MYYYSGGYTAPNYQFPLMGRSNFGYQNQGWGAVRPPVAVHEPAVFVEEQQ
AKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITIIYFAKEE
PNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVDYPSKLE
EDVLPLVISAETYLPSLLADEQSSDHPPNPSPRRQITQAVLEEKDGEPFI
VRVIKQILWIDDVRYELREIYGIGNSGEAISGNDSGKECVICMTEPKNTA
VLPCRHMLGKCLAECKSFVFEAPIPRMQIDVIDNVTRMNYLYPVELSQVS
TICLCSECAKTLRLQSNKCPICRQPIEELMEIKIDNDGQ*
| Relationships |
|---|
| The polypeptide, DCAR_027153, derives from mRNA, DCAR_027153. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: A0A5B7B8J4 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089} (Fragment))
HSP 1 Score: 384.8 bits (987), Expect = 3.595e-130
Identity = 206/349 (59.03%), Postives = 239/349 (68.48%), Query Frame = 0
Query: 2 YYYSGGYTAPNYQFPLMGRSNFG----YQNQGWGAVRPPVAVHEPAV----FVEEQQAKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITIIYFAKEEPNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVDYPSKLE--EDVLPLVISAETYLPSLLADEQSSDHPPNPSPRRQITQAVLEEKDGEPFIVRVIKQILWIDDVRYELREIYGIGN-SGEAISGNDSGKECVICMTEPKNTAVLPCRHMLGKCLAECKSFVFEAPIPRMQIDVIDNVTRMNYLYPVELSQVSTICLCSECAKTLRLQSNKCPICRQPIEELMEIKIDNDGQ 339
YY SGGYTA NY P+MGRSNFG YQ GW +RPP V P + +V+ QQAKKVRNDVNVHKDT++L VDE +PD +L++F+FDA+ DGSIT+ YFAKEEPNCK P+FPE++ PVK+PFQKG GQKFRQPS TGIDL FF ++ SK EDV PLVISAET PSL DE SD PPN SP QITQAV+E+ + +PF VRVI+QILWID VRYELREIYGI N S E+ + NDSGK CVICMTEPK+TAVLPCRHM C+CSECAK LRLQSNKCPICRQ IEEL+EIK+++ Q
Sbjct: 117 YYNSGGYTACNYANPIMGRSNFGPYYAYQTNGWAGIRPPPVVGPPPLPPPPYVDHQQAKKVRNDVNVHKDTLRLEVDEQNPDHHLVSFVFDAVLDGSITVFYFAKEEPNCKFAPLFPEAFMPVKIPFQKGVGQKFRQPSGTGIDLGFFTLEDLSKQSPGEDVFPLVISAETSSPSLPTDEHLSDPPPNSSPHVQITQAVMEKNNEDPFQVRVIRQILWIDGVRYELREIYGIRNSSAESFNDNDSGKVCVICMTEPKDTAVLPCRHM---------------------------------------------CMCSECAKALRLQSNKCPICRQSIEELLEIKVNSVDQ 420
Match: F6HDL6 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 369.777 bits (948), Expect = 1.115e-124
Identity = 205/346 (59.25%), Postives = 234/346 (67.63%), Query Frame = 0
Query: 2 YYYSGGYTAPNYQFPLMGRSNFG--YQNQG--WGAVRPPVAVHEPAV---FVEEQQAKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITIIYFAKEEPNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVDYPSKLE--EDVLPLVISAETYLPSLLADEQSSDHPPNPSPRRQITQAVLEEKDGEPFIVRVIKQILWIDDVRYELREIYGIGNSG-EAISGNDSGKECVICMTEPKNTAVLPCRHMLGKCLAECKSFVFEAPIPRMQIDVIDNVTRMNYLYPVELSQVSTICLCSECAKTLRLQSNKCPICRQPIEELMEIKIDND 337
YY SG Y + NY P+M RSN+ Y N G W +RPPVA P +VE Q AKKVRNDVNVHKDT++L VDE +PD YL++FIFDA+FDGSITI YFAKEE NC+ P+FPE+Y PV++PFQKG GQKFRQPS TGIDL FF +D SK EDV PLVISAET LP DE S D P SP QITQAVLE+ +G+PF VRVI+QILW+++VRYELREIYGI +S E + NDSGKECVICMTEPK+TAVLPCRHM C+CSECAK LRLQSNKCPICRQPIEEL+EIKIDND
Sbjct: 91 YYCSGPYNSCNYANPMMARSNYQPYYANHGNYWPPIRPPVAAPPPQQPPPYVEHQNAKKVRNDVNVHKDTLRLEVDEQNPDHYLVSFIFDALFDGSITIYYFAKEESNCRFSPLFPEAYMPVRIPFQKGPGQKFRQPSGTGIDLGFFELDDLSKPSPGEDVFPLVISAETSLPLHPTDEHSGDPTPRTSPHMQITQAVLEKHNGDPFQVRVIRQILWVNEVRYELREIYGIASSASEGFNDNDSGKECVICMTEPKDTAVLPCRHM---------------------------------------------CMCSECAKELRLQSNKCPICRQPIEELIEIKIDND 391
Match: A0A6A1VUB6 ((Putative E3 ubiquitin-protein ligase LUL3 {ECO:0000313|EMBL:KAB1214250.1}))
HSP 1 Score: 366.696 bits (940), Expect = 9.681e-124
Identity = 194/346 (56.07%), Postives = 230/346 (66.47%), Query Frame = 0
Query: 2 YYYSGGYTAPNYQFPLMGRSNF----GYQNQGWGAVRPPVA-VHEPAVFVEEQQAKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITIIYFAKEEPNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVDYPSKLE--EDVLPLVISAETYLPSLLADEQSSDHPPNPSPRRQITQAVLEEKDGEPFIVRVIKQILWIDDVRYELREIYGIGNSG-EAISGNDSGKECVICMTEPKNTAVLPCRHMLGKCLAECKSFVFEAPIPRMQIDVIDNVTRMNYLYPVELSQVSTICLCSECAKTLRLQSNKCPICRQPIEELMEIKIDNDGQ 339
YYY+GGY + NY P+ R N+ Q GW A R V EP +VE Q AKKVRNDVNVHKDT++LVVDE +PD L++F+FDA++DGSIT+ YFAKEE NC VP+FPE++ PVK+PFQKG GQKF QPS TGIDL FF ++ SK EDV PLVISAET P L D+ + P+ SP QITQA+LE+ EPF VRVI+QILWID+VRYELREIYGIG+S E+ + +D+GKECVICMTEPK+TAVLPCRHM CLCSECAK LRLQSNKCPICRQPIEEL+EIKI+N +
Sbjct: 78 YYYTGGYHSCNYANPMTARFNYHPYHSNQANGWPAARSAVGPAVEPPRYVEHQNAKKVRNDVNVHKDTLRLVVDEHNPDHLLVSFVFDALYDGSITVFYFAKEESNCSFVPLFPEAFMPVKIPFQKGLGQKFCQPSGTGIDLGFFELEDLSKPSPAEDVFPLVISAETCEPPLSTDKNLCETAPSTSPHMQITQAILEKNGDEPFQVRVIRQILWIDEVRYELREIYGIGSSDTESFNDDDAGKECVICMTEPKDTAVLPCRHM---------------------------------------------CLCSECAKALRLQSNKCPICRQPIEELIEIKINNSDE 378
Match: A0A5J5C051 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8548589.1}))
HSP 1 Score: 375.941 bits (964), Expect = 1.314e-121
Identity = 202/347 (58.21%), Postives = 234/347 (67.44%), Query Frame = 0
Query: 2 YYYSGGYTAPNYQFPLMGRSNFG----YQNQGWGAVRPPVAVHEPAV-------FVEEQQAKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITIIYFAKEEPNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVDYPSKLE--EDVLPLVISAETYLPSLLADEQSSDHPPNPSPRRQITQAVLEEKDGEPFIVRVIKQILWIDDVRYELREIYGIGN-SGEAISGNDSGKECVICMTEPKNTAVLPCRHMLGKCLAECKSFVFEAPIPRMQIDVIDNVTRMNYLYPVELSQVSTICLCSECAKTLRLQSNKCPICRQPIEELMEIKI 334
YY SGGY+A NY P+MGRSNFG YQN GW +RPP V P + +V+ QQAKKVRNDVNVHKDT++L VDE +PD YL++F+FDA+ DGSIT+ YFAKEE CK P+FPE++ PVK+PFQKG GQKFRQPS TGIDL FF ++ SK EDV PLVISAET P L DE S+ PPN SP QITQAV+E+ + +PF VRVI+QILWID VRYELREIYGI N S E+ + NDSGKECVICMTEPK+TAVLPCRHM C+CSECAK LRLQSNKCPICRQ I+EL+EIK
Sbjct: 83 YYNSGGYSACNYANPIMGRSNFGPHYAYQNNGWAGIRPPPVVGPPPLPPLPPPPYVDHQQAKKVRNDVNVHKDTLRLEVDEQNPDHYLVSFVFDALLDGSITVFYFAKEESTCKFAPLFPEAFMPVKIPFQKGLGQKFRQPSGTGIDLGFFTLEDLSKQSTGEDVFPLVISAETGSP-LPTDEHLSNPPPNASPHMQITQAVIEKNNEDPFQVRVIRQILWIDGVRYELREIYGIRNSSAESFNDNDSGKECVICMTEPKDTAVLPCRHM---------------------------------------------CMCSECAKALRLQSNKCPICRQSIDELLEIKT 383
Match: A0A6J1CBY6 ((probable E3 ubiquitin-protein ligase LUL4 {ECO:0000313|RefSeq:XP_022138033.1}))
HSP 1 Score: 359.762 bits (922), Expect = 4.881e-121
Identity = 193/349 (55.30%), Postives = 232/349 (66.48%), Query Frame = 0
Query: 2 YYYSGGYTAPNYQFPLMGRSNFG--YQNQ--GWGAVRPPVAVHEPAV----FVEEQQAKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITIIYFAKEEPNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVDYPSKLE--EDVLPLVISAETYLPSLLADEQSSDHPPNPSPRRQITQAVLEEKDGEPFIVRVIKQILWIDDVRYELREIYGIG-NSGEAISGNDSGKECVICMTEPKNTAVLPCRHMLGKCLAECKSFVFEAPIPRMQIDVIDNVTRMNYLYPVELSQVSTICLCSECAKTLRLQSNKCPICRQPIEELMEIKIDNDGQ 339
YY+SGGY + NY MGR NF Y NQ GW +RP + FVE +QAKKVRNDVNVHKDT+++ VDE +PDR+L++F+FDA++DGSITI++FAKEE NC+ VPV+PE++KPV++PFQKG QKF QP TG DL FF +D SK ED+ PLVISAET PS DE+ + P+ S QITQAVLE+K+G PF VRVI+Q+LWID VRYELREI+GIG +S E ND+GKECVICMTEPK+TAVLPCRHM C+CSECAK LRLQSNKCPICRQPIEEL+EIKI+N Q
Sbjct: 72 YYFSGGYNSCNYAASTMGRFNFHPYYANQSNGWSQIRPAMGPPLLPPPPLPFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDRHLVSFVFDALYDGSITILFFAKEELNCRFVPVYPEAFKPVRIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPAEDIFPLVISAETCSPSQSNDERIGEPQPDNS-HMQITQAVLEKKNGGPFQVRVIRQLLWIDGVRYELREIFGIGSSSAEGFDDNDTGKECVICMTEPKDTAVLPCRHM---------------------------------------------CMCSECAKELRLQSNKCPICRQPIEELIEIKINNSDQ 374
Match: A0A2R6RV61 ((E3 ubiquitin-protein like {ECO:0000313|EMBL:PSS33898.1}))
HSP 1 Score: 358.221 bits (918), Expect = 2.270e-120
Identity = 198/354 (55.93%), Postives = 231/354 (65.25%), Query Frame = 0
Query: 1 MYYYSGGYTAPNYQFPLMGRSNFG----YQNQGWGAVRPPVAVHEPAV------FVEEQQAKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITIIYFAKEEPNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVDYPSKLE--EDVLPLVISAETYLPSLLADEQSSD--HPPNPSPRRQITQAVLEEKDGEPFIVRVIKQILWIDDVRYELREIYGIGN-SGEAISGNDSGKECVICMTEPKNTAVLPCRHMLGKCLAECKSFVFEAPIPRMQIDVIDNVTRMNYLYPVELSQVSTICLCSECAKTLRLQSNKCPICRQPIEELMEIKIDNDGQ 339
+YYYSGGY A NY + GR NF YQN GW +RPP P +V QQAKKVRNDVNVHKDT++L VDE +PD +L++F+FDA+FDGS TI+YFAKEEPNC+ VP+FPE Y P KVPFQKG GQKF QPS TGIDL FF +D S+ EDV PLVISAET+ PS+ A+EQ D + SP QITQAV+++ + F +RVI+QILWID+VRYELREIYGIGN S E+ +D GKECVICMTEPK+TAVLPCRHM C+CSECAK LRLQSNKCPICRQP EEL+EIKID Q
Sbjct: 66 IYYYSGGYNACNYPNHMAGRGNFAPYGPYQNNGWALIRPPQPQPLPQPQQPPPPYVHHQQAKKVRNDVNVHKDTLRLEVDEQNPDHHLVSFVFDALFDGSFTILYFAKEEPNCRFVPLFPEEYIPAKVPFQKGIGQKFCQPSGTGIDLGFFELDELSRPSSGEDVFPLVISAETFSPSVTAEEQLGDPPPSSSSSPHMQITQAVIQKNNDNTFQMRVIRQILWIDEVRYELREIYGIGNSSAESFKDDDPGKECVICMTEPKDTAVLPCRHM---------------------------------------------CMCSECAKALRLQSNKCPICRQPFEELIEIKIDRADQ 374
Match: A0A834YNJ1 ((Uncharacterized protein {ECO:0000313|EMBL:KAF8392474.1}))
HSP 1 Score: 353.984 bits (907), Expect = 1.448e-119
Identity = 194/343 (56.56%), Postives = 224/343 (65.31%), Query Frame = 0
Query: 2 YYYSGGYTAPNYQFPLM-GRSNF----GYQNQGWGAVRPP-VAVHEPAVFVEEQQAKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITIIYFAKEEPNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVDYPSKLE--EDVLPLVISAETYLPSLLADEQSSDHPPNPSPRRQITQAVLEEKDGEPFIVRVIKQILWIDDVRYELREIYGIGNSGEA-ISGNDSGKECVICMTEPKNTAVLPCRHMLGKCLAECKSFVFEAPIPRMQIDVIDNVTRMNYLYPVELSQVSTICLCSECAKTLRLQSNKCPICRQPIEELMEIKID 335
+ YSGGY A Y P+M GRSNF Q+ GW +R P V +P ++V+ Q AKKVRNDVNVHKDTIK+ VDE +P+ +L++F FDAM DGSITI YFAKEEP+C+ P++PE V++PFQKG GQKF QPS TGIDL FF +D SK EDV PLVISAET LPSL DE P S QITQAVL + +G PF VRVIKQILW+D VRYELREIYGIGNS EA ND GKECVIC+TEPK+TAVLPCRHM C+CSECAK LRLQSNKCPICRQPI+EL+EIKI+
Sbjct: 15 FQYSGGYNASGYAAPMMMGRSNFPPYYANQSNGWPPIRSPMVPPQQPPLYVDHQNAKKVRNDVNVHKDTIKVEVDEKNPEYHLVSFTFDAMVDGSITIFYFAKEEPDCRFTPLYPEVCMAVRIPFQKGLGQKFCQPSGTGIDLGFFELDDLSKPSPGEDVFPLVISAETCLPSLPTDEHIGHPLPITSSHAQITQAVLAKNNGAPFQVRVIKQILWVDGVRYELREIYGIGNSAEADFDDNDPGKECVICLTEPKDTAVLPCRHM---------------------------------------------CMCSECAKALRLQSNKCPICRQPIQELIEIKIN 312
Match: A0A6P4A3R4 ((probable E3 ubiquitin-protein ligase LUL4 {ECO:0000313|RefSeq:XP_015888311.1}))
HSP 1 Score: 356.681 bits (914), Expect = 1.522e-119
Identity = 195/347 (56.20%), Postives = 231/347 (66.57%), Query Frame = 0
Query: 2 YYYSGGYTAPNYQFPLMGRSNFG---YQNQG---WGAVRPPVAVHE-----PAVFVEEQQAKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITIIYFAKEEPNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVDYPSKLE--EDVLPLVISAETYLPSLLADEQSSDHPPNPSPRRQITQAVLEEKDGEPFIVRVIKQILWIDDVRYELREIYGIGNSG-EAISGNDSGKECVICMTEPKNTAVLPCRHMLGKCLAECKSFVFEAPIPRMQIDVIDNVTRMNYLYPVELSQVSTICLCSECAKTLRLQSNKCPICRQPIEELMEIKI 334
+Y SGGY A NY +MGR N+ Y NQ W + RPP+ + P +VE Q AKKVRNDVNVHKDT++L VDE +PD++L++F+FDA++DGSITI YFAKEEPNCK VP++P++Y PVK+ FQKG GQKFRQPS TGIDL FF +D +K EDV PLVISAET LP L DE S+ + SP QITQAVLE+ +G+PF VRVI+QILWID VRYELREI+GIG+S E ND GKECVICMTEPK+TAVLPCRHM C+C ECA+ LRLQSNKCPICRQPIEEL+EIKI
Sbjct: 94 HYCSGGYCAHNYGNSVMGRFNYPPPYYANQAGGVWPSFRPPMGQQQQPLTVPPPYVEHQNAKKVRNDVNVHKDTLRLEVDEQNPDQHLVSFVFDALYDGSITIFYFAKEEPNCKFVPLYPDAYMPVKISFQKGLGQKFRQPSGTGIDLGFFELDDLAKPSPGEDVYPLVISAETSLPPDL-DEHVSETMQDTSPHMQITQAVLEKNNGDPFQVRVIRQILWIDGVRYELREIFGIGSSAVEGFDDNDPGKECVICMTEPKDTAVLPCRHM---------------------------------------------CMCRECAQELRLQSNKCPICRQPIEELIEIKI 394
Match: A0A5N6RDT2 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089})
HSP 1 Score: 355.525 bits (911), Expect = 3.217e-119
Identity = 196/348 (56.32%), Postives = 228/348 (65.52%), Query Frame = 0
Query: 2 YYYSGGYTAPNYQFPLMGRSNFGYQ----NQ--GWGAVRPPVA-VHEPAVFVEEQQAKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITIIYFAKEEPNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVDYPSKLE--EDVLPLVISAETYLPSLLADEQSSDHPPNPSPRRQITQAVLEEKDGEPFIVRVIKQILWIDDVRYELREIYGIGNS-GEAISGNDSGKECVICMTEPKNTAVLPCRHMLGKCLAECKSFVFEAPIPRMQIDVIDNVTRMNYLYPVELSQVSTICLCSECAKTLRLQSNKCPICRQPIEELMEIKIDNDGQ 339
Y YSGGY + Y P+ R F YQ NQ GW A RPPV +P +VE Q AKKV+NDVNVHKDT+++VVDE +PD +L++F+FDAM+DGSITI YFAKEE NC+ VP FP+++ PV++PFQKG GQKF QPS TGIDL FF +D SK EDV PLVISAET LP +E + PN P QITQA+LE+ + EPF VRVIKQILWID VRYELREIYGIG+S E +D GKECVICMTEPK+TAVLPCRHM C+CSECAK LR+QSNKCPICRQPIEEL+EIKI N Q
Sbjct: 82 YIYSGGYNS-CYANPITSR--FAYQPYHANQANGWLAPRPPVGPAVDPPRYVEHQSAKKVKNDVNVHKDTLRVVVDEQNPDHHLVSFVFDAMYDGSITIFYFAKEEANCRFVPAFPQAFMPVRIPFQKGHGQKFVQPSGTGIDLGFFELDDLSKPSPGEDVFPLVISAETCLPPHSTEEHLGEPVPNADPHTQITQAILEKNNEEPFRVRVIKQILWIDGVRYELREIYGIGSSVVEDFGDSDPGKECVICMTEPKDTAVLPCRHM---------------------------------------------CMCSECAKALRMQSNKCPICRQPIEELLEIKIKNGDQ 381
Match: A0A5B7B8I2 (RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089} (Fragment))
HSP 1 Score: 353.984 bits (907), Expect = 5.909e-119
Identity = 194/337 (57.57%), Postives = 228/337 (67.66%), Query Frame = 0
Query: 10 APNYQFPLMGRSNFG----YQNQGWGAVRPPVAVHEPAVFVEEQQAKKVRNDVNVHKDTIKLVVDEDDPDRYLITFIFDAMFDGSITIIYFAKEEPNCKIVPVFPESYKPVKVPFQKGAGQKFRQPSRTGIDLAFFGVDYPSKLE--EDVLPLVISAETYLPSLLADEQSSDHPPNPSPRRQITQAVLEEKDGEPFIVRVIKQILWIDDVRYELREIYGIGNS-GEAISGNDSGKECVICMTEPKNTAVLPCRHMLGKCLAECKSFVFEAPIPRMQIDVIDNVTRMNYLYPVELSQVSTICLCSECAKTLRLQSNKCPICRQPIEELMEIKIDNDGQ 339
A NY P+MG SNFG YQ GW +RPP V P +V+ QQAKKVRNDVNVHKDT++L VDE +PD +L++FIFDA+ DGSITI YFAKEE +C+ VP+F E++ PVK+PFQKG QKF QPS TGIDL FF ++ SK EDV PLVI AET LPSL DE SDHPP+ S QITQAV+E+ +PF VRVI+Q+LWID VRYELREIYGIGNS E+ + ND+GKECVICMTEPK+TAVLPCRHM C+CSECAK LRLQSNKCPICRQ IEEL+EIK+++ Q
Sbjct: 65 ACNYADPMMGPSNFGPYYAYQTNGWTGIRPPSVVGPPPPYVDHQQAKKVRNDVNVHKDTLRLDVDEQNPDHHLVSFIFDALLDGSITIYYFAKEELDCRFVPLFSEAFMPVKIPFQKGLAQKFCQPSGTGIDLGFFDLEDLSKQSPGEDVFPLVIYAETCLPSLPTDEYLSDHPPHSSRHVQITQAVIEKNYEDPFQVRVIRQVLWIDKVRYELREIYGIGNSAAESSNDNDAGKECVICMTEPKDTAVLPCRHM---------------------------------------------CMCSECAKALRLQSNKCPICRQSIEELIEIKVNSIDQ 356
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7B8J4 | E-Value: 3.595e-130, PID: 59.03 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| F6HDL6 | E-Value: 1.115e-124, PID: 59.25 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| A0A6A1VUB6 | E-Value: 9.681e-124, PID: 56.07 | (Putative E3 ubiquitin-protein ligase LUL3 {ECO:00... [more] |
| A0A5J5C051 | E-Value: 1.314e-121, PID: 58.21 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8548... [more] |
| A0A6J1CBY6 | E-Value: 4.881e-121, PID: 55.30 | (probable E3 ubiquitin-protein ligase LUL4 {ECO:00... [more] |
| A0A2R6RV61 | E-Value: 2.270e-120, PID: 55.93 | (E3 ubiquitin-protein like {ECO:0000313|EMBL:PSS33... [more] |
| A0A834YNJ1 | E-Value: 1.448e-119, PID: 56.56 | (Uncharacterized protein {ECO:0000313|EMBL:KAF8392... [more] |
| A0A6P4A3R4 | E-Value: 1.522e-119, PID: 56.20 | (probable E3 ubiquitin-protein ligase LUL4 {ECO:00... [more] |
| A0A5N6RDT2 | E-Value: 3.217e-119, PID: 56.32 | RING-type domain-containing protein {ECO:0000259|P... [more] |
| A0A5B7B8I2 | E-Value: 5.909e-119, PID: 57.57 | RING-type domain-containing protein {ECO:0000259|P... [more] |
Pages
back to top| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |