Resource Type:
Polypeptide
Name:
DCAR_031156
Identifier:
DCAR_031156.mRNA-protein
Sequence:
MKFMKLGSRPDTFCTNESVRSISSEVSCDLLIQVKGTRYFLHKFPLLTKC
LRLQKLCSDSPESSPCQIVQLPEFPGGVEAFELCAKFCYGITITLSAYNI
VSARLAAEYLQMTEDVEKGNLIYKLEVFLNSCVLHGWKDSVVTLQSTKAY
PSWAEDLSITSRCIEAIALKVLSQPSKVPQARRSRDNTQSCNVAESQPSK
HVTKGWWADDVADLGIDLYWRTMIAIKSKRKVPSSLIGDALRIYASRRLP
NISKHLDADKQVETDLKSDANEVSSKHRFLLESIISLLPVDRSAVSCSFL
LKLLKAANILEASFSSKMELARRIAVQLEEATVSDFLIPSSSRNQDTKYD
VDIVITILEQFMLQGQSPTTSPSRAEGDFQRQRSRSAENIDFEFQESRRS
SSASHSSKLKVSKLVDGYLQVVAWEKQLPLAKFLQIAEALPAFSRPKHDG
LYKAIDIYLKGHPELNKSERKRLCRVLDCQKLSTEACSDAAQNELLPLRV
VVQVLFTEQARAAKNGQEATNIPSNIKALLHSHVDSPRPLGSSVTTKASG
ADDQWSISVLGTPKSNLSTLKMKLAEDEDLDENCTDETERSPRIRAFCAL
PDRPKRMLSKLWSINRHRSEKV*
Sequence Length:
623
Sequence Checksum:
48465bc3940e7290af45ca81c027a796
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_031156, derives from mRNA, DCAR_031156. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_031156 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_031156 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2H5N7R4 (NPH3 domain-containing protein {ECO:0000259|PROSITE:PS51649})
HSP 1 Score: 874.774 bits (2259), Expect = 0.000e+0
Identity = 452/629 (71.86%), Postives = 518/629 (82.35%), Query Frame = 0
Match: A0A2H5N7R4 (NPH3 domain-containing protein {ECO:0000259|PROSITE:PS51649})
HSP 1 Score: 874.774 bits (2259), Expect = 0.000e+0
Identity = 452/629 (71.86%), Postives = 518/629 (82.35%), Query Frame = 0
Query: 1 MKFMKLGSRPDTFCTNESVRSISSEVSCDLLIQVKGTRYFLHKFPLLTKCLRLQKLCSDSPESSPCQIVQLPEFPGGVEAFELCAKFCYGITITLSAYNIVSARLAAEYLQMTEDVEKGNLIYKLEVFLNSCVLHGWKDSVVTLQSTKAYPSWAEDLSITSRCIEAIALKVLSQPSKVP----QARRSRDNTQSCNVAESQPSKHVTKGWWADDVADLGIDLYWRTMIAIKSKRKVPSSLIGDALRIYASRRLPNISKHLDADKQVETDLKSD-ANEVSSKHRFLLESIISLLPVDRSAVSCSFLLKLLKAANILEASFSSKMELARRIAVQLEEATVSDFLIPSSSRNQDTKYDVDIVITILEQFMLQGQSPTTSPSRAEGDFQRQRSRSAENIDFEFQESRRSSSASHSSKLKVSKLVDGYLQVVAWEKQLPLAKFLQIAEALPAFSRPKHDGLYKAIDIYLKGHPELNKSERKRLCRVLDCQKLSTEACSDAAQNELLPLRVVVQVLFTEQARAAKNGQEATNIPSNIKALLHSH-VDSPRPLGSSVTTKASGADDQWSISVLGTPKSNLSTLKMKLAEDEDLDEN--CTDETERSPRIRAFCALPDRPKRMLSKLWSINRHRSEK 621
MKFMKLGSRPDTF T+E+VRSISSEVS DL+IQVKGTRY LHKFPLL+KCLRLQ+LCS+SPESS QIVQLP+FPGGV+AFELCAKFCYGITITLSAYNIV+AR AAEYLQMTEDVEKGNLIYK+EVF NSC+LHGW+DS+VTLQSTKA+P W+EDL ITSRCIEAIA KVL+ PSKV +RR RD+ SCN AESQ K TKGWWA+D+A+LGIDLYWRTMIAIKS K+PS+L+G+AL+IYASR LPNIS++ + +D SD A EV+SKHR LLESIISLLP ++ +VSCSFLLKLLKAANIL AS SSKMELARR+A+QLE+ATVSD LIP S DT YDVDIV+TILEQFMLQGQSP TSP R++ F+R+RSRSAENI+FE QESRRSSSASH SKLKV+KLVDGYLQ +A + LPL+KF+ IAE++P FSR HD LY+AIDIYLK HP+LNK ERKRLCR+LDC+KLS EAC AA+NELLPLRVVVQVLF EQARA G + T +PSNIKALL H +D RP TT DDQWSI L +PKS LSTL+MKLAED++LDEN D R+ + +AFCALP RPK+M SKL SINR SEK
Sbjct: 1 MKFMKLGSRPDTFYTSEAVRSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGVDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSKVSLSHSYSRRGRDDI-SCNGAESQRHKASTKGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRWLPNISRNGRINNHEASDSDSDSATEVTSKHRLLLESIISLLPAEKGSVSCSFLLKLLKAANILNASSSSKMELARRVALQLEDATVSDLLIPCLSYTSDTLYDVDIVMTILEQFMLQGQSPPTSPPRSKLGFERRRSRSAENINFELQESRRSSSASHGSKLKVAKLVDGYLQEIAKDVNLPLSKFITIAESVPEFSRLDHDDLYRAIDIYLKAHPDLNKCERKRLCRILDCKKLSMEACMHAARNELLPLRVVVQVLFFEQARATMAGGKMTELPSNIKALLAGHGIDPSRPPPPLSTTSTIPGDDQWSIPGLKSPKSKLSTLRMKLAEDDELDENDLHPDGMGRTSKFKAFCALPARPKKMFSKLLSINRSSSEK 628
BLAST of DCAR_031156 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6GVL5 (NPH3 domain-containing protein {ECO:0000259|PROSITE:PS51649})
HSP 1 Score: 874.774 bits (2259), Expect = 0.000e+0
Identity = 445/629 (70.75%), Postives = 522/629 (82.99%), Query Frame = 0
Match: F6GVL5 (NPH3 domain-containing protein {ECO:0000259|PROSITE:PS51649})
HSP 1 Score: 874.774 bits (2259), Expect = 0.000e+0
Identity = 445/629 (70.75%), Postives = 522/629 (82.99%), Query Frame = 0
Query: 1 MKFMKLGSRPDTFCTNESVRSISSEVSCDLLIQVKGTRYFLHKFPLLTKCLRLQKLCSDSPESSPCQIVQLPEFPGGVEAFELCAKFCYGITITLSAYNIVSARLAAEYLQMTEDVEKGNLIYKLEVFLNSCVLHGWKDSVVTLQSTKAYPSWAEDLSITSRCIEAIALKVLSQPSKV----PQARRSRDNTQSCNVAESQPSKHVTKGWWADDVADLGIDLYWRTMIAIKSKRKVPSSLIGDALRIYASRRLPNISKHLDADKQVETDLKSDA-NEVSSKHRFLLESIISLLPVDRSAVSCSFLLKLLKAANILEASFSSKMELARRIAVQLEEATVSDFLIPSSSRNQDTKYDVDIVITILEQFMLQGQSPTTSPSRAEGDFQRQRSRSAENIDFEFQESRRSSSASHSSKLKVSKLVDGYLQVVAWEKQLPLAKFLQIAEALPAFSRPKHDGLYKAIDIYLKGHPELNKSERKRLCRVLDCQKLSTEACSDAAQNELLPLRVVVQVLFTEQARAAKNGQEATNIPSNIKALLHSH-VDSPRPLGSSVTTKASGADDQWSISVLGTPKSNLSTLKMKLAEDEDLDEN--CTDETERSPRIRAFCALPDRPKRMLSKLWSINRHRSEK 621
MKFMKLGSRPDTF T E+VRS+SSE+S DL++QVKG+RY LHKFPLL+KCLRLQ+LCS+ ES+ QIVQLP+FPGGV+AFELCAKFCYGITITLSA+NIVSAR AAEYLQMTEDVEKGNLIYKLEVF NSC+LHGWKDS+VTLQSTK+YP W+EDL ITSRCIEAIA +VLS PSKV +RR RD+ SCN ES + V+KGWWA+D+A+LGIDLYWRT+IAIKS KVPS+LIGDAL+IYASR LPNISK K+ +D SD+ E++SKHRFLLESI+SLLP ++ AVSCSFLLKLLKAANIL+AS SSKMELARR+ +QLEEATV+D LIPS S DT YD+DIV+ ILEQFMLQGQSP +P R +G F+++RSRSAEN+DF FQESRRSSSASHSSKL+V+KLVDGYLQ +A + LPL+K + +AEA+P F+R HD LY+AIDIYLK HP+L+KSERKRLCR+LDC+KLS EAC AAQNELLPLRVVVQVLF EQARAA G + T +P+NIKALL +H VD RP TT A+DQWSIS L +PKS+LSTL+MKLAED+DL+EN D RS +++A C++P RPKRMLSKLWSINR SEK
Sbjct: 1 MKFMKLGSRPDTFYTTEAVRSVSSEISSDLIVQVKGSRYMLHKFPLLSKCLRLQRLCSEFHESAQPQIVQLPDFPGGVDAFELCAKFCYGITITLSAFNIVSARCAAEYLQMTEDVEKGNLIYKLEVFFNSCILHGWKDSIVTLQSTKSYPLWSEDLGITSRCIEAIASRVLSHPSKVNLSHSYSRRGRDDLSSCNGTESLRHRPVSKGWWAEDIAELGIDLYWRTIIAIKSGGKVPSNLIGDALKIYASRWLPNISKDGTIMKRAASDPDSDSIGEITSKHRFLLESIVSLLPAEKGAVSCSFLLKLLKAANILKASSSSKMELARRVGIQLEEATVNDLLIPSLSYTNDTLYDLDIVMIILEQFMLQGQSPPITPPRVKGSFEKRRSRSAENVDFGFQESRRSSSASHSSKLRVAKLVDGYLQEIARDVNLPLSKMIALAEAVPDFARLDHDDLYRAIDIYLKAHPDLSKSERKRLCRILDCKKLSVEACMHAAQNELLPLRVVVQVLFFEQARAAMAGGQVTELPNNIKALLATHNVDPSRPPAPLSTTTTVAAEDQWSISGLKSPKSSLSTLRMKLAEDDDLEENDIHPDGIGRSSKLKALCSIPTRPKRMLSKLWSINRSASEK 629
BLAST of DCAR_031156 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: V4TNR8 (NPH3 domain-containing protein {ECO:0000259|PROSITE:PS51649})
HSP 1 Score: 873.233 bits (2255), Expect = 0.000e+0
Identity = 452/629 (71.86%), Postives = 517/629 (82.19%), Query Frame = 0
Match: V4TNR8 (NPH3 domain-containing protein {ECO:0000259|PROSITE:PS51649})
HSP 1 Score: 873.233 bits (2255), Expect = 0.000e+0
Identity = 452/629 (71.86%), Postives = 517/629 (82.19%), Query Frame = 0
Query: 1 MKFMKLGSRPDTFCTNESVRSISSEVSCDLLIQVKGTRYFLHKFPLLTKCLRLQKLCSDSPESSPCQIVQLPEFPGGVEAFELCAKFCYGITITLSAYNIVSARLAAEYLQMTEDVEKGNLIYKLEVFLNSCVLHGWKDSVVTLQSTKAYPSWAEDLSITSRCIEAIALKVLSQPSKVP----QARRSRDNTQSCNVAESQPSKHVTKGWWADDVADLGIDLYWRTMIAIKSKRKVPSSLIGDALRIYASRRLPNISKHLDADKQVETDLKSD-ANEVSSKHRFLLESIISLLPVDRSAVSCSFLLKLLKAANILEASFSSKMELARRIAVQLEEATVSDFLIPSSSRNQDTKYDVDIVITILEQFMLQGQSPTTSPSRAEGDFQRQRSRSAENIDFEFQESRRSSSASHSSKLKVSKLVDGYLQVVAWEKQLPLAKFLQIAEALPAFSRPKHDGLYKAIDIYLKGHPELNKSERKRLCRVLDCQKLSTEACSDAAQNELLPLRVVVQVLFTEQARAAKNGQEATNIPSNIKALLHSH-VDSPRPLGSSVTTKASGADDQWSISVLGTPKSNLSTLKMKLAEDEDLDEN--CTDETERSPRIRAFCALPDRPKRMLSKLWSINRHRSEK 621
MKFMKLGSRPDTF T+E+VRSISSEVS DL+IQVKGTRY LHKFPLL+KCLRLQ+LCS+SPESS QIVQLP+FPGGV+AFELCAKFCYGITITLSAYNIV+AR AAEYLQMTEDVEKGNLIYK+EVF NSC+LHGW+DS+VTLQSTKA+P W+EDL ITSRCIEAIA KVL+ PSKV +RR RD+ SCN AESQ K TKGWWA+D+A+LGIDLYWRTMIAIKS K+PS+L+G+AL+IYASR LPNIS++ + +D SD A EV+SKHR LLESIISLLP ++ +VSCSFLLKLLKAANIL AS SSKMELARR+A+QLEEATVSD LIP S DT YDVDIV+TILEQF LQGQSP TSP R++ F+R+RSRSAENI+FE QESRRSSSASH SKLKV+KLVDGYLQ +A + LPL+KF+ IAE++P FSR HD LY+AIDIYLK HP+LNK ERKRLCR+LDC+KLS EAC AA+NELLPLRVVVQVLF EQARA G + T +PSNIKALL H +D RP TT DDQWSI L +PKS LSTL+MKLAED++LDEN D R+ + +AFCALP RPK+M SKL SINR SEK
Sbjct: 1 MKFMKLGSRPDTFYTSEAVRSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGVDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSKVSLSHSYSRRGRDDI-SCNGAESQRHKASTKGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRWLPNISRNGRINNHEASDSDSDSATEVTSKHRLLLESIISLLPAEKGSVSCSFLLKLLKAANILNASSSSKMELARRVALQLEEATVSDLLIPCLSYTSDTLYDVDIVMTILEQFTLQGQSPPTSPPRSKLGFERRRSRSAENINFELQESRRSSSASHGSKLKVAKLVDGYLQEIAKDVNLPLSKFITIAESVPEFSRLDHDDLYRAIDIYLKAHPDLNKCERKRLCRILDCKKLSMEACMHAARNELLPLRVVVQVLFFEQARATMAGGKMTELPSNIKALLAGHGIDPSRPPPPLSTTSTIPGDDQWSIPGLKSPKSKLSTLRMKLAEDDELDENDLHPDGMGRTSKFKAFCALPARPKKMFSKLLSINRSSSEK 628
BLAST of DCAR_031156 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A067H3W3 (NPH3 domain-containing protein {ECO:0000259|PROSITE:PS51649})
HSP 1 Score: 872.078 bits (2252), Expect = 0.000e+0
Identity = 451/629 (71.70%), Postives = 517/629 (82.19%), Query Frame = 0
Match: A0A067H3W3 (NPH3 domain-containing protein {ECO:0000259|PROSITE:PS51649})
HSP 1 Score: 872.078 bits (2252), Expect = 0.000e+0
Identity = 451/629 (71.70%), Postives = 517/629 (82.19%), Query Frame = 0
Query: 1 MKFMKLGSRPDTFCTNESVRSISSEVSCDLLIQVKGTRYFLHKFPLLTKCLRLQKLCSDSPESSPCQIVQLPEFPGGVEAFELCAKFCYGITITLSAYNIVSARLAAEYLQMTEDVEKGNLIYKLEVFLNSCVLHGWKDSVVTLQSTKAYPSWAEDLSITSRCIEAIALKVLSQPSKVP----QARRSRDNTQSCNVAESQPSKHVTKGWWADDVADLGIDLYWRTMIAIKSKRKVPSSLIGDALRIYASRRLPNISKHLDADKQVETDLKSD-ANEVSSKHRFLLESIISLLPVDRSAVSCSFLLKLLKAANILEASFSSKMELARRIAVQLEEATVSDFLIPSSSRNQDTKYDVDIVITILEQFMLQGQSPTTSPSRAEGDFQRQRSRSAENIDFEFQESRRSSSASHSSKLKVSKLVDGYLQVVAWEKQLPLAKFLQIAEALPAFSRPKHDGLYKAIDIYLKGHPELNKSERKRLCRVLDCQKLSTEACSDAAQNELLPLRVVVQVLFTEQARAAKNGQEATNIPSNIKALLHSH-VDSPRPLGSSVTTKASGADDQWSISVLGTPKSNLSTLKMKLAEDEDLDEN--CTDETERSPRIRAFCALPDRPKRMLSKLWSINRHRSEK 621
MKFMKLGSRPDTF T+E+VRSISSEVS DL+IQVKGTRY LHKFPLL+KCLRLQ+LCS+SPESS QIVQLP+FPGG++AFELCAKFCYGITITLSAYNIV+AR AAEYLQMTEDVEKGNLIYK+EVF NSC+LHGW+DS+VTLQSTKA+P W+EDL ITSRCIEAIA KVL+ PSKV +RR RD+ SCN AESQ K TKGWWA+D+A+LGIDLYWRTMIAIKS K+PS+L+G+AL+IYASR LPNIS++ + +D SD A EV+SKHR LLESIISLLP ++ +VSCSFLLKLLKAANIL AS SSKMELARR+A+QLEEATVSD LIP S DT YDVDIV+TILEQF LQGQSP TSP R++ F+R+RSRSAENI+FE QESRRSSSASH SKLKV+KLVDGYLQ +A + LPL+KF+ IAE++P FSR HD LY+AIDIYLK HP+LNK ERKRLCR+LDC+KLS EAC AA+NELLPLRVVVQVLF EQARA G + T +PSNIKALL H +D RP TT DDQWSI L +PKS LSTL+MKLAED++LDEN D R+ + +AFCALP RPK+M SKL SINR SEK
Sbjct: 1 MKFMKLGSRPDTFYTSEAVRSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGIDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSKVSLSHSYSRRGRDDI-SCNGAESQRHKASTKGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLVGEALKIYASRWLPNISRNGRINNHEASDSDSDSATEVTSKHRLLLESIISLLPAEKGSVSCSFLLKLLKAANILNASSSSKMELARRVALQLEEATVSDLLIPCLSYTSDTLYDVDIVMTILEQFKLQGQSPPTSPPRSKLGFERRRSRSAENINFELQESRRSSSASHGSKLKVAKLVDGYLQEIAKDVNLPLSKFITIAESVPEFSRLDHDDLYRAIDIYLKAHPDLNKCERKRLCRILDCKKLSMEACMHAARNELLPLRVVVQVLFFEQARATMAGGKMTELPSNIKALLAGHGIDPSRPPPPLSTTSTIPGDDQWSIPGLKSPKSKLSTLRMKLAEDDELDENDLHPDGMGRTSKFKAFCALPARPKKMFSKLLSINRSSSEK 628
BLAST of DCAR_031156 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6J1B2T2 ((BTB/POZ domain-containing protein At1g67900 {ECO:0000313|RefSeq:XP_021293480.1, ECO:0000313|RefSeq:XP_021293481.1}))
HSP 1 Score: 868.226 bits (2242), Expect = 0.000e+0
Identity = 455/630 (72.22%), Postives = 522/630 (82.86%), Query Frame = 0
Match: A0A6J1B2T2 ((BTB/POZ domain-containing protein At1g67900 {ECO:0000313|RefSeq:XP_021293480.1, ECO:0000313|RefSeq:XP_021293481.1}))
HSP 1 Score: 868.226 bits (2242), Expect = 0.000e+0
Identity = 455/630 (72.22%), Postives = 522/630 (82.86%), Query Frame = 0
Query: 1 MKFMKLGSRPDTFCTNESVRSISSEVSCDLLIQVKGTRYFLHKFPLLTKCLRLQKLCSDSPESSPCQIVQLPEFPGGVEAFELCAKFCYGITITLSAYNIVSARLAAEYLQMTEDVEKGNLIYKLEVFLNSCVLHGWKDSVVTLQSTKAYPSWAEDLSITSRCIEAIALKVLSQPSKV----PQARRSRDNTQSCNVAESQPSKHVTKGWWADDVADLGIDLYWRTMIAIKSKRKVPSSLIGDALRIYASRRLPNISKHLDADKQ-VETDLKSDANEVSSKHRFLLESIISLLPVDRSAVSCSFLLKLLKAANILEASFSSKMELARRIAVQLEEATVSDFLIPSSSRNQDTKYDVDIVITILEQFMLQGQSPTTSPSRAEGDFQ-RQRSRSAENIDFEFQESRRSSSASHSSKLKVSKLVDGYLQVVAWEKQLPLAKFLQIAEALPAFSRPKHDGLYKAIDIYLKGHPELNKSERKRLCRVLDCQKLSTEACSDAAQNELLPLRVVVQVLFTEQARAAKNGQEATNIPSNIKALLHSH-VDSPRPLGSSVTTKASGADDQWSISVLGTPKSNLSTLKMKLAEDEDLDEN--CTDETERSPRIRAFCALPDRPKRMLSKLWSINRHRSEK 621
MKFMKLGSRPDTF T E+VRS+SSEVS DL+IQVKG+RY LHKFPLL+KCLRLQ+LCS+SPE+S QI+QLP+FPGG+EAFELCAKFCYGITITLSAYNIVSAR AAEYLQMTEDVEKGNL YKLEVF NSC+LHGWKDS+VTLQSTKA+P W+EDL ITSRCIEAIA KVL+ PSKV +RR RD+ SCN AESQ + TKGWWA+D+A+LGIDLYWRTMIAIKS K+PS+LIG+AL+IYASR LPNIS+ + A K+ A EV+SKHR LLESI+SLLP ++ AVSCSFLLKLLKAANIL AS SSKMELARR+A+QLEEA VSD LIPS S + D+ YDVDIV+ ILEQFMLQGQSP TSP R++ F+ R+RSRSAENIDFEFQE+RRSSSASHSSKLKV+K+VDGYL+ +A +K LPL+KF+ IAE +P FSR HD LY+AIDIYLK HP+LNKSERK+LCRVLDC+KLS EAC AAQNE LPLRVVVQVLF EQARAA G + T +PSNIKALL SH +D RP G TT + ADDQWS+S L +PKS +STL+MKLAED+DLDEN TD R + +AFCALP RPK+M SKL SINR SEK
Sbjct: 1 MKFMKLGSRPDTFYTAEAVRSVSSEVSSDLIIQVKGSRYLLHKFPLLSKCLRLQRLCSESPETSQHQIIQLPDFPGGIEAFELCAKFCYGITITLSAYNIVSARCAAEYLQMTEDVEKGNLAYKLEVFFNSCILHGWKDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSKVSLSHSHSRRVRDDI-SCNGAESQRHRPTTKGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLIGEALQIYASRSLPNISRQIKAKKEAASDSDSDSAGEVTSKHRLLLESIVSLLPSEKGAVSCSFLLKLLKAANILNASSSSKMELARRVALQLEEARVSDLLIPSVSYSSDSLYDVDIVMIILEQFMLQGQSPPTSPQRSKLGFEGRRRSRSAENIDFEFQENRRSSSASHSSKLKVAKIVDGYLKEIARDKTLPLSKFIAIAETIPDFSRHDHDDLYRAIDIYLKAHPDLNKSERKKLCRVLDCKKLSVEACMHAAQNEKLPLRVVVQVLFFEQARAATAGGKVTELPSNIKALLASHNIDPSRPPGPLSTTTSIQADDQWSVSGLKSPKSRISTLRMKLAEDDDLDENDMHTDGMGRPSKFKAFCALPARPKKMFSKLLSINRSGSEK 629
BLAST of DCAR_031156 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A068UYD1 (NPH3 domain-containing protein {ECO:0000259|PROSITE:PS51649})
HSP 1 Score: 865.914 bits (2236), Expect = 0.000e+0
Identity = 451/627 (71.93%), Postives = 520/627 (82.93%), Query Frame = 0
Match: A0A068UYD1 (NPH3 domain-containing protein {ECO:0000259|PROSITE:PS51649})
HSP 1 Score: 865.914 bits (2236), Expect = 0.000e+0
Identity = 451/627 (71.93%), Postives = 520/627 (82.93%), Query Frame = 0
Query: 1 MKFMKLGSRPDTFCTNESVRSISSEVSCDLLIQVKGTRYFLHKFPLLTKCLRLQKLCSDSPESSPCQIVQLPEFPGGVEAFELCAKFCYGITITLSAYNIVSARLAAEYLQMTEDVEKGNLIYKLEVFLNSCVLHGWKDSVVTLQSTKAYPSWAEDLSITSRCIEAIALKVLSQPSKV----PQARRSRDNTQSCNVAESQPSKHVTKGWWADDVADLGIDLYWRTMIAIKSKRKVPSSLIGDALRIYASRRLPNISKHLDADKQVETDLKSDA-NEVSSKHRFLLESIISLLPVDRSAVSCSFLLKLLKAANILEASFSSKMELARRIAVQLEEATVSDFLIPSSSRNQDTKYDVDIVITILEQFMLQGQSPTTSPSRAEGDFQRQRSRSAENIDFEFQESRRSSSASHSSKLKVSKLVDGYLQVVAWEKQLPLAKFLQIAEALPAFSRPKHDGLYKAIDIYLKGHPELNKSERKRLCRVLDCQKLSTEACSDAAQNELLPLRVVVQVLFTEQARAAKNGQEATNIPSNIKALLHSHVD-SPRPLGSSVTTKASGADDQWSISVLGTPKSNLSTLKMKLAEDEDLDENCTDETERSPRIRAFCALPDRPKRMLSKLWSINRHRSEK 621
MKFMKLGSRPDTF T E+VRS+SSEVS DL++QVKG+RY LHKFPLL+KCLRLQ+LC+++ ES QIVQLP+FPGGVEAFELCAKFCYGITITLSAYNIVSAR AAEYLQMTEDVEKGNLIYKLEVF NSC+L GWKDSVVTLQSTKAYP W+EDL +TSRCIEAIA K+L+ PSKV +RR RD+ SCN +ESQ K TKGWWA+D+A+LGIDLYWRTMIAIKS KVPS+L+GDALRIYA+R LPNISK++ D +VE++ + D+ EV+SKHR LLESI+SLLP ++ +VSC FL KLLKAANIL+AS +SK ELARRI +QL+EA VSD LIPS S + YDVD+ +TILEQFMLQGQSP TSP RA+ DF+R+RSRSAENIDFEFQESRRSSSASHSSKLKV+KLVDGYLQ +A + +PL+KF IA ALP F+R HD LYKAIDIYLKGHPELNKS+RKRLCR+LDC+KLS EAC AAQNE+LPLRVVVQVLF EQARAA G + T++PSNIKALL +H D S RP S + ADDQWS+S +PKS LSTLKMKLAED+DLDEN D +S R++A C LP+RPKRMLSKLW NR SEK
Sbjct: 1 MKFMKLGSRPDTFYTTEAVRSVSSEVSSDLIVQVKGSRYMLHKFPLLSKCLRLQRLCAENLESQH-QIVQLPDFPGGVEAFELCAKFCYGITITLSAYNIVSARCAAEYLQMTEDVEKGNLIYKLEVFFNSCILQGWKDSVVTLQSTKAYPLWSEDLGMTSRCIEAIASKILANPSKVCLSHSYSRRGRDDI-SCNGSESQRQKPATKGWWAEDIAELGIDLYWRTMIAIKSGGKVPSNLVGDALRIYAARWLPNISKYISVDNEVESEPEMDSIKEVTSKHRLLLESIVSLLPAEKGSVSCGFLSKLLKAANILKASSASKNELARRIGIQLDEAAVSDLLIPSLSYTSNMLYDVDVAMTILEQFMLQGQSPPTSPPRAKRDFERRRSRSAENIDFEFQESRRSSSASHSSKLKVAKLVDGYLQEIARDVNVPLSKFTAIASALPEFARVDHDDLYKAIDIYLKGHPELNKSDRKRLCRILDCRKLSVEACMHAAQNEMLPLRVVVQVLFFEQARAAMAGGQVTDLPSNIKALLATHNDHSSRPAASFSNNGMTPADDQWSVSGAKSPKSKLSTLKMKLAEDDDLDENYQDGIGKSSRVKALCMLPNRPKRMLSKLWPSNRSTSEK 625
BLAST of DCAR_031156 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P4AD23 ((BTB/POZ domain-containing protein At1g67900 {ECO:0000313|RefSeq:XP_015894552.1}))
HSP 1 Score: 863.988 bits (2231), Expect = 0.000e+0
Identity = 448/629 (71.22%), Postives = 520/629 (82.67%), Query Frame = 0
Match: A0A6P4AD23 ((BTB/POZ domain-containing protein At1g67900 {ECO:0000313|RefSeq:XP_015894552.1}))
HSP 1 Score: 863.988 bits (2231), Expect = 0.000e+0
Identity = 448/629 (71.22%), Postives = 520/629 (82.67%), Query Frame = 0
Query: 1 MKFMKLGSRPDTFCTNESVRSISSEVSCDLLIQVKGTRYFLHKFPLLTKCLRLQKLCSDSPESSPCQIVQLPEFPGGVEAFELCAKFCYGITITLSAYNIVSARLAAEYLQMTEDVEKGNLIYKLEVFLNSCVLHGWKDSVVTLQSTKAYPSWAEDLSITSRCIEAIALKVLSQPSKVP----QARRSRDNTQSCNVAESQPSKHVTKGWWADDVADLGIDLYWRTMIAIKSKRKVPSSLIGDALRIYASRRLPNISKH-LDADKQVETDLKSDANEVSSKHRFLLESIISLLPVDRSAVSCSFLLKLLKAANILEASFSSKMELARRIAVQLEEATVSDFLIPSSSRNQDTKYDVDIVITILEQFMLQGQSPTTSPSRAEGDFQRQRSRSAENIDFEFQESRRSSSASHSSKLKVSKLVDGYLQVVAWEKQLPLAKFLQIAEALPAFSRPKHDGLYKAIDIYLKGHPELNKSERKRLCRVLDCQKLSTEACSDAAQNELLPLRVVVQVLFTEQARAAKNGQEATNIPSNIKALLHSH-VDSPRPLGSSVTTKASGADDQWSISVLGTPKSNLSTLKMKLAEDEDLDEN--CTDETERSPRIRAFCALPDRPKRMLSKLWSINRHRSEK 621
MKFMKLGSRPDTF T E+VR++SSEVS DL+IQVKG+RY LHKFPLL+KCLRLQ+LCS+SPESS QI+QLP+FPGG+EAFE+CAKFCYGITITLSAYNIVSAR AAEYLQMTEDVEKGNLIYK+EVF NSC+LHGW+DS+VTLQSTKAY W+EDL ITSRCIEAIA KVL+ PSKV +RR RD+ SCN AESQ K TKGWWA+D+A+LGIDLYWRTMIAIKS K+PS+LIGDAL+IYASR LP+I ++ + + A+EVSSKHR LLESI+SLLP ++ AVSCSFLLKLLKAANIL AS SSK+ELARRI +QLEEATVSD LIPS S DT YD+DIV+TILEQFMLQGQSP TSP R++ F+R+RSRSAENIDF+FQESRRSSSASHS+KLKV+KLVDGYLQ +A E +L L+KF+ +AE +P F+R HD LY+AIDIYL+ HPELNKSERKRLCR+LDC+KLS EAC AAQNELLPLRVVVQVLF EQARAA G + T +PSNIKALL +H +D +P TT + ADDQWS+S L +PKS +STL+MKLAED++LDEN D RS +++A CALP RPKRM SKLWS NR SEK
Sbjct: 1 MKFMKLGSRPDTFYTTEAVRAVSSEVSSDLIIQVKGSRYLLHKFPLLSKCLRLQRLCSESPESSQHQIIQLPDFPGGIEAFEMCAKFCYGITITLSAYNIVSARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAYALWSEDLGITSRCIEAIASKVLTHPSKVSLSHSYSRRVRDDV-SCNGAESQRHKPATKGWWAEDMAELGIDLYWRTMIAIKSGGKIPSNLIGDALKIYASRWLPSIPRNGITNNHGSSDSDSDSASEVSSKHRLLLESIVSLLPAEKGAVSCSFLLKLLKAANILHASSSSKIELARRIGLQLEEATVSDLLIPSVSYKSDTVYDIDIVLTILEQFMLQGQSPPTSPPRSKLGFERRRSRSAENIDFDFQESRRSSSASHSAKLKVAKLVDGYLQEIARESKLSLSKFIALAETIPDFARLDHDDLYRAIDIYLRAHPELNKSERKRLCRILDCKKLSMEACMHAAQNELLPLRVVVQVLFFEQARAAMAGGKVTELPSNIKALLATHNIDPSKPPPPLSTTTSIQADDQWSVSGLKSPKSRMSTLRMKLAEDDELDENEIHPDGIVRSSKLKAICALPTRPKRMFSKLWSTNRAASEK 628
BLAST of DCAR_031156 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6V3F3 ((LOW QUALITY PROTEIN: BTB/POZ domain-containing protein At1g67900-like {ECO:0000313|RefSeq:XP_027097201.1}))
HSP 1 Score: 862.448 bits (2227), Expect = 0.000e+0
Identity = 449/627 (71.61%), Postives = 519/627 (82.78%), Query Frame = 0
Match: A0A6P6V3F3 ((LOW QUALITY PROTEIN: BTB/POZ domain-containing protein At1g67900-like {ECO:0000313|RefSeq:XP_027097201.1}))
HSP 1 Score: 862.448 bits (2227), Expect = 0.000e+0
Identity = 449/627 (71.61%), Postives = 519/627 (82.78%), Query Frame = 0
Query: 1 MKFMKLGSRPDTFCTNESVRSISSEVSCDLLIQVKGTRYFLHKFPLLTKCLRLQKLCSDSPESSPCQIVQLPEFPGGVEAFELCAKFCYGITITLSAYNIVSARLAAEYLQMTEDVEKGNLIYKLEVFLNSCVLHGWKDSVVTLQSTKAYPSWAEDLSITSRCIEAIALKVLSQPSKV----PQARRSRDNTQSCNVAESQPSKHVTKGWWADDVADLGIDLYWRTMIAIKSKRKVPSSLIGDALRIYASRRLPNISKHLDADKQVETDLKSDA-NEVSSKHRFLLESIISLLPVDRSAVSCSFLLKLLKAANILEASFSSKMELARRIAVQLEEATVSDFLIPSSSRNQDTKYDVDIVITILEQFMLQGQSPTTSPSRAEGDFQRQRSRSAENIDFEFQESRRSSSASHSSKLKVSKLVDGYLQVVAWEKQLPLAKFLQIAEALPAFSRPKHDGLYKAIDIYLKGHPELNKSERKRLCRVLDCQKLSTEACSDAAQNELLPLRVVVQVLFTEQARAAKNGQEATNIPSNIKALLHSHVD-SPRPLGSSVTTKASGADDQWSISVLGTPKSNLSTLKMKLAEDEDLDENCTDETERSPRIRAFCALPDRPKRMLSKLWSINRHRSEK 621
MKFMKLGSRPDTF T E+VRS+SSEVS DL++QVKG+RY LHKFPLL+KCLRLQ+LC+++ ES QIVQLP+FPGGVEAFELCAKFCYGITITLSAYNIVSAR AAEYLQMTEDVEKGNLIYKLEVF NSC+L GWKDSVVTLQSTKAYP W+EDL +TSRCIEAIA K+L+ PSK+ +RR RD+ SCN +ESQ K TKGWWA+D+A+LGIDLYWRTMIAIKS KVPS+L+GDALRIYA+R LPNISK++ D +VE++ + D+ EV+SKHR LLESI+SLLP ++ +V C FL KLLKAANIL+AS +SK ELARRI +QL+EA VSD LIPS S + YDVD+ +TILEQFMLQGQSP TSP RA+ DF+R+RSRSAENIDFEFQESRRSSSASHSSKLKV+KLVDGYLQ +A + +PL+KF IA ALP F+R HD LYKAIDIYLKGHPELNKS+RKRLCR+LDC+KLS EAC AAQNE+LPLRVVVQVLF EQARAA G + T++PSNIKALL +H D S RP S + ADDQWS+S +PKS LSTLKMKLAED+DLDEN D +S R++A C LP+RPKRMLSKLW NR SEK
Sbjct: 1 MKFMKLGSRPDTFYTTEAVRSVSSEVSSDLIVQVKGSRYMLHKFPLLSKCLRLQRLCAENLESQH-QIVQLPDFPGGVEAFELCAKFCYGITITLSAYNIVSARCAAEYLQMTEDVEKGNLIYKLEVFFNSCILQGWKDSVVTLQSTKAYPLWSEDLGMTSRCIEAIASKILANPSKMCLSHSYSRRGRDDI-SCNGSESQRQKPATKGWWAEDIAELGIDLYWRTMIAIKSGGKVPSNLVGDALRIYAARWLPNISKYISVDNEVESEPEMDSIKEVTSKHRLLLESIVSLLPAEKGSVXCGFLSKLLKAANILKASSASKNELARRIGIQLDEAAVSDLLIPSLSYTSNMLYDVDVAMTILEQFMLQGQSPPTSPPRAKRDFERRRSRSAENIDFEFQESRRSSSASHSSKLKVAKLVDGYLQEIARDVNVPLSKFXSIASALPEFARVDHDDLYKAIDIYLKGHPELNKSDRKRLCRILDCRKLSVEACMHAAQNEMLPLRVVVQVLFFEQARAAMAGGQVTDLPSNIKALLATHNDHSSRPAASFSNNGMTPADDQWSVSGAKSPKSKLSTLKMKLAEDDDLDENYQDGIGKSSRVKALCMLPNRPKRMLSKLWPSNRSTSEK 625
BLAST of DCAR_031156 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A6P6VDM0 ((BTB/POZ domain-containing protein At1g67900-like {ECO:0000313|RefSeq:XP_027100077.1}))
HSP 1 Score: 862.062 bits (2226), Expect = 0.000e+0
Identity = 450/627 (71.77%), Postives = 519/627 (82.78%), Query Frame = 0
Match: A0A6P6VDM0 ((BTB/POZ domain-containing protein At1g67900-like {ECO:0000313|RefSeq:XP_027100077.1}))
HSP 1 Score: 862.062 bits (2226), Expect = 0.000e+0
Identity = 450/627 (71.77%), Postives = 519/627 (82.78%), Query Frame = 0
Query: 1 MKFMKLGSRPDTFCTNESVRSISSEVSCDLLIQVKGTRYFLHKFPLLTKCLRLQKLCSDSPESSPCQIVQLPEFPGGVEAFELCAKFCYGITITLSAYNIVSARLAAEYLQMTEDVEKGNLIYKLEVFLNSCVLHGWKDSVVTLQSTKAYPSWAEDLSITSRCIEAIALKVLSQPSKV----PQARRSRDNTQSCNVAESQPSKHVTKGWWADDVADLGIDLYWRTMIAIKSKRKVPSSLIGDALRIYASRRLPNISKHLDADKQVETDLKSDA-NEVSSKHRFLLESIISLLPVDRSAVSCSFLLKLLKAANILEASFSSKMELARRIAVQLEEATVSDFLIPSSSRNQDTKYDVDIVITILEQFMLQGQSPTTSPSRAEGDFQRQRSRSAENIDFEFQESRRSSSASHSSKLKVSKLVDGYLQVVAWEKQLPLAKFLQIAEALPAFSRPKHDGLYKAIDIYLKGHPELNKSERKRLCRVLDCQKLSTEACSDAAQNELLPLRVVVQVLFTEQARAAKNGQEATNIPSNIKALLHSHVD-SPRPLGSSVTTKASGADDQWSISVLGTPKSNLSTLKMKLAEDEDLDENCTDETERSPRIRAFCALPDRPKRMLSKLWSINRHRSEK 621
MKFMKLGSRPDTF T E+VRS+SSEVS DL++QVKG+RY LHKFPLL+KCLRLQ+LC+++ ES QIVQLP+FPGGVEAFELCAKFCYGITITLSAYNIVSAR AAEYLQMTEDVEKGNLIYKLEVF NSC+L GWKDSVVTLQSTKAYP W+EDL +TSRCIEAIA K+L+ PSK+ +RR RD+ SCN +ESQ K TKGWWA+D+A+LGIDLYWRTMIAIKS KVPS+L+GDALRIYA+R LPNISK+ D +VE++ + D+ EV+SKHR LLESI+SLLP ++ +VS FL KLLKAANIL+AS +SK ELARRI +QL+EA VSD LIPS S + YDVD+ +TILEQFMLQGQSP TSP RA+ DF+R+RSRSAENIDFEFQESRRSSSASHSSKLKV+KLVDGYLQ +A + +PL+KF IA ALP F+R HD LYKAIDIYLKGHPELNKS+RKRLCR+LDC+KLS EAC AAQNE+LPLRVVVQVLF EQARAA G + T++PSNIKALL +H D S RP S + ADDQWS+S +PKS LSTLKMKLAED+DLDEN D +S R++AFC LP+RPKRMLSKLW NR SEK
Sbjct: 1 MKFMKLGSRPDTFYTTEAVRSVSSEVSSDLIVQVKGSRYMLHKFPLLSKCLRLQRLCAENLESQQ-QIVQLPDFPGGVEAFELCAKFCYGITITLSAYNIVSARCAAEYLQMTEDVEKGNLIYKLEVFFNSCILQGWKDSVVTLQSTKAYPLWSEDLGMTSRCIEAIASKILANPSKMCLSHSYSRRGRDDI-SCNGSESQRQKPATKGWWAEDIAELGIDLYWRTMIAIKSGGKVPSNLVGDALRIYAARWLPNISKYTSVDNEVESEPEMDSIKEVTSKHRLLLESIVSLLPAEKGSVSSGFLSKLLKAANILKASSASKNELARRIGIQLDEAAVSDLLIPSLSYTSNMLYDVDVAMTILEQFMLQGQSPPTSPPRAKRDFERRRSRSAENIDFEFQESRRSSSASHSSKLKVAKLVDGYLQEIARDVNVPLSKFTAIASALPEFARVDHDDLYKAIDIYLKGHPELNKSDRKRLCRILDCRKLSVEACMHAAQNEMLPLRVVVQVLFFEQARAAMAGGQVTDLPSNIKALLATHNDHSSRPAASFSNNGMTPADDQWSVSGAKSPKSKLSTLKMKLAEDDDLDENYQDGIGKSSRVKAFCMLPNRPKRMLSKLWPSNRSTSEK 625
BLAST of DCAR_031156 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZKV4 (NPH3 domain-containing protein {ECO:0000259|PROSITE:PS51649})
HSP 1 Score: 859.751 bits (2220), Expect = 0.000e+0
Identity = 455/627 (72.57%), Postives = 523/627 (83.41%), Query Frame = 0
Match: A0A5B6ZKV4 (NPH3 domain-containing protein {ECO:0000259|PROSITE:PS51649})
HSP 1 Score: 859.751 bits (2220), Expect = 0.000e+0
Identity = 455/627 (72.57%), Postives = 523/627 (83.41%), Query Frame = 0
Query: 1 MKFMKLGSRPDTFCTNESVRSISSEVSCDLLIQVKGTRYFLHKFPLLTKCLRLQKLCSDSPESSPCQIVQLPEFPGGVEAFELCAKFCYGITITLSAYNIVSARLAAEYLQMTEDVEKGNLIYKLEVFLNSCVLHGWKDSVVTLQSTKAYPSWAEDLSITSRCIEAIALKVLSQPSKV----PQARRSRDNTQSCNVAESQPSKHVTKGWWADDVADLGIDLYWRTMIAIKSKRKVPSSLIGDALRIYASRRLPNISKHLDADKQVETDLKSDA-NEVSSKHRFLLESIISLLPVDRSAVSCSFLLKLLKAANILEASFSSKMELARRIAVQLEEATVSDFLIPSSSRNQDTKYDVDIVITILEQFMLQGQSPTTSPSRAEGDFQRQR-SRSAENIDFEFQESRRSSSASHSSKLKVSKLVDGYLQVVAWEKQLPLAKFLQIAEALPAFSRPKHDGLYKAIDIYLKGHPELNKSERKRLCRVLDCQKLSTEACSDAAQNELLPLRVVVQVLFTEQARAAKNGQEATNIPSNIKALLHSHVDSPRPLGSSVTTKASGADDQWSISVLGTPKSNLSTLKMKLAEDEDLDENCTDETERSPRIRAFCALPDRPKRMLSKLWSINRHRSEK 621
MKFMKLGSRPDTFCT+E+V+S+SSEVS DL++QVKG+RY LHKFPLL+KCLRLQ+ CS+ PESS QIVQLP+FPGGVEAFELCAKFCYGITITLSA+NIVSAR AAEYLQMTEDVEKGNLIYKLEVF NSC+LHGWKDS+VTLQSTKA+P W+EDL ITSRCIEAIA KVLS PSK +RR RD+ SCN A+SQ K VTKGWWA+D+A+LGIDLYWRT+IAIKS KVPS+LIGDALR+YASR LPNI K KQVE++ SD+ EV+SKHR LLESIISLLPV++ AVSCSFLLKLLKAANIL AS SSKMELARR+ +QLEEATV+D LIPS S + D YDVDI++ ILEQFMLQGQSP TSP R +G F+R+R SRSA+N+DFEFQESRRSSSASHSSKLKV+KLVDGYLQ +A + LPL+KF+ +AEALP F+R HD LY+AIDIYLK HP+LNKSERK LCR+LDC+KLS EAC AAQNELLPLRVVVQVLF EQAR A G + T +P+NIKALL +H D +P S T A+DQWS+S L +PKS LSTL+MKLAED+DLDEN TD +S R++ C++P RPKRM SKLWSINR SEK
Sbjct: 1 MKFMKLGSRPDTFCTSEAVKSVSSEVSSDLIVQVKGSRYLLHKFPLLSKCLRLQRFCSECPESSQQQIVQLPDFPGGVEAFELCAKFCYGITITLSAFNIVSARCAAEYLQMTEDVEKGNLIYKLEVFFNSCILHGWKDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLSHPSKANLSHSYSRRGRDDV-SCNGADSQRHKPVTKGWWAEDIAELGIDLYWRTIIAIKSGGKVPSNLIGDALRMYASRWLPNIPKDRKKSKQVESEPDSDSVGEVNSKHRLLLESIISLLPVEKGAVSCSFLLKLLKAANILNASSSSKMELARRVGIQLEEATVNDLLIPSLSYSNDMVYDVDIIMIILEQFMLQGQSPPTSPQRTKGGFERRRRSRSADNVDFEFQESRRSSSASHSSKLKVAKLVDGYLQEIARDVNLPLSKFIALAEALPDFARLDHDDLYRAIDIYLKTHPDLNKSERKHLCRILDCKKLSMEACMHAAQNELLPLRVVVQVLFFEQARVAMAGGQVTELPNNIKALLATHGDPTKPQASLSTNTTGPAEDQWSVSGLKSPKSKLSTLRMKLAEDDDLDENYTDGIGKSSRVKPLCSVPTRPKRMFSKLWSINRSASEK 626
| Match Name | Stats | Description |
|---|---|---|
| A0A2H5N7R4 | E-Value: 0.000e+0, PID: 71.86 | NPH3 domain-containing protein {ECO:0000259|PROSIT... [more] |
| F6GVL5 | E-Value: 0.000e+0, PID: 70.75 | NPH3 domain-containing protein {ECO:0000259|PROSIT... [more] |
| V4TNR8 | E-Value: 0.000e+0, PID: 71.86 | NPH3 domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A067H3W3 | E-Value: 0.000e+0, PID: 71.70 | NPH3 domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A6J1B2T2 | E-Value: 0.000e+0, PID: 72.22 | (BTB/POZ domain-containing protein At1g67900 {ECO:... [more] |
| A0A068UYD1 | E-Value: 0.000e+0, PID: 71.93 | NPH3 domain-containing protein {ECO:0000259|PROSIT... [more] |
| A0A6P4AD23 | E-Value: 0.000e+0, PID: 71.22 | (BTB/POZ domain-containing protein At1g67900 {ECO:... [more] |
| A0A6P6V3F3 | E-Value: 0.000e+0, PID: 71.61 | (LOW QUALITY PROTEIN: BTB/POZ domain-containing pr... [more] |
| A0A6P6VDM0 | E-Value: 0.000e+0, PID: 71.77 | (BTB/POZ domain-containing protein At1g67900-like ... [more] |
| A0A5B6ZKV4 | E-Value: 0.000e+0, PID: 72.57 | NPH3 domain-containing protein {ECO:0000259|PROSIT... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |