Resource Type:
Polypeptide
Name:
DCAR_027922
Identifier:
DCAR_027922.mRNA-protein
Sequence:
MNISFWEILATLTPYLLSILTFLIFLEQITYLKKKSTIPGPNLVFPFLGN
AIPLVRNPTKFWDIQSLLAKSTPQGISANYIIGKFIVFIHSTDLSHKIFA
NVRPDAFHLVGHPFGKKLFGEHNLIYMMGQDHKDLRRRIAPNFTPRALST
YTHLQQAIILKHLKSWLSEGNKVTSVPIRIMCRDMNLETSQKVFVGPYLS
IEAQERFNYDYNFFNVGLMKLPIDLPGFAFRNARLAVSRLIETLAGCAEL
SKEKMKGGDEPTCLIDFWMQETLREIESSTEKSPPHSSNLEIGGHIFDFL
FAAQDASTSSLLWAVTLLDSHQDVLEKVRREVAGIWTPESGKYITAEQLR
EMKYTEAVAREVIRLKAPATMVPHIAGEDFALTKDYTIPKGTIVFPSVYE
SSFQGFPEPDRFDPDRFMPDRQEDIVYKRNFLAFGAGAHQCVGQRYALNH
LVLFIAMFTSLIDFKRDRTDGCDDINYVPTICPKDDCRVFLSKRCTKFPD
LK*
Sequence Length:
503
Sequence Checksum:
3156c1135d4ae04b107b57c6e9b569eb
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_027922, derives from mRNA, DCAR_027922. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_027922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_027922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A103RTL5 ((Cytochrome P450 {ECO:0000313|EMBL:KVG73841.1}))
HSP 1 Score: 827.78 bits (2137), Expect = 0.000e+0
Identity = 389/498 (78.11%), Postives = 443/498 (88.96%), Query Frame = 0
Match: A0A103RTL5 ((Cytochrome P450 {ECO:0000313|EMBL:KVG73841.1}))
HSP 1 Score: 827.78 bits (2137), Expect = 0.000e+0
Identity = 389/498 (78.11%), Postives = 443/498 (88.96%), Query Frame = 0
Query: 8 ILATLTPYLLSILTFLIFLEQITYLKKKSTIPGPNLVFPFLGNAIPLVRNPTKFWDIQSLLAKSTPQGISANYIIGKFIVFIHSTDLSHKIFANVRPDAFHLVGHPFGKKLFGEHNLIYMMGQDHKDLRRRIAPNFTPRALSTYTHLQQAIILKHLKSWL-SEGNKVTSVPIRIMCRDMNLETSQKVFVGPYLSIEAQERFNYDYNFFNVGLMKLPIDLPGFAFRNARLAVSRLIETLAGCAELSKEKMKGGDEPTCLIDFWMQETLREI---ESSTEKSPPHSSNLEIGGHIFDFLFAAQDASTSSLLWAVTLLDSHQDVLEKVRREVAGIWTPESGKYITAEQLREMKYTEAVAREVIRLKAPATMVPHIAGEDFALTKDYTIPKGTIVFPSVYESSFQGFPEPDRFDPDRFMPDRQEDIVYKRNFLAFGAGAHQCVGQRYALNHLVLFIAMFTSLIDFKRDRTDGCDDINYVPTICPKDDCRVFLSKRCTKFPDL 501
IL ++ PY+LSI FLI LEQI+YL KK +IPGP LV PF+GNA+ LVRNPT FWD+QS +AKS+ G SANYIIG+FIVFI STDLSHKIFANVRPDAFHLVGHPFGKKLFG+HNLIYMMGQ+HKDLRRRIAPNFTP+ALSTYT +QQ IILKHLKSW+ S + + P+R++CRDMNLETSQ VFVGPYLS E+++RF DYNFFNVGLMKLPIDLPGFAFRNARLAVSRL+ETLA CAE SK KMK G++ TCL+DFWMQ+T+REI E + EK PPHSS+ EIGGH+FDFLFA+QDASTSSLLWAV+LLDSH DVLE+VR+EV+GIW+PES K ITAEQLREM+YTEAVAREVIR +APATMVPHIAGEDF LT+ YTIPKGTIVFPSVYESSFQGF EP+ FDPDRFM +RQED VYK+N+LAFGAGAHQCVGQRYA+NHLVLFIAMFTSL DFKR+RTDGCD+I+YVPTICP+DDC+V +S RCT+FP L
Sbjct: 7 ILLSVAPYILSITAFLILLEQISYLNKKRSIPGPTLVLPFVGNAVSLVRNPTHFWDLQSAMAKSSGIGFSANYIIGRFIVFISSTDLSHKIFANVRPDAFHLVGHPFGKKLFGDHNLIYMMGQEHKDLRRRIAPNFTPKALSTYTEIQQHIILKHLKSWMESPESSTKAFPLRLLCRDMNLETSQTVFVGPYLSGESRKRFEVDYNFFNVGLMKLPIDLPGFAFRNARLAVSRLVETLAVCAEDSKTKMKSGNDATCLVDFWMQDTIREIAAAEDAGEKPPPHSSSTEIGGHLFDFLFASQDASTSSLLWAVSLLDSHPDVLERVRKEVSGIWSPESEKLITAEQLREMRYTEAVAREVIRYRAPATMVPHIAGEDFPLTETYTIPKGTIVFPSVYESSFQGFIEPELFDPDRFMENRQEDRVYKKNYLAFGAGAHQCVGQRYAINHLVLFIAMFTSLFDFKRERTDGCDEISYVPTICPRDDCKVVVSLRCTRFPSL 504
BLAST of DCAR_027922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438C0E8 ((Cytochrome P450 710A11 {ECO:0000313|EMBL:RVW16710.1}))
HSP 1 Score: 820.076 bits (2117), Expect = 0.000e+0
Identity = 381/498 (76.51%), Postives = 434/498 (87.15%), Query Frame = 0
Match: A0A438C0E8 ((Cytochrome P450 710A11 {ECO:0000313|EMBL:RVW16710.1}))
HSP 1 Score: 820.076 bits (2117), Expect = 0.000e+0
Identity = 381/498 (76.51%), Postives = 434/498 (87.15%), Query Frame = 0
Query: 9 LATLTPYLLSILTFLIFLEQITYLKKKSTIPGPNLVFPFLGNAIPLVRNPTKFWDIQSLLAKSTPQGISANYIIGKFIVFIHSTDLSHKIFANVRPDAFHLVGHPFGKKLFGEHNLIYMMGQDHKDLRRRIAPNFTPRALSTYTHLQQAIILKHLKSWLSEGNKVTSVPI--RIMCRDMNLETSQKVFVGPYLSIEAQERFNYDYNFFNVGLMKLPIDLPGFAFRNARLAVSRLIETLAGCAELSKEKMKGGDEPTCLIDFWMQETLREIESSTEKS---PPHSSNLEIGGHIFDFLFAAQDASTSSLLWAVTLLDSHQDVLEKVRREVAGIWTPESGKYITAEQLREMKYTEAVAREVIRLKAPATMVPHIAGEDFALTKDYTIPKGTIVFPSVYESSFQGFPEPDRFDPDRFMPDRQEDIVYKRNFLAFGAGAHQCVGQRYALNHLVLFIAMFTSLIDFKRDRTDGCDDINYVPTICPKDDCRVFLSKRCTKFPDL 501
A++ PYLLS++ L+FLEQI+YLK+K IPGP VFPF+GNA+ L+RNPTKFWD+QS LA+S+ GISANYI+GKFIVFI STDLSHKIFANVRPDAFHLVGHPFGKKLFGEHNLIY MGQ HKD+RRRIAPNFTPRAL+ YT LQQ IILKHL +W + +K + PI R++CR+MNL+TSQ VFVGPYLS EA+ERFN DYN FNVGLMKLP DLPGFAFR ARLAV RLI+TLAGC + SK M+ G+EP CLIDFWMQETLREI ++T+ PPHS N EIGGH+FDFLFAAQDASTSSLLWAVTLLDSH +VL KVR EVAGIW+PES ITAEQLREMKYTEAVAREV+R++APATMVPHIAGEDF LT+ YTIPKGTIVFPSV+ESSFQGFP+P+RF+P+RFM RQED +YK+NFLAFGAGAHQCVGQRYA+NHLVLFIAMFTSL+DFKR RTDGCDDI YVPTICPKDDC+V+LS+RC ++P
Sbjct: 11 FASVAPYLLSLIALLVFLEQISYLKRKRLIPGPPFVFPFIGNAVSLIRNPTKFWDLQSSLARSSDLGISANYIVGKFIVFIRSTDLSHKIFANVRPDAFHLVGHPFGKKLFGEHNLIYTMGQQHKDIRRRIAPNFTPRALAAYTSLQQVIILKHLMAWEALASKASPTPISLRLLCREMNLDTSQTVFVGPYLSQEARERFNRDYNLFNVGLMKLPFDLPGFAFREARLAVDRLIKTLAGCTDESKATMEAGEEPRCLIDFWMQETLREIAAATDSGEPLPPHSGNAEIGGHLFDFLFAAQDASTSSLLWAVTLLDSHPEVLAKVREEVAGIWSPESDTLITAEQLREMKYTEAVAREVVRIRAPATMVPHIAGEDFQLTESYTIPKGTIVFPSVFESSFQGFPDPERFEPERFMEHRQEDRLYKKNFLAFGAGAHQCVGQRYAINHLVLFIAMFTSLVDFKRHRTDGCDDIAYVPTICPKDDCKVYLSRRCARYPSF 508
BLAST of DCAR_027922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438JPA1 ((Cytochrome P450 710A11 {ECO:0000313|EMBL:RVX10764.1}))
HSP 1 Score: 820.076 bits (2117), Expect = 0.000e+0
Identity = 382/498 (76.71%), Postives = 434/498 (87.15%), Query Frame = 0
Match: A0A438JPA1 ((Cytochrome P450 710A11 {ECO:0000313|EMBL:RVX10764.1}))
HSP 1 Score: 820.076 bits (2117), Expect = 0.000e+0
Identity = 382/498 (76.71%), Postives = 434/498 (87.15%), Query Frame = 0
Query: 9 LATLTPYLLSILTFLIFLEQITYLKKKSTIPGPNLVFPFLGNAIPLVRNPTKFWDIQSLLAKSTPQGISANYIIGKFIVFIHSTDLSHKIFANVRPDAFHLVGHPFGKKLFGEHNLIYMMGQDHKDLRRRIAPNFTPRALSTYTHLQQAIILKHLKSWLSEGNKVTSVPI--RIMCRDMNLETSQKVFVGPYLSIEAQERFNYDYNFFNVGLMKLPIDLPGFAFRNARLAVSRLIETLAGCAELSKEKMKGGDEPTCLIDFWMQETLREIESSTEKS---PPHSSNLEIGGHIFDFLFAAQDASTSSLLWAVTLLDSHQDVLEKVRREVAGIWTPESGKYITAEQLREMKYTEAVAREVIRLKAPATMVPHIAGEDFALTKDYTIPKGTIVFPSVYESSFQGFPEPDRFDPDRFMPDRQEDIVYKRNFLAFGAGAHQCVGQRYALNHLVLFIAMFTSLIDFKRDRTDGCDDINYVPTICPKDDCRVFLSKRCTKFPDL 501
A++ PYLLS++ L+FLEQI+YLK+K IPGP VFPF+GNA+ L+RNPTKFWDIQS LA+S+ GISANYI+GKFIVFI STDLSHKIFANVRPDAFHLVGHPFGKKLFGEHNLIY MGQ HKD+RRRIAPNFTPRAL+ YT LQQ IILKHL +W + +K + PI R++CR+MNL+TSQ VFVGPYLS EA+ERFN DYN FNVGLMKLP DLPGFAFR ARLAV RLI+TLAGC + SK M+ G+EP CLIDFWMQETLREI ++T+ PPHS N EIGGH+FDFLFAAQDASTSSLLWAVTLLDSH +VL KVR EVAGIW+PES ITAEQLREMKYTEAVAREV+R++APATMVPHIAGEDF LT+ YTIPKGTIVFPSV+ESSFQGFP+P+RF+P+RFM RQED +YK+NFLAFGAGAHQCVGQRYA+NHLVLFIAMFTSL+DFKR RTDGCDDI YVPTICPKDDC+V+LS+RC ++P
Sbjct: 11 FASVAPYLLSLIALLVFLEQISYLKRKRLIPGPPFVFPFIGNAVSLIRNPTKFWDIQSSLARSSDLGISANYIVGKFIVFIRSTDLSHKIFANVRPDAFHLVGHPFGKKLFGEHNLIYTMGQQHKDIRRRIAPNFTPRALAAYTSLQQVIILKHLMAWEALASKASPTPISLRLLCREMNLDTSQTVFVGPYLSQEARERFNRDYNLFNVGLMKLPFDLPGFAFREARLAVDRLIKTLAGCTDDSKATMEAGEEPRCLIDFWMQETLREIAAATDSGEPLPPHSGNAEIGGHLFDFLFAAQDASTSSLLWAVTLLDSHPEVLAKVREEVAGIWSPESDTLITAEQLREMKYTEAVAREVVRIRAPATMVPHIAGEDFQLTESYTIPKGTIVFPSVFESSFQGFPDPERFEPERFMEHRQEDRLYKKNFLAFGAGAHQCVGQRYAINHLVLFIAMFTSLVDFKRHRTDGCDDIAYVPTICPKDDCKVYLSRRCARYPSF 508
BLAST of DCAR_027922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HLR0 ((Uncharacterized protein {ECO:0000313|EMBL:CCB55784.1}))
HSP 1 Score: 820.076 bits (2117), Expect = 0.000e+0
Identity = 382/498 (76.71%), Postives = 434/498 (87.15%), Query Frame = 0
Match: F6HLR0 ((Uncharacterized protein {ECO:0000313|EMBL:CCB55784.1}))
HSP 1 Score: 820.076 bits (2117), Expect = 0.000e+0
Identity = 382/498 (76.71%), Postives = 434/498 (87.15%), Query Frame = 0
Query: 9 LATLTPYLLSILTFLIFLEQITYLKKKSTIPGPNLVFPFLGNAIPLVRNPTKFWDIQSLLAKSTPQGISANYIIGKFIVFIHSTDLSHKIFANVRPDAFHLVGHPFGKKLFGEHNLIYMMGQDHKDLRRRIAPNFTPRALSTYTHLQQAIILKHLKSWLSEGNKVTSVPI--RIMCRDMNLETSQKVFVGPYLSIEAQERFNYDYNFFNVGLMKLPIDLPGFAFRNARLAVSRLIETLAGCAELSKEKMKGGDEPTCLIDFWMQETLREIESSTEKS---PPHSSNLEIGGHIFDFLFAAQDASTSSLLWAVTLLDSHQDVLEKVRREVAGIWTPESGKYITAEQLREMKYTEAVAREVIRLKAPATMVPHIAGEDFALTKDYTIPKGTIVFPSVYESSFQGFPEPDRFDPDRFMPDRQEDIVYKRNFLAFGAGAHQCVGQRYALNHLVLFIAMFTSLIDFKRDRTDGCDDINYVPTICPKDDCRVFLSKRCTKFPDL 501
A++ PYLLS++ L+FLEQI+YLK+K IPGP VFPF+GNA+ L+RNPTKFWDIQS LA+S+ GISANYI+GKFIVFI STDLSHKIFANVRPDAFHLVGHPFGKKLFGEHNLIY MGQ HKD+RRRIAPNFTPRAL+ YT LQQ IILKHL +W + +K + PI R++CR+MNL+TSQ VFVGPYLS EA+ERFN DYN FNVGLMKLP DLPGFAFR ARLAV RLI+TLAGC + SK M+ G+EP CLIDFWMQETLREI ++T+ PPHS N EIGGH+FDFLFAAQDASTSSLLWAVTLLDSH +VL KVR EVAGIW+PES ITAEQLREMKYTEAVAREV+R++APATMVPHIAGEDF LT+ YTIPKGTIVFPSV+ESSFQGFP+P+RF+P+RFM RQED +YK+NFLAFGAGAHQCVGQRYA+NHLVLFIAMFTSL+DFKR RTDGCDDI YVPTICPKDDC+V+LS+RC ++P
Sbjct: 11 FASVAPYLLSLIALLVFLEQISYLKRKRLIPGPPFVFPFIGNAVSLIRNPTKFWDIQSSLARSSDLGISANYIVGKFIVFIRSTDLSHKIFANVRPDAFHLVGHPFGKKLFGEHNLIYTMGQQHKDIRRRIAPNFTPRALAAYTSLQQVIILKHLMAWEALASKASPTPISLRLLCREMNLDTSQTVFVGPYLSQEARERFNRDYNLFNVGLMKLPFDLPGFAFREARLAVDRLIKTLAGCTDDSKATMEAGEEPRCLIDFWMQETLREIAAATDSGEPLPPHSGNAEIGGHLFDFLFAAQDASTSSLLWAVTLLDSHPEVLAKVREEVAGIWSPESDTLITAEQLREMKYTEAVAREVVRIRAPATMVPHIAGEDFQLTESYTIPKGTIVFPSVFESSFQGFPDPERFEPERFMEHRQEDRLYKKNFLAFGAGAHQCVGQRYAINHLVLFIAMFTSLVDFKRHRTDGCDDIAYVPTICPKDDCKVYLSRRCARYPSF 508
BLAST of DCAR_027922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7C8W5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA77582.1}) (Fragment))
HSP 1 Score: 818.535 bits (2113), Expect = 0.000e+0
Identity = 384/503 (76.34%), Postives = 436/503 (86.68%), Query Frame = 0
Match: A0A5B7C8W5 ((Uncharacterized protein {ECO:0000313|EMBL:MPA77582.1}) (Fragment))
HSP 1 Score: 818.535 bits (2113), Expect = 0.000e+0
Identity = 384/503 (76.34%), Postives = 436/503 (86.68%), Query Frame = 0
Query: 1 MNISFWEILATLTPYLLSILTFLIFLEQITYLKKKSTIPGPNLVFPFLGNAIPLVRNPTKFWDIQSLLAKSTPQGISANYIIGKFIVFIHSTDLSHKIFANVRPDAFHLVGHPFGKKLFGEHNLIYMMGQDHKDLRRRIAPNFTPRALSTYTHLQQAIILKHLKSW-LSEGNKVTSVPIRIMCRDMNLETSQKVFVGPYLSIEAQERFNYDYNFFNVGLMKLPIDLPGFAFRNARLAVSRLIETLAGCAELSKEKMKGGDEPTCLIDFWMQETLRE---IESSTEKSPPHSSNLEIGGHIFDFLFAAQDASTSSLLWAVTLLDSHQDVLEKVRREVAGIWTPESGKYITAEQLREMKYTEAVAREVIRLKAPATMVPHIAGEDFALTKDYTIPKGTIVFPSVYESSFQGFPEPDRFDPDRFMPDRQEDIVYKRNFLAFGAGAHQCVGQRYALNHLVLFIAMFTSLIDFKRDRTDGCDDINYVPTICPKDDCRVFLSKRCTKFP 499
M+ S W +++ T Y LS+L FLIFLEQ++YLKKK++IPGP+LV P +GNAI LVRNPT FWD+QS LA S+ GISANYI G+FI+FI STDLSHKIFANVRPDAFHLVGHPFGKKLFG+HNLIYMMGQDHKDLRRRIAPNFTPRALSTYT LQQ IILKHL W + + + +R++CRDMNLETSQ VF+GPYL+ EA+ERFN DYN FNVGLMKLPIDLPGFAFR ARL V RL+ETL CAE SK KMK G++ TCLIDFWMQET+RE +E S E PPH+ +++IGGH+FDFLFAAQDASTSSLLWAVTLLDSH DVL KVR EVAGIW+PES ITAEQL EMKYTEAV REV+R +APAT+VPHIAGEDF LT+ YTIPKGTIVFPSV+ESSFQGFPEPDRFDPDRFM +RQED V+K++FLAFGAGAHQCVGQRYALNHLVLFIAMFTSL+DFKR RTDGCDDI+YVPTICPKDDC+V+LS+RC ++P
Sbjct: 11 MDSSIWATVSSFTTYFLSLLAFLIFLEQVSYLKKKNSIPGPSLVIPIIGNAISLVRNPTNFWDLQSALANSSHLGISANYISGRFIIFIRSTDLSHKIFANVRPDAFHLVGHPFGKKLFGDHNLIYMMGQDHKDLRRRIAPNFTPRALSTYTTLQQKIILKHLIMWDRMSSSSLEPIALRLLCRDMNLETSQTVFIGPYLTNEARERFNRDYNLFNVGLMKLPIDLPGFAFREARLGVKRLVETLGVCAEESKMKMKAGNKQTCLIDFWMQETVRELAAVEDSGEPEPPHTGSIKIGGHLFDFLFAAQDASTSSLLWAVTLLDSHPDVLTKVREEVAGIWSPESDTLITAEQLNEMKYTEAVTREVVRFRAPATLVPHIAGEDFPLTETYTIPKGTIVFPSVFESSFQGFPEPDRFDPDRFMEERQEDRVFKKDFLAFGAGAHQCVGQRYALNHLVLFIAMFTSLLDFKRHRTDGCDDISYVPTICPKDDCKVYLSRRCARYP 513
BLAST of DCAR_027922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A251V0G5 ((Putative cytochrome P450, family 710, subfamily A, polypeptide 1 {ECO:0000313|EMBL:OTG29107.1}))
HSP 1 Score: 808.135 bits (2086), Expect = 0.000e+0
Identity = 384/502 (76.49%), Postives = 434/502 (86.45%), Query Frame = 0
Match: A0A251V0G5 ((Putative cytochrome P450, family 710, subfamily A, polypeptide 1 {ECO:0000313|EMBL:OTG29107.1}))
HSP 1 Score: 808.135 bits (2086), Expect = 0.000e+0
Identity = 384/502 (76.49%), Postives = 434/502 (86.45%), Query Frame = 0
Query: 4 SFWEILATLTPYLLSILTFLIFLEQITYLKKKSTIPGPNLVFPFLGNAIPLVRNPTKFWDIQSLLAKSTPQGISANYIIGKFIVFIHSTDLSHKIFANVRPDAFHLVGHPFGKKLFGEHNLIYMMGQDHKDLRRRIAPNFTPRALSTYTHLQQAIILKHLKSWL-SEGNKVTSVPIRIMCRDMNLETSQKVFVGPYLSIEAQERFNYDYNFFNVGLMKLPIDLPGFAFRNARLAVSRLIETLAGCAELSKEKMKGGDEPTCLIDFWMQETLREI---ESSTEKSPPHSSNLEIGGHIFDFLFAAQDASTSSLLWAVTLLDSHQDVLEKVRREVAGIWTPESGKYITAEQLREMKYTEAVAREVIRLKAPATMVPHIAGEDFALTKDYTIPKGTIVFPSVYESSFQGFPEPDRFDPDRFMPDRQEDIVYKRNFLAFGAGAHQCVGQRYALNHLVLFIAMFTSLIDFKRDRTDGCDDINYVPTICPKDDCRVFLSKRCTKFPDL 501
S + L PY+LS TFLIF+EQI YLKKK ++PGPNLV PF GNAI LVR+PT FWD+QS +AKS+ G S NYIIG+FIVFI ST+LSHK+F NVRPDAFHLVGHPFGKKLFGEHNLIYMMGQ+HKDLRRRIAPNFTP+ALSTYT LQQ IILKHLKSW+ S + P+R++CRDMNLETSQ VFVGPYLS E+++RF DYNFFNVGLMKLP+DLPGFAFRNARLAVSRL++TLA CAE SK KMK G+EPTCL+DFWMQ+TLREI E S EK PH+S+ EIGGH+FDFLFA+QDASTSSLLWAVTLLDSH +VL +VR EVAGIW+PES K ITAE+LR+M+YTEAVAREVIR +APAT+VPHIAGEDF LT+ YTIPKGTIVFPSVYESSFQGF E DRFDPDRFM RQED VYK+N+LAFGAG HQCVGQRYA+NHLVLFIAMFTSL DFKR+R+DGCD+I YVPTICP+DDC+V LS RC +FP L
Sbjct: 3 SLVTVFVRLLPYILSFATFLIFIEQINYLKKKRSVPGPNLVLPFFGNAISLVRDPTSFWDLQSTMAKSSGLGFSTNYIIGRFIVFIRSTELSHKVFNNVRPDAFHLVGHPFGKKLFGEHNLIYMMGQEHKDLRRRIAPNFTPKALSTYTELQQHIILKHLKSWVDSPDSGSNPFPLRLLCRDMNLETSQNVFVGPYLSGESRKRFEIDYNFFNVGLMKLPVDLPGFAFRNARLAVSRLVKTLAVCAEDSKTKMKLGEEPTCLVDFWMQDTLREIAVSEDSGEKPSPHTSSTEIGGHLFDFLFASQDASTSSLLWAVTLLDSHPEVLSRVREEVAGIWSPESDKLITAEELRQMRYTEAVAREVIRYRAPATLVPHIAGEDFPLTETYTIPKGTIVFPSVYESSFQGFIEADRFDPDRFMEHRQEDRVYKKNYLAFGAGPHQCVGQRYAINHLVLFIAMFTSLFDFKRERSDGCDEIAYVPTICPRDDCKVVLSLRCRRFPCL 504
BLAST of DCAR_027922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5N6M5B7 ((Uncharacterized protein {ECO:0000313|EMBL:KAD3068952.1}))
HSP 1 Score: 807.749 bits (2085), Expect = 0.000e+0
Identity = 378/498 (75.90%), Postives = 434/498 (87.15%), Query Frame = 0
Match: A0A5N6M5B7 ((Uncharacterized protein {ECO:0000313|EMBL:KAD3068952.1}))
HSP 1 Score: 807.749 bits (2085), Expect = 0.000e+0
Identity = 378/498 (75.90%), Postives = 434/498 (87.15%), Query Frame = 0
Query: 8 ILATLTPYLLSILTFLIFLEQITYLKKKSTIPGPNLVFPFLGNAIPLVRNPTKFWDIQSLLAKSTPQGISANYIIGKFIVFIHSTDLSHKIFANVRPDAFHLVGHPFGKKLFGEHNLIYMMGQDHKDLRRRIAPNFTPRALSTYTHLQQAIILKHLKSWLSEGNKVT-SVPIRIMCRDMNLETSQKVFVGPYLSIEAQERFNYDYNFFNVGLMKLPIDLPGFAFRNARLAVSRLIETLAGCAELSKEKMKGGDEPTCLIDFWMQETLREI---ESSTEKSPPHSSNLEIGGHIFDFLFAAQDASTSSLLWAVTLLDSHQDVLEKVRREVAGIWTPESGKYITAEQLREMKYTEAVAREVIRLKAPATMVPHIAGEDFALTKDYTIPKGTIVFPSVYESSFQGFPEPDRFDPDRFMPDRQEDIVYKRNFLAFGAGAHQCVGQRYALNHLVLFIAMFTSLIDFKRDRTDGCDDINYVPTICPKDDCRVFLSKRCTKFPDL 501
IL L PY+ SI F I +EQITY+KKK ++PGPNLV PF+GNAI LVRNPT+FWD QS++AKS+ +G S NYIIG+FIVFI STDLSHKIFANVRPD FHL+GHPFGKKLFGEHNLIYMMGQ+HKDLRRRIAPNFTP+ALSTYT LQQ IILKHLKSW+ + T + P+R++CRDMNLETSQ VFVGPYLS E+++RF DYNFFNVGLMKLPIDLPGFAFRNARLAVSRL+ TLA CAE SK KM+ G+EPTCL+DFWMQE +REI E + EK PPH+ + E+GGH+FDFLFA+QDASTSSLLWAVTLLDSH +VL++VR+EV+ IW+PES + ITA+QLREM+YTEAVAREVIR +APAT+VPHIAG DF LT YTIPKGTIVFPSVYESSFQGF EPD FDPDRFM +RQED VYK+N+LAFGAG HQCVGQRYA+NHLVLFIAMFTSL DFKR+R+DGCD+I YVPTICP+DDCRV +S RC +FP L
Sbjct: 7 ILLWLAPYIFSIAAFAILVEQITYIKKKRSVPGPNLVLPFVGNAIQLVRNPTEFWDQQSIMAKSSGEGFSVNYIIGRFIVFIRSTDLSHKIFANVRPDGFHLIGHPFGKKLFGEHNLIYMMGQEHKDLRRRIAPNFTPKALSTYTELQQHIILKHLKSWIDTPDSGTKAFPLRLLCRDMNLETSQNVFVGPYLSGESRKRFEVDYNFFNVGLMKLPIDLPGFAFRNARLAVSRLVRTLAVCAEDSKTKMRSGEEPTCLVDFWMQEVVREIVATEEAGEKPPPHTGSTEVGGHLFDFLFASQDASTSSLLWAVTLLDSHPEVLQRVRKEVSSIWSPESDQLITADQLREMRYTEAVAREVIRYRAPATLVPHIAGVDFPLTDTYTIPKGTIVFPSVYESSFQGFIEPDLFDPDRFMEERQEDRVYKKNYLAFGAGPHQCVGQRYAINHLVLFIAMFTSLFDFKRERSDGCDEIAYVPTICPRDDCRVVVSLRCRRFPCL 504
BLAST of DCAR_027922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2J6MAQ4 ((Uncharacterized protein {ECO:0000313|EMBL:PLY96671.1}))
HSP 1 Score: 806.979 bits (2083), Expect = 0.000e+0
Identity = 385/503 (76.54%), Postives = 435/503 (86.48%), Query Frame = 0
Match: A0A2J6MAQ4 ((Uncharacterized protein {ECO:0000313|EMBL:PLY96671.1}))
HSP 1 Score: 806.979 bits (2083), Expect = 0.000e+0
Identity = 385/503 (76.54%), Postives = 435/503 (86.48%), Query Frame = 0
Query: 4 SFWEILATLTPYLLSILTFLIFLEQITYLKKKSTIPGPNLVFPFLGNAIPLVRNPTKFWDIQSLLAKSTPQGISANYIIGKFIVFIHSTDLSHKIFANVRPDAFHLVGHPFGKKLFGEHNLIYMMGQDHKDLRRRIAPNFTPRALSTYTHLQQAIILKHLKSWL-SEGNKVTSVPIRIMCRDMNLETSQKVFVGPYLSIEAQERFNYDYNFFNVGLMKLPIDLPGFAFRNARLAVSRLIETLAGCAELSKEKMKGGDEPTCLIDFWMQETLREIESST----EKSPPHSSNLEIGGHIFDFLFAAQDASTSSLLWAVTLLDSHQDVLEKVRREVAGIWTPESGKYITAEQLREMKYTEAVAREVIRLKAPATMVPHIAGEDFALTKDYTIPKGTIVFPSVYESSFQGFPEPDRFDPDRFMPDRQEDIVYKRNFLAFGAGAHQCVGQRYALNHLVLFIAMFTSLIDFKRDRTDGCDDINYVPTICPKDDCRVFLSKRCTKFPDL 501
S I L PY+LS+ FLIFLEQI YLKKK ++PGP+LV PF+GNAI LVRNPT+FWD+QS +AKS+ G S NYIIG+FIVFI STDLSHK+FANVRPDAFHLVGHPFGKKLFGEHNLIYMMGQ+HKDLRRRIAPNFTP+ALSTYT LQQ ILKHLKSW+ S + P+R++CRDMNLETSQ VFVGPYLS ++++RF DYNFFNVGLMKLPIDLPG AFRNARLAVSRLIETL CAE SK KMK G++PTCL+DFWMQ+TLREI ++ + PPHS++ EIGGH+FDFLFA+QDASTSSLLWAVTLLDSH DVLE+VR EV+ IWTPES ITAEQLREM+YTEAVAREV+R +APAT+VPHIAGEDF LT YTIPKGTIVFPSVYESSFQGF + DRFDPDRFM +RQED VYK+N+LAFGAGAHQCVGQRYA+NHLVLFIAMFTSL DFKRDRTDGCD+I YVPTICP+DDC+V LS RC +FP+L
Sbjct: 3 SISAIFMWLAPYILSMAAFLIFLEQINYLKKKRSVPGPSLVLPFIGNAISLVRNPTEFWDLQSAMAKSSDMGFSVNYIIGRFIVFIRSTDLSHKVFANVRPDAFHLVGHPFGKKLFGEHNLIYMMGQEHKDLRRRIAPNFTPKALSTYTQLQQYTILKHLKSWMESPESNTKPFPLRLLCRDMNLETSQNVFVGPYLSGDSRKRFEVDYNFFNVGLMKLPIDLPGTAFRNARLAVSRLIETLGVCAEDSKAKMKTGEDPTCLVDFWMQDTLREIAAAEEAGEKHPPPHSNSTEIGGHLFDFLFASQDASTSSLLWAVTLLDSHPDVLERVRTEVSSIWTPESDTLITAEQLREMRYTEAVAREVVRYRAPATLVPHIAGEDFPLTDTYTIPKGTIVFPSVYESSFQGFIDADRFDPDRFMEERQEDRVYKKNYLAFGAGAHQCVGQRYAINHLVLFIAMFTSLFDFKRDRTDGCDEITYVPTICPRDDCKVVLSLRCRRFPNL 505
BLAST of DCAR_027922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6S7NTA1 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4104918.1}))
HSP 1 Score: 806.209 bits (2081), Expect = 0.000e+0
Identity = 384/499 (76.95%), Postives = 435/499 (87.17%), Query Frame = 0
Match: A0A6S7NTA1 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4104918.1}))
HSP 1 Score: 806.209 bits (2081), Expect = 0.000e+0
Identity = 384/499 (76.95%), Postives = 435/499 (87.17%), Query Frame = 0
Query: 8 ILATLTPYLLSILTFLIFLEQITYLKKKSTIPGPNLVFPFLGNAIPLVRNPTKFWDIQSLLAKSTPQGISANYIIGKFIVFIHSTDLSHKIFANVRPDAFHLVGHPFGKKLFGEHNLIYMMGQDHKDLRRRIAPNFTPRALSTYTHLQQAIILKHLKSWL-SEGNKVTSVPIRIMCRDMNLETSQKVFVGPYLSIEAQERFNYDYNFFNVGLMKLPIDLPGFAFRNARLAVSRLIETLAGCAELSKEKMKGGDEPTCLIDFWMQETLREIESST----EKSPPHSSNLEIGGHIFDFLFAAQDASTSSLLWAVTLLDSHQDVLEKVRREVAGIWTPESGKYITAEQLREMKYTEAVAREVIRLKAPATMVPHIAGEDFALTKDYTIPKGTIVFPSVYESSFQGFPEPDRFDPDRFMPDRQEDIVYKRNFLAFGAGAHQCVGQRYALNHLVLFIAMFTSLIDFKRDRTDGCDDINYVPTICPKDDCRVFLSKRCTKFPDL 501
I L PY+LS+ FLIFLEQI YLKKK ++PGP+LV PF+GNAI LVRNPT+FWD+QS +AKS+ G S NYIIG+FIVFI STDLSHK+FANVRPDAFHLVGHPFGKKLFGEHNLIYMMGQ+HKDLRRRIAPNFTP+ALSTYT LQQ ILKHLKSW+ S + P+R++CRDMNLETSQ VFVGPYLS ++++RF DYNFFNVGLMKLPIDLPG AFRNARLAVSRLIETLA CAE SK KMK G++PTCL+DFWMQETLREI ++ + PPHS++ EIGGH+FDFLFA+QDASTSSLLWAVTLLDSH DVLE+VR EV+GIWTPES IT EQLREM+YTEAVAREV+R +APAT+VPHIAGEDF LT YTIPKGTIVFPSV+ESSFQGF + DRFDPDRFM +RQED VYK+N+LAFGAGAHQCVGQRYA+NHLVLFIAMFTSL DFKRDR+DGCD+I YVPTICP+DDC+V LS RC +FP+L
Sbjct: 7 IFIWLAPYILSMAAFLIFLEQINYLKKKRSVPGPSLVLPFIGNAISLVRNPTEFWDLQSDMAKSSDMGFSVNYIIGRFIVFIRSTDLSHKVFANVRPDAFHLVGHPFGKKLFGEHNLIYMMGQEHKDLRRRIAPNFTPKALSTYTQLQQYTILKHLKSWMESPESNTKPFPLRLLCRDMNLETSQNVFVGPYLSGDSRKRFEVDYNFFNVGLMKLPIDLPGTAFRNARLAVSRLIETLAVCAEDSKTKMKTGEDPTCLVDFWMQETLREIAAAEEAGEKHPPPHSNSTEIGGHLFDFLFASQDASTSSLLWAVTLLDSHPDVLERVRTEVSGIWTPESDTLITTEQLREMRYTEAVAREVVRYRAPATLVPHIAGEDFPLTDTYTIPKGTIVFPSVFESSFQGFIDADRFDPDRFMEERQEDRVYKKNYLAFGAGAHQCVGQRYAINHLVLFIAMFTSLFDFKRDRSDGCDEITYVPTICPRDDCKVVLSLRCRRFPNL 505
BLAST of DCAR_027922 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2U1MLX0 ((Cytochrome P450 {ECO:0000313|EMBL:PWA62271.1}))
HSP 1 Score: 797.734 bits (2059), Expect = 0.000e+0
Identity = 373/493 (75.66%), Postives = 428/493 (86.82%), Query Frame = 0
Match: A0A2U1MLX0 ((Cytochrome P450 {ECO:0000313|EMBL:PWA62271.1}))
HSP 1 Score: 797.734 bits (2059), Expect = 0.000e+0
Identity = 373/493 (75.66%), Postives = 428/493 (86.82%), Query Frame = 0
Query: 13 TPYLLSILTFLIFLEQITYLKKKSTIPGPNLVFPFLGNAIPLVRNPTKFWDIQSLLAKSTPQGISANYIIGKFIVFIHSTDLSHKIFANVRPDAFHLVGHPFGKKLFGEHNLIYMMGQDHKDLRRRIAPNFTPRALSTYTHLQQAIILKHLKSWL-SEGNKVTSVPIRIMCRDMNLETSQKVFVGPYLSIEAQERFNYDYNFFNVGLMKLPIDLPGFAFRNARLAVSRLIETLAGCAELSKEKMKGGDEPTCLIDFWMQETLREI---ESSTEKSPPHSSNLEIGGHIFDFLFAAQDASTSSLLWAVTLLDSHQDVLEKVRREVAGIWTPESGKYITAEQLREMKYTEAVAREVIRLKAPATMVPHIAGEDFALTKDYTIPKGTIVFPSVYESSFQGFPEPDRFDPDRFMPDRQEDIVYKRNFLAFGAGAHQCVGQRYALNHLVLFIAMFTSLIDFKRDRTDGCDDINYVPTICPKDDCRVFLSKRCTKFPDL 501
PY++S+L FL+ +EQI YLKKK IPGP+LV PF+GNAI LVRNPT+FW++Q+ A+ + G SANYIIGKFIVFI TDLSHKIFANVRPDAFHL+GHPFGKKLFGEHNLIYMMGQDHKDLRRRIAPNFTPRALS YT LQQ ILKHLKSWL S + + P+R++CRDMNLETSQ VFVGPYLS E + RF+ DYNFFNVGLMKLPIDLPGFAFRNARLAVSRL+ETL GCAE SK KMK G++PTCL+DFWMQ+ +RE+ E++ EK PH+ ++EIGGH+FDFLFA+QDASTSSLLWAV LLDSH DVL ++R EV+ IW+PESGK ITA+QLREM+YTEAVARE+IR +APAT+VPHIAGEDF LT+ Y IPKGTIVFPSV+ESSFQGF + DRFDPDRFM +RQED VYK+N+LAFGAGAHQCVGQRYA+NHLVLFIAMFTSL DFKR+R+DGCDDI YVPTICP+DDC+V LS RC FP L
Sbjct: 13 APYIISLLAFLVLVEQIKYLKKKQRIPGPSLVLPFIGNAISLVRNPTEFWELQAENARKSNTGFSANYIIGKFIVFIRDTDLSHKIFANVRPDAFHLIGHPFGKKLFGEHNLIYMMGQDHKDLRRRIAPNFTPRALSIYTELQQHTILKHLKSWLESPDSGSKAFPLRLLCRDMNLETSQNVFVGPYLSGETRTRFDVDYNFFNVGLMKLPIDLPGFAFRNARLAVSRLVETLTGCAEDSKNKMKSGEDPTCLVDFWMQDAIREVNAAEAAGEKPSPHTRSVEIGGHLFDFLFASQDASTSSLLWAVALLDSHPDVLSRLREEVSRIWSPESGKLITADQLREMRYTEAVAREIIRYRAPATLVPHIAGEDFPLTETYIIPKGTIVFPSVFESSFQGFVDADRFDPDRFMEERQEDRVYKKNYLAFGAGAHQCVGQRYAINHLVLFIAMFTSLFDFKRERSDGCDDIAYVPTICPRDDCKVVLSLRCRNFPCL 505
| Match Name | Stats | Description |
|---|---|---|
| A0A103RTL5 | E-Value: 0.000e+0, PID: 78.11 | (Cytochrome P450 {ECO:0000313|EMBL:KVG73841.1})[more] |
| A0A438C0E8 | E-Value: 0.000e+0, PID: 76.51 | (Cytochrome P450 710A11 {ECO:0000313|EMBL:RVW16710... [more] |
| A0A438JPA1 | E-Value: 0.000e+0, PID: 76.71 | (Cytochrome P450 710A11 {ECO:0000313|EMBL:RVX10764... [more] |
| F6HLR0 | E-Value: 0.000e+0, PID: 76.71 | (Uncharacterized protein {ECO:0000313|EMBL:CCB5578... [more] |
| A0A5B7C8W5 | E-Value: 0.000e+0, PID: 76.34 | (Uncharacterized protein {ECO:0000313|EMBL:MPA7758... [more] |
| A0A251V0G5 | E-Value: 0.000e+0, PID: 76.49 | (Putative cytochrome P450, family 710, subfamily A... [more] |
| A0A5N6M5B7 | E-Value: 0.000e+0, PID: 75.90 | (Uncharacterized protein {ECO:0000313|EMBL:KAD3068... [more] |
| A0A2J6MAQ4 | E-Value: 0.000e+0, PID: 76.54 | (Uncharacterized protein {ECO:0000313|EMBL:PLY9667... [more] |
| A0A6S7NTA1 | E-Value: 0.000e+0, PID: 76.95 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4104... [more] |
| A0A2U1MLX0 | E-Value: 0.000e+0, PID: 75.66 | (Cytochrome P450 {ECO:0000313|EMBL:PWA62271.1})[more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |