MATSMKFNKRCTVRSTSFPSTLHPSACKIEEGLTRIRSWEAEASDVLTAD
TVCDGLCRLGELYKYTDEFLNLPLTQQALSHHQNEKCVNELMDKSVRLLD
ICGNTRDVMSEIKVHARELLSALRRKKGDSSAEFAAFRKAINKDSKKLTA
SLKQVDTKSSVLEIFDQDQHLGAVIRSLKEVTAASVSVFQSVLLFLSTPI
LKPKATTKWLQVSKLMHKGAVSSEDQQHDVNEVDRVKTLESDVEGIENGL
ESMFRHFIRTRASLLNIVSQ*
| Relationships |
|---|
| The polypeptide, DCAR_027628, derives from mRNA, DCAR_027628. |
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Match: F6GZJ1 ((Uncharacterized protein {ECO:0000313|EMBL:CCB45377.1}))
HSP 1 Score: 266.159 bits (679), Expect = 1.800e-86
Identity = 140/290 (48.28%), Postives = 189/290 (65.17%), Query Frame = 0
Query: 10 RCTVRSTSFPSTLHPSACKIEEGLTRIRSWEAEASDVLTADTVCDGLCRLGELYKYTDEFLNLPLTQQALSHHQNEKCVNELMDKSVRLLDICGNTRDVMSEIKVHARELLSALRRKKGD-----SSAEFAAFRKAINKDSKKLTASLKQVDTKSSVLEIFDQDQHLGAVIRSLKEVTAASVSVFQSVLLFLSTPILKPKATTKWLQVSKLMHKGAVSSEDQQHDVNEVDRVK------------------------TLESDVEGIENGLESMFRHFIRTRASLLNIVSQ 270
RC VRS S PS HP+ KI+E L ++R+ EA ++ L +T+C+GL L ELYK DE L LP TQQALSHHQ+EK VN+L+D VR+LD+CG+ RDV+++ K R+L SALRR+KGD S + + RK +NKDSKKL A++K++++ + +F+QD L VIR L EV A S+S+FQS++LFLSTP+LK K +KW VSK MHKG VS ED+ +V E++ + LE +E ++NGLE MFRH I+TRASLLNI+S
Sbjct: 4 RCHVRSISLPSRSHPTTLKIQEELNKLRTLEASSTSTL--ETICNGLSGLQELYKCLDELLGLPSTQQALSHHQHEKWVNDLLDGPVRILDVCGSVRDVIAQFKEKIRDLQSALRRRKGDLCVESSISNYICSRKKMNKDSKKLLAAMKKMNSNTEASPLFNQDHQLSTVIRVLTEVNAMSISIFQSLVLFLSTPVLKSKP-SKWSLVSKYMHKGVVSCEDKHDNVKELENIDFAVSALSNGRADLEKMQITHKGLGALEVSIESLDNGLECMFRHLIKTRASLLNIISH 290
Match: A0A438EV35 ((Uncharacterized protein {ECO:0000313|EMBL:RVW51575.1}))
HSP 1 Score: 266.159 bits (679), Expect = 1.800e-86
Identity = 140/290 (48.28%), Postives = 189/290 (65.17%), Query Frame = 0
Query: 10 RCTVRSTSFPSTLHPSACKIEEGLTRIRSWEAEASDVLTADTVCDGLCRLGELYKYTDEFLNLPLTQQALSHHQNEKCVNELMDKSVRLLDICGNTRDVMSEIKVHARELLSALRRKKGD-----SSAEFAAFRKAINKDSKKLTASLKQVDTKSSVLEIFDQDQHLGAVIRSLKEVTAASVSVFQSVLLFLSTPILKPKATTKWLQVSKLMHKGAVSSEDQQHDVNEVDRVK------------------------TLESDVEGIENGLESMFRHFIRTRASLLNIVSQ 270
RC VRS S PS HP+ KI+E L ++R+ EA ++ L +T+C+GL L ELYK DE L LP TQQALSHHQ+EK VN+L+D VR+LD+CG+ RDV+++ K R+L SALRR+KGD S + + RK +NKDSKKL A++K++++ + +F+QD L VIR L EV A S+S+FQS++LFLSTP+LK K +KW VSK MHKG VS ED+ +V E++ + LE +E ++NGLE MFRH I+TRASLLNI+S
Sbjct: 4 RCHVRSISLPSRSHPTTLKIQEELNKLRTLEASSTSTL--ETICNGLSGLQELYKCLDELLGLPSTQQALSHHQHEKWVNDLLDGPVRILDVCGSVRDVIAQFKEKIRDLQSALRRRKGDLCVESSISNYICSRKKMNKDSKKLLAAMKKMNSNTEASPLFNQDHQLSTVIRVLTEVNAMSISIFQSLVLFLSTPVLKSKP-SKWSLVSKYMHKGVVSCEDKHDNVKELENIDFAVSALSNGRADLEKMQITHKGLGALEVSIESLDNGLECMFRHLIKTRASLLNIISH 290
Match: A0A7J7E351 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5753092.1}))
HSP 1 Score: 262.692 bits (670), Expect = 3.566e-85
Identity = 136/286 (47.55%), Postives = 189/286 (66.08%), Query Frame = 0
Query: 10 RCTVRSTSFPSTLHPSACKIEEGLTRIRSWEAEASDVLTADTVCDGLCRLGELYKYTDEFLNLPLTQQALSHHQNEKCVNELMDKSVRLLDICGNTRDVMSEIKVHARELLSALRRKKGDSSAE-----FAAFRKAINKDSKKLTASLKQVDTKSSVLEIFDQDQHLGAVIRSLKEVTAASVSVFQSVLLFLSTPILKPKATTKWLQVSKLMHKGAVSSEDQQHDVNEVD--------------------RVKTLESDVEGIENGLESMFRHFIRTRASLLNIVSQ 270
R VRS S PS HPS +IEE L + ++ +A + + ++C GL L ELY+ D+ LN+ TQQ LSH+QNEKC++EL+D SVRLLD+C N RD++ +IK H + L SALRR+KGDSS E + +FRK + KDSK+L A+LKQ++ K I DQD HL AVIR L+EV S+S+FQS+LLFLS + KP+ KW VSKLMHKG ++ E++Q +NE++ R++ LE+ ++G+ENGLES+FR I+ RA++LNI+SQ
Sbjct: 5 RYHVRSISLPSRSHPSTLRIEEALNKFKTLDAFSRS--STGSICTGLSGLEELYRCMDDLLNMGSTQQVLSHNQNEKCIDELLDGSVRLLDVCTNIRDMLLQIKEHVQALQSALRRRKGDSSTETSISTYISFRKRMKKDSKRLVAALKQMENKLGASPISDQDHHLSAVIRVLREVNVTSISIFQSLLLFLSMSVSKPRQ-GKWSLVSKLMHKGMIACEEKQESLNELEIVDAALCEGLNIEKMQNTNKRLEALETSIQGLENGLESVFRRLIKARAAVLNIISQ 287
Match: A0A5B7BH63 ((Uncharacterized protein {ECO:0000313|EMBL:MPA67061.1}) (Fragment))
HSP 1 Score: 260.766 bits (665), Expect = 2.294e-84
Identity = 142/294 (48.30%), Postives = 191/294 (64.97%), Query Frame = 0
Query: 2 ATSMKFNKRCTVRSTSFPSTLHPSACKIEEGLTRIRSWEAEASDVLTADTVCDGLCRLGELYKYTDEFLNLPLTQQALSHHQNEKCVNELMDKSVRLLDICGNTRDVMSEIKVHARELLSALRRKKGD-----SSAEFAAFRKAINKDSKKLTASLKQVDTKSSVLEIFDQDQHLGAVIRSLKEVTAASVSVFQSVLLFLSTPILKPKATTKWLQVSKLMHKGAVSSEDQQHDVNEVDRV--------------------KTLESDVEGIENGLESMFRHFIRTRASLLNIVSQ 270
A+S K N+ +RS S P HP+ IEE L ++ WEA ++ TA ++C GL L ELYK D+ NLPLTQQALS HQ+E+ V+EL+D SVR LDICG TRDVMS++K R+L SALRR+KGD S A++ FRK KD+K+L ASLKQ++ + + D H+ +VI+ L+EV A S+S+FQS+LLFLS PI KP+ T+WL VSKL+HKGAV+ +DQ + NE++ V + L++ +E +ENGLE MFR I+ RASLLN+VS
Sbjct: 1 ASSSKSNRNYHIRSISLPCRSHPTTLTIEEKLNELKIWEASSTP--TAKSICKGLSGLEELYKCVDDLYNLPLTQQALSQHQHERWVDELLDGSVRDLDICGITRDVMSQVKERVRDLQSALRRRKGDLSIESSIAKYTCFRKKTKKDAKRLIASLKQMEGLP--VPPLNLDHHVTSVIKVLREVGAVSISIFQSLLLFLSVPISKPRP-TRWLLVSKLLHKGAVACQDQHENANELESVDVALCGSGCSSEVERMQNSLEALDASIEIVENGLECMFRRLIKARASLLNLVSH 289
Match: A0A7J7CPG0 ((Uncharacterized protein {ECO:0000313|EMBL:KAF5735898.1}))
HSP 1 Score: 258.455 bits (659), Expect = 1.431e-83
Identity = 134/286 (46.85%), Postives = 189/286 (66.08%), Query Frame = 0
Query: 10 RCTVRSTSFPSTLHPSACKIEEGLTRIRSWEAEASDVLTADTVCDGLCRLGELYKYTDEFLNLPLTQQALSHHQNEKCVNELMDKSVRLLDICGNTRDVMSEIKVHARELLSALRRKKGDSSAE-----FAAFRKAINKDSKKLTASLKQVDTKSSVLEIFDQDQHLGAVIRSLKEVTAASVSVFQSVLLFLSTPILKPKATTKWLQVSKLMHKGAVSSEDQQHDVNEVD--------------------RVKTLESDVEGIENGLESMFRHFIRTRASLLNIVSQ 270
R VRS S PS HPS +IE+ L + ++ +A + + ++C GL L ELY+ D+ LN+ TQQ LSH+QNEKC+ EL+D SVRLLD+C T+D++ +IK H + L SALRR+KGDSS E + +FRK + KDSK+L A+LKQ++ K I DQD HL AVIR L+EV S+S+FQS++LFLS P+ KP+ KW VSKLMHKG ++ E++Q ++NE++ R+K LE+ ++ +ENGLE++FR I+ RAS+LNI+SQ
Sbjct: 5 RYHVRSISLPSRSHPSTLRIEQELNKFKTLDALSRS--STGSICTGLSGLEELYQRMDDLLNMGSTQQVLSHNQNEKCIEELLDGSVRLLDVCEITKDMLLQIKEHVQALQSALRRRKGDSSTETTISTYISFRKKMKKDSKRLIAALKQMENKLGASPISDQDHHLCAVIRVLREVNMTSISIFQSLMLFLSMPVSKPRQ-GKWSLVSKLMHKGVIACEEKQENLNELEIVDAAMCEGLNIEKTQITNKRLKALETSIQELENGLETLFRRLIKARASVLNIISQ 287
Match: A0A438EV58 ((Uncharacterized protein {ECO:0000313|EMBL:RVW51573.1}))
HSP 1 Score: 255.758 bits (652), Expect = 1.521e-82
Identity = 139/287 (48.43%), Postives = 188/287 (65.51%), Query Frame = 0
Query: 10 RCTVRSTSFPSTLHPSACKIEEGLTRIRSWEAEASDVLTADTVCDGLCRLGELYKYTDEFLNLPLTQQALSHHQNEKCVNELMDKSVRLLDICGNTRDVMSEIKVHARELLSALRRKKGD-----SSAEFAAFRKAINKDSKKLTASLKQVDTKSSVLEIFDQDQHLGAVIRSLKEVTAASVSVFQSVLLFLSTPILKPKATTKWLQVSKLMHKGAVSSEDQQHDVNEVD---------------------RVKTLESDVEGIENGLESMFRHFIRTRASLLNIVSQ 270
RC VRS S P+ HP+ KI++ L ++RSWE + + ++T+C GL L EL K DE L+LP +QQALSHH NEK V+EL+D SVRLLDICG+TRD +S++K +AR+L SALRR+KGD S + RK +NKD+KKL A++K++D ++ + DQ L AVI L EV A S+S+FQ++LLFLS P+ KPK T+W VSK +HKG V E+ + ++ VD ++TLE+ +EG+ENGLE MFR I+TRASLLNIVS
Sbjct: 4 RCHVRSISLPTRSHPTILKIQKELNKLRSWETSSRSM--SETICTGLSGLEELQKSLDELLSLPSSQQALSHHLNEKWVDELLDGSVRLLDICGSTRDAISQLKQNARDLQSALRRRKGDVCIESSIGNYICSRKKMNKDAKKLLAAMKKMDKETRASPLLDQHHQLSAVIEVLGEVNAISISIFQALLLFLSAPVSKPKP-TRWSLVSKFVHKGIVKHENIK-ELESVDFILSAISGGRADLEKMQIAHKELETLEASIEGLENGLECMFRRLIKTRASLLNIVSH 286
Match: A0A6P5SZI1 ((uncharacterized protein LOC110761391 {ECO:0000313|RefSeq:XP_021819547.1}))
HSP 1 Score: 254.988 bits (650), Expect = 4.288e-82
Identity = 146/293 (49.83%), Postives = 193/293 (65.87%), Query Frame = 0
Query: 13 VRSTSFPSTLHPSACKIEEGLTRIRSWEAEASDVLTADTVCDGLCRLGELYKYTDEFLNLPLTQQALSHHQNEKCVNELMDKSVRLLDICGNTRDVMSEIKVHARELLSALRRKKGDSS-----AEFAAFRKAINKDSKKLTASLKQVDTKSSVLEIFDQDQHLGAVIRSLKEVTAASVSVFQSVLLFLSTPILKPKATTKWLQVSKLMHKGAVSSEDQQHDVNEVD------------------------------RVKTLESDVEGIENGLESMFRHFIRTRASLLNIVSQ 270
VRS S PS HP+ ++EE L+ +++WEA +S TAD++C LC L ELY+ D+ L++ TQQ LS HQ EKC++EL+D SVRLLDICG T D +S+IK HAR L SALRR+KGDSS A + FRK + KD+KKL SLKQVD K V ++ +QDQHL AVIR L E + ++S+FQS+L+FLS P+ +PK + KW VSK MHKG ++ E Q+ D+NE+D R++ LE +EG+ENGLES+FR I+TRASLLNI+SQ
Sbjct: 7 VRSISLPSRSHPTTLRVEEELSWLQAWEASSSAS-TADSICKALCGLEELYECVDDLLHMASTQQLLSQHQQEKCMDELLDGSVRLLDICGITNDAISQIKEHARALQSALRRRKGDSSIETSIANYTCFRKKMKKDAKKLITSLKQVDGKIGVSQMVEQDQHLSAVIRVLSEACSKNMSIFQSLLVFLSVPVSQPK-SNKWSLVSKFMHKGVIACEGQKEDINEMDGVDAALNTLCKSSSAPIECADVEKIQSAQKRLEALEVTIEGLENGLESVFRRLIKTRASLLNIISQ 297
Match: A0A6J5VKJ6 ((Uncharacterized protein {ECO:0000313|EMBL:CAB4287905.1}))
HSP 1 Score: 254.603 bits (649), Expect = 7.074e-82
Identity = 144/293 (49.15%), Postives = 195/293 (66.55%), Query Frame = 0
Query: 13 VRSTSFPSTLHPSACKIEEGLTRIRSWEAEASDVLTADTVCDGLCRLGELYKYTDEFLNLPLTQQALSHHQNEKCVNELMDKSVRLLDICGNTRDVMSEIKVHARELLSALRRKKGDSS-----AEFAAFRKAINKDSKKLTASLKQVDTKSSVLEIFDQDQHLGAVIRSLKEVTAASVSVFQSVLLFLSTPILKPKATTKWLQVSKLMHKGAVSSEDQQHDVNEVD------------------------------RVKTLESDVEGIENGLESMFRHFIRTRASLLNIVSQ 270
VRS S PS HP+ ++EE L+R+++WEA +S T+D++C LC L ELY+ D+ L++ TQQ LS HQ EK ++EL+D SVRLLDICG T+D +S+IK HAR L SALRR+KGDSS A + FRK + KD+KKL SLKQVD+K ++ +QDQHL AVIR L+E + ++S+FQS+L+FL+ P+ KPK + KW VSK MHKG ++ E Q+ D+NE+D R++ LE +EG+ENGLES+FR I+TRASLLNI+SQ
Sbjct: 7 VRSISLPSRSHPTTLRVEEELSRLQAWEASSSAS-TSDSICRALCGLEELYECLDDLLHMASTQQLLSQHQQEKYMDELLDGSVRLLDICGITKDAISQIKEHARALQSALRRRKGDSSIETSIANYTCFRKKMKKDAKKLITSLKQVDSKIGASQMVEQDQHLSAVIRVLREACSKNMSIFQSLLVFLAVPVSKPK-SNKWSLVSKFMHKGVIACEGQKEDINEMDGVDAALNTLRKSSTAPIECTDVEKIQSAQKRLEALEVTIEGLENGLESVFRRLIKTRASLLNIISQ 297
Match: F6HRY9 ((Uncharacterized protein {ECO:0000313|EMBL:CCB57448.1}))
HSP 1 Score: 253.447 bits (646), Expect = 1.444e-81
Identity = 134/290 (46.21%), Postives = 185/290 (63.79%), Query Frame = 0
Query: 10 RCTVRSTSFPSTLHPSACKIEEGLTRIRSWEAEASDVLTADTVCDGLCRLGELYKYTDEFLNLPLTQQALSHHQNEKCVNELMDKSVRLLDICGNTRDVMSEIKVHARELLSALRRKKGDSSAE-----FAAFRKAINKDSKKLTASLKQVDTKSSVLEIFDQDQHLGAVIRSLKEVTAASVSVFQSVLLFLSTPILKPKATTKWLQVSKLMHKGAVSSEDQQHDVNEVDRV------------------------KTLESDVEGIENGLESMFRHFIRTRASLLNIVSQ 270
RC VRS S PS H + KI+E L +++ WEA ++ L T+C+GL + ELYK DE L+L TQQA+SHHQ+EK V EL+D SV LLD+CG TRDV+SE K + +L SALRR+KGD E + RK +NKD+KKL A++K++D K+ + DQD L VI+ L++V A S+S+FQS++LFLS+P+LK K ++W VSKLM KG VS E++ +V E++ + LE ++G +NGLE MFRH I+TRAS+LNI+S
Sbjct: 4 RCHVRSISLPSRSHSTTLKIQEELNKLKKWEASSTSTL--GTICNGLSGMEELYKCLDELLSLQSTQQAISHHQHEKWVEELLDGSVSLLDVCGTTRDVISEFKENVGDLQSALRRRKGDVCIESSINNYICSRKKMNKDAKKLLAAIKKMDNKAGASPLLDQDHQLSTVIKVLRDVNAMSISIFQSLVLFLSSPVLKSKP-SRWSLVSKLMQKGVVSCEEKHENVKELENIDFALSAISGERADLEKMQIAQKGLGALEVSIKGFDNGLECMFRHLIKTRASILNIISH 290
Match: A0A5J5C0W1 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8547567.1}))
HSP 1 Score: 264.618 bits (675), Expect = 2.027e-81
Identity = 142/282 (50.35%), Postives = 186/282 (65.96%), Query Frame = 0
Query: 19 PSTLHPSACKIEEGLTRIRSWEAEASDVLTADTVCDGLCRLGELYKYTDEFLNLPLTQQALSHHQNEKCVNELMDKSVRLLDICGNTRDVMSEIKVHARELLSALRRKKGD-----SSAEFAAFRKAINKDSKKLTASLKQVDTKSSVLEIFDQDQHLGAVIRSLKEVTAASVSVFQSVLLFLSTPILKPKATTKWLQVSKLMHKGAVSSEDQQHDVNEVDRV-------------------------KTLESDVEGIENGLESMFRHFIRTRASLLNIVSQ 270
P+ HPS IEE L ++++WEA ++ + A+T+C L L ELYK TD+ NLPLTQQALS HQ+EK V+ L+D S+RLLDICG TRDV+S+IK H R+L SALRR+KGD S A++ FRK + KD+K+L A+LKQ+D K L + D D H+ +VI L EV A S+S FQ++LLFLS P+ KP+ T+WL VSKL+HKGAV+ EDQ ++NE++ V + LE +E IEN LE MFRH I+ RASLLNIVS
Sbjct: 399 PTRSHPSTIAIEEKLNKLKTWEASSTTM--AETICKSLSGLEELYKCTDDLYNLPLTQQALSQHQHEKWVDVLLDGSMRLLDICGITRDVVSQIKEHVRDLQSALRRRKGDLSIESSIAKYTCFRKKMKKDAKQLIAALKQMDNKIEALPLLDLDHHVSSVIGVLMEVRAMSISTFQTLLLFLSVPVSKPRP-TRWLLVSKLLHKGAVACEDQCANLNELESVDIVLQALCRCGSSEGDKMQIAQNSLEALEGSIEVIENSLECMFRHLIKARASLLNIVSH 677
HSP 2 Score: 220.32 bits (560), Expect = 1.480e-64
Identity = 123/239 (51.46%), Postives = 163/239 (68.20%), Query Frame = 0
Query: 3 TSMKFNKRCTVRSTSFPSTLHPSACKIEEGLTRIRSWEAEASDVLTADTVCDGLCRLGELYKYTDEFLNLPLTQQALSHHQNEKCVNELMDKSVRLLDICGNTRDVMSEIKVHARELLSALRRKKGD-----SSAEFAAFRKAINKDSKKLTASLKQVDTKSSVLEIFDQDQHLGAVIRSLKEVTAASVSVFQSVLLFLSTPILKPKATTKWLQVSKLMHKGAVSSEDQQHDVNEVDRV 236
T+ K + +RS S HPS IEE L + ++WEA ++ + A+T+C GL L ELYK D+ N L QQA S HQ+EK VNEL+D SV+LLDICG TRDV+S+IK H R+L SALRR+KGD S A++ FRK I KD+KKL A+LKQ+D K L + + D H +VI+ L EV+A S+S FQS+LLFLS PIL+P+ T+WL VSKL+HKG V+ ED ++NE++ V
Sbjct: 2 TTSKSKSQYHIRSISLSCRSHPSTIAIEEKLNKFKTWEASSTTM--AETICKGLSGLEELYKCVDDLYNFSLIQQAPSQHQHEKWVNELLDGSVKLLDICGITRDVVSQIKEHVRDLQSALRRRKGDLSIESSIAKYTCFRKKIKKDAKKLIAALKQMDNKIEALPLLNLDHHAFSVIKVLTEVSAMSISAFQSLLLFLSVPILRPRP-TRWLLVSKLLHKGEVACEDHHANLNELESV 237
HSP 3 Score: 70.0922 bits (170), Expect = 5.227e-11
Identity = 46/122 (37.70%), Postives = 73/122 (59.84%), Query Frame = 0
Query: 91 LMDKSVRLLDICGNTRDVMSEIKVHA-RELLSALRRKKGD-----SSAEFAAFRKAINKDSKKLTASLKQVDTKSSVLEIFDQDQHLGAVIRSLKEVTAASVSVFQSVLLFLSTPILKPKAT 206
L++K + L +C + + + + +++A R +KGD S A + FRK + KD+KKL A+LKQ+D K L + D D + +VI+ L EV A S+S F+++LLFLS P+ KP+ T
Sbjct: 279 LLNKKSKYLALCIHPEEYGQAYHLPSCNNVMNAFRTRKGDLSIESSIARYTCFRKKMKKDAKKLIAALKQMDNKIEALLLLDLDHRVSSVIKVLIEVGAMSISTFETLLLFLSMPVSKPRPT 400
| Match Name | Stats | Description |
|---|---|---|
| F6GZJ1 | E-Value: 1.800e-86, PID: 48.28 | (Uncharacterized protein {ECO:0000313|EMBL:CCB4537... [more] |
| A0A438EV35 | E-Value: 1.800e-86, PID: 48.28 | (Uncharacterized protein {ECO:0000313|EMBL:RVW5157... [more] |
| A0A7J7E351 | E-Value: 3.566e-85, PID: 47.55 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5753... [more] |
| A0A5B7BH63 | E-Value: 2.294e-84, PID: 48.30 | (Uncharacterized protein {ECO:0000313|EMBL:MPA6706... [more] |
| A0A7J7CPG0 | E-Value: 1.431e-83, PID: 46.85 | (Uncharacterized protein {ECO:0000313|EMBL:KAF5735... [more] |
| A0A438EV58 | E-Value: 1.521e-82, PID: 48.43 | (Uncharacterized protein {ECO:0000313|EMBL:RVW5157... [more] |
| A0A6P5SZI1 | E-Value: 4.288e-82, PID: 49.83 | (uncharacterized protein LOC110761391 {ECO:0000313... [more] |
| A0A6J5VKJ6 | E-Value: 7.074e-82, PID: 49.15 | (Uncharacterized protein {ECO:0000313|EMBL:CAB4287... [more] |
| F6HRY9 | E-Value: 1.444e-81, PID: 46.21 | (Uncharacterized protein {ECO:0000313|EMBL:CCB5744... [more] |
| A0A5J5C0W1 | E-Value: 2.027e-81, PID: 50.35 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8547... [more] |
Pages
back to top| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |