHQGTVKSSNNVTNWVGTIWLTPILGAYVADAHLGRYWTFVVASVIYLSGMSLLTLSVSLPALRPPICKNANVENCKEASTLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDDFHPKEKAYKLSFFNWWMFSIFFGTLFANTILVYIQDNVGWALGYGLPTLGLVISVAIFLAGTPFYRHRQPTGSPFTRMAKVIVAALRKWKVSVPNDPKELHELDLEEYAKAGKFRIDSTPTLRFLNKAAVKTGSTDPWMLCSVTQVEETKQMLRMIPILISTFVPSTMIAQINTLFVKQGTTLDRQIGNFEVPPASLAGFVTLSMLVCVVLYDRFFVRIVRRWTKNPRGITLLQRMGIGLVFHIIIMITASLIERHRLSVARQHGLVEKGGQVPLTIFILLPQFVLMGAADAFLEVAKLEFFYDQAPESMKSLGTSYSTTSLGVGNFISSFLLSTVSHITKKHGHRGWILNNLNASHLDYYYAFFAILNFLNFIFFLGVIRFYVYKAEVSDSMEVLAEELKAMRLRE 582
BLAST of DCAR_027334 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6RE66 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8076090.1}))
HSP 1 Score: 953.74 bits (2464), Expect = 0.000e+0
Identity = 455/593 (76.73%), Postives = 511/593 (86.17%), Query Frame = 0
Match: A0A5N6RE66 ((Uncharacterized protein {ECO:0000313|EMBL:KAE8076090.1}))
HSP 1 Score: 953.74 bits (2464), Expect = 0.000e+0
Identity = 455/593 (76.73%), Postives = 511/593 (86.17%), Query Frame = 0
Query: 1 MGAEETGHDDYTQDGTVDLR-------------------VYEIFERMAYYGISSNLILYLTRKLHQGTVTASNNVTNWVGTIWMTPVLGAYIADAHLGRYWTFVIASAIYLTGMVVLTLTVSIPGLKPPKCVDPDISNCEKASTLQLALFYGALYTLTIGTGGTKPNISTIGADQFDDFDPKEKAHKLSFFNWWMFSIFLGTLFANTVLVYIQDNVGWTLGYGLPTLGLAVSIMIFLTGTRFYRHKVPAGSPFTRMVKVIVAALKKWHVPVPSDPKEFYELELEVYTKKGKFRIDSTPSLRFFNKACVKTGPTDEWTLSTVTQVEETKQMLRMIPILFATFIPSTMIAQINTLFVKQGTTLERNIGSFKIPPASLAGFVTLSMLICVVLYDRVFVKVIRKWTNNPRGITILQRMGIGMTFHIVIMTVASLMERYRLSVAKDHGVVESGEQVPLTIFVLLPQFILMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSTTSLGIGSFFSSFLLTTVSHITKKNEHKGWILNNLNASHLDYYYAFFAILNFLNFIFFLVVSRYYVYKAEVSDSMEVLGEELR--ESRRSEQESSRR 572
M EE DDYT+DGTVDLR VYE+FERMAYYGISSNLILYLT+KLHQGTVTASNNVTNWVGT+W+TP+LGAY+ADAHLGRYWTFVIA IY++GM VLTL VS+ LKPP C D +I NC+KASTLQLA+FYGALYTL +GTGGTKPNISTIGADQFDDF PKEK HKLSFFNWWMFSIF GTLFANTVLV+IQDNVGWTLGY LPTLGLA+SI IFL GT FYRHKVP GSPFTRM KVIVAA++KW V +P+DPKE YEL+LE Y KKGKFRIDSTP+LRF KA VKTG T+ W L +VTQVEETKQMLRMIPIL ATF+PSTMIAQ NTLFVKQGTTLER+IGSF+IPPASLAGF+T+SMLI VVLYDR VK +++WT NPRGIT+LQRMG+G+ HI+IMT+ASL ERYRLSVAK+HG+VE+G QVPLTIF+LLPQF+LMGTADAFLEVAKIEFFYDQAPESMKSLGTSYS T+LG+G+F SSFLL+TVSHITK++ H GWILNNLNASHLDYYYAFFA+LN LN +FFLVV ++YVYKAEVSDS++VL EEL+ + S QE SRR
Sbjct: 1 MATEEEALDDYTKDGTVDLRGNPVRRSKRGGWTACSFIVVYEVFERMAYYGISSNLILYLTKKLHQGTVTASNNVTNWVGTVWITPILGAYLADAHLGRYWTFVIACIIYISGMSVLTLAVSLSSLKPPSCSDANIENCKKASTLQLAVFYGALYTLALGTGGTKPNISTIGADQFDDFHPKEKGHKLSFFNWWMFSIFFGTLFANTVLVWIQDNVGWTLGYALPTLGLAISIAIFLAGTPFYRHKVPTGSPFTRMAKVIVAAIRKWRVRIPNDPKELYELDLEEYAKKGKFRIDSTPTLRFLTKASVKTGSTNPWMLCSVTQVEETKQMLRMIPILAATFVPSTMIAQTNTLFVKQGTTLERSIGSFEIPPASLAGFITISMLISVVLYDRFLVKFMQRWTKNPRGITLLQRMGVGLVIHIIIMTIASLTERYRLSVAKEHGLVENGGQVPLTIFILLPQFLLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSMTTLGVGNFLSSFLLSTVSHITKEHGHHGWILNNLNASHLDYYYAFFAVLNVLNLVFFLVVIKFYVYKAEVSDSIQVLTEELKGMTVKVSNQEESRR 593
BLAST of DCAR_027334 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D3A616 ((Uncharacterized protein {ECO:0000313|EMBL:TYJ45343.1}))
HSP 1 Score: 952.97 bits (2462), Expect = 0.000e+0
Identity = 455/590 (77.12%), Postives = 511/590 (86.61%), Query Frame = 0
Match: A0A5D3A616 ((Uncharacterized protein {ECO:0000313|EMBL:TYJ45343.1}))
HSP 1 Score: 952.97 bits (2462), Expect = 0.000e+0
Identity = 455/590 (77.12%), Postives = 511/590 (86.61%), Query Frame = 0
Query: 3 AEETGHDDYTQDGTVDLR-------------------VYEIFERMAYYGISSNLILYLTRKLHQGTVTASNNVTNWVGTIWMTPVLGAYIADAHLGRYWTFVIASAIYLTGMVVLTLTVSIPGLKPPKCVDPDISNCEKASTLQLALFYGALYTLTIGTGGTKPNISTIGADQFDDFDPKEKAHKLSFFNWWMFSIFLGTLFANTVLVYIQDNVGWTLGYGLPTLGLAVSIMIFLTGTRFYRHKVPAGSPFTRMVKVIVAALKKWHVPVPSDPKEFYELELEVYTKKGKFRIDSTPSLRFFNKACVKTGPTDEWTLSTVTQVEETKQMLRMIPILFATFIPSTMIAQINTLFVKQGTTLERNIGSFKIPPASLAGFVTLSMLICVVLYDRVFVKVIRKWTNNPRGITILQRMGIGMTFHIVIMTVASLMERYRLSVAKDHGVVESGEQVPLTIFVLLPQFILMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSTTSLGIGSFFSSFLLTTVSHITKKNEHKGWILNNLNASHLDYYYAFFAILNFLNFIFFLVVSRYYVYKAEVSDSMEVLGEELRESR--RSEQESSR 571
A E G DDYTQDGTVDL+ VYE+FERMAYYGISSNL+LYLTRKLHQGTV ++NNVTNWVGTIW+TP+LGAY+ADAHLGRYWTFV AS IY+TGM +LTL+VSIPGLKPP C +I +C+KASTLQLA F+GALYTL IGTGGTKPNISTIGADQFDDF PKEKA KLSFFNWWMFSIF GTLFANTVLVYIQDNVGWTLGYGLPTLGL +S+MIFL GT FYRH+VPAGSPFT+M VIVAA +KW VP+PSDPKE +EL+LE Y + GKF I STP+LRF NKA VKTG TD W LS VTQVEETKQMLRMIPIL ATF+PSTMIAQINTLF+KQGTTL+R+IG+FKIPPASLAGFVT+SML+CVVLYDR FV VIRKWTNNPRGIT+LQRMGIG+ H VIM VASL ERYRL+VAK HG+VE+G Q+PLTIF+LLPQF+LMGTADAFLEVAK+EFFYDQAPESMKSLGTSYS+TSLGIG+F SSFLL+TVS IT+++ H+GWILNNLN SHLDYYYAFFA+LNFLNFIFF+ + R+YVYKAEVSDSM VL EEL+ R S QE+++
Sbjct: 2 AVEEGIDDYTQDGTVDLKGNPVRRSKRGGWTACSFVVVYEVFERMAYYGISSNLVLYLTRKLHQGTVKSANNVTNWVGTIWITPILGAYVADAHLGRYWTFVFASLIYVTGMSLLTLSVSIPGLKPPPCHQANIDDCKKASTLQLATFFGALYTLAIGTGGTKPNISTIGADQFDDFHPKEKASKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYGLPTLGLVISVMIFLAGTPFYRHRVPAGSPFTKMAMVIVAAARKWRVPLPSDPKELHELDLEEYARNGKFMIGSTPTLRFLNKAAVKTGSTDPWMLSAVTQVEETKQMLRMIPILIATFVPSTMIAQINTLFIKQGTTLDRHIGNFKIPPASLAGFVTISMLVCVVLYDRFFVPVIRKWTNNPRGITLLQRMGIGLVLHFVIMAVASLTERYRLNVAKQHGLVENGGQLPLTIFILLPQFVLMGTADAFLEVAKLEFFYDQAPESMKSLGTSYSSTSLGIGNFLSSFLLSTVSDITQRDGHEGWILNNLNKSHLDYYYAFFAVLNFLNFIFFMAMIRFYVYKAEVSDSMHVLTEELKVMRLKASNQEAAK 591
BLAST of DCAR_027334 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4P8H4 ((protein NRT1/ PTR FAMILY 5.2-like {ECO:0000313|RefSeq:XP_017631962.1}))
HSP 1 Score: 952.97 bits (2462), Expect = 0.000e+0
Identity = 455/590 (77.12%), Postives = 511/590 (86.61%), Query Frame = 0
Match: A0A6P4P8H4 ((protein NRT1/ PTR FAMILY 5.2-like {ECO:0000313|RefSeq:XP_017631962.1}))
HSP 1 Score: 952.97 bits (2462), Expect = 0.000e+0
Identity = 455/590 (77.12%), Postives = 511/590 (86.61%), Query Frame = 0
Query: 3 AEETGHDDYTQDGTVDLR-------------------VYEIFERMAYYGISSNLILYLTRKLHQGTVTASNNVTNWVGTIWMTPVLGAYIADAHLGRYWTFVIASAIYLTGMVVLTLTVSIPGLKPPKCVDPDISNCEKASTLQLALFYGALYTLTIGTGGTKPNISTIGADQFDDFDPKEKAHKLSFFNWWMFSIFLGTLFANTVLVYIQDNVGWTLGYGLPTLGLAVSIMIFLTGTRFYRHKVPAGSPFTRMVKVIVAALKKWHVPVPSDPKEFYELELEVYTKKGKFRIDSTPSLRFFNKACVKTGPTDEWTLSTVTQVEETKQMLRMIPILFATFIPSTMIAQINTLFVKQGTTLERNIGSFKIPPASLAGFVTLSMLICVVLYDRVFVKVIRKWTNNPRGITILQRMGIGMTFHIVIMTVASLMERYRLSVAKDHGVVESGEQVPLTIFVLLPQFILMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSTTSLGIGSFFSSFLLTTVSHITKKNEHKGWILNNLNASHLDYYYAFFAILNFLNFIFFLVVSRYYVYKAEVSDSMEVLGEELRESR--RSEQESSR 571
A E G DDYTQDGTVDL+ VYE+FERMAYYGISSNL+LYLTRKLHQGTV ++NNVTNWVGTIW+TP+LGAY+ADAHLGRYWTFV AS IY+TGM +LTL+VSIPGLKPP C +I +C+KASTLQLA F+GALYTL IGTGGTKPNISTIGADQFDDF PKEKA KLSFFNWWMFSIF GTLFANTVLVYIQDNVGWTLGYGLPTLGL +S+MIFL GT FYRH+VPAGSPFT+M VIVAA +KW VP+PSDPKE +EL+LE Y + GKF I STP+LRF NKA VKTG TD W LS VTQVEETKQMLRMIPIL ATF+PSTMIAQINTLF+KQGTTL+R+IG+FKIPPASLAGFVT+SML+CVVLYDR FV VIRKWTNNPRGIT+LQRMGIG+ H VIM VASL ERYRL+VAK HG+VE+G Q+PLTIF+LLPQF+LMGTADAFLEVAK+EFFYDQAPESMKSLGTSYS+TSLGIG+F SSFLL+TVS IT+++ H+GWILNNLN SHLDYYYAFFA+LNFLNFIFF+ + R+YVYKAEVSDSM VL EEL+ R S QE+++
Sbjct: 2 AVEEGIDDYTQDGTVDLKGNPVRRSKRGGWTACSFVVVYEVFERMAYYGISSNLVLYLTRKLHQGTVKSANNVTNWVGTIWITPILGAYVADAHLGRYWTFVFASLIYVTGMSLLTLSVSIPGLKPPPCHQANIDDCKKASTLQLATFFGALYTLAIGTGGTKPNISTIGADQFDDFHPKEKASKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYGLPTLGLVISVMIFLAGTPFYRHRVPAGSPFTKMAMVIVAATRKWRVPLPSDPKELHELDLEEYARNGKFMIGSTPTLRFLNKAAVKTGSTDPWMLSAVTQVEETKQMLRMIPILIATFVPSTMIAQINTLFIKQGTTLDRHIGNFKIPPASLAGFVTISMLVCVVLYDRFFVPVIRKWTNNPRGITLLQRMGIGLVLHFVIMAVASLTERYRLNVAKQHGLVENGGQLPLTIFILLPQFVLMGTADAFLEVAKLEFFYDQAPESMKSLGTSYSSTSLGIGNFLSSFLLSTVSDITQRDGHEGWILNNLNKSHLDYYYAFFAVLNFLNFIFFMAMIRFYVYKAEVSDSMHVLTEELKVMRLKASNQEAAK 591
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5C0U9 | E-Value: 0.000e+0, PID: 80.17 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8548... [more] |
| D7SZL3 | E-Value: 0.000e+0, PID: 78.91 | (Uncharacterized protein {ECO:0000313|EMBL:CBI2369... [more] |
| A5BCA6 | E-Value: 0.000e+0, PID: 80.53 | (Uncharacterized protein {ECO:0000313|EMBL:CAN6333... [more] |
| A0A5B6ZT67 | E-Value: 0.000e+0, PID: 77.83 | (Uncharacterized protein {ECO:0000313|EMBL:MPA4673... [more] |
| A0A2R6R8N5 | E-Value: 0.000e+0, PID: 77.59 | (Protein NRT1/ PTR FAMILY 5.2 like {ECO:0000313|EM... [more] |
| A0A834H665 | E-Value: 0.000e+0, PID: 78.40 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7146... [more] |
| B9HSR8 | E-Value: 0.000e+0, PID: 77.11 | (Uncharacterized protein {ECO:0000313|EMBL:PNT1512... [more] |
| A0A5N6RE66 | E-Value: 0.000e+0, PID: 76.73 | (Uncharacterized protein {ECO:0000313|EMBL:KAE8076... [more] |
| A0A5D3A616 | E-Value: 0.000e+0, PID: 77.12 | (Uncharacterized protein {ECO:0000313|EMBL:TYJ4534... [more] |
| A0A6P4P8H4 | E-Value: 0.000e+0, PID: 77.12 | (protein NRT1/ PTR FAMILY 5.2-like {ECO:0000313|Re... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |