Resource Type:
Polypeptide
Name:
DCAR_026534
Identifier:
DCAR_026534.mRNA-protein
Sequence:
MSSSNFRSLTIILLILVLGWSSTFETCDARRGKHWRHNRNFPTSLSKKKG
KNHVSSHHHSNGNKPKPKTPSPVAPAPPATKPKDDNTPAPPTKDHNYIAA
STYHVLDFGAKGDGKTDDTKAFEAAWAAACKVEASTIVVPSDYVFVVGPV
SFSGPYCQNDIVFQLDGTIIAPTNFKAFGSGLFQWIQFTKLVGITVQGKG
VIDGRGSIWWQDSSLEDPLDNESELVVPLNSTVKKHLPVPISSSLGQMPS
IKPTALRFYGSFNVTVTGITIQNSPLCHLKFDNCLGVSVYNISVSSPGDS
PNTDGIHLQNSRDVLIRTANIACGDDCISIQTGCSNVYVHNVNCGPGHGI
SIGGLGRDNTKACVSNITVRDVNMHNTTNGVRIKTWQGGSGSVQGVLFSN
IQVSEVQFPIIIDQFYCDKAKCKNQTTAVALSGITYERIRGTYTVKPVHF
ACSDSLPCTEVTLNAINLKPIQEKYHMYDPFCWRTFGELYSATVPPIECI
EVGKPSNNRIQSNHDLC*
Sequence Length:
518
Sequence Checksum:
783e8bfa29eeadbc622d16a0966261f2
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_026534, derives from mRNA, DCAR_026534. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_026534 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_026534 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4U5MBA2 ((Polygalacturonase {ECO:0000313|EMBL:TKR66232.1}))
HSP 1 Score: 786.178 bits (2029), Expect = 0.000e+0
Identity = 373/520 (71.73%), Postives = 439/520 (84.42%), Query Frame = 0
Match: A0A4U5MBA2 ((Polygalacturonase {ECO:0000313|EMBL:TKR66232.1}))
HSP 1 Score: 786.178 bits (2029), Expect = 0.000e+0
Identity = 373/520 (71.73%), Postives = 439/520 (84.42%), Query Frame = 0
Query: 1 MSSSNFRSLTIILLILVLGWSSTFETCDARRGKHWRHNRNFPTSLSKKKGKNHVSSHH-HSNGNKPKPKTPSPVAPAPPATKPKDDN-TPAPPTKDHNYIAASTYHVLDFGAKGDGKTDDTKAFEAAWAAACKVEASTIVVPSDYVFVVGPVSFSGPYCQNDIVFQLDGTIIAPTNFKAFGSGLFQWIQFTKLVGITVQGKGVIDGRGSIWWQDSSLEDPLDNESELVVPLNSTVKKHLPVPISSSL-GQMPSIKPTALRFYGSFNVTVTGITIQNSPLCHLKFDNCLGVSVYNISVSSPGDSPNTDGIHLQNSRDVLIRTANIACGDDCISIQTGCSNVYVHNVNCGPGHGISIGGLGRDNTKACVSNITVRDVNMHNTTNGVRIKTWQGGSGSVQGVLFSNIQVSEVQFPIIIDQFYCDKAKCKNQTTAVALSGITYERIRGTYTVKPVHFACSDSLPCTEVTLNAINLKPIQEKYHMYDPFCWRTFGELYSATVPPIECIEVGKPSNNRIQSNHDLC 517
MS +FRSLT +L I +L WSS+F TC+ARRGKHWR +R SL+KKKGKN +SH H NG P PPA PKDD P+PP K +++T++VLDFGAKGDGK+DDTKAF+AAWA ACKV AST++VP++Y F+VGP+SFSGPYCQ +IVFQLDGTIIAPTN A+G GLFQW+ FTKLVGIT+QG+G IDG GS+WWQD EDP+DNESE +VPLN+T ++H P+P+ S L G+MPSIKPTALRFYGSFNVTVTGITIQNSP CHLKFDNC+GV V+++ SSPGDSPNTDGIHLQNS+DVLI + ++ACGDDC+SIQTGCSNVY+HNVNCGPGHGISIGGLG+DNTKACVSNITVRDV MH T GVRIKTWQGGSGSVQGVLFSNIQVSEVQ PI+IDQFYCDK+KCKNQT+AVALSGITYE+IRGTYTVKPVHFACSD+LPC +V+L I L+P +E+YH+YDPFCW+TFGEL + T+PPI C+++GKPS+NR QS+HD C
Sbjct: 1 MSGFSFRSLTFMLFIALLVWSSSFHTCNARRGKHWRESRGNSASLAKKKGKNQGNSHQKHHNGVSKPKPPPQKAPSLPPA--PKDDAPAPSPPKK-----SSTTFNVLDFGAKGDGKSDDTKAFQAAWAEACKVAASTMIVPAEYAFLVGPISFSGPYCQANIVFQLDGTIIAPTNSNAWGRGLFQWLDFTKLVGITIQGEGTIDGSGSVWWQDYPFEDPIDNESEFIVPLNNTAQQHPPMPVRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDMRTSSPGDSPNTDGIHLQNSKDVLIHSTDLACGDDCVSIQTGCSNVYIHNVNCGPGHGISIGGLGKDNTKACVSNITVRDVVMHGTMTGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKSKCKNQTSAVALSGITYEKIRGTYTVKPVHFACSDALPCMDVSLTTIELQPQKEQYHLYDPFCWQTFGELTTPTMPPISCLQIGKPSSNRPQSDHDTC 513
BLAST of DCAR_026534 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6HHV8 ((Uncharacterized protein {ECO:0000313|EMBL:CCB51795.1}))
HSP 1 Score: 784.637 bits (2025), Expect = 0.000e+0
Identity = 381/518 (73.55%), Postives = 441/518 (85.14%), Query Frame = 0
Match: F6HHV8 ((Uncharacterized protein {ECO:0000313|EMBL:CCB51795.1}))
HSP 1 Score: 784.637 bits (2025), Expect = 0.000e+0
Identity = 381/518 (73.55%), Postives = 441/518 (85.14%), Query Frame = 0
Query: 1 MSSSNFRSLTIILLILVLGWSSTFETCDARRGKHWRHNRNFPTSLSKKKGKNHVSSHHHSNGNKPKPKTPSPVAPAPPATKPKDDNTPAPPTKDHNYIAASTYHVLDFGAKGDGKTDDTKAFEAAWAAACKVEASTIVVPSDYVFVVGPVSFSGPYCQNDIVFQLDGTIIAPTNFKAFGSGLFQWIQFTKLVGITVQGKGVIDGRGSIWWQDSSLEDPLDNESELVVPLNSTVKKHLPVPISSSLG-QMPSIKPTALRFYGSFNVTVTGITIQNSPLCHLKFDNCLGVSVYNISVSSPGDSPNTDGIHLQNSRDVLIRTANIACGDDCISIQTGCSNVYVHNVNCGPGHGISIGGLGRDNTKACVSNITVRDVNMHNTTNGVRIKTWQGGSGSVQGVLFSNIQVSEVQFPIIIDQFYCDKAKCKNQTTAVALSGITYERIRGTYTVKPVHFACSDSLPCTEVTLNAINLKPIQEKYHMYDPFCWRTFGELYSATVPPIECIEVGKPSNNRIQSNHDLC 517
MS +FR L +LL L WSS+ TC ARRGKHWRH+R SLSKKK K+H S HH G+K KPK PSP PK + TP PP K + T++VLDFGAKGDG TDDTKAF++AWA+ACKVEASTIVVPS+YVF+VGP+SFSGPYC+ +IVFQLDGTIIAPTN KA+GSGL WI+FTKL GIT++G GVIDG+GS+WWQDS +DP+D+E++L++PLN T K++ P+PI+S LG +MPS KPTALRFYGSFNVTVTGITIQNSP CHLKFDNC+GVSVY +SVSSPGDS NTDGIHLQNS+DVLI N+ACGDDC+SIQTGCSNVY+HNVNCGPGHGISIGGLGRD TKACVSNITVRD+ MHNT NGVRIKTWQGGSGSVQGVLFSNIQVSEV+ PI+IDQFYCDK KCKNQT+AVALSGITYE+I+GTYTVKPVHFACSD+LPC +VTL I LKP+QE+YHMYDPFCW+TFGEL + TVPPI+C+++GKPS+NRIQS+HD C
Sbjct: 14 MSGLSFRRLAFMLLFAFLVWSSSTGTCHARRGKHWRHSRAASASLSKKKAKSHGSGSHHHGGSKSKPKAPSP---------PKQEVTPPPPEKK----GSETFNVLDFGAKGDGDTDDTKAFQSAWASACKVEASTIVVPSEYVFLVGPISFSGPYCEANIVFQLDGTIIAPTNAKAWGSGLLWWIEFTKLRGITIRGNGVIDGKGSVWWQDSPFDDPVDDEAKLIIPLNRTAKENSPIPINSKLGSKMPSTKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCMGVSVYEMSVSSPGDSVNTDGIHLQNSKDVLIHATNLACGDDCVSIQTGCSNVYIHNVNCGPGHGISIGGLGRDGTKACVSNITVRDIIMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVELPIVIDQFYCDKGKCKNQTSAVALSGITYEKIKGTYTVKPVHFACSDNLPCMDVTLTGIELKPLQERYHMYDPFCWQTFGELTTPTVPPIDCLQIGKPSSNRIQSDHDSC 518
BLAST of DCAR_026534 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7D4U6 ((Pectin lyase-like superfamily protein {ECO:0000313|EMBL:KAF5741076.1}))
HSP 1 Score: 784.252 bits (2024), Expect = 0.000e+0
Identity = 367/523 (70.17%), Postives = 440/523 (84.13%), Query Frame = 0
Match: A0A7J7D4U6 ((Pectin lyase-like superfamily protein {ECO:0000313|EMBL:KAF5741076.1}))
HSP 1 Score: 784.252 bits (2024), Expect = 0.000e+0
Identity = 367/523 (70.17%), Postives = 440/523 (84.13%), Query Frame = 0
Query: 1 MSSSNFRSLTIILLILVLGWSSTFETCDARRGKHWRHNRNFPTSLSKKKGKNHVSSHHHSNGNKPKPKTPSPVAPAPPATKPKDDNTPAPPTKDHNYIAASTYHVLDFGAKGDGKTDDTKAFEAAWAAACKVEASTIVVPSDYVFVVGPVSFSGPYCQNDIVFQLDGTIIAPTNFKAFGSGLFQWIQFTKLVGITVQGKGVIDGRGSIWWQDSSLEDPLDNESELVVPLNSTVKKHLPVP-----ISSSLG-QMPSIKPTALRFYGSFNVTVTGITIQNSPLCHLKFDNCLGVSVYNISVSSPGDSPNTDGIHLQNSRDVLIRTANIACGDDCISIQTGCSNVYVHNVNCGPGHGISIGGLGRDNTKACVSNITVRDVNMHNTTNGVRIKTWQGGSGSVQGVLFSNIQVSEVQFPIIIDQFYCDKAKCKNQTTAVALSGITYERIRGTYTVKPVHFACSDSLPCTEVTLNAINLKPIQEKYHMYDPFCWRTFGELYSATVPPIECIEVGKPSNNRIQSNHDLC 517
M +FR+L L I L WSS+FE C ARRGKHWR +R SL+KKKG+++ S HHH NG PS AP P +KP +D P+PP K +N ++ ++VLDFGAKGDG TDDTKAF+A WAAACKVEAST++VP++Y F+VGP+SFSGPYCQ +IVFQLDG IIAPT+ A+G GL QW++FTKL+GIT+QGKG+IDG+GS WWQDS DP+D+E++L++PLN T+++ P+P ISS LG +MPSIKPTALRFYGSFNVTVTGITIQNSP CHLKFDNC GV V++++VSSPG+SPNTDGIHLQNS+DVLI ++ + CGDDC+SIQTGCSNVY+H+VNCGPGHGISIG LG+D TKACVSNIT+RDVNMHNT NGVRIKTWQGGSGSVQGVLFSNIQVSEVQ PI+IDQ+YCDK KC+NQT+AVALSGITYE+IRGTYTVKPVHFACSDSLPCT+V+LN I LKP+QE YHMYDPFCW+TFGEL + TVPP++C+++GKP NNR QS+ DLC
Sbjct: 1 MLRLSFRNLIFNLFIAFLVWSSSFENCIARRGKHWRQSRATSASLAKKKGESYNSGHHHHNGGSKPKAPPSHKAPVSPPSKPGEDIPPSPPQKGYNGGHSTIFNVLDFGAKGDGSTDDTKAFQATWAAACKVEASTMIVPAEYEFLVGPISFSGPYCQANIVFQLDGIIIAPTSSNAWGKGLLQWLEFTKLIGITIQGKGIIDGKGSGWWQDSPYGDPIDDEAKLIIPLNKTIERSPPMPVIISSISSELGGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCKGVLVHDMTVSSPGNSPNTDGIHLQNSKDVLIHSSTLGCGDDCVSIQTGCSNVYIHSVNCGPGHGISIGSLGKDATKACVSNITIRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQYYCDKRKCQNQTSAVALSGITYEKIRGTYTVKPVHFACSDSLPCTDVSLNTIELKPVQEYYHMYDPFCWQTFGELRTPTVPPVDCLQIGKPPNNRPQSDGDLC 523
BLAST of DCAR_026534 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BSK2 ((Uncharacterized protein {ECO:0000313|EMBL:MPA71478.1}) (Fragment))
HSP 1 Score: 783.867 bits (2023), Expect = 0.000e+0
Identity = 393/518 (75.87%), Postives = 454/518 (87.64%), Query Frame = 0
Match: A0A5B7BSK2 ((Uncharacterized protein {ECO:0000313|EMBL:MPA71478.1}) (Fragment))
HSP 1 Score: 783.867 bits (2023), Expect = 0.000e+0
Identity = 393/518 (75.87%), Postives = 454/518 (87.64%), Query Frame = 0
Query: 1 MSSSNFRSLTIILLILVLGWSSTFETCDARRGKHWRHNRNFPTSLSKKKGKNHVSSHHHSNGNKPKPKTPSPVAPAPPATKPKDDNTPAPPTKDHNYIAASTYHVLDFGAKGDGKTDDTKAFEAAWAAACKVEASTIVVPSDYVFVVGPVSFSGPYCQNDIVFQLDGTIIAPTNFKAFGSGLFQWIQFTKLVGITVQGKGVIDGRGSIWWQDSSLEDPLDNESELVVPLNSTVKKHLPVPISSSLG-QMPSIKPTALRFYGSFNVTVTGITIQNSPLCHLKFDNCLGVSVYNISVSSPGDSPNTDGIHLQNSRDVLIRTANIACGDDCISIQTGCSNVYVHNVNCGPGHGISIGGLGRDNTKACVSNITVRDVNMHNTTNGVRIKTWQGGSGSVQGVLFSNIQVSEVQFPIIIDQFYCDKAKCKNQTTAVALSGITYERIRGTYTVKPVHFACSDSLPCTEVTLNAINLKPIQEKYHMYDPFCWRTFGELYSATVPPIECIEVGKPSNNRIQSNHDLC 517
MS +FRSLT +L I L WSS TCDARRGKHWR +R+ SL KKKGKNH SSHHHSNG K K K PSP AP PP PK+ PP K ++ ++ + VLDFGAKGDG TDDTKAF+AAWAAACKVEASTIVVPS++VF+VGP+SFSGPYCQ +IVFQLDGTIIAPT+ KA+GSGL QW++FTKL+GITV G GVIDGRGS+WWQDS +DP+D+E++LVVPLN+TV+++ P+PI+S LG +MPSIKPTALRFYGSFNVTVTGITIQNSP CHLKFDNC+GVSVYN+SVSSPGDSPNTDGIHLQNSRDVLI + N+ACGDDC+SIQTGCSN+YVHNVNCGPGHGISIGGLGRDNTKACVSNITVR++ MHNT NGVRIKTWQGGSGSVQGVLFSNIQVSEVQ PI+IDQ+YCDK+KCKNQT+AVALSGIT+E+IRGTY VKPVH ACSDSLPCTEVTL AI L+P+QE+YHMYDPFCW+TFGEL + TVPPI+C+++GK S+N+ Q++ D C
Sbjct: 7 MSGLSFRSLTFMLAIAFLVWSSNIGTCDARRGKHWRQSRSATASLYKKKGKNHGSSHHHSNGGKSKTKAPSPKAPPPPTPGPKEGIPSTPPKKGYSNDPSTIFDVLDFGAKGDGSTDDTKAFQAAWAAACKVEASTIVVPSEFVFLVGPISFSGPYCQPNIVFQLDGTIIAPTSSKAWGSGLLQWLEFTKLIGITVHGGGVIDGRGSVWWQDSPFDDPVDDETKLVVPLNNTVEENPPIPINSLLGGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCMGVSVYNMSVSSPGDSPNTDGIHLQNSRDVLIHSTNLACGDDCVSIQTGCSNIYVHNVNCGPGHGISIGGLGRDNTKACVSNITVRNIIMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQYYCDKSKCKNQTSAVALSGITFEKIRGTYVVKPVHLACSDSLPCTEVTLTAIELQPLQERYHMYDPFCWQTFGELNAPTVPPIDCLQIGKSSSNQPQTDGDSC 524
BLAST of DCAR_026534 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438E6L8 ((Polygalacturonase {ECO:0000313|EMBL:RVW43323.1}))
HSP 1 Score: 781.941 bits (2018), Expect = 0.000e+0
Identity = 380/518 (73.36%), Postives = 440/518 (84.94%), Query Frame = 0
Match: A0A438E6L8 ((Polygalacturonase {ECO:0000313|EMBL:RVW43323.1}))
HSP 1 Score: 781.941 bits (2018), Expect = 0.000e+0
Identity = 380/518 (73.36%), Postives = 440/518 (84.94%), Query Frame = 0
Query: 1 MSSSNFRSLTIILLILVLGWSSTFETCDARRGKHWRHNRNFPTSLSKKKGKNHVSSHHHSNGNKPKPKTPSPVAPAPPATKPKDDNTPAPPTKDHNYIAASTYHVLDFGAKGDGKTDDTKAFEAAWAAACKVEASTIVVPSDYVFVVGPVSFSGPYCQNDIVFQLDGTIIAPTNFKAFGSGLFQWIQFTKLVGITVQGKGVIDGRGSIWWQDSSLEDPLDNESELVVPLNSTVKKHLPVPISSSLG-QMPSIKPTALRFYGSFNVTVTGITIQNSPLCHLKFDNCLGVSVYNISVSSPGDSPNTDGIHLQNSRDVLIRTANIACGDDCISIQTGCSNVYVHNVNCGPGHGISIGGLGRDNTKACVSNITVRDVNMHNTTNGVRIKTWQGGSGSVQGVLFSNIQVSEVQFPIIIDQFYCDKAKCKNQTTAVALSGITYERIRGTYTVKPVHFACSDSLPCTEVTLNAINLKPIQEKYHMYDPFCWRTFGELYSATVPPIECIEVGKPSNNRIQSNHDLC 517
MS +FR L +LL L W S+ TC ARRGKHWRH+R SLSKKK K+H S HH G+K KPK PSP PK + TP PP K + T++VLDFGAKGDG TDDTKAF++AWA+ACKVEASTIVVPS+YVF+VGP+SFSGPYC+ +IVFQLDGTIIAPTN KA+GSGL WI+FTKL GIT++G GVIDG+GS+WWQDS +DP+D+E++L++PLN T K++ P+PI+S LG +MPS KPTALRFYGSFNVTVTGITIQNSP CHLKFDNC+GVSVY +SVSSPGDS NTDGIHLQNS+DVLI N+ACGDDC+SIQTGCSNVY+HNVNCGPGHGISIGGLGRD TKACVSNITVRD+ MHNT NGVRIKTWQGGSGSVQGVLFSNIQVSEV+ PI+IDQFYCDK KCKNQT+AVALSGITYE+I+GTYTVKPVHFACSD+LPC +VTL I LKP+QE+YHMYDPFCW+TFGEL + TVPPI+C+++GKPS+NRIQS+HD C
Sbjct: 1 MSGLSFRRLAFMLLFAFLVWFSSTGTCHARRGKHWRHSRAASASLSKKKAKSHGSGSHHHGGSKSKPKAPSP---------PKQEVTPPPPEKK----GSETFNVLDFGAKGDGDTDDTKAFQSAWASACKVEASTIVVPSEYVFLVGPISFSGPYCEANIVFQLDGTIIAPTNAKAWGSGLLWWIEFTKLRGITIRGNGVIDGKGSVWWQDSPFDDPVDDEAKLIIPLNRTAKENSPIPINSKLGSKMPSTKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCMGVSVYEMSVSSPGDSVNTDGIHLQNSKDVLIHATNLACGDDCVSIQTGCSNVYIHNVNCGPGHGISIGGLGRDGTKACVSNITVRDIIMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVELPIVIDQFYCDKGKCKNQTSAVALSGITYEKIKGTYTVKPVHFACSDNLPCMDVTLTGIELKPLQERYHMYDPFCWQTFGELTTPTVPPIDCLQIGKPSSNRIQSDHDSC 505
BLAST of DCAR_026534 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A0D2RHA1 ((Uncharacterized protein {ECO:0000313|EMBL:KJB31214.1}))
HSP 1 Score: 776.548 bits (2004), Expect = 0.000e+0
Identity = 366/521 (70.25%), Postives = 438/521 (84.07%), Query Frame = 0
Match: A0A0D2RHA1 ((Uncharacterized protein {ECO:0000313|EMBL:KJB31214.1}))
HSP 1 Score: 776.548 bits (2004), Expect = 0.000e+0
Identity = 366/521 (70.25%), Postives = 438/521 (84.07%), Query Frame = 0
Query: 1 MSSSNFRSLTIILLILVLGWSSTFETCDARRGKHWRHNRNFPTSLSKKKGKNHVSSHHHSNGNKPKPKTPSPVAPAPPATKPKDDNTPAPPTKDHNYI---AASTYHVLDFGAKGDGKTDDTKAFEAAWAAACKVEASTIVVPSDYVFVVGPVSFSGPYCQNDIVFQLDGTIIAPTNFKAFGSGLFQWIQFTKLVGITVQGKGVIDGRGSIWWQDSSLEDPLDNESELVVPLNSTVKKHLPVPISSSL-GQMPSIKPTALRFYGSFNVTVTGITIQNSPLCHLKFDNCLGVSVYNISVSSPGDSPNTDGIHLQNSRDVLIRTANIACGDDCISIQTGCSNVYVHNVNCGPGHGISIGGLGRDNTKACVSNITVRDVNMHNTTNGVRIKTWQGGSGSVQGVLFSNIQVSEVQFPIIIDQFYCDKAKCKNQTTAVALSGITYERIRGTYTVKPVHFACSDSLPCTEVTLNAINLKPIQEKYHMYDPFCWRTFGELYSATVPPIECIEVGKPSNNRIQSNHDLC 517
M NFRSLT ++LI W S+ ETC ARRGKHWR +R + +LSKKKG +H ++H NG P A P+ KPK++ P+ P+ Y ++ ++VLDFGAKGDGK+DDTKAF+ WAAACKVEAST+VVP+++VF+VGP+SFSGPYCQ +IVFQLDGTIIAPT+ + +G GL QW++FTKL GI +QGKG++DGRGS WWQD+ EDP D+E +L++PLNSTV++ P+P+ + L G+MPSIKPTALRFYGSFNVTVTGITIQNSP CHLKFDNC+GV V++I+VSSPGDSPNTDGIHLQNS DVLI ++N+ACGDDC+SIQTGCSNVY+HNVNCGPGHGISIG LGRDNTKACVSNITVRD+ MHNT NGVRIKTWQGGSGSVQGVLFSNIQVSEVQ PI+IDQFYCDK KC N+T AVALSGITYE+IRGTYTVKPVHFACSDSLPC VTL+AI LKP+QE+YH+YDPFCW+TFGEL + TVPPI C+++GKP+NNR+QS+HD+C
Sbjct: 1 MGGVNFRSLTFMILIAFFVWCSSIETCIARRGKHWRQSR-YAAALSKKKGGSHGHRNYH-NGGSKPKPPPPQSHKATPSPKPKEEVPPSTPSPHGGYSYDQQSTVFNVLDFGAKGDGKSDDTKAFQDTWAAACKVEASTVVVPAEFVFLVGPISFSGPYCQANIVFQLDGTIIAPTDARPWGKGLLQWLEFTKLKGIAIQGKGILDGRGSGWWQDAPYEDPYDDERKLIIPLNSTVQERPPMPVRNELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCMGVVVHDITVSSPGDSPNTDGIHLQNSNDVLIHSSNLACGDDCVSIQTGCSNVYIHNVNCGPGHGISIGSLGRDNTKACVSNITVRDIVMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRKCSNETAAVALSGITYEKIRGTYTVKPVHFACSDSLPCIGVTLSAIELKPVQERYHLYDPFCWQTFGELTTPTVPPISCLQIGKPTNNRVQSDHDVC 519
BLAST of DCAR_026534 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6P3I2 ((Polygalacturonase {ECO:0000313|EMBL:PSR84836.1}))
HSP 1 Score: 776.163 bits (2003), Expect = 0.000e+0
Identity = 385/534 (72.10%), Postives = 453/534 (84.83%), Query Frame = 0
Match: A0A2R6P3I2 ((Polygalacturonase {ECO:0000313|EMBL:PSR84836.1}))
HSP 1 Score: 776.163 bits (2003), Expect = 0.000e+0
Identity = 385/534 (72.10%), Postives = 453/534 (84.83%), Query Frame = 0
Query: 1 MSSSNFRSLTIILLILVLGWSSTFETCDARRGKHWRHNRNFPTSLSKKKGKNHVSSHHHSNGNKPKPKTPSPVAPA----------------PPATKPKDDNTPAPPTKDHNYIAASTYHVLDFGAKGDGKTDDTKAFEAAWAAACKVEASTIVVPSDYVFVVGPVSFSGPYCQNDIVFQLDGTIIAPTNFKAFGSGLFQWIQFTKLVGITVQGKGVIDGRGSIWWQDSSLEDPLDNESELVVPLNSTVKKHLPVPISSSLG-QMPSIKPTALRFYGSFNVTVTGITIQNSPLCHLKFDNCLGVSVYNISVSSPGDSPNTDGIHLQNSRDVLIRTANIACGDDCISIQTGCSNVYVHNVNCGPGHGISIGGLGRDNTKACVSNITVRDVNMHNTTNGVRIKTWQGGSGSVQGVLFSNIQVSEVQFPIIIDQFYCDKAKCKNQTTAVALSGITYERIRGTYTVKPVHFACSDSLPCTEVTLNAINLKPIQEKYHMYDPFCWRTFGELYSATVPPIECIEVGKPSNNRIQSNHDLC 517
MS+ +FRSL +L+I L WSS +TC+AR+GKHWR NR SL KKKGKNH SSHHHSN KPK K PSP +P PP PK + PAPP KD N ++ +VLDFGAKGDG +DDTKAF+AAWA+ACKVEASTI+VPS+ F+VGP+SFSGPYCQ +IVFQLDGTIIAPT+ KA+GSGL QW++FTKL GITVQG G IDGRGS+WWQ S+ +DP+D+ES+L+VPLN+TV+++ P+PI+SSLG +MPSIKPTALRFYGSFNVTVTGITIQNSP CHLKFDNC+GVSVY++SVSSPGDSPNTDGIHLQNSRDVLIR+ N+ACGDDC+SIQTGC+NVY+HNVNCGPGHGISIG LG+D ++ACVSNITVRD+ M+NT NGVRIKTWQGGSGSVQGVLFSNIQVSEV+ PI+IDQ+YCDK+KCKNQT+AV+LSGITYE+IRGTYTVKPVH ACSD+LPC +VTL I LKP QE+YHMYD FCW+TFGEL + TVPPI+C+ VGKPS+NRIQ++HD C
Sbjct: 1 MSAFSFRSLAFMLIIGFLIWSSQIDTCNARKGKHWRQNRGASASLYKKKGKNHGSSHHHSNAGKPKHKVPSPKSPLPKPPSPPPLKAPSPALPP---PKQEIPPAPPKKD-NKPPSAVLNVLDFGAKGDGTSDDTKAFQAAWASACKVEASTIIVPSELTFLVGPISFSGPYCQPNIVFQLDGTIIAPTSSKAWGSGLLQWLEFTKLKGITVQGSGTIDGRGSVWWQQSAFDDPIDDESKLIVPLNNTVEENPPIPINSSLGWRMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVSVYSMSVSSPGDSPNTDGIHLQNSRDVLIRSTNLACGDDCVSIQTGCTNVYIHNVNCGPGHGISIGSLGKDASRACVSNITVRDIRMYNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVELPIVIDQYYCDKSKCKNQTSAVSLSGITYEKIRGTYTVKPVHLACSDNLPCVDVTLTDIELKPQQEQYHMYDAFCWQTFGELTTPTVPPIDCLHVGKPSSNRIQNDHDSC 530
BLAST of DCAR_026534 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2VY70 ((Uncharacterized protein {ECO:0000313|EMBL:TYI94259.1}))
HSP 1 Score: 775.393 bits (2001), Expect = 0.000e+0
Identity = 365/521 (70.06%), Postives = 438/521 (84.07%), Query Frame = 0
Match: A0A5D2VY70 ((Uncharacterized protein {ECO:0000313|EMBL:TYI94259.1}))
HSP 1 Score: 775.393 bits (2001), Expect = 0.000e+0
Identity = 365/521 (70.06%), Postives = 438/521 (84.07%), Query Frame = 0
Query: 1 MSSSNFRSLTIILLILVLGWSSTFETCDARRGKHWRHNRNFPTSLSKKKGKNHVSSHHHSNGNKPKPKTPSPVAPAPPATKPKDDNTPAPPTKDHNY---IAASTYHVLDFGAKGDGKTDDTKAFEAAWAAACKVEASTIVVPSDYVFVVGPVSFSGPYCQNDIVFQLDGTIIAPTNFKAFGSGLFQWIQFTKLVGITVQGKGVIDGRGSIWWQDSSLEDPLDNESELVVPLNSTVKKHLPVPISSSL-GQMPSIKPTALRFYGSFNVTVTGITIQNSPLCHLKFDNCLGVSVYNISVSSPGDSPNTDGIHLQNSRDVLIRTANIACGDDCISIQTGCSNVYVHNVNCGPGHGISIGGLGRDNTKACVSNITVRDVNMHNTTNGVRIKTWQGGSGSVQGVLFSNIQVSEVQFPIIIDQFYCDKAKCKNQTTAVALSGITYERIRGTYTVKPVHFACSDSLPCTEVTLNAINLKPIQEKYHMYDPFCWRTFGELYSATVPPIECIEVGKPSNNRIQSNHDLC 517
M NFRSLT ++LI W S+ ETC ARRGKHWR +R + +LSKKKG +H ++H NG P A P+ KPK++ P+ P+ Y ++ ++VLDFGAKGDGK+DDTKAF+ WAAACKVEAST+VVP+++VF+VGP+SFSGPYCQ +IVFQLDGTIIAPT+ + +G GL QW++FTKL GI +QGKG++DGRGS WWQD+ EDP D+E +L++PLNSTV++ P+P+ + L G+MPSIKPTALRFYGSFNVTVTGITIQNSP CHLKFDNC+GV V++I+VSSPGDSPNTDGIHLQNS DVLI ++++ACGDDC+SIQTGCSNVY+HNVNCGPGHGISIG LGRDNTKACVSNITVRD+ MHNT NGVRIKTWQGGSGSVQGVLFSNIQVSEVQ PI+IDQFYCDK KC N+T AVALSGITYE+IRGTYTVKPVHFACSDSLPC VTL+AI LKP+QE+YH+YDPFCW+TFGEL + TVPPI C+++GKP+NNR+QS+HD+C
Sbjct: 1 MGGVNFRSLTFMILIAFFVWCSSIETCIARRGKHWRQSR-YAAALSKKKGGSHGHRNYH-NGGSKPKPPPPQSHKATPSPKPKEEAPPSTPSPHGGYGYDQQSTVFNVLDFGAKGDGKSDDTKAFQDTWAAACKVEASTVVVPAEFVFLVGPISFSGPYCQANIVFQLDGTIIAPTDARPWGKGLLQWLEFTKLKGIAIQGKGILDGRGSGWWQDAPYEDPYDDERKLIIPLNSTVQERPPMPVRNELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCMGVVVHDITVSSPGDSPNTDGIHLQNSNDVLIHSSDLACGDDCVSIQTGCSNVYIHNVNCGPGHGISIGSLGRDNTKACVSNITVRDIVMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRKCSNETAAVALSGITYEKIRGTYTVKPVHFACSDSLPCIGVTLSAIELKPVQERYHLYDPFCWQTFGELTTPTVPPISCLQIGKPTNNRVQSDHDVC 519
BLAST of DCAR_026534 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6QR49 ((Polygalacturonase {ECO:0000313|EMBL:PSS13593.1}))
HSP 1 Score: 775.007 bits (2000), Expect = 0.000e+0
Identity = 375/532 (70.49%), Postives = 443/532 (83.27%), Query Frame = 0
Match: A0A2R6QR49 ((Polygalacturonase {ECO:0000313|EMBL:PSS13593.1}))
HSP 1 Score: 775.007 bits (2000), Expect = 0.000e+0
Identity = 375/532 (70.49%), Postives = 443/532 (83.27%), Query Frame = 0
Query: 1 MSSSNFRSLTIILLILVLGWSSTFETCDARRGKHWRHNRNFPTSLSKKKGKNHVSSHHHSNGNKPKPKTPSPVAPAPPATKPKDDNTPAPPTKDHNYIA--------------ASTYHVLDFGAKGDGKTDDTKAFEAAWAAACKVEASTIVVPSDYVFVVGPVSFSGPYCQNDIVFQLDGTIIAPTNFKAFGSGLFQWIQFTKLVGITVQGKGVIDGRGSIWWQDSSLEDPLDNESELVVPLNSTVKKHLPVPISSSLG-QMPSIKPTALRFYGSFNVTVTGITIQNSPLCHLKFDNCLGVSVYNISVSSPGDSPNTDGIHLQNSRDVLIRTANIACGDDCISIQTGCSNVYVHNVNCGPGHGISIGGLGRDNTKACVSNITVRDVNMHNTTNGVRIKTWQGGSGSVQGVLFSNIQVSEVQFPIIIDQFYCDKAKCKNQTTAVALSGITYERIRGTYTVKPVHFACSDSLPCTEVTLNAINLKPIQEKYHMYDPFCWRTFGELYSATVPPIECIEVGKPSNNRIQSNHDLC 517
M + +FRSLT +LLI L WSS +TC+ARRGKHWR NR SL KKKGKNH SHHHSN +KPK K PSP +P P P ++ +VLDFGAKGDG +DDTKAF+AAWA+ACKVEASTI+VP + F+VGP+SFSGPYCQ +IVFQL+GTIIAPT+ KA+GSGL QW++FTKL GIT+QG G IDGRGS+WWQ S+ +DP+D+ES+L+VPLN+TV+++ P+PI+SSLG +MPSIKPTALRFYGSFNVTVTGITIQNSP CHLKFDNC+GVSVYN+SVSSPGDSPNTDGIHLQNSRDVLIR+ N+ACGDDC+SIQTGC+NVY+HNVNCGPGHGISIG LG+D ++ACVSNITVRD++M+NT NGVRIKTWQGGSGSVQGVLFSNIQVSEV+ PI+IDQ+YCDK++CKNQT+AVALSGITYE+IRGTYTVKPVH ACSD+LPC +VTL I LKP QE+YHMYD FCW+TFGEL + TVPPI+C+ VGKPS+NRIQ++HD C
Sbjct: 1 MRAFSFRSLTFMLLIGFLIWSSQIDTCNARRGKHWRQNRGVSASLYKKKGKNHGGSHHHSNASKPKHKVPSPKSPLPKPLPSPPPLPKTPFPAPPPPKQEIPPPPPKKDNSPPSAVLNVLDFGAKGDGTSDDTKAFQAAWASACKVEASTIMVPPELTFLVGPISFSGPYCQPNIVFQLEGTIIAPTSSKAWGSGLLQWLEFTKLRGITIQGSGTIDGRGSVWWQQSTYDDPIDDESKLIVPLNNTVEENPPIPINSSLGSRMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVSVYNMSVSSPGDSPNTDGIHLQNSRDVLIRSTNLACGDDCVSIQTGCTNVYIHNVNCGPGHGISIGSLGKDASRACVSNITVRDISMYNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVELPIVIDQYYCDKSECKNQTSAVALSGITYEKIRGTYTVKPVHLACSDNLPCVDVTLTDIELKPQQEQYHMYDAFCWQTFGELTTPTVPPIDCLHVGKPSSNRIQNDHDSC 532
BLAST of DCAR_026534 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5D2DGI9 ((Uncharacterized protein {ECO:0000313|EMBL:TYG80240.1}))
HSP 1 Score: 774.622 bits (1999), Expect = 0.000e+0
Identity = 365/521 (70.06%), Postives = 438/521 (84.07%), Query Frame = 0
Match: A0A5D2DGI9 ((Uncharacterized protein {ECO:0000313|EMBL:TYG80240.1}))
HSP 1 Score: 774.622 bits (1999), Expect = 0.000e+0
Identity = 365/521 (70.06%), Postives = 438/521 (84.07%), Query Frame = 0
Query: 1 MSSSNFRSLTIILLILVLGWSSTFETCDARRGKHWRHNRNFPTSLSKKKGKNHVSSHHHSNGNKPKPKTPSPVAPAPPATKPKDDNTPAPPTKDHNY---IAASTYHVLDFGAKGDGKTDDTKAFEAAWAAACKVEASTIVVPSDYVFVVGPVSFSGPYCQNDIVFQLDGTIIAPTNFKAFGSGLFQWIQFTKLVGITVQGKGVIDGRGSIWWQDSSLEDPLDNESELVVPLNSTVKKHLPVPISSSL-GQMPSIKPTALRFYGSFNVTVTGITIQNSPLCHLKFDNCLGVSVYNISVSSPGDSPNTDGIHLQNSRDVLIRTANIACGDDCISIQTGCSNVYVHNVNCGPGHGISIGGLGRDNTKACVSNITVRDVNMHNTTNGVRIKTWQGGSGSVQGVLFSNIQVSEVQFPIIIDQFYCDKAKCKNQTTAVALSGITYERIRGTYTVKPVHFACSDSLPCTEVTLNAINLKPIQEKYHMYDPFCWRTFGELYSATVPPIECIEVGKPSNNRIQSNHDLC 517
M NFRSLT ++LI W S+ ETC ARRGKHWR +R + +LSKKKG +H ++H NG P A P+ KPK++ P+ P+ Y ++ ++VLDFGAKGDGK+DDTKAF+ WAAACKVEAST+VVP+++VF+VGP+SFSGPYCQ +IVFQLDGTIIAPT+ + +G GL QW++FTKL GI +QGKG++DGRGS WWQD+ EDP D+E +L++PLNSTV++ P+P+ + L G+MPSIKPTALRFYGSFNVTVTGITIQNSP CHLKFDNC+GV V++I+VSSPGDSPNTDGIHLQNS DVLI ++++ACGDDC+SIQTGCSNVY+HNVNCGPGHGISIG LGRDNTKACVSNITVRD+ MHNT NGVRIKTWQGGSGSVQGVLFSNIQVSEVQ PI+IDQFYCDK KC N+T AVALSGITYE+IRGTYTVKPVHFACSDSLPC VTL+AI LKP+QE+YH+YDPFCW+TFGEL + TVPPI C+++GKP+NNR+QS+HD+C
Sbjct: 1 MGGVNFRSLTFMILIAFFVWCSSIETCIARRGKHWRQSR-YAAALSKKKGGSHGHRNYH-NGGSKPKPPPPQSHKATPSPKPKEEVPPSTPSPHGGYGYDQQSTVFNVLDFGAKGDGKSDDTKAFQDTWAAACKVEASTVVVPAEFVFLVGPISFSGPYCQANIVFQLDGTIIAPTDARPWGKGLLQWLEFTKLKGIAIQGKGILDGRGSGWWQDAPYEDPYDDERKLIIPLNSTVQERPPMPVRNELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCMGVVVHDITVSSPGDSPNTDGIHLQNSNDVLIHSSDLACGDDCVSIQTGCSNVYIHNVNCGPGHGISIGSLGRDNTKACVSNITVRDIVMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRKCSNETAAVALSGITYEKIRGTYTVKPVHFACSDSLPCIGVTLSAIELKPVQERYHLYDPFCWQTFGELTTPTVPPISCLQIGKPTNNRVQSDHDVC 519
| Match Name | Stats | Description |
|---|---|---|
| A0A4U5MBA2 | E-Value: 0.000e+0, PID: 71.73 | (Polygalacturonase {ECO:0000313|EMBL:TKR66232.1})[more] |
| F6HHV8 | E-Value: 0.000e+0, PID: 73.55 | (Uncharacterized protein {ECO:0000313|EMBL:CCB5179... [more] |
| A0A7J7D4U6 | E-Value: 0.000e+0, PID: 70.17 | (Pectin lyase-like superfamily protein {ECO:000031... [more] |
| A0A5B7BSK2 | E-Value: 0.000e+0, PID: 75.87 | (Uncharacterized protein {ECO:0000313|EMBL:MPA7147... [more] |
| A0A438E6L8 | E-Value: 0.000e+0, PID: 73.36 | (Polygalacturonase {ECO:0000313|EMBL:RVW43323.1})[more] |
| A0A0D2RHA1 | E-Value: 0.000e+0, PID: 70.25 | (Uncharacterized protein {ECO:0000313|EMBL:KJB3121... [more] |
| A0A2R6P3I2 | E-Value: 0.000e+0, PID: 72.10 | (Polygalacturonase {ECO:0000313|EMBL:PSR84836.1})[more] |
| A0A5D2VY70 | E-Value: 0.000e+0, PID: 70.06 | (Uncharacterized protein {ECO:0000313|EMBL:TYI9425... [more] |
| A0A2R6QR49 | E-Value: 0.000e+0, PID: 70.49 | (Polygalacturonase {ECO:0000313|EMBL:PSS13593.1})[more] |
| A0A5D2DGI9 | E-Value: 0.000e+0, PID: 70.06 | (Uncharacterized protein {ECO:0000313|EMBL:TYG8024... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |