Resource Type:
Polypeptide
Name:
DCAR_027819
Identifier:
DCAR_027819.mRNA-protein
Sequence:
MEMEPGKLFIGGISWDTNEDRLKEYFQTFGEVVEAVIMKDRTTGRARGFG
FVVFADPAVAEGVVKDKHMIDGRTVEAKKAVPRDDQQTPNRISGSVQGSP
VPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFG
FITYDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIRSQLSGQNY
GLSRVSNLLNAYTQGYSPSPGGGYGLRMDGRFSPAAVGRSGYSSLSSGYG
LGSYFEPGLGSNLEGSAHLGSNISYARGLDAFQNGSPNRYGSPVGHGIAG
TGSVLNTMNWNTWGDGGLNYTKNLTNSAEFMGSGSANTGLVNALGNIGAI
WGSSPISGQDRGIGSAFSNENINYGNAENSFELGGLGYARNTRGNMAPSP
ISSFGAANSAYEGSFGNFHGSGSVFGDTTWRSASPDLEGPRTFDYDLRTA
VSEVTPKNAVGYVGGYSVTNRANRGM*
Sequence Length:
477
Sequence Checksum:
e6a1153c8a8374d354c0cbca398f0601
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_027819, derives from mRNA, DCAR_027819. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_027819 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_027819 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5B3J3 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8537289.1}))
HSP 1 Score: 632.098 bits (1629), Expect = 0.000e+0
Identity = 334/478 (69.87%), Postives = 389/478 (81.38%), Query Frame = 0
Match: A0A5J5B3J3 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8537289.1}))
HSP 1 Score: 632.098 bits (1629), Expect = 0.000e+0
Identity = 334/478 (69.87%), Postives = 389/478 (81.38%), Query Frame = 0
Query: 1 MEMEPGKLFIGGISWDTNEDRLKEYFQTFGEVVEAVIMKDRTTGRARGFGFVVFADPAVAEGVVKDKHMIDGRTVEAKKAVPRDDQQTPNRISGSVQGSPVPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIRSQLSGQNYGLSRVSNLLNAYTQGYSPSPGGGYGLRMDGRFSPAAVGRSGYSSLS-SGYGLGSYFEPGLGSNLEGSAHLGSNISYARGLDAFQNGSPNRYGSPV--GHGIAGTGSVLNTMNWNTWGDGGLNYTKNLTNSAEFMGSGSANTGLVNALGNIGAIWGSSPISGQDRGIGSAFSNENINYGNAENSFELGGLGYARNTRGNMAPSPISSFGAANSAYEGSFGNFHGSGSVFGDTTWRSASPDLEGPRTFDYDLRTAVSEVTPKNAVGYVGGYSVTNRANRG 475
+EMEPGKLFIGGISWDTNEDRL++YFQ FGEVVEAVIMKDRTTGRARGFGFVVFADP VAE VV +KHMIDGR+VEAKKAVPRDDQ +R +GS+QGSP P RTKKIFVGGLASTVTESDFK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE V++VLL+TFHELNGKMVEVKRAVPKELSPG RS L G N GL+RVS+ LNAYTQGY+PS GGYG+RMDGRFSP VGRSG+ S SGYG+G F+PG S+ GS + SN+SY RGL+ F +GS NRY SP+ G GTGSVL++ + + WG+G LNYT + NS++FMGSGS NTGLV ALG+IGAIWGSSP+SGQ G SA+++ NI+YG ++NSF GG GYARN+ + AP+ SS+ +N +G+ GNFHGSGS +GD TWR +SP+LEG +F Y L + S+V P+N GYVGGYSVTNR+NRG
Sbjct: 10 LEMEPGKLFIGGISWDTNEDRLRDYFQVFGEVVEAVIMKDRTTGRARGFGFVVFADPVVAERVVMEKHMIDGRSVEAKKAVPRDDQHIMSRNNGSIQGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEPVEKVLLKTFHELNGKMVEVKRAVPKELSPGPTRSLLGGYNSGLNRVSSFLNAYTQGYNPSSVGGYGVRMDGRFSPVTVGRSGFPPFSPSGYGMGLNFDPGSSSSYGGSGNFSSNLSYGRGLNPFYSGSSNRYISPIGYGGDSGGTGSVLSSTSRSMWGNGSLNYTTSSANSSDFMGSGSGNTGLVGALGSIGAIWGSSPMSGQVGGTDSAYTSGNISYGTSDNSFGSGGGGYARNSGSSAAPT--SSYAPSNDGLDGALGNFHGSGSFYGDPTWRISSPELEGSGSFGYGLGNSASDVIPRNPAGYVGGYSVTNRSNRG 485
BLAST of DCAR_027819 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6A4LDZ5 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9452748.1}) (Fragment))
HSP 1 Score: 593.193 bits (1528), Expect = 0.000e+0
Identity = 311/478 (65.06%), Postives = 370/478 (77.41%), Query Frame = 0
Match: A0A6A4LDZ5 ((Uncharacterized protein {ECO:0000313|EMBL:KAE9452748.1}) (Fragment))
HSP 1 Score: 593.193 bits (1528), Expect = 0.000e+0
Identity = 311/478 (65.06%), Postives = 370/478 (77.41%), Query Frame = 0
Query: 1 MEMEPGKLFIGGISWDTNEDRLKEYFQTFGEVVEAVIMKDRTTGRARGFGFVVFADPAVAEGVVKDKHMIDGRTVEAKKAVPRDDQQTPNRISGSVQGSPVPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIRSQLSGQNYGLSRVSNLLNAYTQGYSPSPGGGYGLRMDGRFSPAAVGRSGYSSL-SSGYGLGSYFEPGLGSNLEGSAHLGSNISYARGLDAFQNGSPNRYGSPVGH--GIAGTGSVLNTMNWNTWGDGGLNYTKNLTNSAEFMGSGSANTGLVNALGNIGAIWGSSPISGQDRGIGSAFSNENINYGNAENSFELGGLGYARNTRGNMAPSPISSFGAANSAYEGSFGNFHGSGSVFGDTTWRSASPDLEGPRTFDYDLRTAVSEVTPKNAVGYVGGYSVTNRANRG 475
M+MEPGK+FIGGISWDT+EDRL+EYF+ +G+V+EAVIMKDR TGRARGFGFVVFADPAVAE VV++KH+IDGRTVEAKKAVPRDDQ N+ +GS+QGSP P RTKKIFVGGLASTVTESDFKNYFDQFG ITDVVVMYDHNTQRPRGFGFITYDSE++VD+VL +TFHELNGKMVEVKRAVPKELSPG R+QL G + GLSRVS+ LNAYTQG SP+ GGYG+R+DGRFSP +VGRSGYS SGYG+ FEP L G+ + I Y RG + F N SPNRY SPVG+ GI+ TGS L + N W +G LNY N +NS + MGSGS +TGL A G+IG IWGSS ISGQ G S +S+ +I+Y N +NSF G GY RN ++AP+ + + A++ +G FGNF+G S+FGD +WRS+SP LEG TF Y L S++T +N+ GYVGGY+V NRAN G
Sbjct: 1 MQMEPGKVFIGGISWDTDEDRLREYFRNYGDVIEAVIMKDRNTGRARGFGFVVFADPAVAERVVREKHIIDGRTVEAKKAVPRDDQNVVNKNNGSLQGSPGPSRTKKIFVGGLASTVTESDFKNYFDQFGMITDVVVMYDHNTQRPRGFGFITYDSEDSVDKVLFKTFHELNGKMVEVKRAVPKELSPGPSRNQLGGYSNGLSRVSSFLNAYTQGNSPNSVGGYGVRLDGRFSPVSVGRSGYSPFRPSGYGMEPNFEPVLSPRYGGNGNSSPQIGYGRGWNPFYNSSPNRYDSPVGYGGGISVTGSGLTSAPRNIWANGNLNYASN-SNSNDLMGSGSGSTGLAGAFGSIGTIWGSSNISGQRGGTDSLYSSGSISYSNTDNSFGSGVGGYGRNNGNSVAPT-LWNGAASSDNLDGPFGNFYGDDSLFGDPSWRSSSPGLEGSGTFGYGLGKVASDITARNSAGYVGGYTVANRANGG 476
BLAST of DCAR_027819 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834HDT2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7151248.1}))
HSP 1 Score: 587.8 bits (1514), Expect = 0.000e+0
Identity = 309/478 (64.64%), Postives = 368/478 (76.99%), Query Frame = 0
Match: A0A834HDT2 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7151248.1}))
HSP 1 Score: 587.8 bits (1514), Expect = 0.000e+0
Identity = 309/478 (64.64%), Postives = 368/478 (76.99%), Query Frame = 0
Query: 1 MEMEPGKLFIGGISWDTNEDRLKEYFQTFGEVVEAVIMKDRTTGRARGFGFVVFADPAVAEGVVKDKHMIDGRTVEAKKAVPRDDQQTPNRISGSVQGSPVPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIRSQLSGQNYGLSRVSNLLNAYTQGYSPSPGGGYGLRMDGRFSPAAVGRSGYSSL-SSGYGLGSYFEPGLGSNLEGSAHLGSNISYARGLDAFQNGSPNRYGSPVGH--GIAGTGSVLNTMNWNTWGDGGLNYTKNLTNSAEFMGSGSANTGLVNALGNIGAIWGSSPISGQDRGIGSAFSNENINYGNAENSFELGGLGYARNTRGNMAPSPISSFGAANSAYEGSFGNFHGSGSVFGDTTWRSASPDLEGPRTFDYDLRTAVSEVTPKNAVGYVGGYSVTNRANRG 475
M+MEPGK+FIGGISWDT+EDRL+EYF+T+G+V+EAVIMKDR TGRARGFGFVVFADPAVAE VV++KH+IDGRTVEAKKAVPRDDQ N+ +GS+QGSP P RTKKIFVGGLASTVTESDFKNYFDQFG ITDVVVMYDHNTQRPRGFGFITYDSE++VD+VL +TFHELNGKMVEVKRAVPKELSPG R+QL G GLSRV++ LNAYTQG SP+ GGYG+R+DGRFSP +VGRSGYS S YG+ + FEP L G+ + I Y RG + F N SPNRY SPVG+ GI+ TGS L + N W +G LNY N +NS + MGSGS +TGL A G+IG IWGSS ISGQ G S +S+ I+Y N +NSF G GY RN ++AP+ + + A++ +G F NF+G S+FGD +WRS+SP LEG TF Y L S++T +N+ GYVGGY+V NRAN G
Sbjct: 1 MQMEPGKVFIGGISWDTDEDRLREYFRTYGDVIEAVIMKDRNTGRARGFGFVVFADPAVAERVVREKHIIDGRTVEAKKAVPRDDQNVVNKNNGSLQGSPGPSRTKKIFVGGLASTVTESDFKNYFDQFGMITDVVVMYDHNTQRPRGFGFITYDSEDSVDKVLFKTFHELNGKMVEVKRAVPKELSPGPSRNQLGGYGNGLSRVNSFLNAYTQGNSPNSVGGYGVRLDGRFSPVSVGRSGYSPFRPSAYGMETNFEPVLSPRYGGNGNSSPQIGYGRGWNPFYNSSPNRYDSPVGYGGGISVTGSGLTSAPRNIWANGNLNYASN-SNSNDLMGSGSGSTGLAGAFGSIGTIWGSSNISGQRGGTDSLYSSGGISYSNTDNSFGSGVGGYGRNNGNSVAPT-LWNGTASSDNLDGPFRNFYGDDSLFGDPSWRSSSPGLEGSGTFGYGLGKVASDITARNSAGYVGGYTVANRANGG 476
BLAST of DCAR_027819 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EFL9 ((Uncharacterized protein {ECO:0000313|EMBL:THG15210.1}))
HSP 1 Score: 587.03 bits (1512), Expect = 0.000e+0
Identity = 325/481 (67.57%), Postives = 378/481 (78.59%), Query Frame = 0
Match: A0A4S4EFL9 ((Uncharacterized protein {ECO:0000313|EMBL:THG15210.1}))
HSP 1 Score: 587.03 bits (1512), Expect = 0.000e+0
Identity = 325/481 (67.57%), Postives = 378/481 (78.59%), Query Frame = 0
Query: 1 MEMEPGKLFIGGISWDTNEDRLKEYFQTFGEVVEAVIMKDRTTGRARGFGFVVFADPAVAEGVVKDKHMIDGRTVEAKKAVPRDDQQTPNRISGSVQGSPVPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIRSQLSG-QNYGLSRVSNLLNAYTQGYSPSPGGGYGLRMDGRFSPAAVGRSGYSSL-SSGYGLGSYFEPGLGSNLEGSAHLGSNISYARGLDAFQNGSPNRY-GSPV--GHGIAGTGSVLNTMNWNTWGDGGLNY-TKNLTNSAEFMGSGSANTGLVNALGNIGAIWGSSPISGQDRGIGSAFSNENINYGNAENSFELGGLGYARNTRGNMAPSPISSFGAANSAYEGSFGNFHGSGSVFGDTTWRSASPDLEGPRTFDYDLRTAVSEVTPKNAVGYVGGYSVTNRANRG 475
MEMEPGKLFIGGISWDTNEDRL+EYFQTFGEVVEAVIMKDR TGRARGFGFVVFADP+VAE VV++KH+IDGRTVEAKKAVPRDDQ +R + S+QGSP P RTKKIFVGGLASTVTESDFK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE+AV++VLL+TFHELNGKMVEVKRAVPKELSPG R+ L G NYGLSRV++LLNAYTQGY+PS GGYG GRFSP VGRSGY + SGYG+G FEPGL + G+ + SNI Y RGL+ F NGSPNRY +PV G G G+GSVLN+ + N WG+G LNY + + ++ FMGSGS NTGLV A G+IG IWGS+ ISGQ S F++ N++YGN +NSF LG GY RN+ AP+P S+G+ + + FGN +G S +G++TWRS+SP+LEG +F Y S+VT KN+ GYVG YSVTNRANRG
Sbjct: 62 MEMEPGKLFIGGISWDTNEDRLREYFQTFGEVVEAVIMKDRNTGRARGFGFVVFADPSVAERVVREKHIIDGRTVEAKKAVPRDDQHMLSRNNSSLQGSPSPARTKKIFVGGLASTVTESDFKEYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPTRNMLGGYNNYGLSRVNSLLNAYTQGYNPSSVGGYG----GRFSPVTVGRSGYPTFGPSGYGMGLNFEPGLSPSYGGNGNFSSNIGYGRGLNPFYNGSPNRYNNNPVGYGWGSGGSGSVLNSTSRNMWGNGSLNYASNSANSNNSFMGSGSGNTGLVGAFGSIGEIWGSN-ISGQGGPTDSTFNSGNVSYGNMDNSFGLGVGGYGRNSGNTAAPTP--SYGS--DSLDEPFGNIYGGDSFYGNSTWRSSSPELEG--SFGYGFGKVASDVTAKNSAGYVGDYSVTNRANRG 531
BLAST of DCAR_027819 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7IKK4 ((Uncharacterized protein {ECO:0000313|EMBL:TXG69741.1}))
HSP 1 Score: 585.489 bits (1508), Expect = 0.000e+0
Identity = 304/478 (63.60%), Postives = 365/478 (76.36%), Query Frame = 0
Match: A0A5C7IKK4 ((Uncharacterized protein {ECO:0000313|EMBL:TXG69741.1}))
HSP 1 Score: 585.489 bits (1508), Expect = 0.000e+0
Identity = 304/478 (63.60%), Postives = 365/478 (76.36%), Query Frame = 0
Query: 1 MEMEPGKLFIGGISWDTNEDRLKEYFQTFGEVVEAVIMKDRTTGRARGFGFVVFADPAVAEGVVKDKHMIDGRTVEAKKAVPRDDQQTPNRISGSVQGSPVPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIRSQLSGQNYGLSRVSNLLNAYTQGYSPSPGGGYGLRMDGRFSPAAVGRSGYSSLSSGYGLGSYFEPGLGSNLEGSAHLGSNISYARGLDAFQNGSPNRYGSPVGHGIAGTG--SVLNTMNWNTWGDGGLNYTKNLTNSAEFMGSGSANTGLVNALGNIGAIWGSSPISGQDRGIGSAFSNENINYGNAENSFELGGLGYARNTRGNMAPSPISSFGAANSAYEGSFGNFHGSGSVFGDTTWRSASPDLEGPRTFDYDLRTAVSEVTPKNAVGYVGGYSVTNRA-NRG 475
MEME GKLFIGGISWDTNEDRL+EYFQ FGEV+EAVIMKDRTTGRARGFGF+VFADPAVAE VV DKHMIDGRTVEAKKAVPRDDQ +R S S+ GSP P RTKKIFVGGLASTVTESDFK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD+VLL+TFHELNGKMVEVKRAVPKELSPG RSQL NYGL+RVS+ LN YTQGY+P GYG+R+DGR+SP VGRSG+S + GYG+G FEP + + GSA + SN+ Y R L+ G+ NRY SP+G+G + G S+L++ + N WG+G LNY+ N NS +G GS +G+ + G+IGAIWG+SP SGQ G+GSA+S+ N++YG + G LGY RN+ G P+ A+N Y+ + + + +GS++GD+ WRS+ +LEGP +F + L +A S+V KN+ GYVGGY V NR NRG
Sbjct: 6 MEMELGKLFIGGISWDTNEDRLREYFQAFGEVLEAVIMKDRTTGRARGFGFIVFADPAVAERVVLDKHMIDGRTVEAKKAVPRDDQNIQSRNSNSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPTRSQLGTYNYGLNRVSSFLNGYTQGYNPGSVAGYGVRIDGRYSPVTVGRSGFSPIGPGYGMGLNFEPNMSPSYGGSATISSNLGYGRALNPSYAGNSNRYSSPIGYGGSNVGNSSLLSSPSRNLWGNGNLNYSTNSANSNSLLGLGSGTSGM-GSFGSIGAIWGTSPNSGQGGGVGSAYSSGNLSYGTGDFGVGSGVLGYGRNS-GTGVPTS-----ASNGGYDEGYADIYENGSLYGDSAWRSSPSELEGPGSFGFGLGSAASDVMTKNSAGYVGGYGVANRQPNRG 476
BLAST of DCAR_027819 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QLZ2 ((Heterogeneous nuclear ribonucleoprotein like {ECO:0000313|EMBL:PSS10422.1}))
HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0
Identity = 317/479 (66.18%), Postives = 370/479 (77.24%), Query Frame = 0
Match: A0A2R6QLZ2 ((Heterogeneous nuclear ribonucleoprotein like {ECO:0000313|EMBL:PSS10422.1}))
HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0
Identity = 317/479 (66.18%), Postives = 370/479 (77.24%), Query Frame = 0
Query: 1 MEMEPGKLFIGGISWDTNEDRLKEYFQTFGEVVEAVIMKDRTTGRARGFGFVVFADPAVAEGVVKDKHMIDGRTVEAKKAVPRDDQQTPNRISGSVQGSPVPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIRSQLSGQNYGLSRVSNLLNAYTQGYSPSPGGGYGLRMDGRFSPAAVGRSGYSSLS-SGYGLGSYFEPGLGSNLEGSAHLGSNISYARGLDAFQNGSPNRYGSPVGHGIA--GTGSVLNTMNWNTWGDGGLNYTKNLTNSAEFMGSGSANTGLVNALGNIGAIWGSSPISGQDRGIGSAFSNENINYGNAENSFELGGLGYARNTRGNMAPSPISSFGAANSAYEGSFGNFHGSGSVFGDTTWRSASPDLEGPRTFDYDLRTAVSEVTPKNAVGYVGGYSVTNRANRGM 476
MEMEPGKLFIGGISWDTNEDRL+EYFQ FG VVEAVIMKDR TGRARGFGFVVFADPAVAE VV++KH++DGRTVEAKKAVPRDDQ +R SGS+QGSP P TKKIFVGGLASTVTESDFK YFDQFG+ITDVVVMYDHNTQRPRGFGFITYDSEEAV++VLL+TFHELNGK+VEVKRAVPKELSPGS R+ + G YGLSRVS+LLNAYTQGY+PS GGYG R+DGRFS VGRSGY S +GYG+G FEPGL + G + SNI Y RGL+ F +G+PNRY + VG+G TGS L + + + WG+G LNY + NS + MGSGS TGL ALG+IG+IWGS GQ G S ++ NINYGN +N+F G GY RN+ + A P+SS+ A +GSFGNF+G S + D TW S+SP++EGP +F Y L S+V +N+ GYVG YSVTNRANRG+
Sbjct: 1 MEMEPGKLFIGGISWDTNEDRLREYFQNFGAVVEAVIMKDRKTGRARGFGFVVFADPAVAERVVREKHILDGRTVEAKKAVPRDDQHVLSRNSGSLQGSPGPACTKKIFVGGLASTVTESDFKMYFDQFGSITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKLVEVKRAVPKELSPGSSRNLVGGYTYGLSRVSSLLNAYTQGYNPSSFGGYGGRVDGRFSSVTVGRSGYPPFSPTGYGMGLNFEPGLSPSYNG--NFSSNIGYGRGLNPFYSGNPNRYNNSVGYGGGGNATGSTLGSTSQSMWGNGTLNYASSPANSNDLMGSGSGRTGLGGALGSIGSIWGSM-SGGQGGGTDSTYNTGNINYGNVDNTFGSGVRGYGRNSGSSAA--PMSSY--AGDGLDGSFGNFYGGVSFYEDRTWHSSSPEVEGPDSFGYGLEKVASDVKVQNSAGYVGSYSVTNRANRGI 472
BLAST of DCAR_027819 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7CC30 ((Uncharacterized protein {ECO:0000313|EMBL:MPA78759.1}))
HSP 1 Score: 582.408 bits (1500), Expect = 0.000e+0
Identity = 325/479 (67.85%), Postives = 366/479 (76.41%), Query Frame = 0
Match: A0A5B7CC30 ((Uncharacterized protein {ECO:0000313|EMBL:MPA78759.1}))
HSP 1 Score: 582.408 bits (1500), Expect = 0.000e+0
Identity = 325/479 (67.85%), Postives = 366/479 (76.41%), Query Frame = 0
Query: 1 MEMEPGKLFIGGISWDTNEDRLKEYFQTFGEVVEAVIMKDRTTGRARGFGFVVFADPAVAEGVVKDKHMIDGRTVEAKKAVPRDDQQTPNRISGSVQGSPVPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIRSQLSGQNYGLSRVSNLLNAYTQGYSPSPGGGYGLRMDGRFSPAAVGRSGYSSLS-SGYGLGSYFEPGLGSNLEGSAHLGSNISYARGLDAFQNGSPNRY--GSPVGHGIAGTGSVLNTMNWNTWGDGGLNYTKNLTNSAEFMGSGSANTGLVNALGNIGAIWGSSPISGQDRGIGSAFSNENINYGNAENSFELGGLGYARNTRGNMAPSPISSFGAANSAYEGSFGNFHGSGSVFGDTTWRSASPDLEGPRTFDYDLRTAVSEVTPKNAVGYVGGYSVTNRANRGM 476
MEMEPGKLFIGGISWDTNE+RL+EYFQTFGEVVEAVIMKDRTTGRARGFGFVVFADP VAE VV +KHMIDGR+VEAKKA PRDDQ NR +GS+QGSP P RTKKIFVGGLASTVTESDFK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV++VLL+TFHELNGKMVEVKRAVPKELSPG RS L G NYGLSRVS+ LNAYTQGY VGRSGY S SGYG+G FEPG S+ GS + SN Y RGL+ F +GS NRY G G GTGSVL++ + N WG+G LNY N NS +FMGSGS NTGLV A G+IGAIWGSSPISGQ SA+S+ NI+YG+++NSF GG GYARN + P+ SS+ A N +G+ GNF+ GS +GD TWRS+SP+LEG +F Y L A S+V PKN GYVGGYSVTNR++RG+
Sbjct: 9 MEMEPGKLFIGGISWDTNEERLREYFQTFGEVVEAVIMKDRTTGRARGFGFVVFADPVVAERVVMEKHMIDGRSVEAKKAFPRDDQHFLNRNNGSIQGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSLLGGYNYGLSRVSSFLNAYTQGYX-----------------VTVGRSGYPPFSPSGYGMGLNFEPGSSSSYGGSGNFSSNFGYGRGLNPFYSGSSNRYISPIGYGGGSGGTGSVLSSSSRNMWGNGSLNYATNSANSNDFMGSGSGNTGLVGAFGSIGAIWGSSPISGQGGVTDSAYSSGNISYGSSDNSFLSGGGGYARNNGSSALPT--SSYAAPNDGLDGALGNFYRGGSFYGDLTWRSSSPELEGSGSFSYGLGNAASDVIPKNPAGYVGGYSVTNRSDRGI 468
BLAST of DCAR_027819 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J0FYN2 ((RNA-binding (RRM/RBD/RNP motifs) family protein {ECO:0000313|EMBL:GFZ03280.1}))
HSP 1 Score: 570.852 bits (1470), Expect = 0.000e+0
Identity = 311/478 (65.06%), Postives = 366/478 (76.57%), Query Frame = 0
Match: A0A7J0FYN2 ((RNA-binding (RRM/RBD/RNP motifs) family protein {ECO:0000313|EMBL:GFZ03280.1}))
HSP 1 Score: 570.852 bits (1470), Expect = 0.000e+0
Identity = 311/478 (65.06%), Postives = 366/478 (76.57%), Query Frame = 0
Query: 1 MEMEPGKLFIGGISWDTNEDRLKEYFQTFGEVVEAVIMKDRTTGRARGFGFVVFADPAVAEGVVKDKHMIDGRTVEAKKAVPRDDQQTPNRISGSVQGSPVPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIRSQLSGQNYGLSRVSNLLNAYTQGYSPSPGGGYGLRMDGRFSPAAVGRSGYSSLS-SGYGLGSYFEPGLGSNLEGSAHLGSNISYARGLDAFQNGSPNRYGSPVGHGIA--GTGSVLNTMNWNTWGDGGLNYTKNLTNSAEFMGSGSANTGLVNALGNIGAIWGSSPISGQDRGIGSAFSNENINYGNAENSFELGGLGYARNTRGNMAPSPISSFGAANSAYEGSFGNFHGSGSVFGDTTWRSASPDLEGPRTFDYDLRTAVSEVTPKNAVGYVGGYSVTNRANRG 475
MEMEPGKLFIGGISWDTNED L+EYFQ FG VVEAVIMKDR TGRARGFGFVVFADPAVAE VV++KH++DGRTVEAKKAVPRDDQ +R SGS+QGSP P TKKIFVGGLA T+TESDFK YFDQFG+ITDVVVMYDHNTQRPRGFGFITYDSEEAV++VLL+TFHELNGK+VEVKRAVPKELSPGS R+ + G YGLSRVS+LLNAYTQGY+PS GG+G R+D RFSP VGRSG S +GYG+G FEPG+ + G + SNI Y GL+ F +GSPNRY + VG+G TGS L++ + + WG+G LNY + NS + MGSGS TGL ALG+IG+IWGS GQ G S ++ NINYGN +N+F G GY RN+ + A P+SS+ A +GSFG+F+G S + D TW S+SP+LEGP +F Y L S+V +N+ GYVG YSVTNRANRG
Sbjct: 1 MEMEPGKLFIGGISWDTNEDHLREYFQNFGAVVEAVIMKDRKTGRARGFGFVVFADPAVAERVVREKHILDGRTVEAKKAVPRDDQHVLSRNSGSLQGSPGPACTKKIFVGGLALTITESDFKMYFDQFGSITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKLVEVKRAVPKELSPGSSRNLVGGYTYGLSRVSSLLNAYTQGYNPSSFGGFGGRVDCRFSPVTVGRSGCPPFSPTGYGMGLNFEPGVSPSYNG--NFSSNIGYGPGLNPFYSGSPNRYNNSVGYGGGGNATGSTLSSTSRSMWGNGTLNYASSPANSNDLMGSGSGRTGLGGALGSIGSIWGSM-SGGQGGGTDSTYNTGNINYGNVDNTFGSGVRGYGRNSGSSAA--PMSSY--AGDGLDGSFGDFYGGVSFYEDRTWHSSSPELEGPDSFGYGLEKVASDVKVQNSAGYVGSYSVTNRANRG 471
BLAST of DCAR_027819 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2H5PLD6 ((Uncharacterized protein {ECO:0000313|EMBL:GAY53152.1}))
HSP 1 Score: 570.466 bits (1469), Expect = 0.000e+0
Identity = 311/483 (64.39%), Postives = 363/483 (75.16%), Query Frame = 0
Match: A0A2H5PLD6 ((Uncharacterized protein {ECO:0000313|EMBL:GAY53152.1}))
HSP 1 Score: 570.466 bits (1469), Expect = 0.000e+0
Identity = 311/483 (64.39%), Postives = 363/483 (75.16%), Query Frame = 0
Query: 1 MEMEPGKLFIGGISWDTNEDRLKEYFQTFGEVVEAVIMKDRTTGRARGFGFVVFADPAVAEGVVKDKHMIDGRTVEAKKAVPRDDQQTPNRISGSVQGSPVPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIRSQLSGQNYGLSRVSNLLNAYTQGYSPSPGGGYGLRMDGRFSPAAVGRSGYSSLSSGYGLGSYFEPGLGSNLEGSAHLGSNISYARGLDAFQNGSPNRYGSPVGH--GIAGTGSVLNTMNWNTWGDGGLNYTKNLTNSAEFMGSGSANTGLVNALGNIGAIWGSSPISGQDRGIGSAFSNENINYGNAENSFELGGLGYARNTRGNMAPSPISSFGAANSAYEGSFGNFH----GSGSVFGDTTWRSASPDLEGPRTFDYDLRTAVSEVTPKNAVGYVGGYSVTNR-ANRGM 476
M+ + GKLFIGGISWDTNE+RLKEYF T+GEVVEAVIMKDR TGRARGFGFVVFADPAVAE V+++KH IDGR VEAKKAVPRDDQ NR SGS+ GSP P RT+KIFVGGLASTVTESDFK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD+VLL+TFHELNGKMVEVKRAVPKELSPG RS L G +YGLSRV++ LN YTQGY+PS GGYGLRMDGRFSP A GRSG+ SGYG+G EPGL + +A+ SN+SY RGL + G+PNRYGSP+G+ G G S +++ N WG+GGLNY N +S +MGSGS G N GN G WGSS IS Q G + SN N YG+ +NSF LG GY RN +A S SSF A+N Y+G F + + GSGSV+GD TWRS+S + +G +F Y L + ++V+ KN+ G+VGGYSV R +NRG+
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGRFSPVAGGRSGFPPFGSGYGMG-MIEPGLNPSFGANANFNSNLSYGRGLSPYYIGNPNRYGSPLGYDGGNGGNTSFFSSVTRNLWGNGGLNYNSNSASSNAYMGSGSGTIG-GNTFGNTGVNWGSSAISAQGGGNNVSNSNANFGYGSGDNSFGLGAGGYGRNPGTTLAQS--SSFAASNGGYDGVFADLYGTGGGSGSVYGDPTWRSSSSERDGSGSFGYGLSSGTADVSAKNSPGFVGGYSVNKRQSNRGL 479
BLAST of DCAR_027819 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4TKI7 ((Uncharacterized protein {ECO:0000313|EMBL:ESR60978.1}))
HSP 1 Score: 570.466 bits (1469), Expect = 0.000e+0
Identity = 311/483 (64.39%), Postives = 363/483 (75.16%), Query Frame = 0
Match: V4TKI7 ((Uncharacterized protein {ECO:0000313|EMBL:ESR60978.1}))
HSP 1 Score: 570.466 bits (1469), Expect = 0.000e+0
Identity = 311/483 (64.39%), Postives = 363/483 (75.16%), Query Frame = 0
Query: 1 MEMEPGKLFIGGISWDTNEDRLKEYFQTFGEVVEAVIMKDRTTGRARGFGFVVFADPAVAEGVVKDKHMIDGRTVEAKKAVPRDDQQTPNRISGSVQGSPVPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLLRTFHELNGKMVEVKRAVPKELSPGSIRSQLSGQNYGLSRVSNLLNAYTQGYSPSPGGGYGLRMDGRFSPAAVGRSGYSSLSSGYGLGSYFEPGLGSNLEGSAHLGSNISYARGLDAFQNGSPNRYGSPVGH--GIAGTGSVLNTMNWNTWGDGGLNYTKNLTNSAEFMGSGSANTGLVNALGNIGAIWGSSPISGQDRGIGSAFSNENINYGNAENSFELGGLGYARNTRGNMAPSPISSFGAANSAYEGSFGNFH----GSGSVFGDTTWRSASPDLEGPRTFDYDLRTAVSEVTPKNAVGYVGGYSVTNR-ANRGM 476
M+ + GKLFIGGISWDTNE+RLKEYF T+GEVVEAVIMKDR TGRARGFGFVVFADPAVAE V+++KH IDGR VEAKKAVPRDDQ NR SGS+ GSP P RT+KIFVGGLASTVTESDFK YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD+VLL+TFHELNGKMVEVKRAVPKELSPG RS L G +YGLSRV++ LN YTQGY+PS GGYGLRMDGRFSP A GRSG+ SGYG+G EPGL + +A+ SN+SY RGL + G+PNRYGSP+G+ G G S +++ N WG+GGLNY N +S +MGSGS G N GN G WGSS IS Q G + SN N YG+ +NSF LG GY RN +A S SSF A+N Y+G F + + GSGSV+GD TWRS+S + +G +F Y L + ++V+ KN+ G+VGGYSV R +NRG+
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSTYGEVVEAVIMKDRNTGRARGFGFVVFADPAVAEIVIQEKHNIDGRMVEAKKAVPRDDQIVLNRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPTRSPLGGYHYGLSRVNSFLNGYTQGYTPSTVGGYGLRMDGRFSPVAGGRSGFPPFGSGYGMG-MIEPGLNPSFGANANFNSNLSYGRGLSPYYIGNPNRYGSPLGYDGGNGGNTSFFSSVTRNLWGNGGLNYNSNSASSNAYMGSGSGTIG-GNTFGNTGVNWGSSAISAQGGGNNVSNSNANFGYGSGDNSFGLGAGGYGRNPGTTLAQS--SSFAASNGGYDGVFADLYGTGGGSGSVYGDPTWRSSSSERDGSGSFGYGLSSGTADVSAKNSPGFVGGYSVNKRQSNRGI 479
| Match Name | Stats | Description |
|---|---|---|
| A0A5J5B3J3 | E-Value: 0.000e+0, PID: 69.87 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8537... [more] |
| A0A6A4LDZ5 | E-Value: 0.000e+0, PID: 65.06 | (Uncharacterized protein {ECO:0000313|EMBL:KAE9452... [more] |
| A0A834HDT2 | E-Value: 0.000e+0, PID: 64.64 | (Uncharacterized protein {ECO:0000313|EMBL:KAF7151... [more] |
| A0A4S4EFL9 | E-Value: 0.000e+0, PID: 67.57 | (Uncharacterized protein {ECO:0000313|EMBL:THG1521... [more] |
| A0A5C7IKK4 | E-Value: 0.000e+0, PID: 63.60 | (Uncharacterized protein {ECO:0000313|EMBL:TXG6974... [more] |
| A0A2R6QLZ2 | E-Value: 0.000e+0, PID: 66.18 | (Heterogeneous nuclear ribonucleoprotein like {ECO... [more] |
| A0A5B7CC30 | E-Value: 0.000e+0, PID: 67.85 | (Uncharacterized protein {ECO:0000313|EMBL:MPA7875... [more] |
| A0A7J0FYN2 | E-Value: 0.000e+0, PID: 65.06 | (RNA-binding (RRM/RBD/RNP motifs) family protein {... [more] |
| A0A2H5PLD6 | E-Value: 0.000e+0, PID: 64.39 | (Uncharacterized protein {ECO:0000313|EMBL:GAY5315... [more] |
| V4TKI7 | E-Value: 0.000e+0, PID: 64.39 | (Uncharacterized protein {ECO:0000313|EMBL:ESR6097... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |