DCAR_026866 | CarrotOmics

Resource Type:

Polypeptide

Name:

DCAR_026866

Identifier:

DCAR_026866.mRNA-protein

Sequence:

MEWNWNHVIWLALISLVSLVWHLKNRRGRSKLPPGPKGWPLIGNLLELGS
LPHRRLEALKKDYGPVVWLNIGPIKTMVILSAGAAEELFKNHDINFADRF
GNDSMRSHDYYMSSMAVGAYTSYWRTLRKICTVELFTNKRINETVLVRRR
SVDELLVWIEKEADKGASDGIEVISFVFAALFNMVGNLTLSRDLVDPYST
ISSEFCDTLSGFHQCLLHPNISDLFPWLSRFDLQGIRRRMDGYLGKAIEI
ISGFVKERVKERQKTQKLSSEQKKDFLDVLLDYRGTGRDELDSLSEHQVT
IFLMEMFIAGTHTSSTTTEWALSELLQNPDQMKKVKAELARVVGAKTRLQ
ESDIDNLPYLQAIMEETLRLHPPAPILLPRKAAQDTTFMGYNIPKNTQVL
VNSWAIGRDEENWKDALSFRPERFLNSNINSKGQNYELLPFGAGRRICPG
IPLAHRMVPLVLGSLLHHFEWELCDGLKKIDMTETLGATATKRELLRAIP
KLKTI*

Sequence Length:

506

Sequence Checksum:

daa602ee10693060d71ab9c24e5732e6

View location in JBrowse:

DCARv2_Chr8:28057432..28059025+

Organism:

Daucus carota subspecies sativus

Relationship:

There is 1 relationship.
Relationships
The polypeptide, DCAR_026866, derives from mRNA, DCAR_026866.

Blast Results:

The following BLAST results are available for this feature:

BLAST of DCAR_026866 vs. ExPASy Swiss-Prot and TrEMBL without DCAR

BLAST of DCAR_026866 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20

[Close]

BLAST of DCAR_026866 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U9X5Z7 ((Cytochrome P450 {ECO:0000313|EMBL:AQY76213.1}) (1.14.13.- {ECO:0000313|EMBL:AQY76213.1}))

HSP 1 Score: 759.985 bits (1961), Expect = 0.000e+0
Identity = 363/502 (72.31%), Postives = 433/502 (86.25%), Query Frame = 0

Query:    1 MEWNWNHVIWLALISLVSLVWHL--KNRRGRSKLPPGPKGWPLIGNLLELGSLPHRRLEALKKDYGPVVWLNIGPIKTMVILSAGAAEELFKNHDINFADRFGNDSMRSHDYYMSSMAVGAYTSYWRTLRKICTVELFTNKRINETVLVRRRSVDELLVWIEKEADKGASDGIEVISFVFAALFNMVGNLTLSRDLVDPYSTISSEFCDTLSGFHQCLLHPNISDLFPWLSRFDLQGIRRRMDGYLGKAIEIISGFVKERVKERQKTQKLSSEQKKDFLDVLLDYRGTGRDELDSLSEHQVTIFLMEMFIAGTHTSSTTTEWALSELLQNPDQMKKVKAELARVVGAKTRLQESDIDNLPYLQAIMEETLRLHPPAPILLPRKAAQDTTFMGYNIPKNTQVLVNSWAIGRDEENWKDALSFRPERFLNSNINSKGQNYELLPFGAGRRICPGIPLAHRMVPLVLGSLLHHFEWELCDGLKKIDMTETLGATATKRELLRAIP 500
            MEWNWN+V W  LISL+ LVWHL  KN   R  LPPGP+GWP+ GNL +LGSLPHR LE LK +YGPVVWLN+GP+KTMVILS+GAAEELFKN+D++FADRF ND+M SHDYY SSMA+GAYTSYWRTLR+ICT+ELFT KRINE VL+RR+  DE++ WIEKEA+KGAS GIEVI+FVF+A+FN+VGNLT+SRDLVDP ST+SSEF ++LSG HQ LL  NISDL P L RFD+QGIR+ +D  LGKAIEIISGFVKER ++R++  ++SSEQ+KDFLDVLLD+RGT +DE   L++HQ+TIFLMEMFIAGTHT+S TTEWA+ ELL NPD+MKKVK ELARVVG   +L+ESDIDNLPYLQAI+EETLRLHPPAP+ LPRKA  DT FMGYNIPK+TQV VN+WAIGR++ENW+DALSF+P+RFLN +IN KGQN+E +PFGAGRRICPG+PLAHRM+PL+LG+LLHHF+W+LC G   IDM ET+G  A K+E L A+P
Sbjct:    1 MEWNWNYVTWSILISLIPLVWHLRRKNSYRRFTLPPGPRGWPIFGNLFDLGSLPHRTLEKLKDEYGPVVWLNLGPVKTMVILSSGAAEELFKNNDLSFADRFQNDAMTSHDYYKSSMAIGAYTSYWRTLRRICTIELFTIKRINEAVLIRRKCADEMMSWIEKEAEKGASGGIEVINFVFSAIFNIVGNLTVSRDLVDPQSTMSSEFINSLSGLHQGLLRLNISDLVPCLRRFDIQGIRKELDDSLGKAIEIISGFVKERKEQRRQPLEISSEQRKDFLDVLLDFRGTSKDEPAKLTDHQLTIFLMEMFIAGTHTTSATTEWAMCELLLNPDKMKKVKDELARVVGGNKKLEESDIDNLPYLQAIVEETLRLHPPAPLTLPRKAMHDTKFMGYNIPKDTQVFVNAWAIGREKENWEDALSFKPDRFLNLSINYKGQNFEFIPFGAGRRICPGLPLAHRMLPLLLGTLLHHFDWKLCGGDTNIDMMETMGLGARKQEPLMAVP 502

[Close]

BLAST of DCAR_026866 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3Q8TIX5 ((Cytochrome P450 CYP76AE4 {ECO:0000313|EMBL:AZL40029.1}))

HSP 1 Score: 745.347 bits (1923), Expect = 0.000e+0
Identity = 354/502 (70.52%), Postives = 431/502 (85.86%), Query Frame = 0

Query:    1 MEWNWNHVIWLALISLVSLVWHL--KNRRGRSKLPPGPKGWPLIGNLLELGSLPHRRLEALKKDYGPVVWLNIGPIKTMVILSAGAAEELFKNHDINFADRFGNDSMRSHDYYMSSMAVGAYTSYWRTLRKICTVELFTNKRINETVLVRRRSVDELLVWIEKEADKGASDGIEVISFVFAALFNMVGNLTLSRDLVDPYSTISSEFCDTLSGFHQCLLHPNISDLFPWLSRFDLQGIRRRMDGYLGKAIEIISGFVKERVKERQKTQKLSSEQKKDFLDVLLDYRGTGRDELDSLSEHQVTIFLMEMFIAGTHTSSTTTEWALSELLQNPDQMKKVKAELARVVGAKTRLQESDIDNLPYLQAIMEETLRLHPPAPILLPRKAAQDTTFMGYNIPKNTQVLVNSWAIGRDEENWKDALSFRPERFLNSNINSKGQNYELLPFGAGRRICPGIPLAHRMVPLVLGSLLHHFEWELCDGLKKIDMTETLGATATKRELLRAIP 500
            MEWNWN+V W  LISL+SLVWHL  KN   R KLPPGP+GWP+ GNL +LGSLPHR LE LK +YGPVVWLN+GP+KTMVILS+ AAEEL+KN+D++FADRF ND+MRSHDYY SSMA+GAY SYWRTLR+ICT+ELFT KRIN+ VL+RR+  DE++ WIEKEA+KGAS GIEVI+FVF+A+FN+VGNLT+SRDLVDP ST+SSEF ++++G H+ LL  NISDL P LSRFD+QG+R+ MD  LGK  EIISGFVKER ++R++  ++SSEQ+KDFLDVLLD+ GT RDE   L++HQ+TIFLMEMF+AGTHTSS+TTEWA+ ELL  PD+MKKVK ELARVVG   +L+ESD+DNLPYLQAI+EETLRLHPP P+ LPRKA  DT FMGYNIPK TQV VN+WAIGR++E+W+DALSF+PERFL+S I+ KGQN+E +PFGAGRRICPG+PLAHRM+PL+LG+LLHHF+W+LC G  K+DM ET+G  A K+E L A+P
Sbjct:    1 MEWNWNYVTWSILISLISLVWHLRRKNSYRRFKLPPGPRGWPIFGNLFDLGSLPHRTLEKLKDEYGPVVWLNLGPVKTMVILSSVAAEELYKNNDLSFADRFQNDAMRSHDYYKSSMALGAYNSYWRTLRRICTIELFTIKRINDAVLIRRKCADEMISWIEKEAEKGASGGIEVINFVFSAIFNIVGNLTVSRDLVDPQSTMSSEFINSMTGLHEGLLRLNISDLVPSLSRFDIQGVRKEMDVSLGKVNEIISGFVKERKEQRRQRLEISSEQRKDFLDVLLDFSGTSRDEPAKLTDHQLTIFLMEMFLAGTHTSSSTTEWAMCELLLKPDKMKKVKDELARVVGGNRKLEESDMDNLPYLQAIVEETLRLHPPGPLTLPRKAMHDTKFMGYNIPKGTQVFVNAWAIGREKESWEDALSFKPERFLDSRISYKGQNFEFIPFGAGRRICPGLPLAHRMLPLLLGTLLHHFDWKLCGGETKMDMMETMGIGARKQEPLMAVP 502

[Close]

BLAST of DCAR_026866 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U9X5Y8 ((Cytochrome P450 {ECO:0000313|EMBL:AQY76212.1}) (1.14.13.- {ECO:0000313|EMBL:AQY76212.1}))

HSP 1 Score: 739.184 bits (1907), Expect = 0.000e+0
Identity = 349/506 (68.97%), Postives = 418/506 (82.61%), Query Frame = 0

Query:    1 MEWNWNHVIWLALISLVSLVWHLKNRRG--RSKLPPGPKGWPLIGNLLELGSLPHRRLEALKKDYGPVVWLNIGPIKTMVILSAGAAEELFKNHDINFADRFGNDSMRSHDYYMSSMAVGAYTSYWRTLRKICTVELFTNKRINETVLVRRRSVDELLVWIEKEADKGASDGIEVISFVFAALFNMVGNLTLSRDLVDPYSTISSEFCDTLSGFHQCLLHPNISDLFPWLSRFDLQGIRRRMDGYLGKAIEIISGFVKERVKERQKTQKLSSEQKKDFLDVLLDYRGTGRDELDSLSEHQVTIFLMEMFIAGTHTSSTTTEWALSELLQNPDQMKKVKAELARVVGAKTRLQESDIDNLPYLQAIMEETLRLHPPAPILLPRKAAQDTTFMGYNIPKNTQVLVNSWAIGRDEENWKDALSFRPERFLNSNINSKGQNYELLPFGAGRRICPGIPLAHRMVPLVLGSLLHHFEWELCDGLKKIDMTETLGATATKRELLRAIPKLKT 504
            M+WN N+VIWLAL+SL+SLVWHL+ +    RSKLPPGP+GWP+ GNL ++GSL HR  EALK+ YGPVVWLN+G +KTMV+LSAGAAEE FKNHD++F DRF NDSMRS D++  S+A G+Y++YWRTLR+ICT ELF NK+IN T+ +R++ VDELL WI+ E +K +S  I V  FVF+A FN++GNL LSR+LVDP S ISSEFC   +GF +C+  PNISDL PWL R DLQGIR+  +  L KAIEIIS FVKERV ERQ+ Q LSSEQ  DFLDVLLDYRGTG+DE   LSE QVT+F+MEMF AGT TSS T EWA+ ELLQNPDQMKK+K+ELA VVGA  +L ESDI+NLPYL AI++ETLRLHPPAP+L+PRKA QDT FMGY+IPKNTQV+VN WAIGRDE++W+D LSF+PERFL+SNIN KGQ YE LPFGAGRR+CPG+PLA+RMV L+LGSLLHHFEWELCD  K +DM ET+G T+ K ELL+AIPK K+
Sbjct:    1 MDWNENYVIWLALLSLISLVWHLRRKTSYRRSKLPPGPRGWPVFGNLFDIGSLSHRSQEALKQVYGPVVWLNLGFVKTMVLLSAGAAEEFFKNHDLSFVDRFINDSMRSLDHHTISIAFGSYSTYWRTLRRICTSELFANKKINSTMFIRQKCVDELLSWIQNEVEKSSSSRIVVRDFVFSASFNIMGNLMLSRNLVDPQSEISSEFCTAFAGFQECVGRPNISDLIPWLRRLDLQGIRKAAEFNLAKAIEIISEFVKERVTERQQKQDLSSEQ--DFLDVLLDYRGTGKDEPAKLSEFQVTVFIMEMFFAGTDTSSATIEWAMCELLQNPDQMKKIKSELAIVVGANKKLLESDIENLPYLHAIVQETLRLHPPAPLLIPRKAVQDTNFMGYSIPKNTQVMVNCWAIGRDEDSWEDTLSFKPERFLDSNINYKGQCYEFLPFGAGRRMCPGVPLANRMVHLILGSLLHHFEWELCDDEKILDMRETMGETSNKLELLQAIPKPKS 504

[Close]

BLAST of DCAR_026866 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6L5BAI7 ((Uncharacterized protein {ECO:0000313|EMBL:KAF1001612.1}))

HSP 1 Score: 733.021 bits (1891), Expect = 0.000e+0
Identity = 348/506 (68.77%), Postives = 412/506 (81.42%), Query Frame = 0

Query:    1 MEWNWNHVIWLALISLVSLVWHL--KNRRGRSKLPPGPKGWPLIGNLLELGSLPHRRLEALKKDYGPVVWLNIGPIKTMVILSAGAAEELFKNHDINFADRFGNDSMRSHDYYMSSMAVGAYTSYWRTLRKICTVELFTNKRINETVLVRRRSVDELLVWIEKEADKGASDGIEVISFVFAALFNMVGNLTLSRDLVDPYSTISSEFCDTLSGFHQCLLHPNISDLFPWLSRFDLQGIRRRMDGYLGKAIEIISGFVKERVKERQKTQKLSSEQKKDFLDVLLDYRGTGRDELDSLSEHQVTIFLMEMFIAGTHTSSTTTEWALSELLQNPDQMKKVKAELARVVGAKTRLQESDIDNLPYLQAIMEETLRLHPPAPILLPRKAAQDTTFMGYNIPKNTQVLVNSWAIGRDEENWKDALSFRPERFLNSNINSKGQNYELLPFGAGRRICPGIPLAHRMVPLVLGSLLHHFEWELCDGLKKIDMTETLGATATKRELLRAIPKLKT 504
            MEW  N V W  LISL+SLVWHL  KN   RSKLPPGP+GWP+ G +  LGS PHR LEAL++ YGPVVWLN+G + TMV+LSAGAAE+ FKNHD++F DRF  DS R HDYY  S+A G+ ++YWRTLR+ICT E+F NKRIN+TVL+R++ VDELL WIE E +K A   I V  FVF   FNM+GNLTLSR+L DP S ISSEFC  L+ FH+C+  PNISD+FPWL RFDLQGIR   D  LGKAIEIIS FVKER++ERQ+ Q+LSSEQ+ DFLDVLLDYRGTG+ E   LSE QVT+FLMEMF AGT TSS T EWA+ ELLQNP+QMKK+KAEL RVVG   ++QE+DI +LPYL AI+EETLR+HPPAP+L+PRKA +DT FMGY+IPKNTQV++N WAIGRDE++W+DALSF+PERFL+SNIN KGQ+YE LPFG+GRR+CPG+PLAHRMV LVLGSLLHHF+WELCD  K IDM ET+G +A K   L+AIPKLKT
Sbjct:    1 MEWE-NCVFWWTLISLISLVWHLRRKNNYRRSKLPPGPRGWPVFGYMFNLGSFPHRSLEALRQQYGPVVWLNLGFVNTMVLLSAGAAEDFFKNHDLSFVDRFTYDSTRPHDYYTVSIAFGSSSTYWRTLRRICTSEIFANKRINDTVLIRQKRVDELLSWIENEVEKSAGGRIVVRDFVFPTFFNMIGNLTLSRNLADPQSEISSEFCTALADFHECVGRPNISDIFPWLRRFDLQGIRTTADRSLGKAIEIISTFVKERMRERQQNQELSSEQQ-DFLDVLLDYRGTGKAEPAKLSEFQVTVFLMEMFFAGTETSSATIEWAMCELLQNPNQMKKIKAELVRVVGENNKVQENDIGSLPYLHAIVEETLRIHPPAPLLIPRKAVRDTNFMGYSIPKNTQVMINYWAIGRDEDSWEDALSFKPERFLDSNINYKGQSYEFLPFGSGRRMCPGLPLAHRMVHLVLGSLLHHFDWELCDDGKTIDMRETMGVSAKKLGPLQAIPKLKT 504

[Close]

BLAST of DCAR_026866 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U9X5Y5 ((Cytochrome P450 {ECO:0000313|EMBL:AQY76214.1}) (1.-.-.- {ECO:0000313|EMBL:AQY76214.1}))

HSP 1 Score: 712.605 bits (1838), Expect = 0.000e+0
Identity = 335/505 (66.34%), Postives = 408/505 (80.79%), Query Frame = 0

Query:    1 MEWNWNHVIWLALISLVSLVWHL-KNRRGRSKLPPGPKGWPLIGNLLELGSLPHRRLEALKKDYGPVVWLNIGPIKTMVILSAGAAEELFKNHDINFADRFGNDSMRSHDYYMSSMAVGAYTSYWRTLRKICTVELFTNKRINETVLVRRRSVDELLVWIEKEADKGASDGIEVISFVFAALFNMVGNLTLSRDLVDPYSTISSEFCDTLSGFHQCLLHPNISDLFPWLSRFDLQGIRRRMDGYLGKAIEIISGFVKERVKERQKTQKLSSEQKKDFLDVLLDYRGTGRDELDSLSEHQVTIFLMEMFIAGTHTSSTTTEWALSELLQNPDQMKKVKAELARVVGAKTRLQESDIDNLPYLQAIMEETLRLHPPAPILLPRKAAQDTTFMGYNIPKNTQVLVNSWAIGRDEENWKDALSFRPERFLNSNINSKGQNYELLPFGAGRRICPGIPLAHRMVPLVLGSLLHHFEWELCDGLK---KIDMTETLGATATKRELLRAIPK 501
            MEW WN+V+W  L SL+ L WHL KN   RSKLPPGP+GWP+IGN+ +LG+LPHR L ALK+ YGPVVWLN+GP+KTMVILSAGAAEELFKNHD++F DRF ND M+++DY  SSMA+G Y+ YWRTLR+ICT ELF+NKR+NETVLVR++ VDE+L WIEKE ++ A+  IEV  F+F A+FN++GNLTLS+DL  P S ++SEF   LSGF  CL  PNISDLFPWL   DLQG+RRR D  L KA++IISGFV ERVK+RQ  +  ++E  KDFLDV+LDY G G+DE   LS HQ+TIFLMEMFIAGT T+S T EWA+ ELL+NP+ MKK+KAEL +VVG    L+ESDI+NLPYLQAI++E+LRLH   P+ LPRKA QDT FMGYNIPKNTQVLVN WAIGRDEE+W+DALSFRPERFL S+   KGQNY+ +PFGAGRR+CPG+PL HR++PL+LGSLLHHF+W+LC+ +     IDM ET+G +A K   LRA+PK
Sbjct:    1 MEWMWNYVVWSILFSLMPLAWHLRKNSYRRSKLPPGPRGWPVIGNIFDLGTLPHRSLAALKQKYGPVVWLNLGPVKTMVILSAGAAEELFKNHDLSFVDRFNNDVMKANDYNKSSMALGIYSPYWRTLRRICTAELFSNKRLNETVLVRQKCVDEMLSWIEKEIEESATGEIEVKKFMFPAIFNLIGNLTLSQDLTHPNSKMASEFYTALSGFSVCLSSPNISDLFPWLRWLDLQGLRRRTDRELKKAMQIISGFVSERVKQRQHREGRATEH-KDFLDVVLDYEGNGKDEPAKLSHHQITIFLMEMFIAGTETTSATIEWAMCELLRNPESMKKIKAELGKVVGVNKGLEESDINNLPYLQAIVKESLRLHASVPLALPRKAVQDTNFMGYNIPKNTQVLVNVWAIGRDEESWEDALSFRPERFLESSTEYKGQNYQFIPFGAGRRMCPGLPLGHRVLPLILGSLLHHFDWKLCESVSGEINIDMRETVGISARKVVPLRAVPK 504

[Close]

BLAST of DCAR_026866 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A3S9H6H5 ((Cytochrome P450 CYP76AE9 {ECO:0000313|EMBL:AZP01945.1}))

HSP 1 Score: 610.527 bits (1573), Expect = 0.000e+0
Identity = 295/504 (58.53%), Postives = 377/504 (74.80%), Query Frame = 0

Query:    1 MEWNWNHVIWLALISLVSLVWHLKNRRGRSKLPPGPKGWPLIGNLLELGSLPHRRLEALKKDYGPVVWLNIGPIKTMVILSAGAAEELFKNHDINFADRFGNDSMRSHDYYMSSMAVGAYTSYWRTLRKICTVELFTNKRINETVLVRRRSVDELLVWIEKEADKGASDGIEVISFVFAALFNMVGNLTLSRDLVDPYSTISSEFCDTLSGFHQCLLHPNISDLFPWLSRFDLQGIRRRMDGYLGKAIEIISGFVKERVKERQKTQKLSSEQKKDFLDVLLDYRGTGR-DELDSLSEHQVTIFLMEMFIAGTHTSSTTTEWALSELLQNPDQMKKVKAELARVVGAKTRLQESDIDNLPYLQAIMEETLRLHPPAPILLPRKAAQDTTFMGYNIPKNTQVLVNSWAIGRDEENWKDALSFRPERFLNSNINSKGQNYELLPFGAGRRICPGIPLAHRMVPLVLGSLLHHFEWELCDGL--KKIDMTETLGATATKRELLRAIPK 501
            MEW W+  +   LI L  L+W      G SKLPPGP+GWP+IGN+ ++G+LPHR L  LK+ YGP+VWLN+G I TMV++SA AAEELFKNHD++F +R   ++ RSHDYY SSM VG++  Y R+LR+ICTVE+ +NK+INETV +R++ V +L  WIEK+ D  +  GIEV  FVF+++FNM+GN+ LSRDLVDP S +  EF   ++G  +C+  PN+SD FPWL  FDLQG+RRRMD  L K +EI S  VKER++E          Q+KDFLD+LLD+      DE   LSE Q++IFLMEMFI GT T ST+ EWA++EL QNP+ M K+KAEL RVVG   + ++ DIDNL YLQA ++ETLRLHPP P+LL RKA ++T FMGYNIPKNTQV VN+WAIGRD E W D LSF+P+RFL+SNI   GQ++E +PFGAGRRICPGI LAHR +PL+LG+LLHHF+WEL + +  K +DMTET+G TATK + L+AIPK
Sbjct:    1 MEWLWSSTLCSILIILPVLLWRWTRNSG-SKLPPGPRGWPIIGNIFDVGTLPHRSLAVLKQKYGPIVWLNLGAINTMVVVSADAAEELFKNHDLSFIERTVIETTRSHDYYKSSMGVGSFGPYVRSLRRICTVEMLSNKKINETVCIRQKCVTDLCWWIEKQVD-CSEGGIEVKKFVFSSVFNMIGNMILSRDLVDPTSEMVLEFSAAITGIMECVGCPNVSDFFPWLRWFDLQGLRRRMDRILAKLVEITSRMVKERLEEGG-----GGPQRKDFLDMLLDFEVINENDEPAKLSEFQISIFLMEMFIGGTETISTSIEWAMTELFQNPEAMIKIKAELGRVVGTNKKFEDRDIDNLHYLQATVKETLRLHPPTPLLLSRKALRNTNFMGYNIPKNTQVFVNAWAIGRDPECWDDPLSFKPQRFLDSNIGYNGQHFEFIPFGAGRRICPGIQLAHRELPLILGTLLHHFDWELPNNVTSKTVDMTETMGLTATKLKPLKAIPK 497

[Close]

BLAST of DCAR_026866 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZLU7 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8518636.1}))

HSP 1 Score: 574.318 bits (1479), Expect = 0.000e+0
Identity = 288/509 (56.58%), Postives = 379/509 (74.46%), Query Frame = 0

Query:    1 MEWNWNHVIWLALISLVSLVWHLKNRRGRS-KLPPGPKGWPLIGNLLELGSLPHRRLEALKKDYGPVVWLNIGPIKTMVILSAGAAEELFKNHDINFADRFGNDSMRSHDYYMSSMAVGAYTSYWRTLRKICTVELFTNKRINETVLVRRRSVDELLVWIEKEADKGASD-GIEVISFVFAALFNMVGNLTLSRDLVDPYSTISSEFCDTLSGFHQCLLHPNISDLFPWLSRFDLQGIRRRMDGYLGKAIEIISGFVKERVKERQKTQKLSSEQKKDFLDVLLDYRGTGRDELDSLSEHQVTIFLMEMFIAGTHTSSTTTEWALSELLQNPDQMKKVKAELARVVGAKTRLQESDIDNLPYLQAIMEETLRLHPPAPILLPRKAAQDTTFMGYNIPKNTQVLVNSWAIGRDEENWKDALSFRPERFLNSNINSKGQNYELLPFGAGRRICPGIPLAHRMVPLVLGSLLHHFEWELCDG---LKKIDMTETLGATATKRELLRAIPKLKT 504
            ME  W+ ++   +I + +L+ H + ++ RS +LPPGP GWP+ GN+L+LG++PH+ L  LK+ YGPVVWL +G + TMVIL+A AA ELFKNHD++FA+R     M+SHDY   S+A+  Y +YWR LR+ICTVE+  NKRINETV +RR+ VD++L+WI+KEA+ GA +  I +  FVF A FNM+GNL LSRDLVDP S   SEF   + G  +   HPNI+DLFPWL R D QG+R++MD  LGKA+ I SGFVKER+KERQ+      E+KKDFLDVLL++ G G+DE   LSE  + IF++E+F+AG+ T+S+T EWA++ELL NP  M KVKAELA+VVG K + +ESDIDN  YL A+++ETLRLHPP P L+PRKA Q+T F+GY+IPKNTQ+ VN+WAIGRD E W D  SF+PERFL S I+ KGQ++E++PFGAGRR+C G+PLAHRM+ L LGSLLH F+WE  DG    + +DM + +G T  K E L+ +PK  T
Sbjct:    1 MESFWSFLVCSIIILIPALLLHRRWQKSRSYRLPPGPAGWPVFGNMLDLGTMPHKTLAGLKQYYGPVVWLKLGSLNTMVILTAKAATELFKNHDLSFAERTVTYLMQSHDYNKGSLALAPYGTYWRVLRRICTVEMLVNKRINETVSIRRKCVDDMLLWIQKEANSGAKERAIHLARFVFLASFNMLGNLMLSRDLVDPDSKEGSEFFSAMMGLMEWTGHPNIADLFPWLRRLDFQGLRKKMDRDLGKALMIASGFVKERIKERQE----GGERKKDFLDVLLEFEGNGKDEPSKLSEQDINIFILEIFLAGSETTSSTIEWAMTELLCNPKSMIKVKAELAKVVGPKKKFEESDIDNAHYLLAVVKETLRLHPPIPFLVPRKAIQETNFLGYHIPKNTQLFVNAWAIGRDPECWDDPNSFKPERFLGSKIDYKGQHFEMIPFGAGRRMCAGVPLAHRMLHLGLGSLLHEFDWEF-DGHVTRETMDMKDKMGVTVRKLEPLKVVPKKHT 504

[Close]

BLAST of DCAR_026866 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8EEL7 ((LOW QUALITY PROTEIN: cytochrome P450 76A2-like {ECO:0000313|RefSeq:XP_016544841.1}))

HSP 1 Score: 573.933 bits (1478), Expect = 0.000e+0
Identity = 272/508 (53.54%), Postives = 374/508 (73.62%), Query Frame = 0

Query:    1 MEWNWNHVIWLALISLVSLVWHL---KNRRGRSKLPPGPKGWPLIGNLLELGSLPHRRLEALKKDYGPVVWLNIGP-IKTMVILSAGAAEELFKNHDINFADRFGNDSMRSHDYYMSSMAVGAYTSYWRTLRKICTVELFTNKRINETVLVRRRSVDELLVWIEKEADKG-ASDGIEVISFVFAALFNMVGNLTLSRDLVDPYSTISSEFCDTLSGFHQCLLHPNISDLFPWLSRFDLQGIRRRMDGYLGKAIEIISGFVKERVKERQKTQKLSSEQKKDFLDVLLDYRGTGRDELDSLSEHQVTIFLMEMFIAGTHTSSTTTEWALSELLQNPDQMKKVKAELARVVGAKTRLQESDIDNLPYLQAIMEETLRLHPPAPILLPRKAAQDTTFMGYNIPKNTQVLVNSWAIGRDEENWKDALSFRPERFLNSNINSKGQNYELLPFGAGRRICPGIPLAHRMVPLVLGSLLHHFEWELCDGL--KKIDMTETLGATATKRELLRAIPK 501
            MEW W+++ + A++ L + ++     K  +   KLP GP G P+ GN+ ELG+ P++++  LK+ YGPV+WL +G  I TMV+ +A AA ELFKNHD++FADR  +D   +H+YY  SMA+G Y S+WR  R+ICTVE+F +K+I+ETV +R + VD +L WIEK A+      GIEV  FVF A FNM+GNL LS+DL DP S  +SEF + + G  +     N+SD+FP+L RFDLQ +R++M   +GKA+EI S F+KER  ER+K +    E+ KDFLDVLL++ GTG+DE   LSEH++ + ++EMF+AG+ T+S+  EWAL+ELL++P+ M KVK E++RVVG   + +ESDIDNLPY+QA+++E+LRLHPP P L+PR+  QDT FMGY+IPK TQVLVN+WAIGRD E W D +SF+P+RFL S ++ KGQ+YEL+PFGAGRR+C G+PL HRM+   LGSLLH FEWEL DG+  K I+M E++G TA KR+ L+ +PK
Sbjct:    1 MEWEWSYLFFSAIMLLPAFIFFFSKKKTSKCSYKLPSGPPGLPIFGNMFELGTEPYKKMACLKQKYGPVLWLKVGSSINTMVVQTAQAAAELFKNHDVSFADRTISDVNLAHNYYQGSMALGRYGSFWRFQRRICTVEMFVHKKISETVPIRLKCVDSMLKWIEKAANSAEKGSGIEVTRFVFLASFNMLGNLILSKDLADPDSEEASEFFNAMKGIMEWSGTANVSDIFPFLRRFDLQKLRKKMVRDMGKAMEIASIFLKEREGERKKCE----EKGKDFLDVLLEFEGTGKDEPAKLSEHEIKVLIVEMFLAGSETTSSIVEWALTELLRHPEAMDKVKTEISRVVGPNRKFEESDIDNLPYMQAVIKESLRLHPPLPFLIPRETIQDTKFMGYDIPKGTQVLVNAWAIGRDPECWDDPMSFKPKRFLGSKVDVKGQHYELIPFGAGRRMCVGLPLGHRMMHFTLGSLLHEFEWELPDGVFPKSINMDESMGLTARKRDSLKVMPK 504

[Close]

BLAST of DCAR_026866 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J4ZFP2 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8516654.1}))

HSP 1 Score: 567 bits (1460), Expect = 0.000e+0
Identity = 268/511 (52.45%), Postives = 369/511 (72.21%), Query Frame = 0

Query:    1 MEWNWNHVIWLALISL-VSLVWHLKNRRGRSKLPPGPKGWPLIGNLLELGSLPHRRLEALKKDYGPVVWLNIGPIKTMVILSAGAAEELFKNHDINFADRFGNDSMRSHDYYMSSMAVGAYTSYWRTLRKICTVELFTNKRINETVLVRRRSVDELLVWIEKEADKGASD---GIEVISFVFAALFNMVGNLTLSRDLVDPYSTISSEFCDTLSGFHQCLLHPNISDLFPWLSRFDLQGIRRRMDGYLGKAIEIISGFVKERVKERQKTQKLSSEQKKDFLDVLLDYRGTGRDELDSLSEHQVTIFLMEMFIAGTHTSSTTTEWALSELLQNPDQMKKVKAELARVVGAKTRLQESDIDNLPYLQAIMEETLRLHPPAPILLPRKAAQDTTFMGYNIPKNTQVLVNSWAIGRDEENWKDALSFRPERFLNSNINSKGQNYELLPFGAGRRICPGIPLAHRMVPLVLGSLLHHFEWELCDGL--KKIDMTETLGATATKRELLRAIPKLKTI 505
            MEW W+  ++ ++I L V  ++H + +   ++LPPGP GWP+ G++ +LG++PH+ +   K+ YGP++WL +G I TMV+L+  AA ELFKNHD++F +R     ++S DY   ++++  Y SYWR LR+ICTVE+F N+RINET  VRR+ V+++L WIEKEA   A+     I V  F F A FNM+GNL LSRDLVDP S   SEF  T+        H N SDLFPWL   D QG+R++MD  +GKA++I SGFVKER+KER +      + +KDFLDV+L++ G+G+DE   LS+ ++ IF++EMF+AG+ T+S + EWAL+ELL NP  M KVK ELA+V+G   + +E DIDNL YLQA+++ETLRLHPP P+L+PRKA QDT FMGY+IPKNTQV VN+WAI RD E W+D +SF+PERFL S ++ KGQ+++L+PFGAGRR+C G+PLAHRM+ LVLGSLLH F+WEL   +  + +DM E +G    K E L+AIP+ + +
Sbjct:   53 MEWAWSFFVYFSIILLPVLFIFHHRKKSSTNRLPPGPLGWPVFGHIFDLGTMPHKTMAGFKQQYGPIIWLKLGSINTMVVLTGKAAAELFKNHDLSFMERTVPCVLQSQDYDKGALSLAPYGSYWRVLRRICTVEMFVNRRINETASVRRKCVNDMLSWIEKEAHADAAGEVRSIHVARFAFLASFNMLGNLMLSRDLVDPESKEGSEFFTTMIRLIGWTGHQNTSDLFPWLRWLDPQGLRKKMDRDMGKALKIASGFVKERLKERHQ----GGDGRKDFLDVMLEFEGSGKDEPAKLSDKEINIFILEMFLAGSETTSGSIEWALTELLCNPTTMIKVKEELAKVIGPNRKFEEDDIDNLQYLQAVVKETLRLHPPVPLLIPRKAIQDTNFMGYHIPKNTQVFVNAWAICRDPECWEDPVSFKPERFLGSKMDYKGQHFDLIPFGAGRRMCVGVPLAHRMLHLVLGSLLHEFDWELDSNVTPETMDMKERMGVIVRKLEPLKAIPRKRMV 559

[Close]

BLAST of DCAR_026866 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1S4DNU7 ((cytochrome P450 76A2-like {ECO:0000313|RefSeq:XP_016515093.1}))

HSP 1 Score: 565.844 bits (1457), Expect = 0.000e+0
Identity = 284/510 (55.69%), Postives = 377/510 (73.92%), Query Frame = 0

Query:    1 MEWNWNHVIWLALISLVSLVWHLKNRRGRS---KLPPGPKGWPLIGNLLELGSLPHRRLEALKKDYGPVVWLNIGP-IKTMVILSAGAAEELFKNHDINFADRFGNDSMRSHDYYMSSMAVGAYTSYWRTLRKICTVELFTNKRINETVLVRRRSVDELLVWIEKEAD---KGASDGIEVISFVFAALFNMVGNLTLSRDLVDPYSTISSEFCDTLSGFHQCLLHPNISDLFPWLSRFDLQGIRRRMDGYLGKAIEIISGFVKERVKERQKTQKLSSEQKKDFLDVLLDYRGTGRDELDSLSEHQVTIFLMEMFIAGTHTSSTTTEWALSELLQNPDQMKKVKAELARVVGAKTRLQESDIDNLPYLQAIMEETLRLHPPAPILLPRKAAQDTTFMGYNIPKNTQVLVNSWAIGRDEENWKDALSFRPERFLNSNINSKGQNYELLPFGAGRRICPGIPLAHRMVPLVLGSLLHHFEWELCDGL--KKIDMTETLGATATKRELLRAIPK 501
            MEW W+++ +  +I L  L+     ++  S   +LPPGP G P+ GN+ ELG+LP++++  LK+ YGPV+WL IGP I +MV+ +A AA +LFKNHDI+FADR   D  ++H+YY  SMA+G Y S+WR  R+ICTVE+F NK+INETV VRR+ V++++ WIEKEA+   KG+  GIEV  FVF A FNM+GNL  S+DL DP S  +S+F + + G  +    PN+SD+FP L RFDLQ +R++M   +GKA+E  S F+KER +ER K      ++ KDFLDVLL++ GTG+DE   LSEH++ I +MEMF+AG+ T+S++ EWAL+ELL++P+ M KVK EL++VVG   + +ESDIDNLPY+QAI++E+LRLHPP P L+PR   QDT FMGY+IPK TQVLVN WAIGRD E W D +SF+PERFL S I+ KGQNYEL+PFGAGRR+C G+PL HRM+   LGSLLH F+WEL DG+  K I+M E+LG TA KR  L+ IPK
Sbjct:    1 MEWEWSYLFFSTIIFLPVLLLIFPKKKAISSSYRLPPGPPGLPIFGNMFELGTLPYKKVAVLKQKYGPVLWLKIGPSINSMVVQTAQAAADLFKNHDISFADRCPVDVNQAHNYYQGSMALGQYGSFWRFQRRICTVEMFVNKKINETVSVRRKCVNDMVKWIEKEANVVKKGS--GIEVTRFVFLASFNMLGNLIFSKDLADPDSEEASDFFNAMKGIMEWSGIPNVSDIFPSLKRFDLQSLRKKMTRDMGKAMEFGSAFLKEREEERIKG---GEKRDKDFLDVLLEFEGTGKDEPAKLSEHEIKILVMEMFLAGSETTSSSVEWALTELLRHPEAMAKVKEELSKVVGPNKKFEESDIDNLPYMQAILKESLRLHPPLPFLIPRSTIQDTKFMGYDIPKGTQVLVNVWAIGRDPECWDDPMSFKPERFLGSKIDVKGQNYELMPFGAGRRMCVGLPLGHRMMHFALGSLLHEFDWELPDGVSPKSINMDESLGVTARKRHSLKVIPK 505


Match Name	Stats	Description
A0A1U9X5Z7	E-Value: 0.000e+0, PID: 72.31	(Cytochrome P450 {ECO:0000313\|EMBL:AQY76213.1}) (1... [more]
A0A3Q8TIX5	E-Value: 0.000e+0, PID: 70.52	(Cytochrome P450 CYP76AE4 {ECO:0000313\|EMBL:AZL400... [more]
A0A1U9X5Y8	E-Value: 0.000e+0, PID: 68.97	(Cytochrome P450 {ECO:0000313\|EMBL:AQY76212.1}) (1... [more]
A0A6L5BAI7	E-Value: 0.000e+0, PID: 68.77	(Uncharacterized protein {ECO:0000313\|EMBL:KAF1001... [more]
A0A1U9X5Y5	E-Value: 0.000e+0, PID: 66.34	(Cytochrome P450 {ECO:0000313\|EMBL:AQY76214.1}) (1... [more]
A0A3S9H6H5	E-Value: 0.000e+0, PID: 58.53	(Cytochrome P450 CYP76AE9 {ECO:0000313\|EMBL:AZP019... [more]
A0A5J4ZLU7	E-Value: 0.000e+0, PID: 56.58	(Uncharacterized protein {ECO:0000313\|EMBL:KAA8518... [more]
A0A1U8EEL7	E-Value: 0.000e+0, PID: 53.54	(LOW QUALITY PROTEIN: cytochrome P450 76A2-like {E... [more]
A0A5J4ZFP2	E-Value: 0.000e+0, PID: 52.45	(Uncharacterized protein {ECO:0000313\|EMBL:KAA8516... [more]
A0A1S4DNU7	E-Value: 0.000e+0, PID: 55.69	(cytochrome P450 76A2-like {ECO:0000313\|RefSeq:XP_... [more]

Pages

Analysis:


Name	Description
Carrot Genome Assembly DCARv2	An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below. These sequences can be viewed in JBrowse here. Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR	This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction	For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here.