Resource Type:
Polypeptide
Name:
DCAR_027355
Identifier:
DCAR_027355.mRNA-protein
Sequence:
MQMCRKSSTVQLISRLTYSNLLGLDVNLRNGSLKEGSINWEMLQFKSRFP
REILLCRVGDFYEAIGIDACVLVEYAGLNPFGGLRSDSIPKAGCPVMNLR
QTLDDLTRNGYSVCIVEEVQGPTQARARKRRFISGHAHPGNPYVFGLVED
DRDLDFPEPMPVVGVSRSAKGYCLISVLETMKTYSAEDGLTEEAVVTKLR
TCQYHHLFLHRSLKHNSSGTSRWGEFGEGGLLWGECNARSFEWFEGDPVN
ELIIKVKELYGLDIEVTFRNVTVASVNRPRSLHLGTATQIGAISTEGIPS
LIKVLLPSDCIGLPVSYIKDLLLNPPSYEIASTIQAICKHMSSIPCSIPE
FTCVSPAKLVKLLESKEANHIEFCKIKNVLDEVIQMHGNSELHEILKLLI
DPTWAATGLNIDFEKLVKESEMVSGRIGEIISLDGDNDQEICSYSAIPDD
FFEMLESSWKGRVKRIHLNEAFTEVEKAAEALSLAVTEDFVPILSRIKAS
TAPLGGPRGEILYAREHGAVWFKGKRFAPSVWAGTPGEEQIKQLRPAVDS
KGKKVGEEWFTTTKVEVALARYHEAGSKAKEKVLELLRGLSAELQAKINV
LVFASVLLVIAKALFAHVSEGRRRKWVFPVLSQFDKGGSMKLVGLSPYWF
DAAEGNAVLNTVDMQSLFILTGPNGGGKSSLLRSICAASLLGICGFMVPA
ESASIPHFDSIMLHLKSYDSPADGKSSFQIEMSEVRSIISGATSRSLVLV
DEICRGTETAKGTCIAGSIIETLDFIGCLGIVSTHLHEQINYIKESEEIR
RAMEPVELIKRVREIEREVYVETEPIQQKDTKQAVAVNLISRLNDFHVNS
DAASMKALEEWRMRKMERAKQRGLGKNATITVQ*
Sequence Length:
884
Sequence Checksum:
9feba22fa8776bcb33c2cb5960c0c611
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_027355, derives from mRNA, DCAR_027355. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_027355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_027355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4U2Z9 (DNA_MISMATCH_REPAIR_2 domain-containing protein {ECO:0000259|PROSITE:PS00486})
HSP 1 Score: 1362.05 bits (3524), Expect = 0.000e+0
Identity = 640/789 (81.12%), Postives = 719/789 (91.13%), Query Frame = 0
Match: V4U2Z9 (DNA_MISMATCH_REPAIR_2 domain-containing protein {ECO:0000259|PROSITE:PS00486})
HSP 1 Score: 1362.05 bits (3524), Expect = 0.000e+0
Identity = 640/789 (81.12%), Postives = 719/789 (91.13%), Query Frame = 0
Query: 1 MQMCRKSSTVQLISRLTYSNLLGLDVNLRNGSLKEGSINWEMLQFKSRFPREILLCRVGDFYEAIGIDACVLVEYAGLNPFGGLRSDSIPKAGCPVMNLRQTLDDLTRNGYSVCIVEEVQGPTQARARKRRFISGHAHPGNPYVFGLVEDDRDLDFPEPMPVVGVSRSAKGYCLISVLETMKTYSAEDGLTEEAVVTKLRTCQYHHLFLHRSLKHNSSGTSRWGEFGEGGLLWGECNARSFEWFEGDPVNELIIKVKELYGLDIEVTFRNVTVASVNRPRSLHLGTATQIGAISTEGIPSLIKVLLPSDCIGLPVSYIKDLLLNPPSYEIASTIQAICKHMSSIPCSIPEFTCVSPAKLVKLLESKEANHIEFCKIKNVLDEVIQMHGNSELHEILKLLIDPTWAATGLNIDFEKLVKESEMVSGRIGEIISLDGDNDQEICSYSAIPDDFFEMLESSWKGRVKRIHLNEAFTEVEKAAEALSLAVTEDFVPILSRIKASTAPLGGPRGEILYAREHGAVWFKGKRFAPSVWAGTPGEEQIKQLRPAVDSKGKKVGEEWFTTTKVEVALARYHEAGSKAKEKVLELLRGLSAELQAKINVLVFASVLLVIAKALFAHVSEGRRRKWVFPVLS--QFDKGGSMKLVGLSPYWFDAAEGNAVLNTVDMQSLFILTGPNGGGKSSLLRSICAASLLGICGFMVPAESASIPHFDSIMLHLKSYDSPADGKSSFQIEMSEVRSIISGATSRSLVLVDEICRGTETAKGTCIAGSIIETLDFIGCLGIVSTHLH 787
+QMCRK ST+ L++RL YSNLLGLDVNL+NGSLKEG++NWEMLQFKS+FPRE+LLCRVGDFYEAIGIDAC+LVEYAGLNPFGGLR +SIPKAGCPV+NLRQTLDDLTRNGYSVCIVEEVQGPTQAR+RK RFISGHAHPG+PYVFGLV D DLDFPEPMPV+GVSRSAKGYC+IS+LETMKTYS EDGLTE+A+VTKLRT +YHHLFLH SL+ N+SGTSRWGE+GEGGLLWGEC AR FEWFEGDPV EL++KVKELYGL+ EVTFRNVTV+ NRPR LHLGTATQIGAI TEGIP L+KVLLPS+C GLP+ Y++DLLLNPP+YEIASTIQAICK MS + CSIPEFTCV+PAKLVKLLE +EANHIEFC+IKNVLDE++ M+GNSEL+EIL+LL+DPTW TGL IDFE LV+E + S RIGE+ISLDG++DQ+ICSY IP +FFE +ES+WKGRVKRIH+ EVE AAEALSLAVTEDF+PI+SRIKA+TAPLGGP+GEILYAREH AVWFKGK+F P+VWA TPGEEQIKQL+PAVDSKG+KVGEEWF+T KVE AL RYHEAG+KAK KVLELLRGLS+ELQ KIN+LVFAS+LLVI KALFAHVSEGRRRKWVFP L + D +K+ GLSPYWFDAAEG+AV NTVDMQSLF+LTGPNGGGKSSLLRSICAASLLGICG MVPAESASIP+FD+IMLH+KSYDSPADGKSSFQ+EMSE+RSI++ TSRSLVL+DEICRGTETAKGTCIAGSIIETLD IGCLGIVSTHLH
Sbjct: 90 LQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTCVAPAKLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVVTGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKDIELDGADCLKMNGLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 878
BLAST of DCAR_027355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9SJ69 ((DNA mismatch repair protein MSH1, mitochondrial {ECO:0000313|RefSeq:XP_011069365.1}))
HSP 1 Score: 1355.5 bits (3507), Expect = 0.000e+0
Identity = 638/796 (80.15%), Postives = 718/796 (90.20%), Query Frame = 0
Match: A0A6I9SJ69 ((DNA mismatch repair protein MSH1, mitochondrial {ECO:0000313|RefSeq:XP_011069365.1}))
HSP 1 Score: 1355.5 bits (3507), Expect = 0.000e+0
Identity = 638/796 (80.15%), Postives = 718/796 (90.20%), Query Frame = 0
Query: 1 MQMCRKSSTVQLISRLTYSNLLGLDVNLRNGSLKEGSINWEMLQFKSRFPREILLCRVGDFYEAIGIDACVLVEYAGLNPFGGLRSDSIPKAGCPVMNLRQTLDDLTRNGYSVCIVEEVQGPTQARARKRRFISGHAHPGNPYVFGLVEDDRDLDFPEPMPVVGVSRSAKGYCLISVLETMKTYSAEDGLTEEAVVTKLRTCQYHHLFLHRSLKHNSSGTSRWGEFGEGGLLWGECNARSFEWFEGDPVNELIIKVKELYGLDIEVTFRNVTVASVNRPRSLHLGTATQIGAISTEGIPSLIKVLLPSDCIGLPVSYIKDLLLNPPSYEIASTIQAICKHMSSIPCSIPEFTCVSPAKLVKLLESKEANHIEFCKIKNVLDEVIQMHGNSELHEILKLLIDPTWAATGLNIDFEKLVKESEMVSGRIGEIISLDGDNDQEICSYSAIPDDFFEMLESSWKGRVKRIHLNEAFTEVEKAAEALSLAVTEDFVPILSRIKASTAPLGGPRGEILYAREHGAVWFKGKRFAPSVWAGTPGEEQIKQLRPAVDSKGKKVGEEWFTTTKVEVALARYHEAGSKAKEKVLELLRGLSAELQAKINVLVFASVLLVIAKALFAHVSEGRRRKWVFPVLSQFDKGGS---------MKLVGLSPYWFDAAEGNAVLNTVDMQSLFILTGPNGGGKSSLLRSICAASLLGICGFMVPAESASIPHFDSIMLHLKSYDSPADGKSSFQIEMSEVRSIISGATSRSLVLVDEICRGTETAKGTCIAGSIIETLDFIGCLGIVSTHLH 787
MQMCRK S+V L+ RLT+SNLLG+D L+NGSLKEG++NWE+LQFKS+FPRE+LLCRVGDFYEAIG DAC+LVEYAGLNPFGGLRSDSIP+AGCPV+NLRQTLDDLTRNG+SVCIVEEVQGPTQAR RK RFISGHAHPG+PYVFGLV DD DLDFPEPMPVVG+SRSAKGYC++SVLETMKTYSAEDGLTEEA+VTKLRTC+ HHLFLH SLKHNSSGT RWGEFGEGGLLWGECNAR FEWF+G+PVNEL+ KVKELYGL+ ++TFRNVTVAS NRP LHLGTATQIGA+ TEGIP L+KVLLPS+C GLP+ Y++DLLLNPP+YEIASTIQ CK MS+I CS+PEFTCV AKLVKLLESKE NHIEFCKIK+VLD+++Q++ NSEL+EILKLL+DPTW ATGL ++ E LV E + VS RIGEIISLDG+NDQ+I S+ IP++FFE +ESSWKGRVKRIHL E F EV+ AAEALS+A+ EDF+PI+SRI+A+TAPLGGP+GEILYAREH AVWFKGKRFAPSVWAGTPGEEQIKQLRPA+DSKGKKVGEEWFTT KVE AL RYHEAG +AK KVLELLRGLSAELQ KIN+LVFAS+LLVIAKALF HVSEGRRRKWVFP L+Q + + MK+ GLSPYWFDAA+G AV N VDM+SLF+LTGPNGGGKSSLLRSICAA+LLGICGFMVPAESA IPHFDSIMLH+KSYDSPADGKSSFQ+EMSE+RSII+ A+S+SLVL+DEICRGTETAKGTCIAGS+IETLD I CLGIVSTHLH
Sbjct: 129 MQMCRKPSSVLLVKRLTFSNLLGVDTTLKNGSLKEGTLNWEILQFKSKFPREVLLCRVGDFYEAIGTDACILVEYAGLNPFGGLRSDSIPRAGCPVVNLRQTLDDLTRNGFSVCIVEEVQGPTQARTRKSRFISGHAHPGSPYVFGLVGDDHDLDFPEPMPVVGISRSAKGYCMVSVLETMKTYSAEDGLTEEALVTKLRTCRCHHLFLHASLKHNSSGTCRWGEFGEGGLLWGECNARQFEWFDGNPVNELLKKVKELYGLEDDITFRNVTVASENRPSPLHLGTATQIGALPTEGIPCLLKVLLPSNCTGLPIMYVRDLLLNPPAYEIASTIQEACKLMSNITCSVPEFTCVPSAKLVKLLESKETNHIEFCKIKSVLDDILQLYTNSELNEILKLLMDPTWVATGLKVELETLVNECKSVSRRIGEIISLDGENDQKITSHPIIPNEFFEDMESSWKGRVKRIHLEEEFAEVDAAAEALSVAIEEDFLPIISRIRATTAPLGGPKGEILYAREHEAVWFKGKRFAPSVWAGTPGEEQIKQLRPALDSKGKKVGEEWFTTMKVENALTRYHEAGDRAKTKVLELLRGLSAELQTKINILVFASMLLVIAKALFGHVSEGRRRKWVFPTLTQRQRSQNTGTLHGAEGMKITGLSPYWFDAAQGGAVRNDVDMKSLFLLTGPNGGGKSSLLRSICAAALLGICGFMVPAESAIIPHFDSIMLHMKSYDSPADGKSSFQVEMSEIRSIITRASSKSLVLIDEICRGTETAKGTCIAGSVIETLDAISCLGIVSTHLH 924
BLAST of DCAR_027355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6S0L6 ((DNA mismatch repair protein {ECO:0000313|EMBL:PSS35824.1}))
HSP 1 Score: 1355.5 bits (3507), Expect = 0.000e+0
Identity = 649/813 (79.83%), Postives = 717/813 (88.19%), Query Frame = 0
Match: A0A2R6S0L6 ((DNA mismatch repair protein {ECO:0000313|EMBL:PSS35824.1}))
HSP 1 Score: 1355.5 bits (3507), Expect = 0.000e+0
Identity = 649/813 (79.83%), Postives = 717/813 (88.19%), Query Frame = 0
Query: 1 MQMCRKSSTVQLISRLTYSNLLGLDVNLRNGSLKEGSINWEMLQFKSRFPREILLCRVGDFYEAIGIDACVLVEYAGLNPFGGLRSDSIPKAGCPVMNLRQTLDDLTRNGYSVCIVEEVQGPTQARARKRRFISGHAHPGNPYVFGLVEDDRDLDFPEPMPVVGVSRSAKGYCLISVLETMKTYSAEDGLTEEAVVTKLRTCQYHHLFLHRSLKHNSSGTSRWGEFGEGGLLWGECNARSFEWFEGDPVNELIIKVKELYGLDIEVTFRNVTVASVNRPRSLHLGTATQIGAISTEGIPSLIKVLLPSDCIGLPVSYIKDLLLNPPSYEIASTIQAICKHMSSIPCSIPEFTCVSPAKLVKLLESKEANHIEFCKIKNVLDEVIQMHGNSELHEILKLLIDPTWAATGLNIDFEKLVKESEMVSGRIGEIISLDGDNDQEICSYSAIPDDFFEMLESSWKGRVKRIHLNEAFTEVEKAAEALSLAVTEDFVPILSRIKASTAPLGGPRGEILYAREHGAVWFKGKRFAPSVWAGTPGEEQIKQLRPAVDSKGKKVGEEWFTTTKVEVALARYHEAGSKAKEKVLELLRGLSAELQAKINVLVFASVLLVIAKALFAHVSEGRRRKWVFPVLSQF---------DKGGSMKLVGLSPYWFDAAEGNAVLNTVDMQSLFILTGPNGGGKSSLLRSICAASLLGICGFMVPAESASIPHFDSIMLHLKSYDSPADGKSSFQIEMSEVRSIISGATSRSLVLVDEICRGTETAKGTCIAGSIIETLDFIGCLGIVSTHLHEQINYIKESEE-IRRAM 803
MQ+CRK STVQLI RL YSNLLGLDVNL+NGSLKEG +NWE+LQFKS+FPRE+LLCRVGDFYEAIGIDAC+LVEYAGLNPFGGLRSDS+P+AGCPVMNLRQTLDDLT NGYSVCIVEEVQGPTQAR+RK RFISGHAHPG+PYVFGLV D DLDFPEPMPVVG+SRSAKGYC+ISVLETMKTYS +D LTEEA+VTKLRTCQYHHLFLH SLKHNSSGT RWGEFGEGGLLWGEC AR FEWFEG+PVNEL+ KVKELYGL+ +VTFRN+TV S NRPR LHLGTATQIG I TEGIP L+KVLLPSDC GLPV YI+DLLLNPP+Y IASTIQAIC+ MS++ CSIPEF+C+S KLVKLLE +EANHIEFCKIK VLDE++QM+ NSEL E LKLL+DPTW ATGL IDFEKLV E E S RIGE+I L+G+ DQ I SY IP +FFE +ESSWKGR+KRIHL EAF EVEKAAE LS+AVTEDF+PI+SRIKAST P GGP+GEI YAREH +VWFKGKRF P+VWAGTPGE QIKQLR AVDSKG+KVGEEWFTT KVE AL RYHEAG+KAK KVLELLR LSAEL+A+IN+LVF+S LLVIAKALFAHVSEGRRRKWVFP L+ F D MK+ GLSPYWFD A+G+AV NTVDM+SLF+LTGPNGGGKSSLLRSICAASLLGICG M+PAESA IPHFDSIMLH+KSYDSP+DGKSSFQIEMSE+RSI++GATSRSLVLVDEICRGTETAKGTCIAGSI+ETLD IGCLGIVSTHLH N E++ + +AM
Sbjct: 86 MQLCRKPSTVQLIKRLKYSNLLGLDVNLKNGSLKEGMLNWEILQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRSDSVPRAGCPVMNLRQTLDDLTCNGYSVCIVEEVQGPTQARSRKGRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRSAKGYCIISVLETMKTYSTDDELTEEALVTKLRTCQYHHLFLHTSLKHNSSGTCRWGEFGEGGLLWGECRARPFEWFEGNPVNELLSKVKELYGLEDKVTFRNITVVSENRPRPLHLGTATQIGVIRTEGIPCLLKVLLPSDCTGLPVLYIQDLLLNPPAYAIASTIQAICRLMSNVKCSIPEFSCISSGKLVKLLELREANHIEFCKIKCVLDEILQMYRNSELRETLKLLMDPTWVATGLKIDFEKLVSECEQASCRIGEMIFLEGERDQTISSYPHIPSEFFEDMESSWKGRIKRIHLEEAFIEVEKAAELLSVAVTEDFLPIISRIKASTTPFGGPKGEISYAREHESVWFKGKRFTPAVWAGTPGEVQIKQLRAAVDSKGRKVGEEWFTTAKVEDALTRYHEAGAKAKAKVLELLRTLSAELEAQINILVFSSTLLVIAKALFAHVSEGRRRKWVFPTLAPFLWLKDTESLDAADGMKITGLSPYWFDIAQGSAVQNTVDMRSLFLLTGPNGGGKSSLLRSICAASLLGICGLMIPAESALIPHFDSIMLHMKSYDSPSDGKSSFQIEMSEIRSIMTGATSRSLVLVDEICRGTETAKGTCIAGSIVETLDEIGCLGIVSTHLHGIFNLPLETKHTVHKAM 898
BLAST of DCAR_027355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068TVF0 (DNA_MISMATCH_REPAIR_2 domain-containing protein {ECO:0000259|PROSITE:PS00486})
HSP 1 Score: 1355.12 bits (3506), Expect = 0.000e+0
Identity = 639/796 (80.28%), Postives = 715/796 (89.82%), Query Frame = 0
Match: A0A068TVF0 (DNA_MISMATCH_REPAIR_2 domain-containing protein {ECO:0000259|PROSITE:PS00486})
HSP 1 Score: 1355.12 bits (3506), Expect = 0.000e+0
Identity = 639/796 (80.28%), Postives = 715/796 (89.82%), Query Frame = 0
Query: 1 MQMCRKSSTVQLISRLTYSNLLGLDVNLRNGSLKEGSINWEMLQFKSRFPREILLCRVGDFYEAIGIDACVLVEYAGLNPFGGLRSDSIPKAGCPVMNLRQTLDDLTRNGYSVCIVEEVQGPTQARARKRRFISGHAHPGNPYVFGLVEDDRDLDFPEPMPVVGVSRSAKGYCLISVLETMKTYSAEDGLTEEAVVTKLRTCQYHHLFLHRSLKHNSSGTSRWGEFGEGGLLWGECNARSFEWFEGDPVNELIIKVKELYGLDIEVTFRNVTVASVNRPRSLHLGTATQIGAISTEGIPSLIKVLLPSDCIGLPVSYIKDLLLNPPSYEIASTIQAICKHMSSIPCSIPEFTCVSPAKLVKLLESKEANHIEFCKIKNVLDEVIQMHGNSELHEILKLLIDPTWAATGLNIDFEKLVKESEMVSGRIGEIISLDGDNDQEICSYSAIPDDFFEMLESSWKGRVKRIHLNEAFTEVEKAAEALSLAVTEDFVPILSRIKASTAPLGGPRGEILYAREHGAVWFKGKRFAPSVWAGTPGEEQIKQLRPAVDSKGKKVGEEWFTTTKVEVALARYHEAGSKAKEKVLELLRGLSAELQAKINVLVFASVLLVIAKALFAHVSEGRRRKWVFPVLSQ---------FDKGGSMKLVGLSPYWFDAAEGNAVLNTVDMQSLFILTGPNGGGKSSLLRSICAASLLGICGFMVPAESASIPHFDSIMLHLKSYDSPADGKSSFQIEMSEVRSIISGATSRSLVLVDEICRGTETAKGTCIAGSIIETLDFIGCLGIVSTHLH 787
MQMC K ST+ L+ RL Y NLLG+D NL+NGSLKEG++NWEMLQFKS+FPRE+LLCRVGDFYEAIGIDAC+LVEYAGLNPFGGLRSDSIP+AGCPV+NLRQTLDDLTR+G+SVCIVEEVQGPT AR RK RFISGHAHPG+PYVFGLVEDDRD+DFPEPMPVVG+SRSAKGYC+ISVLETMKT+S EDGLTEEA+VTKLRTCQ HHLFLH SLKHNSSGT RWGEFGEGGLLWGECNAR FEWF+G+P++EL+ KVKELYGLD VTFRNVTVAS NRPR L+LGTATQIGAI TEGIPSL+KVLLPS+C+GLPV Y+K LLLNPP+YEIA TIQ ICK MS++ CSIP+FTC AKLVKLLE +EANHIEFCKIK++LD+++QMH NSEL E+LKLL+DPTW ATGL IDFE LV E E+VS RIGEIISLDG+ DQ+ Y IP+DFFE +ESSWKGRVKRIHL EAF EVE AAEALSLAV E F PILSRIKA+TAPLGGP+GEILYAREH ++WFKGKRF P+VWAGTPGEEQIKQL+PA+DSKGKKVGEEWFTT KVE AL RYH+AG+KAK KVL+LLRGLS+ELQ KIN+LVFAS+LLVI+KALF+HVSEGRRRKWVFP L++ + MK+ GLSPYWFDAA G AV NTVDMQSLF+LTGPNGGGKSSLLRSICAA+LLGICGFMVPAESA IPHFDS+ LH+KSYDSPADGKSSFQIEMSE+RSI+SGATS+SLVL+DEICRGTETAKGTCIAGS++ETLD IGCLG+VSTHLH
Sbjct: 72 MQMCTKPSTISLVKRLAYDNLLGVDSNLKNGSLKEGNLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRSDSIPRAGCPVVNLRQTLDDLTRHGFSVCIVEEVQGPTHARGRKSRFISGHAHPGSPYVFGLVEDDRDVDFPEPMPVVGISRSAKGYCIISVLETMKTFSVEDGLTEEAIVTKLRTCQCHHLFLHSSLKHNSSGTCRWGEFGEGGLLWGECNARQFEWFDGNPLDELLFKVKELYGLDNVVTFRNVTVASENRPRPLYLGTATQIGAIQTEGIPSLLKVLLPSNCVGLPVLYMKGLLLNPPAYEIALTIQEICKLMSNVACSIPDFTCFPSAKLVKLLELREANHIEFCKIKSMLDQILQMHRNSELKEVLKLLMDPTWVATGLKIDFETLVSECELVSRRIGEIISLDGETDQKSSFYPNIPNDFFEDMESSWKGRVKRIHLEEAFIEVENAAEALSLAVAEAFDPILSRIKATTAPLGGPKGEILYAREHESIWFKGKRFVPTVWAGTPGEEQIKQLKPALDSKGKKVGEEWFTTLKVEEALVRYHDAGAKAKAKVLDLLRGLSSELQTKINILVFASMLLVISKALFSHVSEGRRRKWVFPTLTKSWGTEDGEPSEGNHQMKITGLSPYWFDAAGGRAVDNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGICGFMVPAESAVIPHFDSVTLHMKSYDSPADGKSSFQIEMSEIRSIVSGATSKSLVLIDEICRGTETAKGTCIAGSVVETLDAIGCLGVVSTHLH 867
BLAST of DCAR_027355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A097PJG4 ((MSH1 {ECO:0000313|EMBL:AIU48164.1}) (Fragment))
HSP 1 Score: 1353.96 bits (3503), Expect = 0.000e+0
Identity = 638/787 (81.07%), Postives = 714/787 (90.72%), Query Frame = 0
Match: A0A097PJG4 ((MSH1 {ECO:0000313|EMBL:AIU48164.1}) (Fragment))
HSP 1 Score: 1353.96 bits (3503), Expect = 0.000e+0
Identity = 638/787 (81.07%), Postives = 714/787 (90.72%), Query Frame = 0
Query: 1 MQMCRKSSTVQLISRLTYSNLLGLDVNLRNGSLKEGSINWEMLQFKSRFPREILLCRVGDFYEAIGIDACVLVEYAGLNPFGGLRSDSIPKAGCPVMNLRQTLDDLTRNGYSVCIVEEVQGPTQARARKRRFISGHAHPGNPYVFGLVEDDRDLDFPEPMPVVGVSRSAKGYCLISVLETMKTYSAEDGLTEEAVVTKLRTCQYHHLFLHRSLKHNSSGTSRWGEFGEGGLLWGECNARSFEWFEGDPVNELIIKVKELYGLDIEVTFRNVTVASVNRPRSLHLGTATQIGAISTEGIPSLIKVLLPSDCIGLPVSYIKDLLLNPPSYEIASTIQAICKHMSSIPCSIPEFTCVSPAKLVKLLESKEANHIEFCKIKNVLDEVIQMHGNSELHEILKLLIDPTWAATGLNIDFEKLVKESEMVSGRIGEIISLDGDNDQEICSYSAIPDDFFEMLESSWKGRVKRIHLNEAFTEVEKAAEALSLAVTEDFVPILSRIKASTAPLGGPRGEILYAREHGAVWFKGKRFAPSVWAGTPGEEQIKQLRPAVDSKGKKVGEEWFTTTKVEVALARYHEAGSKAKEKVLELLRGLSAELQAKINVLVFASVLLVIAKALFAHVSEGRRRKWVFPVLSQFDKGGSMKLVGLSPYWFDAAEGNAVLNTVDMQSLFILTGPNGGGKSSLLRSICAASLLGICGFMVPAESASIPHFDSIMLHLKSYDSPADGKSSFQIEMSEVRSIISGATSRSLVLVDEICRGTETAKGTCIAGSIIETLDFIGCLGIVSTHLH 787
+QMCRK ST+ L++RL YSNLLGLDVNL+NGSLKEG++NWEMLQFKS+FPRE+LLCRVGDFYEAIGIDAC+LVEYAGLNPFGGLR +SIPKAGCPV+NLRQTLDDLTRNGYSVCIVEEVQGPTQAR+RK RFISGHAHPG+PYVFGLV D DLDFPEPMPV+GVSRSAKGYC+IS+LETMKTYS EDGLTE+A+VTKLRT +YHHLFLH SL+ N+SGTSRWGE+GEGGLLWGEC AR FEWFEGDPV EL++KVKELYGL+ EVTFRNVTV+ NRPR LHLGTATQIGAI TEGIP L+KVLLPS+C GLP+ Y++DLLLNPP+YEIASTIQAICK MS + CSIPEFTCV+PAKLVKLLE +EANHIEFC+IKNVLDE++ M+GNSEL+EIL+LL+DPTW TGL IDFE LV+E + S RIGE+ISLDG++DQ+ICSY IP +FFE +ES+WKGRVKRIH+ EVE AAEALSLAVTEDF+PI+SRIKA+TAPLGGP+GEILYAREH AVWFKGK+F P+VWA TPGEEQIKQL+PAVDSKG+KVGEEWF+T KVE AL RYHEAG+KAK KVLELLRGLS+ELQ KIN+LVFAS+LLVI KALFAHVSEGRRRKWVFP L GLSPYWFDAAEG+AV NTVDMQSLF+LTGPNGGGKSSLLRSICAASLLGICG MVPAESASIP+FD+IMLH+KSYDSPADGKSSFQ+EMSE+RSI++ TSRSLVL+DEICRGTETAKGTCIAGSIIETLD IGCLGIVSTHLH
Sbjct: 9 LQMCRKPSTLHLVNRLKYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRPESIPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISGHAHPGSPYVFGLVGIDHDLDFPEPMPVIGVSRSAKGYCIISILETMKTYSLEDGLTEDALVTKLRTSRYHHLFLHTSLRQNTSGTSRWGEYGEGGLLWGECIARHFEWFEGDPVIELLLKVKELYGLENEVTFRNVTVSYENRPRPLHLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPILYVRDLLLNPPAYEIASTIQAICKLMSKVTCSIPEFTCVAPAKLVKLLELREANHIEFCRIKNVLDEILHMYGNSELNEILELLMDPTWVVTGLKIDFETLVEECRLASVRIGEMISLDGESDQKICSYDNIPSEFFEDMESTWKGRVKRIHIEPEIAEVEMAAEALSLAVTEDFLPIISRIKATTAPLGGPKGEILYAREHEAVWFKGKKFRPTVWASTPGEEQIKQLKPAVDSKGRKVGEEWFSTLKVEEALERYHEAGAKAKAKVLELLRGLSSELQTKINILVFASMLLVIGKALFAHVSEGRRRKWVFPALKN----------GLSPYWFDAAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAASLLGICGLMVPAESASIPYFDAIMLHMKSYDSPADGKSSFQVEMSEIRSIVTATTSRSLVLIDEICRGTETAKGTCIAGSIIETLDNIGCLGIVSTHLH 785
BLAST of DCAR_027355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6WPR7 ((DNA mismatch repair protein MSH1, mitochondrial-like {ECO:0000313|RefSeq:XP_027116686.1}))
HSP 1 Score: 1353.96 bits (3503), Expect = 0.000e+0
Identity = 639/796 (80.28%), Postives = 715/796 (89.82%), Query Frame = 0
Match: A0A6P6WPR7 ((DNA mismatch repair protein MSH1, mitochondrial-like {ECO:0000313|RefSeq:XP_027116686.1}))
HSP 1 Score: 1353.96 bits (3503), Expect = 0.000e+0
Identity = 639/796 (80.28%), Postives = 715/796 (89.82%), Query Frame = 0
Query: 1 MQMCRKSSTVQLISRLTYSNLLGLDVNLRNGSLKEGSINWEMLQFKSRFPREILLCRVGDFYEAIGIDACVLVEYAGLNPFGGLRSDSIPKAGCPVMNLRQTLDDLTRNGYSVCIVEEVQGPTQARARKRRFISGHAHPGNPYVFGLVEDDRDLDFPEPMPVVGVSRSAKGYCLISVLETMKTYSAEDGLTEEAVVTKLRTCQYHHLFLHRSLKHNSSGTSRWGEFGEGGLLWGECNARSFEWFEGDPVNELIIKVKELYGLDIEVTFRNVTVASVNRPRSLHLGTATQIGAISTEGIPSLIKVLLPSDCIGLPVSYIKDLLLNPPSYEIASTIQAICKHMSSIPCSIPEFTCVSPAKLVKLLESKEANHIEFCKIKNVLDEVIQMHGNSELHEILKLLIDPTWAATGLNIDFEKLVKESEMVSGRIGEIISLDGDNDQEICSYSAIPDDFFEMLESSWKGRVKRIHLNEAFTEVEKAAEALSLAVTEDFVPILSRIKASTAPLGGPRGEILYAREHGAVWFKGKRFAPSVWAGTPGEEQIKQLRPAVDSKGKKVGEEWFTTTKVEVALARYHEAGSKAKEKVLELLRGLSAELQAKINVLVFASVLLVIAKALFAHVSEGRRRKWVFPVLSQ---------FDKGGSMKLVGLSPYWFDAAEGNAVLNTVDMQSLFILTGPNGGGKSSLLRSICAASLLGICGFMVPAESASIPHFDSIMLHLKSYDSPADGKSSFQIEMSEVRSIISGATSRSLVLVDEICRGTETAKGTCIAGSIIETLDFIGCLGIVSTHLH 787
MQMC K ST+ L+ RL Y NLLG+D NL+NGSLKEG++NWEMLQFKS+FPRE+LLCRVGDFYEAIGIDAC+LVEYAGLNPFGGLRSDSIP+AGCPV+NLRQTLDDLTR+G+SVCIVEEVQGPT AR RK RFISGHAHPG+PYVFGLVEDDRD+DFPEPMPVVG+SRSAKGYC+ISVLETMKT+S EDGLTEEA+VTKLRTCQ HHLFLH SLKHNSSGT RWGEFGEGGLLWGECNAR FEWF+G+P++EL+ KVKELYGLD VTFRNVTVAS NRPR L+LGTATQIGAI TEGIPSL+KVLLPS+C+GLPV Y+K LLLNPP+YEIA TIQ ICK MS++ CSIP+FTC AKLVKLLE +EANHIEFCKIK++LD+++QMH NSEL E+LKLL+DPTW ATGL IDFE LV E E+VS RIGEIISLDG+ DQ+ Y IP+DFFE +ESSWKGRVKRIHL EAF EVE AAEALSLAV E F PILSRIKA+TAPLGGP+GEILYAREH ++WFKGKRF P+VWAGTPGEEQIKQL+PA+DSKGKKVGEEWFTT KVE AL RYH+AG+KAK KVL+LLRGLS+ELQ KIN+LVFAS+LLVI+KALF+HVSEGRRRKWVFP L++ + MK+ GLSPYWFDAA G AV NTVDMQSLF+LTGPNGGGKSSLLRSICAA+LLGICGFMVPAESA IPHFDS+ LH+KSYDSPADGKSSFQIEMSE+RSI+SGATS+SLVL+DEICRGTETAKGTCIAGS++ETLD IGCLG+VSTHLH
Sbjct: 90 MQMCTKPSTISLVKRLAYDNLLGVDSNLKNGSLKEGNLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRSDSIPRAGCPVVNLRQTLDDLTRHGFSVCIVEEVQGPTHARGRKSRFISGHAHPGSPYVFGLVEDDRDVDFPEPMPVVGISRSAKGYCIISVLETMKTFSVEDGLTEEAIVTKLRTCQCHHLFLHSSLKHNSSGTCRWGEFGEGGLLWGECNARQFEWFDGNPLDELLFKVKELYGLDNVVTFRNVTVASENRPRPLYLGTATQIGAIQTEGIPSLLKVLLPSNCVGLPVLYMKGLLLNPPAYEIALTIQEICKLMSNVACSIPDFTCFPSAKLVKLLELREANHIEFCKIKSMLDQILQMHRNSELKEVLKLLMDPTWVATGLKIDFETLVSECELVSRRIGEIISLDGETDQKSSFYPNIPNDFFEDMESSWKGRVKRIHLEEAFIEVENAAEALSLAVAEAFDPILSRIKATTAPLGGPKGEILYAREHESIWFKGKRFVPTVWAGTPGEEQIKQLKPALDSKGKKVGEEWFTTLKVEEALVRYHDAGAKAKAKVLDLLRGLSSELQTKINILVFASMLLVISKALFSHVSEGRRRKWVFPTLTKSWGTEDGEPSEGNHQMKITGLSPYWFDAAGGRAVDNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGICGFMVPAESAVIPHFDSVTLHMKSYDSPADGKSSFQIEMSEIRSIVSGATSKSLVLIDEICRGTETAKGTCIAGSVVETLDAIGCLGVVSTHLH 885
BLAST of DCAR_027355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A200PVR9 ((GIY-YIG nuclease superfamily {ECO:0000313|EMBL:OVA02308.1}))
HSP 1 Score: 1351.65 bits (3497), Expect = 0.000e+0
Identity = 641/813 (78.84%), Postives = 717/813 (88.19%), Query Frame = 0
Match: A0A200PVR9 ((GIY-YIG nuclease superfamily {ECO:0000313|EMBL:OVA02308.1}))
HSP 1 Score: 1351.65 bits (3497), Expect = 0.000e+0
Identity = 641/813 (78.84%), Postives = 717/813 (88.19%), Query Frame = 0
Query: 1 MQMCRKSSTVQLISRLTYSNLLGLDVNLRNGSLKEGSINWEMLQFKSRFPREILLCRVGDFYEAIGIDACVLVEYAGLNPFGGLRSDSIPKAGCPVMNLRQTLDDLTRNGYSVCIVEEVQGPTQARARKRRFISGHAHPGNPYVFGLVEDDRDLDFPEPMPVVGVSRSAKGYCLISVLETMKTYSAEDGLTEEAVVTKLRTCQYHHLFLHRSLKHNSSGTSRWGEFGEGGLLWGECNARSFEWFEGDPVNELIIKVKELYGLDIEVTFRNVTVASVNRPRSLHLGTATQIGAISTEGIPSLIKVLLPSDCIGLPVSYIKDLLLNPPSYEIASTIQAICKHMSSIPCSIPEFTCVSPAKLVKLLESKEANHIEFCKIKNVLDEVIQMHGNSELHEILKLLIDPTWAATGLNIDFEKLVKESEMVSGRIGEIISLDGDNDQEICSYSAIPDDFFEMLESSWKGRVKRIHLNEAFTEVEKAAEALSLAVTEDFVPILSRIKASTAPLGGPRGEILYAREHGAVWFKGKRFAPSVWAGTPGEEQIKQLRPAVDSKGKKVGEEWFTTTKVEVALARYHEAGSKAKEKVLELLRGLSAELQAKINVLVFASVLLVIAKALFAHVSEGRRRKWVFPVLSQF---------DKGGSMKLVGLSPYWFDAAEGNAVLNTVDMQSLFILTGPNGGGKSSLLRSICAASLLGICGFMVPAESASIPHFDSIMLHLKSYDSPADGKSSFQIEMSEVRSIISGATSRSLVLVDEICRGTETAKGTCIAGSIIETLDFIGCLGIVSTHLHEQINY-IKESEEIRRAM 803
MQMCRK S++QL+ RLTYSNLLGLDV L+NGSLKEG++NWE+LQFKSRFPRE+LLCRVGDFYEAIGIDACVLVE+AGLNPFGGLRSDSIP+AGCPVMNLRQTLDDLTR+GYSVCIVEEVQGPTQAR+RK RFISGHAHPG+PYVFGL D D+DFPEPMPVVGVSRSAKGYC++ VLETMKT+S EDGLTEEA+VTKL TC+YHHLFLH SL++NSSGTSRWGEFGEGGLLWGEC+ R FEWF+G+PV E++ KV+ELYGLD EV FRNVTV+S RPR LHLGTATQIGAI TEGIPSL+KVLLPS+C GLP+ Y++DLLLNPP+Y IAS IQA CK MSS+ CSIPEFTCVS AKLVKLLES+EANHIEFC+IKNV+DE+ QMH NSEL IL+LL+DPTW ATGL I+F LV E E +S RIG +ISLDG+NDQ I S IP DFFE +ESSWKGRVKRIH EAF EVE+AAEALS+AVTEDF+PI+SR+KA+TAPLGGPRGEILYAREH AVWFKGKRFAPS+WAGTPGEEQIKQLRPA DSKG+KVGEEWFTT KVE AL RYHEAG+KAK KVLELLR LSA LQ KIN+LVFAS+LL+IAKALF+HVSEGRRRKWVFP L +F D MK+ GLSPYWFD A+G+A+ NTV+MQSLF+LTGPNGGGKSSLLRS+C +LLGICG MVPAE A IPHFDSIMLH+KSYDSPADGKSSFQIEMSE+RSII+GATSRSLVLVDEICRGTETAKG CIAGSIIETLD IGCLGIVSTHLH + +K + + +AM
Sbjct: 134 MQMCRKPSSIQLVKRLTYSNLLGLDVTLKNGSLKEGTLNWEILQFKSRFPREVLLCRVGDFYEAIGIDACVLVEHAGLNPFGGLRSDSIPRAGCPVMNLRQTLDDLTRSGYSVCIVEEVQGPTQARSRKGRFISGHAHPGSPYVFGLAGVDHDVDFPEPMPVVGVSRSAKGYCIVLVLETMKTFSLEDGLTEEAIVTKLHTCRYHHLFLHTSLRNNSSGTSRWGEFGEGGLLWGECSGRHFEWFDGNPVTEVLCKVRELYGLDHEVEFRNVTVSSEKRPRPLHLGTATQIGAIPTEGIPSLLKVLLPSNCSGLPILYLRDLLLNPPTYAIASAIQATCKLMSSVTCSIPEFTCVSAAKLVKLLESREANHIEFCRIKNVVDEISQMHRNSELDNILQLLLDPTWVATGLKIEFATLVSECEGISERIGGMISLDGENDQRISSSRVIPSDFFEAMESSWKGRVKRIHAEEAFAEVERAAEALSVAVTEDFIPIVSRVKATTAPLGGPRGEILYAREHEAVWFKGKRFAPSIWAGTPGEEQIKQLRPATDSKGRKVGEEWFTTKKVEDALIRYHEAGAKAKLKVLELLRRLSAALQTKINILVFASMLLIIAKALFSHVSEGRRRKWVFPALVEFLKTKDKNSSDGSNKMKITGLSPYWFDVAQGSAIHNTVEMQSLFLLTGPNGGGKSSLLRSVCTVALLGICGLMVPAEFALIPHFDSIMLHMKSYDSPADGKSSFQIEMSEIRSIITGATSRSLVLVDEICRGTETAKGACIAGSIIETLDNIGCLGIVSTHLHGIFSLPLKTNNTVYKAM 946
BLAST of DCAR_027355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P9EV40 ((DNA mismatch repair protein MSH1, mitochondrial-like isoform X1 {ECO:0000313|RefSeq:XP_035547743.1}))
HSP 1 Score: 1350.11 bits (3493), Expect = 0.000e+0
Identity = 640/796 (80.40%), Postives = 716/796 (89.95%), Query Frame = 0
Match: A0A6P9EV40 ((DNA mismatch repair protein MSH1, mitochondrial-like isoform X1 {ECO:0000313|RefSeq:XP_035547743.1}))
HSP 1 Score: 1350.11 bits (3493), Expect = 0.000e+0
Identity = 640/796 (80.40%), Postives = 716/796 (89.95%), Query Frame = 0
Query: 1 MQMCRKSSTVQLISRLTYSNLLGLDVNLRNGSLKEGSINWEMLQFKSRFPREILLCRVGDFYEAIGIDACVLVEYAGLNPFGGLRSDSIPKAGCPVMNLRQTLDDLTRNGYSVCIVEEVQGPTQARARKRRFISGHAHPGNPYVFGLVEDDRDLDFPEPMPVVGVSRSAKGYCLISVLETMKTYSAEDGLTEEAVVTKLRTCQYHHLFLHRSLKHNSSGTSRWGEFGEGGLLWGECNARSFEWFEGDPVNELIIKVKELYGLDIEVTFRNVTVASVNRPRSLHLGTATQIGAISTEGIPSLIKVLLPSDCIGLPVSYIKDLLLNPPSYEIASTIQAICKHMSSIPCSIPEFTCVSPAKLVKLLESKEANHIEFCKIKNVLDEVIQMHGNSELHEILKLLIDPTWAATGLNIDFEKLVKESEMVSGRIGEIISLDGDNDQEICSYSAIPDDFFEMLESSWKGRVKRIHLNEAFTEVEKAAEALSLAVTEDFVPILSRIKASTAPLGGPRGEILYAREHGAVWFKGKRFAPSVWAGTPGEEQIKQLRPAVDSKGKKVGEEWFTTTKVEVALARYHEAGSKAKEKVLELLRGLSAELQAKINVLVFASVLLVIAKALFAHVSEGRRRKWVFPVLS---------QFDKGGSMKLVGLSPYWFDAAEGNAVLNTVDMQSLFILTGPNGGGKSSLLRSICAASLLGICGFMVPAESASIPHFDSIMLHLKSYDSPADGKSSFQIEMSEVRSIISGATSRSLVLVDEICRGTETAKGTCIAGSIIETLDFIGCLGIVSTHLH 787
++MCRK STVQL+ RLTYSNLLGLDVNL+NGSLKEG++NWEMLQFKSRFPRE+LLCRVGDFYEAIGIDAC+LVEYAGLNPFGGLRS+SIP+AGCPV+NLRQTLDDLTRNGYSVCIVEEVQGPTQAR RK RFISGHAHPG+PYVFGLV D DLDFPEPMPVVG+SRSA GYC+ VLETMKTYS+EDGLTEEA+V KLRTC+ HHLFLH SL++NSSGT RWGEFGEGGLLWGEC+AR FEWFEG+PVN+L++KVKELYGLD EVTFRNVTV+S NRP+ L LGTATQIGAI T+GIP L+KVLLPS+C GLPV YI+DLLLNPP+YEIAS IQ CK MS++ CSIPEFTCVS AKLVKLLE +EANHIEFC+IKNVLDE++ M+ NSEL EILKLL+DPTW ATGL IDFE LV E E S RIGE+ISLDG++DQ+I S S IP DFFE +ESSWKGRVKR H+ E FT+V++AA+ALSLAVTEDF+PI+ RIKA+TAPLGGP+GEILYAREH AVWFKGKRFAPSVWAGTPGEEQIK+L+PA DS+G+KVGEEWFTT VE AL RYHEAG+KAK KVLELLRGLS+ELQ+KIN+LVFAS+LLVIAKALFAHVSEGRRRKWVFP+L+ Q + MK+ GLSPYWF+ AEG+AV NTVDMQSLF+LTGPNGGGKSSLLRSICAA+LLGICGFMVPA SA IP FDSIMLH+KSYDSPADGKSSFQ+EMSE++SII+G T RSLVL+DEICRGTETAKGTCIAGSIIETLD IGCLGIVSTHLH
Sbjct: 90 LEMCRKPSTVQLVKRLTYSNLLGLDVNLKNGSLKEGTLNWEMLQFKSRFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRSESIPRAGCPVINLRQTLDDLTRNGYSVCIVEEVQGPTQARTRKSRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRSASGYCINLVLETMKTYSSEDGLTEEAIVAKLRTCRCHHLFLHASLRNNSSGTCRWGEFGEGGLLWGECSARQFEWFEGNPVNDLLLKVKELYGLDDEVTFRNVTVSSENRPQPLTLGTATQIGAIPTDGIPCLLKVLLPSNCSGLPVLYIRDLLLNPPAYEIASAIQETCKLMSNVTCSIPEFTCVSSAKLVKLLEQREANHIEFCRIKNVLDEILNMYKNSELSEILKLLMDPTWVATGLKIDFETLVSECEGASYRIGEMISLDGESDQKISSSSVIPSDFFEDMESSWKGRVKRRHIEEEFTDVQRAADALSLAVTEDFLPIIFRIKATTAPLGGPKGEILYAREHEAVWFKGKRFAPSVWAGTPGEEQIKRLKPASDSRGRKVGEEWFTTMNVEDALTRYHEAGAKAKVKVLELLRGLSSELQSKINILVFASMLLVIAKALFAHVSEGRRRKWVFPILAGCNRLKDVKQLNGAYGMKITGLSPYWFNVAEGSAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGICGFMVPAHSALIPQFDSIMLHMKSYDSPADGKSSFQVEMSEIQSIIAGTTKRSLVLIDEICRGTETAKGTCIAGSIIETLDKIGCLGIVSTHLH 885
BLAST of DCAR_027355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7N2LYM8 (DNA_MISMATCH_REPAIR_2 domain-containing protein {ECO:0000259|PROSITE:PS00486})
HSP 1 Score: 1349.34 bits (3491), Expect = 0.000e+0
Identity = 638/796 (80.15%), Postives = 716/796 (89.95%), Query Frame = 0
Match: A0A7N2LYM8 (DNA_MISMATCH_REPAIR_2 domain-containing protein {ECO:0000259|PROSITE:PS00486})
HSP 1 Score: 1349.34 bits (3491), Expect = 0.000e+0
Identity = 638/796 (80.15%), Postives = 716/796 (89.95%), Query Frame = 0
Query: 1 MQMCRKSSTVQLISRLTYSNLLGLDVNLRNGSLKEGSINWEMLQFKSRFPREILLCRVGDFYEAIGIDACVLVEYAGLNPFGGLRSDSIPKAGCPVMNLRQTLDDLTRNGYSVCIVEEVQGPTQARARKRRFISGHAHPGNPYVFGLVEDDRDLDFPEPMPVVGVSRSAKGYCLISVLETMKTYSAEDGLTEEAVVTKLRTCQYHHLFLHRSLKHNSSGTSRWGEFGEGGLLWGECNARSFEWFEGDPVNELIIKVKELYGLDIEVTFRNVTVASVNRPRSLHLGTATQIGAISTEGIPSLIKVLLPSDCIGLPVSYIKDLLLNPPSYEIASTIQAICKHMSSIPCSIPEFTCVSPAKLVKLLESKEANHIEFCKIKNVLDEVIQMHGNSELHEILKLLIDPTWAATGLNIDFEKLVKESEMVSGRIGEIISLDGDNDQEICSYSAIPDDFFEMLESSWKGRVKRIHLNEAFTEVEKAAEALSLAVTEDFVPILSRIKASTAPLGGPRGEILYAREHGAVWFKGKRFAPSVWAGTPGEEQIKQLRPAVDSKGKKVGEEWFTTTKVEVALARYHEAGSKAKEKVLELLRGLSAELQAKINVLVFASVLLVIAKALFAHVSEGRRRKWVFPVLSQ---------FDKGGSMKLVGLSPYWFDAAEGNAVLNTVDMQSLFILTGPNGGGKSSLLRSICAASLLGICGFMVPAESASIPHFDSIMLHLKSYDSPADGKSSFQIEMSEVRSIISGATSRSLVLVDEICRGTETAKGTCIAGSIIETLDFIGCLGIVSTHLH 787
+++CRK STVQLI RLTYSNLLGLDVNL+NGSLKEG++N E+LQFKSRFPRE+LLCRVGDFYEAIG+DAC+LVEYAGLNPFGGLRSDSIP+AGCPV+NLRQTLDDLTRNGYSVCIVEEVQGPTQAR+RK RFISGHAHPG+PYVFGLV D DLDFPEPMPVVG+SRSA+GYC+ VLETMKTYS+EDGLTEEA+VTKLRTC+YHHLFLH SL++NSSGT RWGEFGEGGLLWGEC+ R FEWFEG+PVNEL++KVKELYGLD +V FRNVTV+S NRP+ L LGTATQIGAI TEGIP L+KVLLPS+C GLPV YI+DLLLNPP+YEIAS IQA CK MS++ CSIPEFTCVS AKLVKLLE +EANHIEFC+IKN+LD+++ M+ NSEL+EILKLL+DPTW ATGL IDFE LV E E SGRIGE ISLDG++DQ+I S S IP DFFE +ESSWKGRVKRIH+ E +++ AAEALS AVTEDF+PI+SRIKA+TAP GGP+GEILYAREH AVWFKGKRFAPSVWAGTPGEEQIKQL+PA DS+G+KVGEEWFTT KVE AL RYHEAG+KAK KVLELLRGLS E+Q+KINVLVFAS+LLVIAKALFAHVSEGRRRKWVFP L++ D+ M+++GLSPYWFD AEG+AV NTV MQSLF+LTGPNGGGKSSLLRSICAA+LLGICGFMVPAESA IP +DSIMLH+KSYDSPADGKSSFQ+EMSE+RSIIS T RSLVL+DEICRGTETAKGTCIAGSIIETLD IGCLG+VSTHLH
Sbjct: 90 LKICRKPSTVQLIKRLTYSNLLGLDVNLKNGSLKEGTLNSEILQFKSRFPREVLLCRVGDFYEAIGMDACILVEYAGLNPFGGLRSDSIPRAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKGRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRSARGYCINLVLETMKTYSSEDGLTEEALVTKLRTCRYHHLFLHASLRNNSSGTCRWGEFGEGGLLWGECSGRQFEWFEGNPVNELLLKVKELYGLDDDVAFRNVTVSSENRPQPLTLGTATQIGAIPTEGIPCLLKVLLPSNCTGLPVLYIRDLLLNPPAYEIASKIQATCKLMSNVTCSIPEFTCVSSAKLVKLLEQREANHIEFCRIKNLLDDILHMYKNSELNEILKLLMDPTWVATGLKIDFETLVTECEWASGRIGETISLDGESDQKISSSSVIPSDFFEDMESSWKGRVKRIHIEEELAQLQSAAEALSSAVTEDFLPIISRIKATTAPFGGPKGEILYAREHEAVWFKGKRFAPSVWAGTPGEEQIKQLKPAADSRGRKVGEEWFTTMKVEDALMRYHEAGAKAKVKVLELLRGLSFEMQSKINVLVFASMLLVIAKALFAHVSEGRRRKWVFPTLAKSRRSKDVKPLDEAYGMEIIGLSPYWFDVAEGSAVHNTVAMQSLFLLTGPNGGGKSSLLRSICAAALLGICGFMVPAESALIPQYDSIMLHMKSYDSPADGKSSFQVEMSEIRSIISATTKRSLVLIDEICRGTETAKGTCIAGSIIETLDKIGCLGVVSTHLH 885
BLAST of DCAR_027355 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6H8T2 (DNA_MISMATCH_REPAIR_2 domain-containing protein {ECO:0000259|PROSITE:PS00486})
HSP 1 Score: 1349.34 bits (3491), Expect = 0.000e+0
Identity = 634/796 (79.65%), Postives = 715/796 (89.82%), Query Frame = 0
Match: F6H8T2 (DNA_MISMATCH_REPAIR_2 domain-containing protein {ECO:0000259|PROSITE:PS00486})
HSP 1 Score: 1349.34 bits (3491), Expect = 0.000e+0
Identity = 634/796 (79.65%), Postives = 715/796 (89.82%), Query Frame = 0
Query: 1 MQMCRKSSTVQLISRLTYSNLLGLDVNLRNGSLKEGSINWEMLQFKSRFPREILLCRVGDFYEAIGIDACVLVEYAGLNPFGGLRSDSIPKAGCPVMNLRQTLDDLTRNGYSVCIVEEVQGPTQARARKRRFISGHAHPGNPYVFGLVEDDRDLDFPEPMPVVGVSRSAKGYCLISVLETMKTYSAEDGLTEEAVVTKLRTCQYHHLFLHRSLKHNSSGTSRWGEFGEGGLLWGECNARSFEWFEGDPVNELIIKVKELYGLDIEVTFRNVTVASVNRPRSLHLGTATQIGAISTEGIPSLIKVLLPSDCIGLPVSYIKDLLLNPPSYEIASTIQAICKHMSSIPCSIPEFTCVSPAKLVKLLESKEANHIEFCKIKNVLDEVIQMHGNSELHEILKLLIDPTWAATGLNIDFEKLVKESEMVSGRIGEIISLDGDNDQEICSYSAIPDDFFEMLESSWKGRVKRIHLNEAFTEVEKAAEALSLAVTEDFVPILSRIKASTAPLGGPRGEILYAREHGAVWFKGKRFAPSVWAGTPGEEQIKQLRPAVDSKGKKVGEEWFTTTKVEVALARYHEAGSKAKEKVLELLRGLSAELQAKINVLVFASVLLVIAKALFAHVSEGRRRKWVFPVLSQ---------FDKGGSMKLVGLSPYWFDAAEGNAVLNTVDMQSLFILTGPNGGGKSSLLRSICAASLLGICGFMVPAESASIPHFDSIMLHLKSYDSPADGKSSFQIEMSEVRSIISGATSRSLVLVDEICRGTETAKGTCIAGSIIETLDFIGCLGIVSTHLH 787
MQMC+K STV L+ RL YSNLLG+D NL+NG+LKEG++NWEMLQFKS+FPRE+LLCRVGDFYEAIGIDAC+LVEYAGLNPFGGLRSDSIP+AGCPVMNLRQTLDDLTR+GYSVCIVEEVQGPTQAR+RK RFISGHAHPG+PYVFGLV D DLDFPEPMPVVG+SRSAKGY +I VLETMKT+S EDGLTEEA+VTKLRTC YHHL LH SL+ NSSGT RWGEFGEGGLLWGEC+AR FEWFEGDPV++L+ KVKELYG D +VTFRNVTV+S RPRSLHLGTATQIGAI TEGIP L+KVLLPS+C GLP+ Y++DLLLNPP+YEIAS IQA C+ M+++ CSIPEFTCVSPAKLVKLLE +EANHIEFC+IK+VLDE++QMH NS+L++ILKLL+DPTW ATGL IDF+ LV E E +S RIG++I LDG+NDQ+I + IP+DFFE +ES WKGRVKRIH+ EAF EVE+AAEALSLA++EDF+PI+SRIKA+TAPLGGP+GE++YAREH AVWFKGKRFAP WAGTPGEEQIKQLRPA+DSKG+KVG EWFTT KVE AL RYHEAG KAK +VLELLRGLSAELQ KIN+L+FAS+LLVIAKALFAHVSEGRRRKWVFP L + D MK+ GLSPYW D A+G+AV NTVDM+SLF+LTGPNGGGKSSLLRSICAA+LLGICGFMVPAESA IPHFDSIMLH+KSYDSPADGKSSFQIEMSE+RSII+GATSRSLVL+DEICRGTETAKGTCIAGSI+ETLD IGCLGIVSTHLH
Sbjct: 87 MQMCKKPSTVHLVKRLIYSNLLGVDPNLKNGNLKEGTLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRSDSIPRAGCPVMNLRQTLDDLTRSGYSVCIVEEVQGPTQARSRKGRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRSAKGYSIILVLETMKTFSVEDGLTEEALVTKLRTCHYHHLLLHTSLRRNSSGTCRWGEFGEGGLLWGECSARHFEWFEGDPVSQLLFKVKELYGFDDQVTFRNVTVSSEKRPRSLHLGTATQIGAIPTEGIPCLLKVLLPSNCTGLPLLYVRDLLLNPPAYEIASIIQATCRLMNNVTCSIPEFTCVSPAKLVKLLELREANHIEFCRIKSVLDEILQMHRNSDLNKILKLLMDPTWVATGLKIDFDTLVNECEWISARIGKMIFLDGENDQKISYHPIIPNDFFEDMESPWKGRVKRIHVEEAFAEVERAAEALSLAISEDFLPIISRIKATTAPLGGPKGEVVYAREHEAVWFKGKRFAPVAWAGTPGEEQIKQLRPAIDSKGRKVGLEWFTTVKVEDALTRYHEAGDKAKARVLELLRGLSAELQTKINILIFASMLLVIAKALFAHVSEGRRRKWVFPSLVELHRSKDMEPLDGANWMKITGLSPYWLDVAQGSAVHNTVDMKSLFLLTGPNGGGKSSLLRSICAAALLGICGFMVPAESALIPHFDSIMLHMKSYDSPADGKSSFQIEMSEMRSIITGATSRSLVLIDEICRGTETAKGTCIAGSIVETLDKIGCLGIVSTHLH 882
| Match Name | Stats | Description |
|---|---|---|
| V4U2Z9 | E-Value: 0.000e+0, PID: 81.12 | DNA_MISMATCH_REPAIR_2 domain-containing protein {E... [more] |
| A0A6I9SJ69 | E-Value: 0.000e+0, PID: 80.15 | (DNA mismatch repair protein MSH1, mitochondrial {... [more] |
| A0A2R6S0L6 | E-Value: 0.000e+0, PID: 79.83 | (DNA mismatch repair protein {ECO:0000313|EMBL:PSS... [more] |
| A0A068TVF0 | E-Value: 0.000e+0, PID: 80.28 | DNA_MISMATCH_REPAIR_2 domain-containing protein {E... [more] |
| A0A097PJG4 | E-Value: 0.000e+0, PID: 81.07 | (MSH1 {ECO:0000313|EMBL:AIU48164.1}) (Fragment)[more] |
| A0A6P6WPR7 | E-Value: 0.000e+0, PID: 80.28 | (DNA mismatch repair protein MSH1, mitochondrial-l... [more] |
| A0A200PVR9 | E-Value: 0.000e+0, PID: 78.84 | (GIY-YIG nuclease superfamily {ECO:0000313|EMBL:OV... [more] |
| A0A6P9EV40 | E-Value: 0.000e+0, PID: 80.40 | (DNA mismatch repair protein MSH1, mitochondrial-l... [more] |
| A0A7N2LYM8 | E-Value: 0.000e+0, PID: 80.15 | DNA_MISMATCH_REPAIR_2 domain-containing protein {E... [more] |
| F6H8T2 | E-Value: 0.000e+0, PID: 79.65 | DNA_MISMATCH_REPAIR_2 domain-containing protein {E... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |