Resource Type:
Polypeptide
Name:
DCAR_027497
Identifier:
DCAR_027497.mRNA-protein
Sequence:
MLSRFISKPLHQNLRLISFLISSHPHPPPTPTHFTSHSPQTHLSPNPSSS
SFTHFVKHFSTNNKNNNGDKTSWNFSSEIEDSSSFGGVLDTDEAGGDFSK
PGGAVGRDWVIEKDEDDEGFDLFKEVEGSVREVPKLGTVNQVWLDDKGDD
EGLDLFKQAEESVKEVGGHGEEEQENWATADGYQPWDLDSEDKGDDVFGL
GETEMSGGVEGEVGGQETQKSIEDRLLLEKEEKELSVVLKGPDRAFGDLV
ATSGITEEMLESLIALKDLEGIQGLPPLSEIEDIRYEKNTRKSSRADIER
LKQEEVANARVRQVDSKGRAYGTGKRKCSIARVWIEPGEGKFVVNDKQFD
VYFPMLDQRAALLRPFTETKTLGLWDVNCTVKGGGISGQVGAIRLGISRA
LQNWEPDLRPPLKEAGFLTRDSRVVERKKPGKAKARKSFQWVKR*
Sequence Length:
445
Sequence Checksum:
3523fa5219f8823ea723f363e17ba5e7
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_027497, derives from mRNA, DCAR_027497. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_027497 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_027497 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AS09 ((Uncharacterized protein {ECO:0000313|EMBL:MPA59510.1}) (Fragment))
HSP 1 Score: 452.595 bits (1163), Expect = 3.921e-155
Identity = 263/474 (55.49%), Postives = 320/474 (67.51%), Query Frame = 0
Match: A0A5B7AS09 ((Uncharacterized protein {ECO:0000313|EMBL:MPA59510.1}) (Fragment))
HSP 1 Score: 452.595 bits (1163), Expect = 3.921e-155
Identity = 263/474 (55.49%), Postives = 320/474 (67.51%), Query Frame = 0
Query: 1 MLSRFISKPLHQNLRLISFLISSHPH---PPPTPTHFTSHSPQTHLSPNPSSSSFTHFVKHFSTNNKNN-NGDKTS----------WNFSSEI---------EDSSSFGGVLDTDEAGGDFSKPGGAVGRDWVIEKDEDDEGFDLFKEVEGSVREVPKLGTVNQVWLDDKGDDEGLDLFKQAEESVKEVGGHGEEEQENWATADGYQPWDLDSEDKGDDVFGLGE-------TEMSGGVEGEVGGQETQKSIEDRLLLEKEEKELSVVLKGPDRAFGDLVATSGITEEMLESLIALKDLEGIQGLPPLSEIEDIRYEKNTRKSSRADIERLKQEEVANARVRQVDSKGRAYGTGKRKCSIARVWIEPGEGKFVVNDKQFDVYFPMLDQRAALLRPFTETKTLGLWDVNCTVKGGGISGQVGAIRLGISRALQNWEPDLRPPLKEAGFLTRDSRVVERKKPGKAKARKSFQWVKR 444
MLSRFIS+P H LRL++ LI+S H P P P H T H P NP+ S F + FS+N +NN +G+ S W S++ EDS S G++D D D +P W+ + E + D+FK ++ ++ E K+G V+ ++WAT DGY+PW+L E+K D+ F + E +EM GGV G+ G E++KS ED+ L +EEK L+ VLKGP+RAFGDL+A SGITE ML+SLIALKDLE +QGLPPL EIED+RY+KNTRKS+RA+IER KQEEVA ARVRQVD KGRAYGTG+RKCSIARVWI+PG+GKF+VNDK+FDVYFPMLD RAALLRPF+ET TLGLWDV+CTVKGGG+SGQVGA+RLGISRALQNWEPDLRPPL+ AGFLTRD RVVERKKPGKAKARKSFQWVKR
Sbjct: 5 MLSRFISRPSH--LRLLT-LITSQNHFLNPKPHPLH-TLHPPIR----NPNFSFFFETSRCFSSNRQNNGDGNNRSQDQPTSTSDLWKLSADNDQTVDSVFGEDSGSLEGIVDGD-VSADGERPED---ESWLKDSTEGGDNDDIFKGIDTNIGE-NKIGDVD----------------------------------DDWATVDGYKPWNLVDEEKDDNAFNIKEGTSEEGISEM-GGVRGDEG-VESEKSEEDQQLA-REEKALTTVLKGPNRAFGDLIAASGITESMLDSLIALKDLEDVQGLPPLREIEDMRYDKNTRKSTRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETMTLGLWDVSCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPPLRAAGFLTRDPRVVERKKPGKAKARKSFQWVKR 428
BLAST of DCAR_027497 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7AVR9 ((Uncharacterized protein {ECO:0000313|EMBL:MPA59511.1}) (Fragment))
HSP 1 Score: 449.514 bits (1155), Expect = 6.929e-154
Identity = 257/471 (54.56%), Postives = 317/471 (67.30%), Query Frame = 0
Match: A0A5B7AVR9 ((Uncharacterized protein {ECO:0000313|EMBL:MPA59511.1}) (Fragment))
HSP 1 Score: 449.514 bits (1155), Expect = 6.929e-154
Identity = 257/471 (54.56%), Postives = 317/471 (67.30%), Query Frame = 0
Query: 1 MLSRFISKPLHQNLRLISFLISSHPHPPPTPTHFTSHSPQTHLSPNPSSSSFTHFVKHFSTNNKNN-NGDKTS----------WNFSSEI---------EDSSSFGGVLDTDEAGGDFSKPGGAVGRDWVIEKDEDDEGFDLFKEVEGSVREVPKLGTVNQVWLDDKGDDEGLDLFKQAEESVKEVGGHGEEEQENWATADGYQPWDLDSEDKGDDVFGLGE-------TEMSGGVEGEVGGQETQKSIEDRLLLEKEEKELSVVLKGPDRAFGDLVATSGITEEMLESLIALKDLEGIQGLPPLSEIEDIRYEKNTRKSSRADIERLKQEEVANARVRQVDSKGRAYGTGKRKCSIARVWIEPGEGKFVVNDKQFDVYFPMLDQRAALLRPFTETKTLGLWDVNCTVKGGGISGQVGAIRLGISRALQNWEPDLRPPLKEAGFLTRDSRVVERKKPGKAKARKSFQWVKR 444
MLSRFIS+P H LRL++ + S + HF + P + NP+ S F + FS+N +NN +G+ S W S++ EDS S G++D D D +P W+ + E + D+FK ++ ++ E K+G V+ ++WATADGY+PW+L E+K D+ F + E +EM GGV G+ G E++KS ED+ L +EEK L+ VLKGP+RAFGDL+A SGITE ML+SLIALKDLE +QGLPPL EIED+RY+KNTRKS+RA+IER KQEEVA ARVRQVD KGRAYGTG+RKCSIARVWI+PG+GKF+VNDK+FDVYFPMLD RAALLRPF+ET TLGLWDV+CTVKGGG+SGQVGA+RLGISRALQNWEPDLRPPL+ AGFLTRD RVVERKKPGKAKARKSFQWVKR
Sbjct: 14 MLSRFISRPSH--LRLLTLITSQN--------HFLNPKPHPPIR-NPNFSFFFETSRCFSSNRQNNGDGNNRSQDQPTSTSDLWKLSADNDQTVDSVFGEDSGSLEGIVDGD-VSADGERP---EDESWLKDSTEGGDNDDIFKGIDTNIGE-NKIGDVD----------------------------------DDWATADGYKPWNLVDEEKDDNAFNIKEGTSEEGISEM-GGVRGDEG-VESEKSEEDQQLA-REEKALTTVLKGPNRAFGDLIAASGITESMLDSLIALKDLEDVQGLPPLREIEDMRYDKNTRKSTRAEIERQKQEEVAKARVRQVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRAALLRPFSETMTLGLWDVSCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPPLRAAGFLTRDPRVVERKKPGKAKARKSFQWVKR 431
BLAST of DCAR_027497 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6RSU4 ((30S ribosomal protein {ECO:0000313|EMBL:PSS33049.1}))
HSP 1 Score: 439.499 bits (1129), Expect = 3.023e-150
Identity = 257/446 (57.62%), Postives = 309/446 (69.28%), Query Frame = 0
Match: A0A2R6RSU4 ((30S ribosomal protein {ECO:0000313|EMBL:PSS33049.1}))
HSP 1 Score: 439.499 bits (1129), Expect = 3.023e-150
Identity = 257/446 (57.62%), Postives = 309/446 (69.28%), Query Frame = 0
Query: 1 MLSRFISKPLHQNLRLISFLISSHPHPPPTPTHFTSHSPQTHLSPNPSSSSFTHFVKHFSTNNKNNNGDKTSWNFSSEIEDSSSFGGVLDTDEAGGDFSKPGGAVGRDWVIEKDEDDEGFDLFKEVEGSVREVPKLGTVNQVWLDDKGDDEGLDLFKQAEESVKEVGGHGEEEQENWATADGYQPWDLDSEDKGDDVFGLGE--TEMSGGVEGEVGGQETQKSIEDRLLLEKEEKELSVVLKGPDRAFGDLVATSGITEEMLESLIALKDLEGIQGLPPLSEIEDIRYEKNTRKSSRADIERLKQEEVANARVRQVDSKGRAYGTGKRKCSIARVWIEPGEGKFVVNDKQFDVYFPMLDQRAALLRPFTETKTLGLWDVNCTVKGGGISGQVGAIRLGISRALQNWEPDLRPPLKEAGFLTRDSRVVERKKPGKAKARKSFQWVKR 444
ML+RF+++ H LRL++ + S + P P HF + P PNP + F V F ++N+NN+G G D DF W I +ED D +EG K + + ++G D D+FK E+S E+GG G+ +W TADGY+PW L E+KGD VF GE +EM G + V E +KS EDR L E+EEK LS VL+GP+RAFGDLVA SGITE ML+SLIALKD+E +QGLPPL EIED+RYEKNTRKSSRA+IER KQEEVA +RVR+VD KGRAYGTG+RKCSIARVWI+PG+GKF+VNDK+FDVYF MLD RAALLRPF+ETKTLGLWD++CTVKGGG+SGQVGA++LGISRALQNWEPDLRPPLK AGFLTRD+RVVERKKPGKAKARKSFQWVKR
Sbjct: 1 MLARFLTRSSH--LRLLTLISSQNHFSNPKPHHFHTSLPPI---PNPRPN-FPSVVPRFFSSNQNNDG------------------GNKDQRSLNADF----------WKISTEEDSVFGDDAGTLEGISGGDAKPEEDSWLSASEEGADTVDDIFKGVEKS--EIGGGGD----DWTTADGYKPWTLVEEEKGDQVFDFGEEVSEMRSGGDERV---EIEKSEEDRKL-EEEEKVLSTVLQGPNRAFGDLVAASGITEAMLDSLIALKDMESVQGLPPLREIEDMRYEKNTRKSSRAEIERQKQEEVAKSRVREVDEKGRAYGTGRRKCSIARVWIQPGDGKFLVNDKEFDVYFRMLDHRAALLRPFSETKTLGLWDISCTVKGGGLSGQVGAVQLGISRALQNWEPDLRPPLKAAGFLTRDARVVERKKPGKAKARKSFQWVKR 402
BLAST of DCAR_027497 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7D032 ((Ribosomal protein S5 domain 2-like superfamily protein {ECO:0000313|EMBL:KAF5739693.1}))
HSP 1 Score: 438.343 bits (1126), Expect = 4.683e-150
Identity = 247/450 (54.89%), Postives = 299/450 (66.44%), Query Frame = 0
Match: A0A7J7D032 ((Ribosomal protein S5 domain 2-like superfamily protein {ECO:0000313|EMBL:KAF5739693.1}))
HSP 1 Score: 438.343 bits (1126), Expect = 4.683e-150
Identity = 247/450 (54.89%), Postives = 299/450 (66.44%), Query Frame = 0
Query: 1 MLSRFISKPLHQNLRLISFLISSHPHPPPTPTHFTSHSPQTHLSPNPSSSSFTHFVKHFSTNNKNNNGDKT--SWNFSSEIEDSSSFGGVLDTDEAGGDFSKPGGAVGRDWVIEKDEDDEGFDLFKEVEGSVREVPKLGTVNQVWLDDKGDDEGLDLFKQAEESVKEVGGHGEEEQENWATADGYQPWDLDSEDKGDDVFGLGETEM----SGGVEGEVGGQETQKSIEDRLLLEKEEKELSVVLKGPDRAFGDLVATSGITEEMLESLIALKDLEGIQGLPPLSEIEDIRYEKNTRKSSRADIERLKQEEVANARVRQVDSKGRAYGTGKRKCSIARVWIEPGEGKFVVNDKQFDVYFPMLDQRAALLRPFTETKTLGLWDVNCTVKGGGISGQVGAIRLGISRALQNWEPDLRPPLKEAGFLTRDSRVVERKKPGKAKARKSFQWVKR 444
MLSR I K H RL+S + S P + + TS + F+ NN+N++ D++ SW FS E + G D + F E G++ + ++ GDD D+ +A++ E G GEE W TA+GY+PW L E+K DDVF +GET +G VE E +KS E++ L E EE++L+ VLKGP+RAFGDL+A SGIT ML+SLIALKDLEGI+GLPPLSEIED+RYEKNTRKSSRADIERLKQEE+A ARVRQVD KGRAYGTG+RKCSIARVW++PG+GKF+VNDK+FD YFPMLD RA+LLRPF+ETKTLGLWDV CTVKGGG+SGQV A+RLGISRALQNWEPDLRPPL++AGFLTRDSRVVERKKPG+AKARKSFQWVKR
Sbjct: 1 MLSRLIPKSSH--FRLLSNVYSKSQSNPASNNNLTSILKSSR------------FLSTNDNNNRNSSTDQSNGSWKFSRESD------GTFD------------------------------NFFGEDSGNIAGISGAESL------PGGDD---DVLGRADKETAENGVGGEE----WVTAEGYKPWSLVEEEK-DDVFDIGETTSEVAETGSVEDSSLRLEMEKSEENKRL-EIEEQQLTAVLKGPNRAFGDLIAASGITNAMLDSLIALKDLEGIEGLPPLSEIEDMRYEKNTRKSSRADIERLKQEEIAKARVRQVDDKGRAYGTGRRKCSIARVWVQPGDGKFIVNDKEFDTYFPMLDHRASLLRPFSETKTLGLWDVKCTVKGGGVSGQVDAVRLGISRALQNWEPDLRPPLRDAGFLTRDSRVVERKKPGRAKARKSFQWVKR 385
BLAST of DCAR_027497 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2G3CAH5 ((30S ribosomal protein S9 {ECO:0000313|EMBL:PHU15740.1}))
HSP 1 Score: 434.491 bits (1116), Expect = 1.184e-148
Identity = 250/450 (55.56%), Postives = 306/450 (68.00%), Query Frame = 0
Match: A0A2G3CAH5 ((30S ribosomal protein S9 {ECO:0000313|EMBL:PHU15740.1}))
HSP 1 Score: 434.491 bits (1116), Expect = 1.184e-148
Identity = 250/450 (55.56%), Postives = 306/450 (68.00%), Query Frame = 0
Query: 1 MLSRFISKPLHQNLRLISFLISSHPHPPPTPTHFTSHSPQT---HLSPNPSSSSFTHFVKHFSTNNKNNNGDKTSWNFSSEIEDSSSFGGVLDTDEAGGDFSKPGGAVGRDWVIE--KDEDDEGFDLFKEVEGSVREVPKLGTVNQVWLDDKGDDEGLDLFKQAEESVKEVGGHGEEEQENWATADGYQPWDLDSEDKGDDVFGLGETEMSGGVEGEVGGQETQKS-IEDRLLLEKEEKELSVVLKGPDRAFGDLVATSGITEEMLESLIALKDLEGIQGLPPLSEIEDIRYEKNTRKSSRADIERLKQEEVANARVRQVDSKGRAYGTGKRKCSIARVWIEPGEGKFVVNDKQFDVYFPMLDQRAALLRPFTETKTLGLWDVNCTVKGGGISGQVGAIRLGISRALQNWEPDLRPPLKEAGFLTRDSRVVERKKPGKAKARKSFQWVKR 444
MLSRFISK +LRL+ L P+ THF + P SPN +S+ +FST+N NNNG K W SSE E S V + ++G G V D + K+E++E D+FKE +G+ G GEE WATA+GY+PW D E +G+ VF + E+ VE E+ G E +++ ++++ LL+ EE+ L VLKGP+RAFGDL+A SGITEEM++SL+ L+DL+GIQGLPPLSEIE++RY+KNTRKSSRADIER KQEEVA ARV+QVD KGRAYGTG+RKCSIARVW+E G GKF VND++FDVYFPMLD RA LLRPFTETKTLGLWDV CTVKGGG+SGQVGAI+LGISRALQNW+P+LRPPL+E G+LTRDSRVVERKKPGKAKARKS+QWVKR
Sbjct: 1 MLSRFISKS-SSHLRLLIQL--------PSKTHFLNPKPILPIPFFSPNNNSN-------YFSTHNNNNNG-KDFWKLSSETEKS-----VFNQQDSGETVEGIGKQVLDDDDVPWGKEEEEENTDVFKEEKGA--------------------------------------GDGEE---IWATAEGYKPWSFDVEGEGEPVFNVDVGEVLK-VETEIKGFEDEEAKLQEKKLLDVEEQALKEVLKGPNRAFGDLIAASGITEEMMDSLLVLRDLDGIQGLPPLSEIEEMRYQKNTRKSSRADIERQKQEEVAKARVKQVDEKGRAYGTGRRKCSIARVWVERGGGKFTVNDEEFDVYFPMLDHRAFLLRPFTETKTLGLWDVRCTVKGGGVSGQVGAIQLGISRALQNWDPELRPPLREGGYLTRDSRVVERKKPGKAKARKSYQWVKR 386
BLAST of DCAR_027497 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2I4HSZ4 ((30S ribosomal protein S9, mitochondrial {ECO:0000313|RefSeq:XP_018859271.2, ECO:0000313|RefSeq:XP_018859272.2}))
HSP 1 Score: 432.565 bits (1111), Expect = 5.437e-148
Identity = 243/454 (53.52%), Postives = 287/454 (63.22%), Query Frame = 0
Match: A0A2I4HSZ4 ((30S ribosomal protein S9, mitochondrial {ECO:0000313|RefSeq:XP_018859271.2, ECO:0000313|RefSeq:XP_018859272.2}))
HSP 1 Score: 432.565 bits (1111), Expect = 5.437e-148
Identity = 243/454 (53.52%), Postives = 287/454 (63.22%), Query Frame = 0
Query: 1 MLSRFISKPLHQNLRLISFLISSHPHPPPTPTHFTSHSPQTHLSPNPSSSSFTHFVKHFSTNNKNNNGDKTSWNFSSEIEDSSSFGGVLDTDEAGGDFSKPGGAVGRDWVIEKDEDDEGFDLFKEVEGSVREVPKLGTVNQVWLDDKGDDEGLDLFKQAEESVKEVGGHGEEEQENWATADGYQPWDLDSEDKGDDVFGLGETEMSGGVEGEVGGQETQKSI----------EDRLLLEKEEKELSVVLKGPDRAFGDLVATSGITEEMLESLIALKDLEGIQGLPPLSEIEDIRYEKNTRKSSRADIERLKQEEVANARVRQVDSKGRAYGTGKRKCSIARVWIEPGEGKFVVNDKQFDVYFPMLDQRAALLRPFTETKTLGLWDVNCTVKGGGISGQVGAIRLGISRALQNWEPDLRPPLKEAGFLTRDSRVVERKKPGKAKARKSFQWVKR 444
MLSR + K H RL++ LI S HP + P H SPNP S F H ++NN G F P + W + +D D G ++Q D GL + ++S +E W TA+GY+PW E+ DDVFGL E GV+ ++ E + S E+ + LE+EE+ELS +LKGP+RAFGDL+A SGIT+EML+SLIALKD GI+GLPPLSEIE++RYEKNTRK +RA+IER KQEEVA ARVRQVD KGRAYGTG+RKCSIARVWIEPG+GKFVVNDKQFDVYFPMLD RAALLRPF+ETKTLGLWDV+CTVKGGG+SGQVGA+RLGISRALQNWEPD+RP L+ AGFLTRDSRVVERKKPGKAKARKSFQWVKR
Sbjct: 1 MLSRLLPKASH--FRLLT-LIPSKSHP---------YLPNPHFSPNPHFSPLKFFSDHSNSNN--------------------------------GKFD-PSAST--PWNLSRDSD--------------------GKLDQF----IAQDSGLSPASEDDQSWLRASEEKTNAEEEWTTAEGYKPWSFVEEESRDDVFGLKEE----GVQEDLRDTEAESSSFDDGADRDRREEAMRLEREEQELSAILKGPNRAFGDLIAASGITDEMLDSLIALKDFAGIEGLPPLSEIEEMRYEKNTRKITRAEIERQKQEEVARARVRQVDEKGRAYGTGRRKCSIARVWIEPGDGKFVVNDKQFDVYFPMLDHRAALLRPFSETKTLGLWDVSCTVKGGGVSGQVGAVRLGISRALQNWEPDMRPALRAAGFLTRDSRVVERKKPGKAKARKSFQWVKR 379
BLAST of DCAR_027497 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1U8HAA4 ((uncharacterized protein LOC107875740 {ECO:0000313|RefSeq:XP_016578048.1}))
HSP 1 Score: 430.254 bits (1105), Expect = 6.978e-147
Identity = 250/450 (55.56%), Postives = 306/450 (68.00%), Query Frame = 0
Match: A0A1U8HAA4 ((uncharacterized protein LOC107875740 {ECO:0000313|RefSeq:XP_016578048.1}))
HSP 1 Score: 430.254 bits (1105), Expect = 6.978e-147
Identity = 250/450 (55.56%), Postives = 306/450 (68.00%), Query Frame = 0
Query: 1 MLSRFISKPLHQNLRLISFLISSHPHPPPTPTHFTSHSPQT---HLSPNPSSSSFTHFVKHFSTNNKNNNGDKTSWNFSSEIEDSSSFGGVLDTDEAGGDFSKPGGAVGRDWVIE--KDEDDEGFDLFKEVEGSVREVPKLGTVNQVWLDDKGDDEGLDLFKQAEESVKEVGGHGEEEQENWATADGYQPWDLDSEDKGDDVFGLGETEMSGGVEGEVGGQETQKS-IEDRLLLEKEEKELSVVLKGPDRAFGDLVATSGITEEMLESLIALKDLEGIQGLPPLSEIEDIRYEKNTRKSSRADIERLKQEEVANARVRQVDSKGRAYGTGKRKCSIARVWIEPGEGKFVVNDKQFDVYFPMLDQRAALLRPFTETKTLGLWDVNCTVKGGGISGQVGAIRLGISRALQNWEPDLRPPLKEAGFLTRDSRVVERKKPGKAKARKSFQWVKR 444
MLSRFISK +LRL+ L P+ THF + P SPN +S+ +FST+N NNNG K W SSE E S V + ++G G V D + K+E++E D+FKE +G+ G GEE WATA+GY+PW D E +G+ VF + E+ VE E+ G E +++ ++++ LL+ EE+ L VLKGP+RAFGDL+A SGITEEM++SL+ L+DL+GIQGLPPLSEIE++RY+KNTRKSSRADIER KQEEVA ARV+QVD KGRAYGTG+RKCSIARVW+E G GKF VND++FDVYFPMLD RA LLRPFTETKTLGLWDV CTVKGGG+SGQVGAI+LGISRALQNW+P+LRPPL+E G+LTRDSRVVERKKPGKAKARKS+QWVKR
Sbjct: 1 MLSRFISKS-SSHLRLLIQL--------PSKTHFLNPKPILPIPFFSPNNNSN-------YFSTHN-NNNG-KDFWKLSSETEKS-----VFNQQDSGETVEGIGKQVLDDDDVPWGKEEEEENTDVFKEEKGA--------------------------------------GDGEE---IWATAEGYKPWSFDVEGEGEPVFNVDVGEVLK-VETEIKGFEDEEAKLQEKKLLDVEEQALKEVLKGPNRAFGDLIAASGITEEMMDSLLVLRDLDGIQGLPPLSEIEEMRYQKNTRKSSRADIERQKQEEVAKARVKQVDEKGRAYGTGRRKCSIARVWVERGGGKFTVNDEEFDVYFPMLDHRAFLLRPFTETKTLGLWDVRCTVKGGGVSGQVGAIQLGISRALQNWDPELRPPLREGGYLTRDSRVVERKKPGKAKARKSYQWVKR 385
BLAST of DCAR_027497 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VVF0 ((30S ribosomal protein S9, mitochondrial-like {ECO:0000313|RefSeq:XP_027107083.1}))
HSP 1 Score: 429.483 bits (1103), Expect = 5.144e-146
Identity = 263/467 (56.32%), Postives = 312/467 (66.81%), Query Frame = 0
Match: A0A6P6VVF0 ((30S ribosomal protein S9, mitochondrial-like {ECO:0000313|RefSeq:XP_027107083.1}))
HSP 1 Score: 429.483 bits (1103), Expect = 5.144e-146
Identity = 263/467 (56.32%), Postives = 312/467 (66.81%), Query Frame = 0
Query: 1 MLSRFISKPLHQNLRLISFLISSHPHPPPTPTHFTSHSPQTHLSP---NPSSSSFTHFVKHFSTNNKNNNGDKTS--WNFSSEIEDS--SSFGGVLDTDEAGGDFSKPGGAVGRDWVIEKDEDDEGFDLFKEVEGSVREVPKLGTVNQVWLDDK-----GDDEGLDLFKQAEESVKEVGGHGEEEQENWATADGYQPWDLDSEDKGD--DVF------GLGETEMSG--GVEGEVGGQETQK-SIEDRLLLEKEEKELSVVLKGPDRAFGDLVATSGITEEMLESLIALKDLEGIQGLPPLSEIEDIRYEKNTRKSSRADIERLKQEEVANARVRQVDSKGRAYGTGKRKCSIARVWIEPGEGKFVVNDKQFDVYFPMLDQRAALLRPFTETKTLGLWDVNCTVKGGGISGQVGAIRLGISRALQNWEPDLRPPLKEAGFLTRDSRVVERKKPGKAKARKSFQWVKR 444
MLSR ISK NLR ++ LISS H +P +P T + P +P+ S HF +ST+N + D W SSE +DS S FG +E +E++E V +V + + WL + G D+G+D+FK E VK GG G E WATA+GY+PW EDK D ++F G+ E SG G+EG G +K S E+ LE EEK L+ VLKGP+RAFGDL+A SGITE ML+SLIALKDLEGIQGLPPL EIED+RY K+TRKS+RA+IER KQEE A ARVRQVD KGRAYGTG+RKCSIARVW++PG+GKFVVNDK+FD YFPMLD RAALLRPF+ETKTLG+WDV+CTVKGGG+SGQVGAI+LGISRALQNW PDLRPPL+E GFLTRDSRVVERKKPGKAKARKSFQWVKR
Sbjct: 1 MLSRLISK--SSNLRFLT-LISSQIHLQ-SPNPIFPQNPLTSIKPIYPHPNLSKIPHF---YSTSNNGDRQDSIPNLWQLSSEADDSIESIFG------------------------VESEENNE----------HVEQVKESANGSDSWLAESLDSGGGVDDGVDIFKGVTEEVKG-GGDG---HEGWATAEGYKPWSFAGEDKEDERNLFDVGGEEGVEERRESGEWGLEGSRGEDLVKKRSAEEEKQLEIEEKALTDVLKGPNRAFGDLIAASGITEAMLDSLIALKDLEGIQGLPPLREIEDMRYAKSTRKSARAEIERQKQEEAAKARVRQVDDKGRAYGTGRRKCSIARVWVQPGDGKFVVNDKEFDFYFPMLDHRAALLRPFSETKTLGMWDVSCTVKGGGVSGQVGAIQLGISRALQNWAPDLRPPLREGGFLTRDSRVVERKKPGKAKARKSFQWVKR 422
BLAST of DCAR_027497 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6I9SZY0 ((28S ribosomal protein S9, mitochondrial {ECO:0000313|RefSeq:XP_011076481.2}))
HSP 1 Score: 429.098 bits (1102), Expect = 5.660e-146
Identity = 265/468 (56.62%), Postives = 301/468 (64.32%), Query Frame = 0
Match: A0A6I9SZY0 ((28S ribosomal protein S9, mitochondrial {ECO:0000313|RefSeq:XP_011076481.2}))
HSP 1 Score: 429.098 bits (1102), Expect = 5.660e-146
Identity = 265/468 (56.62%), Postives = 301/468 (64.32%), Query Frame = 0
Query: 1 MLSRFISKPLHQNLRLISFLISSHPH---PPPTPTHFTSHSPQTHLSPNPSSSSFTHFVKHFSTNNKN-NNGDKTS------WNFSSEIEDSSSFGGVLDTDEAGGDFSKPGGAVGRDWVIEKDEDDEGFDLFKEVEGSVREVPKLGTVNQVWLDDKGDDEGLDLFKQAEESVKEVGGH----GEEE---QENWATADGYQPWDLDSEDKGD---DVFGL----GETEMSGGVEGEVGGQETQKSIEDRLLLEKEEKELSVVLKGPDRAFGDLVATSGITEEMLESLIALKDLEGIQGLPPLSEIEDIRYEKNTRKSSRADIERLKQEEVANARVRQVDSKGRAYGTGKRKCSIARVWIEPGEGKFVVNDKQFDVYFPMLDQRAALLRPFTETKTLGLWDVNCTVKGGGISGQVGAIRLGISRALQNWEPDLRPPLKEAGFLTRDSRVVERKKPGKAKARKSFQWVKR 444
MLSRFISK Q RL++ L+SS H P P + SP HF FST N N+GD ++ W SSE++ D D FS G++ EG D G R++ GDD+ D F + + GG GEE E WATAD YQPW E K + DVFG+ GE +SG +G G ++ E LE EEK L+ +LKGPDRAFGDL++ SGIT+EML+SLIALKD EGIQGLPPLSEIED+RYEKNTRKSSRA+IER KQEEVA ARVRQVD KGRAYGTGKRKCSIARVWI+PG+GKF VNDK+FDVYFPMLD RAALLRPF+ETKTLG+WDV+CTVKGGG SGQVGAIRLGISRALQNWEP RPPLKEAGFLTRDSRVVERKKPGKAKARKSFQWVKR
Sbjct: 1 MLSRFISKS-SQFHRLLT-LVSSKSHLVNPKPIARGPVFSGSTQYFSPRA-----PHFY-FFSTKGGNGNSGDDSAASGADLWKLSSEVDQ--------DIDSV---FSVESGSL------------EGID---NQNGGERKI--------------GDDKIADPFSRVDGKEWSFGGSDVVGGEESTGGNEEWATADDYQPWSFSEEGKEEGEEDVFGIEAESGEIGISGFGDGVGEGLGGIENREQEKQLESEEKALTAILKGPDRAFGDLISASGITDEMLDSLIALKDFEGIQGLPPLSEIEDMRYEKNTRKSSRAEIERQKQEEVAKARVRQVDEKGRAYGTGKRKCSIARVWIQPGDGKFFVNDKEFDVYFPMLDHRAALLRPFSETKTLGMWDVSCTVKGGGTSGQVGAIRLGISRALQNWEPGFRPPLKEAGFLTRDSRVVERKKPGKAKARKSFQWVKR 420
BLAST of DCAR_027497 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1J6IVI7 ((30s ribosomal protein s9, chloroplastic {ECO:0000313|EMBL:OIT04592.1}))
HSP 1 Score: 427.557 bits (1098), Expect = 1.054e-145
Identity = 254/451 (56.32%), Postives = 308/451 (68.29%), Query Frame = 0
Match: A0A1J6IVI7 ((30s ribosomal protein s9, chloroplastic {ECO:0000313|EMBL:OIT04592.1}))
HSP 1 Score: 427.557 bits (1098), Expect = 1.054e-145
Identity = 254/451 (56.32%), Postives = 308/451 (68.29%), Query Frame = 0
Query: 1 MLSRFISKPLHQNLRLISFLISSHPHPPPTPTHFTSHSPQTHLS--PNPSSSSFTHFVKHFSTNNKNNNGDKTSWNFSSEIEDSSSFGGVLDTDEAGGDFSKPGGAVGRDWVIEKDEDDEGFDL-FKEVEGSVREVPKLGTVNQVWLDDKGDDEGLDLFKQAEESVKEVGGHGEEEQENWATADGY-QPWDLDSEDKGDDVFGLGETEMSGGVEGEVGGQETQKSIED---RLLLEKEEKELSVVLKGPDRAFGDLVATSGITEEMLESLIALKDLEGIQGLPPLSEIEDIRYEKNTRKSSRADIERLKQEEVANARVRQVDSKGRAYGTGKRKCSIARVWIEPGEGKFVVNDKQFDVYFPMLDQRAALLRPFTETKTLGLWDVNCTVKGGGISGQVGAIRLGISRALQNWEPDLRPPLKEAGFLTRDSRVVERKKPGKAKARKSFQWVKR 444
MLSRFISK H LRL++ L P+ THF + P + +S P P F FST N NNNG+ D++ + D W + + D F+ + VEG +V G+ W + +E D+FK+ K VGG E+E WATA+GY + W D E +G+ VF +GE E+ VE ++ G E + +E+ + LLE EEK L+ VLKGP+RAFGDL+A SGIT+EML+SLIAL+DL+ I+GLPPL EIED+RYEKNTRKSSRADIER KQEEVA ARV+QVD KGRAYGTG+RKCSIARVW+EPG GKF+VNDK+FDVYFPMLD RA LLRPFTETKTLG+WDV CTVKGGG+SGQVGAI+LGISRALQNW+P+LRPPL+E G+LTRDSRVVERKKPGKAKARKSFQWVKR
Sbjct: 1 MLSRFISKSSH--LRLLTLL--------PSKTHFLNPKPISPISSFPIPKPYFFPSNTHFFSTGN-NNNGE--------------------DSEPSSSDL----------WKLSSESDQSLFNEDIESVEGIQTQVLDDGS----WAKQEEKEESGDVFKEN----KGVGGGREDEI--WATAEGYNKAWSFDVEGEGEKVFDVGEEEVI--VETKIMGFEEEGKLENAEEKKLLELEEKALTEVLKGPNRAFGDLIAASGITDEMLDSLIALRDLDDIKGLPPLREIEDMRYEKNTRKSSRADIERQKQEEVAKARVKQVDEKGRAYGTGRRKCSIARVWVEPGAGKFMVNDKEFDVYFPMLDHRAVLLRPFTETKTLGMWDVRCTVKGGGVSGQVGAIQLGISRALQNWDPELRPPLREGGYLTRDSRVVERKKPGKAKARKSFQWVKR 398
| Match Name | Stats | Description |
|---|---|---|
| A0A5B7AS09 | E-Value: 3.921e-155, PID: 55.49 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5951... [more] |
| A0A5B7AVR9 | E-Value: 6.929e-154, PID: 54.56 | (Uncharacterized protein {ECO:0000313|EMBL:MPA5951... [more] |
| A0A2R6RSU4 | E-Value: 3.023e-150, PID: 57.62 | (30S ribosomal protein {ECO:0000313|EMBL:PSS33049.... [more] |
| A0A7J7D032 | E-Value: 4.683e-150, PID: 54.89 | (Ribosomal protein S5 domain 2-like superfamily pr... [more] |
| A0A2G3CAH5 | E-Value: 1.184e-148, PID: 55.56 | (30S ribosomal protein S9 {ECO:0000313|EMBL:PHU157... [more] |
| A0A2I4HSZ4 | E-Value: 5.437e-148, PID: 53.52 | (30S ribosomal protein S9, mitochondrial {ECO:0000... [more] |
| A0A1U8HAA4 | E-Value: 6.978e-147, PID: 55.56 | (uncharacterized protein LOC107875740 {ECO:0000313... [more] |
| A0A6P6VVF0 | E-Value: 5.144e-146, PID: 56.32 | (30S ribosomal protein S9, mitochondrial-like {ECO... [more] |
| A0A6I9SZY0 | E-Value: 5.660e-146, PID: 56.62 | (28S ribosomal protein S9, mitochondrial {ECO:0000... [more] |
| A0A1J6IVI7 | E-Value: 1.054e-145, PID: 56.32 | (30s ribosomal protein s9, chloroplastic {ECO:0000... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |