Resource Type:
Polypeptide
Name:
DCAR_026657
Identifier:
DCAR_026657.mRNA-protein
Sequence:
MDGAAASGGAGPAPFLLKTYDMVEDRSTDEIVSWSSSRNSFVVWNPPEFA
RLLLPTYFKHNNFSSFIRQLNTYMPLIFTTYLFRFPLTDAWNWFMHRPLT
GLFDPERAAFEEEIDKISREKTTLETNLLRIKQQQPTAKLQLEELTQRIG
GMEKRQENLLAFLEKVVQNPEFVEHLARKLESIDLSAYNKKRRLPHVEDS
QVLREDSFVDNHSFSRPEFGNIFHQDFSNKLTLELSPAVSDINLVSHSTQ
SSSEGGESPQRVSEGGIKDALMRSVSTVYAPETLELSDTGTSFTFNMDPS
LAQKVGLAGSNSPKLQSLQQCLSSSEEGEGHISCQLNLTLASSSLHANES
HYSAKLAQDSEKSLVSRSIGSGNEVEFRVPQKSKNYSSDGANLSSLHDTA
TKNQEPETAPPRVNDVFWEQFLTERPGTSETEQASPSARPNLHDEQEGRR
QGNQNSRSTVDSLTL*
Sequence Length:
466
Sequence Checksum:
ffe37354fa887ba9011b96f2a6c22382
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_026657, derives from mRNA, DCAR_026657. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_026657 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_026657 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AL01 ((Putative heat stress transcription factor A-5 {ECO:0000313|EMBL:MPA56775.1}))
HSP 1 Score: 533.872 bits (1374), Expect = 0.000e+0
Identity = 295/494 (59.72%), Postives = 347/494 (70.24%), Query Frame = 0
Match: A0A5B7AL01 ((Putative heat stress transcription factor A-5 {ECO:0000313|EMBL:MPA56775.1}))
HSP 1 Score: 533.872 bits (1374), Expect = 0.000e+0
Identity = 295/494 (59.72%), Postives = 347/494 (70.24%), Query Frame = 0
Query: 1 MDGAAASGGAGPAPFLLKTYDMVEDRSTDEIVSWSSSRNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYMPLIFTTYLFRFPLTDAWNW----FM----------HR---------PLTGLFDPERAAFEEEIDKISREKTTLETNLLRIKQQQPTAKLQLEELTQRIGGMEKRQENLLAFLEKVVQNPEFVEHLARKLESIDLSAYNKKRRLPHVEDSQVLREDSFVDNHSFSRPEFGNIFHQDFSNKLTLELSPAVSDINLVSHSTQSSSEGGESPQRV-SEGGIKDALMRSVSTVYAPETLELSDTGTSFTFNMDPSLAQKVGLAGSNSPKLQSLQQCLSSSEEGEGHISCQLNLTLASSSLHANESHYSAK---LAQDSEKSLVSRSIGSGNEVEFRVPQKSKNYSSDGANLSSLHDTATKNQEPETAPPRVNDVFWEQFLTERPGTSETEQASPSARPNLHDEQEGRR--QGNQNSRSTVDSLTL 465
MDGA ++GG GPAPFLLKTYDMV+D STD+IVSWSS++NSFVVWNPPEFAR+LLPTYFKHNNFSSFIRQLNTY FR + W + FM HR P DPERAAFEEEIDK+SREK LE N+LR KQQQ AKLQLE+L QR GGME++QE LL F EK +QN FVEHL++KLES+D SAYNKKRRLP VE SQ + E+ FVDNH+ SRP+FGN FHQD SNKL LELSPAVSD+NLVS+STQSS+E G SPQR+ SEG D MR+ ++APETLELSDTGTSFT MD SL+ + G S SP+L SLQQ L+S+EEG+G ISC LNLTLASS L +SHYSA+ L Q+ KS +S + + +F V K++ +S D LSS + NQ P TA RVNDVFWEQFLTERPGTSE E+AS + R +DEQE R +G + V+ LTL
Sbjct: 1 MDGAPSAGG-GPAPFLLKTYDMVDDSSTDDIVSWSSNKNSFVVWNPPEFARILLPTYFKHNNFSSFIRQLNTYG--------FRKIDPERWEFANEEFMKDQKHLLINIHRRKPIHSHSHPQGSSVDPERAAFEEEIDKLSREKAALEENVLRFKQQQSAAKLQLEDLNQRAGGMEQKQEKLLTFFEKAIQNRSFVEHLSQKLESMDFSAYNKKRRLPQVEHSQAVPENGFVDNHNSSRPDFGNFFHQDISNKLRLELSPAVSDVNLVSYSTQSSNEDGGSPQRILSEGYQNDTQMRTGGFLFAPETLELSDTGTSFTLKMDSSLSSRAG--ASESPRLHSLQQSLTSNEEGDG-ISCHLNLTLASSPLQVEKSHYSARMPQLGQEIGKSSELKSNANIKDADFIVSPKNRTFSDDDTTLSSSQEAPINNQGPATAQVRVNDVFWEQFLTERPGTSENEEASSNLRSTPYDEQEDSRSSRGMSGNTKNVEHLTL 482
BLAST of DCAR_026657 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5ACN4 (HSF_DOMAIN domain-containing protein {ECO:0000259|PROSITE:PS00434})
HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0
Identity = 299/497 (60.16%), Postives = 347/497 (69.82%), Query Frame = 0
Match: A0A5J5ACN4 (HSF_DOMAIN domain-containing protein {ECO:0000259|PROSITE:PS00434})
HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0
Identity = 299/497 (60.16%), Postives = 347/497 (69.82%), Query Frame = 0
Query: 1 MDG-AAASGG--AGPAPFLLKTYDMVEDRSTDEIVSWSSSRNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYMPLIFTTYLFRFPLTDAWNWF--------------MHR---------PLTGLFDPERAAFEEEIDKISREKTTLETNLLRIKQQQPTAKLQLEELTQRIGGMEKRQENLLAFLEKVVQNPEFVEHLARKLESIDLSAYNKKRRLPHVEDSQVLREDSFVDNHSFSRPEFGNIFHQDFSNKLTLELSPAVSDINLVSHSTQSSSEGGESPQ-RVSEGGIKDALMRSVSTVYAPETLELSDTGTSFTFNMDPSLAQKVGLAGSNSPKLQSLQQCLSSSEEGEGHISCQLNLTLASSSLHANESHYSA---KLAQDSEKSLVSRSIGSGNEVEFRVPQKSKNYSSDGANLSSLHDTATKNQEPETAPPRVNDVFWEQFLTERPGTSETEQASPSARPNLHDEQEGRRQGNQNSRS--TVDSLTL 465
MDG + A GG GPAPFLLKTYDM+ED STD+IVSWSSS+NSFVVWNPPEFAR+LLPTYFKHNNFSSFIRQLNTY FR + W + +HR P DPERAAF+EEI+K+SREK LE N+L KQQQ AKLQLE+LTQR+GGME+RQE LL+FLEK +QN FVEHLARKLES+D SAYNKKRRLP V+ SQ + E+ FVDNHS RPEFGNIFHQDFSNKL LELSPAVSD+ LVSHST SS+E G SP R+ EG KDA MR V+APETLELSDTGTSF F MD SL+ + G + SP+L SLQQ L+S+EEG+G ISC LNLTLASS L N HYSA +L Q+ KS +S + E +F V K++ +S D LSS + NQ P TA RVNDVFWEQFLTERPG+S+ E+AS + R N D QE RR G+ SR+ V+ LTL
Sbjct: 1 MDGPSVAVGGVSGGPAPFLLKTYDMIEDSSTDKIVSWSSSKNSFVVWNPPEFARVLLPTYFKHNNFSSFIRQLNTYG--------FRKIDPERWEFANEDFVKDQKHLLKNIHRRKPIHSHSHPQGSSADPERAAFDEEIEKLSREKAALEANVLSFKQQQSAAKLQLEDLTQRVGGMEQRQEKLLSFLEKAIQNRSFVEHLARKLESMDFSAYNKKRRLPQVDHSQPVPENGFVDNHSSFRPEFGNIFHQDFSNKLRLELSPAVSDVILVSHSTLSSNEDGGSPHMRIKEGYTKDAHMRISGLVFAPETLELSDTGTSFRFKMDSSLSCRAG--ANESPRLHSLQQSLTSNEEGDG-ISCHLNLTLASSPLQVNRGHYSAGMSQLGQEIGKSPEPKSNANIKEADFIVSPKNRTFSDDDTTLSSSQEAPINNQGPATAQGRVNDVFWEQFLTERPGSSDNEEASSNFRENPSDGQEDRRSGHGMSRNRKNVEHLTL 486
BLAST of DCAR_026657 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BYU4 (HSF_DOMAIN domain-containing protein {ECO:0000259|PROSITE:PS00434})
HSP 1 Score: 515.383 bits (1326), Expect = 1.786e-178
Identity = 282/469 (60.13%), Postives = 339/469 (72.28%), Query Frame = 0
Match: A0A5J5BYU4 (HSF_DOMAIN domain-containing protein {ECO:0000259|PROSITE:PS00434})
HSP 1 Score: 515.383 bits (1326), Expect = 1.786e-178
Identity = 282/469 (60.13%), Postives = 339/469 (72.28%), Query Frame = 0
Query: 1 MDGAAASGGAGPAPFLLKTYDMVEDRSTDEIVSWSSSRNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYMPLIFTTYLFRFP----LTDAWNWF--MHR---------PLTGLFDPERAAFEEEIDKISREKTTLETNLLRIKQQQPTAKLQLEELTQRIGGMEKRQENLLAFLEKVVQNPEFVEHLARKLESIDLSAYNKKRRLPHVEDSQVLREDSFVDNHSFSRPEFGNIFHQDFSNKLTLELSPAVSDINLVSHSTQSSSEGGESPQR-VSEGGIKDALMRSVSTVYAPETLELSDTGTSFTFNMDPSLAQKVGLAGSNSPKLQSLQQCLSSSEEGEGHISCQLNLTLASSSLHANESHYSAK---LAQDSEKSLVSRSIGSGNEVEFRVPQKSKNYSSDGANLSSLHDTATKNQEPETAPPRVNDVFWEQFLTERPGTSETEQASPSARPNLHDEQEGRR 450
MDGA+++GG GPAPFLLKTY+MV+D STD+IVSWS + +SFVVWNPPEFAR+LLPTYFKHNNFSSFIRQLNTY + F L D + +HR P DPERAAF+EEIDK+SREK LE N++R KQQQ AKLQLE+LTQR GG+E++Q+ LL F EK +QN FVEHLA+KLES+D SAYNKKRRLP V+ SQ + E+SFVD+ S SR +FGNIFHQD SN+LTLELSPAVSD+N VS STQSS E G SPQR +SEG DA M + V+APETLELSDTGTSFT MDP L+ + G S +P+LQSLQQ L+S+EEG+G ISC LNLTLASS L ++SHYSA+ L Q+ KS +S + + +F V K++ +S D LSS KNQ P TA RVNDVFWEQFLTERPG+SE E+AS + + N + EQE RR
Sbjct: 27 MDGASSAGG-GPAPFLLKTYEMVDDSSTDDIVSWSDNNSSFVVWNPPEFARVLLPTYFKHNNFSSFIRQLNTYGFRKIDPERWEFANEEFLKDQKHLLTNIHRRKPIHSHSHPQGSSVDPERAAFDEEIDKLSREKAALEANVIRFKQQQSAAKLQLEDLTQRTGGLEQKQQKLLTFFEKAIQNRSFVEHLAQKLESMDFSAYNKKRRLPQVDHSQPVPENSFVDDRSSSRHDFGNIFHQDISNELTLELSPAVSDVNFVSQSTQSSIEDGGSPQRKLSEGYQNDARMGTGGFVFAPETLELSDTGTSFTLKMDPLLSCRPG--ASENPRLQSLQQSLTSNEEGDG-ISCHLNLTLASSPLQVDKSHYSARMPQLGQEIGKSPDLKSNANIKDADFIVSPKNRTFSDDNTTLSSSQGAPIKNQGPATAQVRVNDVFWEQFLTERPGSSENEEASSNFKANPYSEQEDRR 491
BLAST of DCAR_026657 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RS00 ((Heat stress transcription factor A-5 like {ECO:0000313|EMBL:PSS32793.1}))
HSP 1 Score: 500.745 bits (1288), Expect = 4.238e-173
Identity = 296/483 (61.28%), Postives = 340/483 (70.39%), Query Frame = 0
Match: A0A2R6RS00 ((Heat stress transcription factor A-5 like {ECO:0000313|EMBL:PSS32793.1}))
HSP 1 Score: 500.745 bits (1288), Expect = 4.238e-173
Identity = 296/483 (61.28%), Postives = 340/483 (70.39%), Query Frame = 0
Query: 1 MDGAAASGGAGPAPFLLKTYDMVEDRSTDEIVSWSSSRNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYMPLIFTTYLFRFP----LTDAWNWF--MHR---------PLTGLFDPERAAFEEEIDKISREKTTLETNLLRIKQQQPTAKLQLEELTQRIGGMEKRQENLLAFLEKVVQNPEFVEHLARKLESIDLSAYNKKRRLPHVEDSQVLREDSFVDNHSFSRPEFGNIFHQDFSNKLTLELSPAVSDINLVSHSTQSSSEGGESPQR-VSEGGIKDALMRSVSTVYAPETLELSDTGTSFTFNMDPSLAQKVGLAGSNSPKLQSLQQCLSSSEEGEGHISCQLNLTLASSSLHANESHYSAKLAQDSEKSLVSRSIGSGNEVEFRVPQKSKNYSSDGANLSSLHDTATKNQEPETAPPRVNDVFWEQFLTERPGTSETEQASPSARPNLHDEQEGRRQGNQNSRS--TVDSLTL 465
MDG A GG GPAPFLLKTYDMV+D STDEIVSWSSS+NSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY + F L D + +HR P DPERAAFEEEIDK+SREKTTLE NLLR KQQ AK QLE+ TQR+ ME+RQE+LL+FLEK VQN FVE L+RKLES+D SAYNKKRRLP V+ S + E+SFVDN S SRP+FG FHQDFS+KL LELSPA SDIN VSHSTQSS+E G SPQR + EG KDA R+ +APETLELSDTGTSFTFNMD +L K G GS SP+LQSLQQ L+S+EE +GHISCQLNLTLASSSL ++S YSAK+ IG +E+ + + D LSS + K QEP T RVNDVFWEQFLTERPGTS+ E+AS S R N +D+Q+ R+ G SR+ ++ LTL
Sbjct: 1 MDGTPAGGGGGPAPFLLKTYDMVDDSSTDEIVSWSSSKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPERWEFANEEFLKDQKHLLKNIHRRKPIHSHSQPQGSAADPERAAFEEEIDKLSREKTTLENNLLRFKQQS-AAKPQLEDWTQRVTAMEQRQESLLSFLEKAVQNQNFVEQLSRKLESMDFSAYNKKRRLPQVDYSPQVPENSFVDNQSSSRPDFGIFFHQDFSDKLRLELSPADSDINFVSHSTQSSNEDGGSPQRRLLEGYPKDA-QRAGGLSFAPETLELSDTGTSFTFNMDSALLHKAG--GSESPRLQSLQQNLTSNEEVDGHISCQLNLTLASSSLQVDKSQYSAKVPPQQ-----GHDIGKSSELR----SNANDTEDDDGTLSSSQEAPVKKQEPATPQVRVNDVFWEQFLTERPGTSDAEEASSSFRANAYDDQDDRQSGRAVSRNGKNMEHLTL 470
BLAST of DCAR_026657 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4F280 (HSF_DOMAIN domain-containing protein {ECO:0000259|PROSITE:PS00434})
HSP 1 Score: 498.819 bits (1283), Expect = 3.813e-172
Identity = 280/472 (59.32%), Postives = 329/472 (69.70%), Query Frame = 0
Match: A0A4S4F280 (HSF_DOMAIN domain-containing protein {ECO:0000259|PROSITE:PS00434})
HSP 1 Score: 498.819 bits (1283), Expect = 3.813e-172
Identity = 280/472 (59.32%), Postives = 329/472 (69.70%), Query Frame = 0
Query: 5 AASGGAGPAPFLLKTYDMVEDRSTDEIVSWSSSRNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYMPLIFTTYLFRFPLTDAWNWF--------------MHR---------PLTGLFDPERAAFEEEIDKISREKTTLETNLLRIKQQQPTAKLQLEELTQRIGGMEKRQENLLAFLEKVVQNPEFVEHLARKLESIDLSAYNKKRRLPHVEDSQVLREDSFVDNHSFSRPEFGNIFHQDFSNKLTLELSPAVSDINLVSHSTQSSSEGGESPQ-RVSEGGIKDALMRSVSTVYAPETLELSDTGTSFTFNMDPSLAQKVGLAGSNSPKLQSLQQCLSSSEEGEGHISCQLNLTLASSSLHANESHYSAK--LAQDSEKSLVSRSIGSGNEVEFRVPQKSKNYSSDGANLSSLHDTATKNQEPETAPP-RVNDVFWEQFLTERPGTSETEQASPSARPNLHDEQEGR 449
ASGG GPAPFLLKTYDMV+D +TDEIVSWSS+ NSFVVWNPPEFAR+LLPTYFKHNNFSSFIRQLNTY FR + W + +HR P D ERAAFEEEIDK+SREK LE AKLQLE+ TQR+ GME+RQ+ LL +LE +QN FVEHLARKLE++D SAYNKKRRLP V+ SQ + E+SFVDNHS SRPEFG++FHQDFSNKL LELSP+VSDINLVSHSTQSS+E G SPQ R+SEG KDA MR+ +AP+TLELSDTGTSF F MD +L++K GS SP+LQSLQQ L+S+EEG+GHISC LNLTLASS + S SA+ L + KS RS +G +FRV ++ +S D A LSS + K Q P PP RVND+FWEQFLTERPG S+TE+AS S R N +D+Q+ R
Sbjct: 3 VASGG-GPAPFLLKTYDMVDDSNTDEIVSWSSNNNSFVVWNPPEFARVLLPTYFKHNNFSSFIRQLNTYG--------FRKIDPERWEFANEDFVKDQKHLLKNIHRRKPIHSHSHPHGTPVDQERAAFEEEIDKLSREKVALEKAACEKAALLSAAKLQLEDSTQRVNGMEQRQDKLLNYLETAIQNQNFVEHLARKLEAMDFSAYNKKRRLPQVDYSQPVPENSFVDNHSSSRPEFGHVFHQDFSNKLRLELSPSVSDINLVSHSTQSSNEDGGSPQRRLSEGYPKDAQMRAGGLPFAPKTLELSDTGTSFMFMMDSTLSRK---GGSGSPRLQSLQQNLTSNEEGDGHISCHLNLTLASSLSQVDNSQSSARIQLGHEIGKSPELRSNVNGKVTDFRVSPSNRAFSDDDATLSSSQEAPIKIQGPPAPPPARVNDMFWEQFLTERPGASDTEEASSSFRANPYDDQKDR 462
BLAST of DCAR_026657 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7GNA9 (HSF_DOMAIN domain-containing protein {ECO:0000259|PROSITE:PS00434})
HSP 1 Score: 498.819 bits (1283), Expect = 3.813e-172
Identity = 280/472 (59.32%), Postives = 329/472 (69.70%), Query Frame = 0
Match: A0A7J7GNA9 (HSF_DOMAIN domain-containing protein {ECO:0000259|PROSITE:PS00434})
HSP 1 Score: 498.819 bits (1283), Expect = 3.813e-172
Identity = 280/472 (59.32%), Postives = 329/472 (69.70%), Query Frame = 0
Query: 5 AASGGAGPAPFLLKTYDMVEDRSTDEIVSWSSSRNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYMPLIFTTYLFRFPLTDAWNWF--------------MHR---------PLTGLFDPERAAFEEEIDKISREKTTLETNLLRIKQQQPTAKLQLEELTQRIGGMEKRQENLLAFLEKVVQNPEFVEHLARKLESIDLSAYNKKRRLPHVEDSQVLREDSFVDNHSFSRPEFGNIFHQDFSNKLTLELSPAVSDINLVSHSTQSSSEGGESPQ-RVSEGGIKDALMRSVSTVYAPETLELSDTGTSFTFNMDPSLAQKVGLAGSNSPKLQSLQQCLSSSEEGEGHISCQLNLTLASSSLHANESHYSAK--LAQDSEKSLVSRSIGSGNEVEFRVPQKSKNYSSDGANLSSLHDTATKNQEPETAPP-RVNDVFWEQFLTERPGTSETEQASPSARPNLHDEQEGR 449
ASGG GPAPFLLKTYDMV+D +TDEIVSWSS+ NSFVVWNPPEFAR+LLPTYFKHNNFSSFIRQLNTY FR + W + +HR P D ERAAFEEEIDK+SREK LE AKLQLE+ TQR+ GME+RQ+ LL +LE +QN FVEHLARKLE++D SAYNKKRRLP V+ SQ + E+SFVDNHS SRPEFG++FHQDFSNKL LELSP+VSDINLVSHSTQSS+E G SPQ R+SEG KDA MR+ +AP+TLELSDTGTSF F MD +L++K GS SP+LQSLQQ L+S+EEG+GHISC LNLTLASS + S SA+ L + KS RS +G +FRV ++ +S D A LSS + K Q P PP RVND+FWEQFLTERPG S+TE+AS S R N +D+Q+ R
Sbjct: 3 VASGG-GPAPFLLKTYDMVDDSNTDEIVSWSSNNNSFVVWNPPEFARVLLPTYFKHNNFSSFIRQLNTYG--------FRKIDPERWEFANEDFVKDQKHLLKNIHRRKPIHSHSHPHGTPVDQERAAFEEEIDKLSREKVALEKAACEKAALLSAAKLQLEDSTQRVNGMEQRQDKLLNYLETAIQNQNFVEHLARKLEAMDFSAYNKKRRLPQVDYSQPVPENSFVDNHSSSRPEFGHVFHQDFSNKLRLELSPSVSDINLVSHSTQSSNEDGGSPQRRLSEGYPKDAQMRAGGLPFAPKTLELSDTGTSFMFMMDSTLSRK---GGSGSPRLQSLQQNLTSNEEGDGHISCHLNLTLASSLSQVDNSQSSARIQLGHEIGKSPELRSNVNGKVTDFRVSPSNRAFSDDDATLSSSQEAPIKIQGPPAPPPARVNDMFWEQFLTERPGASDTEEASSSFRANPYDDQKDR 462
BLAST of DCAR_026657 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0U3TZ73 ((Transcription factor HsfA5a {ECO:0000313|EMBL:ALV82481.1}))
HSP 1 Score: 497.664 bits (1280), Expect = 1.242e-171
Identity = 271/481 (56.34%), Postives = 343/481 (71.31%), Query Frame = 0
Match: A0A0U3TZ73 ((Transcription factor HsfA5a {ECO:0000313|EMBL:ALV82481.1}))
HSP 1 Score: 497.664 bits (1280), Expect = 1.242e-171
Identity = 271/481 (56.34%), Postives = 343/481 (71.31%), Query Frame = 0
Query: 14 PFLLKTYDMVEDRSTDEIVSWSSSRNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYMPLIFTTYLFRFPLTDAWNWF--------------MHR---------PLTGLFDPERAAFEEEIDKISREKTTLETNLLRIKQQQPTAKLQLEELTQRIGGMEKRQENLLAFLEKVVQNPEFVEHLARKLESIDLSAYNKKRRLPHVEDSQVLREDSFVDNHSFSRPEFGNIFHQDFSNKLTLELSPAVSDINLVSHSTQSSSEGGESPQ-RVSEGGIKDALMRSVSTVYAPETLELSDTGTSFTFNMDPSLAQKVGLAGSNSPKLQSLQQCLSSSEEGEGHISCQLNLTLASSSLHANESHYS--AKLAQDSEKSLVSRSIGSGNEVEFRVPQKSKNYSSDGANLSSLHDTATKNQEPETAPPRVNDVFWEQFLTERPGTSETEQASPSARPNLHDEQEGRRQGNQ---NSRSTVDSLTL 465
PFLLKTY+MV+D STDEIVSWSS+++SFVVWNPPEFAR+LLP YFKHNNFSSFIRQLNTY FR + W + +HR P D ERAAF+EEI+++SREKT L+ + ++KQQQ +AKLQLE+LTQR+ GME+RQE LL FLEK VQNP FV+HLA+K+ES+D +AYNKKRRLP V+ Q + E+S +DN+S SRPE G+IFH+DFSNKL LELSPA SDINL+S STQS +E SP ++SEG K+ MR+ ++APETLELSDTGTSFTF DP+L+Q++G+ + S +L LQ+ L+S+EEG+GHISC LNLTLASS L ++S + ++ QD KS SRSI E +FR KS+N+++D LSS + N+ P TAP RVNDVFWEQFLTERPG+S+TE+AS + R N +DEQE RR G NS+S ++ LTL
Sbjct: 20 PFLLKTYEMVDDSSTDEIVSWSSTKSSFVVWNPPEFARVLLPMYFKHNNFSSFIRQLNTYG--------FRKSDPERWEFANEDFVKDQKHLLKNIHRRKPIHSHSHPQGPPADSERAAFDEEIERLSREKTELQLKVYKVKQQQ-SAKLQLEDLTQRVSGMEQRQEKLLTFLEKAVQNPTFVKHLAQKIESMDFAAYNKKRRLPQVDHLQPVAENSLLDNYSSSRPECGSIFHKDFSNKLKLELSPAASDINLLSQSTQSPNEDAGSPHMKISEGDPKEMPMRTEGHLFAPETLELSDTGTSFTFKRDPTLSQQMGV--NESQRLLCLQESLTSTEEGDGHISCHLNLTLASSPLQVDKSSSTRMPQIGQDIGKSSASRSIADAKEADFRAIHKSRNFANDDTILSSSQGASVANEAPPTAPVRVNDVFWEQFLTERPGSSDTEEASSNFRSNPYDEQEDRRAGQGMLVNSKS-MEHLTL 488
BLAST of DCAR_026657 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5C7ITP0 (HSF_DOMAIN domain-containing protein {ECO:0000259|PROSITE:PS00434})
HSP 1 Score: 496.508 bits (1277), Expect = 3.920e-171
Identity = 270/483 (55.90%), Postives = 336/483 (69.57%), Query Frame = 0
Match: A0A5C7ITP0 (HSF_DOMAIN domain-containing protein {ECO:0000259|PROSITE:PS00434})
HSP 1 Score: 496.508 bits (1277), Expect = 3.920e-171
Identity = 270/483 (55.90%), Postives = 336/483 (69.57%), Query Frame = 0
Query: 12 PAPFLLKTYDMVEDRSTDEIVSWSSSRNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYMPLIFTTYLFRFPLTDAWNWF--------------MHR---------PLTGLFDPERAAFEEEIDKISREKTTLETNLLRIKQQQPTAKLQLEELTQRIGGMEKRQENLLAFLEKVVQNPEFVEHLARKLESIDLSAYNKKRRLPHVEDSQVLREDSFVDNHSFSRPEFGNIFHQDFSNKLTLELSPAVSDINLVSHSTQSSSEGGESPQR-VSEGGIKDALMRSVSTVYAPETLELSDTGTSFTFNMDPSLAQKVGLAGSNSPKLQSLQQCLSSSEEGEGHISCQLNLTLASSSLHANESHYSAKLAQDSEKSLVSRSI---GSGNEVEFRVPQKSKNYSSDGANLSSLHDTATKNQEPETAPPRVNDVFWEQFLTERPGTSETEQASPSARPNLHDEQEGRRQGNQNSRS--TVDSLTL 465
PAPFLLKTYDMV+D +TDEIVSWSS++NSFVVWNPPEFAR+LLPTYFKHNNFSSFIRQLNTY FR + W + +HR P L D ERAAFEE+ID++SREK LE N+L +KQQ+ AKL LE++TQR+ ME+RQENLL FLEK +QNP FVEHLARK+ES+D SAYNKKRRLP V+ S+ + E S DN+S SR +FGNIFHQDFSNKL LELSPAVSDIN+VSHSTQSS+E G SP R +S G KDA R+ ++ PET +L+DTGTSFTF MD S KV ++SP + SLQQ L+S+EE +G++SC LNLTLASSSL ++ S+ + Q + ++ +R + + + R KSKN ++ A LSS + N EP AP RVNDVFWEQFLTERPG+S+ E+AS S R N ++EQE RR G+ R+ +++ LTL
Sbjct: 19 PAPFLLKTYDMVDDSTTDEIVSWSSNKNSFVVWNPPEFARVLLPTYFKHNNFSSFIRQLNTYG--------FRKIDPEKWEFSNEEFVKDQKHLLKNIHRRKPIHSHSHPQGSLVDTERAAFEEQIDRLSREKAALEANILGVKQQRSAAKLHLEDMTQRVDSMEQRQENLLNFLEKFIQNPSFVEHLARKIESMDFSAYNKKRRLPQVDHSRTVLESSHFDNNSSSRLDFGNIFHQDFSNKLRLELSPAVSDINVVSHSTQSSNEDGGSPLRKISNGDRKDAHTRTEGNLFVPETFDLADTGTSFTFKMDSSFPHKV--PTNDSPSVHSLQQRLTSNEEVDGNVSCHLNLTLASSSLQFSKGISSSSMPQPNHDTVKARELRYKSDDKDCDTRSFPKSKNLENESATLSSSQEAPNNNSEPSAAPVRVNDVFWEQFLTERPGSSDNEEASSSYRANPYEEQEDRRAGHGMPRNAKSMEQLTL 491
BLAST of DCAR_026657 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4U5QQ34 ((Heat Stress Transcription Factor family protein {ECO:0000313|EMBL:TKS12948.1}))
HSP 1 Score: 488.804 bits (1257), Expect = 3.424e-168
Identity = 270/467 (57.82%), Postives = 334/467 (71.52%), Query Frame = 0
Match: A0A4U5QQ34 ((Heat Stress Transcription Factor family protein {ECO:0000313|EMBL:TKS12948.1}))
HSP 1 Score: 488.804 bits (1257), Expect = 3.424e-168
Identity = 270/467 (57.82%), Postives = 334/467 (71.52%), Query Frame = 0
Query: 5 AASGGAGPAPFLLKTYDMVEDRSTDEIVSWSSSRNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYMPLIFTTYLFRFP----LTDAWNWF--MHR---------PLTGLFDPERAAFEEEIDKISREKTTLETNLLRIKQQQPTAKLQLEELTQRIGGMEKRQENLLAFLEKVVQNPEFVEHLARKLESIDLSAYNKKRRLPHVEDSQVLREDSFVDNHSFSRPEFGNIFHQDFSNKLTLELSPAVSDINLVSHSTQSSSEGGESPQR-VSEGGIKDALMRSVSTVYAPETLELSDTGTSFTFNMDPSLAQKVGLAGSNSPKLQSLQQCLSSSEEGEGHISCQLNLTLASSSLHANESHYSAK---LAQDSEKSLVSRSIGSGNEVEFRVPQKSKNYSSDGANLSSLHDTATKNQEPETAPPRVNDVFWEQFLTERPGTSETEQASPSARPNLHDEQEGRRQG 452
+A+ G GPAPFL+KTYDMV+D STDEIVSWSS++NSFVVWNPPEFARLLLPT+FKHNNFSSFIRQLNTY + F L D + +HR P L DPERAA+EEEIDK+SR+K LE ++L QQ+ +AKL +E+LTQRI M++RQE LL+FLEK VQNP FVEHLA K+ES+D SAY+KKRRLP V+ S E+SFV+NH SRPE N+ HQDFSNKL LELSPAVSDINL+S STQSS+E G SPQR +SEG KD R+ + APETLELSDTGTS+TF ++P++ + + +GS + SLQ L+S+EE +G ISCQLNLTLASS+L N++ Y A+ L Q+ KS SR S + + RV Q + N ++G LSS +T T NQ P +AP RVND FWEQFLTERPG+SE E+AS + + N +DEQ+ RR G
Sbjct: 8 SAAAGGGPAPFLIKTYDMVDDSSTDEIVSWSSNKNSFVVWNPPEFARLLLPTFFKHNNFSSFIRQLNTYGFRKIDPEKWEFANEDFLKDQKHLLKNIHRRKPIHSHSNPQGSLVDPERAAYEEEIDKLSRDKAKLEASILGFSQQRSSAKLHVEDLTQRIDTMQQRQEKLLSFLEKAVQNPAFVEHLACKIESMDFSAYSKKRRLPQVDHSMPTAENSFVENHCSSRPE-SNVIHQDFSNKLRLELSPAVSDINLISRSTQSSNEDGGSPQRKISEGNPKDGPTRTSGLLLAPETLELSDTGTSYTFKVNPAVPRDLPASGSQA--QHSLQANLTSNEEVDGLISCQLNLTLASSALQVNQNPYLARMPPLRQEIVKSPESRFNESNKDSDMRVIQ-NMNLGNEGTTLSSSQETPTNNQVPASAPARVNDGFWEQFLTERPGSSENEEASSNYQANSYDEQDERRLG 470
BLAST of DCAR_026657 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RXQ3 ((Heat stress transcription factor A-5 like {ECO:0000313|EMBL:PSS34814.1}))
HSP 1 Score: 487.263 bits (1253), Expect = 7.983e-168
Identity = 280/477 (58.70%), Postives = 329/477 (68.97%), Query Frame = 0
Match: A0A2R6RXQ3 ((Heat stress transcription factor A-5 like {ECO:0000313|EMBL:PSS34814.1}))
HSP 1 Score: 487.263 bits (1253), Expect = 7.983e-168
Identity = 280/477 (58.70%), Postives = 329/477 (68.97%), Query Frame = 0
Query: 15 FLLKTYDMVEDRSTDEIVSWSSSRNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYMPLIFTTYLFRFPLTDAWNWF--------------MHR---------PLTGLFDPERAAFEEEIDKISREKTTLETNLLRIKQQQPTAKLQLEELTQRIGGMEKRQENLLAFLEKVVQNPEFVEHLARKLESIDLSAYNKKRRLPHVEDSQVLREDSFVDNHSFSRPEFGNIFHQDFSNKLTLELSPAVSDINLVSHSTQSSSEGGESPQR-VSEGGIKDALMRSVSTVYAPETLELSDTGTSFTFNMDPSLAQKVGLAGSNSPKLQSLQQCLSSSEEGEGHISCQLNLTLASSSLHANESHYSAKLAQDSEKSLVSRSIGSGNEVEFRVPQKSKNYSSDGANLSSLHDTATKNQEPETAPPRVNDVFWEQFLTERPGTSETEQASPSARPNLHDEQEGRRQGNQNSRS--TVDSLTL 465
FLLKTY+MV+D STDEIVSWSSS+NSFVVWNPPEFAR+LLP YFKHNNFSSFIRQLNTY FR + W + +HR P DPERAAFEEEIDK+SREKTTLE NLLR KQQ AK QLE+ TQR+ +E RQE+LL+FLEKVVQN FVE L+RKLES+D SAYNKKRRL V+ SQ + E+SFVDN SRP+FGNIF QDFSNKL LELSP+VSDIN VSHSTQSS+E G SPQR +SEG KDA R+ +A ETLELSDTGTSFTFNMD +L+ K G GS +P+L LQQ L+S+EE +GH+SC LNLTLASSSL ++S YSAK+ Q S + +S + S + + D LSS + KNQ P T+ RVNDVFWEQFLTERPG S+ E+AS S R N +D+QE R+ G SR+ + LTL
Sbjct: 14 FLLKTYEMVDDSSTDEIVSWSSSKNSFVVWNPPEFARILLPAYFKHNNFSSFIRQLNTYG--------FRKIDPERWEFANEEFVKDQKHLLKNIHRRKPIHSHSQPQGSAADPERAAFEEEIDKLSREKTTLENNLLRFKQQS-AAKPQLEDWTQRVTAIELRQESLLSFLEKVVQNQNFVEQLSRKLESMDFSAYNKKRRLSQVDYSQQVPENSFVDNQWSSRPDFGNIFPQDFSNKLRLELSPSVSDINFVSHSTQSSNENGGSPQRRLSEGYPKDA-QRAGGLSFASETLELSDTGTSFTFNMDSALSHKAG--GSENPRLLPLQQNLTSNEEVDGHLSCHLNLTLASSSLQVDKSQYSAKVPQQSHEIGISPELRSN----------ANDKEDDDGTLSSSQEAPVKNQGPATSQIRVNDVFWEQFLTERPGISDAEEASSSFRENTYDDQEDRQSGRAVSRNGKNTEHLTL 468
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7AL01 | E-Value: 0.000e+0, PID: 59.72 | (Putative heat stress transcription factor A-5 {EC... [more] |
| A0A5J5ACN4 | E-Value: 0.000e+0, PID: 60.16 | HSF_DOMAIN domain-containing protein {ECO:0000259|... [more] |
| A0A5J5BYU4 | E-Value: 1.786e-178, PID: 60.13 | HSF_DOMAIN domain-containing protein {ECO:0000259|... [more] |
| A0A2R6RS00 | E-Value: 4.238e-173, PID: 61.28 | (Heat stress transcription factor A-5 like {ECO:00... [more] |
| A0A4S4F280 | E-Value: 3.813e-172, PID: 59.32 | HSF_DOMAIN domain-containing protein {ECO:0000259|... [more] |
| A0A7J7GNA9 | E-Value: 3.813e-172, PID: 59.32 | HSF_DOMAIN domain-containing protein {ECO:0000259|... [more] |
| A0A0U3TZ73 | E-Value: 1.242e-171, PID: 56.34 | (Transcription factor HsfA5a {ECO:0000313|EMBL:ALV... [more] |
| A0A5C7ITP0 | E-Value: 3.920e-171, PID: 55.90 | HSF_DOMAIN domain-containing protein {ECO:0000259|... [more] |
| A0A4U5QQ34 | E-Value: 3.424e-168, PID: 57.82 | (Heat Stress Transcription Factor family protein {... [more] |
| A0A2R6RXQ3 | E-Value: 7.983e-168, PID: 58.70 | (Heat stress transcription factor A-5 like {ECO:00... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |