DCAR_025711

Resource Type: 
Polypeptide
Name: 
DCAR_025711
Identifier: 
DCAR_025711.mRNA-protein
Sequence: 
MKMESRCNRRRKCIDGTTAAKLKGKKIETRNTKEDLKQAKRDAVGWWLNS
RPLFDEIGEYQSARSNIIASGLKSQIEASKAEIKSRREEELQVTTRIKEL
NDQLDVTCKYIEQLKLKIQEESRKKSEMKQVLLMRKQTVEALRLTHRALL
FETEASRASAAQALQYIFRSQSDDTTIQLSVEEYNALTRAAEEEISLNNW
RVSVSTEQRLAAQDSRDLAFKKLEALYCPDNDIKHEKTENEIREERSTGS
QDEKKHLPIIEEEEEEDTVFICPARSPQHLVDVTEQSDDTKLVAIRKKPS
VLTQLRVFFEQNWQSFSTASPPQKGRMVTVLSIDGGGIRGIIPGTILAFL
ESKLQELDGPSARIADYFDVISGTSTGGLVTTMLTAPNKENRPLFAAKDI
YKFYKENGPKIFSEDRLKGFLEKIRRLFVSFTGPKYTGEQLGSIVKELLG
DMTLNQTLTDVIIPTFDIKRLYPLIFCSDKARANTSWNAYLYDVCLGTSA
APTYFPAHYFETKHEDGRTRTFDLIDGGIAANNPTQVAITHITNEILNGN
FKIVDDMTPMNTTRMLVISLGTGAAKYEAKYDARKASRWGILNWIFDNGN
TPILDSYGAASQDMVDIHVSSLFQALQAEQNYLRIQEDGLTGDESSVDVA
TVRNMERLSAIGNELLQKPVSRVNLETGMFEAVAGEGTNSDALSGFAKML
SDERKFRLGT*
Sequence Length: 
711
Sequence Checksum: 
f06f0494b1b2dceb0118d62fe578f2a9
View location in JBrowse: 
DCARv2_Chr7:29844316..29847922-
Organism: 
Daucus carota subspecies sativus
Relationship: 
There is 1 relationship.
Relationships
The polypeptide, DCAR_025711, derives from mRNA, DCAR_025711.
Blast Results: 
The following BLAST results are available for this feature:
BLAST of DCAR_025711 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
[Close]
BLAST of DCAR_025711 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5AL80 (Patatin {ECO:0000256|RuleBase:RU361262} (3.1.1.- {ECO:0000256|RuleBase:RU361262}))

HSP 1 Score: 691.034 bits (1782), Expect = 0.000e+0
Identity = 386/719 (53.69%), Postives = 507/719 (70.51%), Query Frame = 0
 
Query:    5 SRCNRRRKCIDGTTAAKLKGKKIETRNTKEDLKQAKRDAVGWWLNSRPLFDEIGEYQSA------RSNI---IASGLKSQIEASKAEIKSRREEELQVTTRIKELNDQLDVTCKYIEQLKLKIQEESRKKSEMKQVLLMRKQTVEALRLTHRALLFETEASRASAAQALQYIFRSQSDDTTIQLSVEEYNALTRAAEEEISLNNWRVSVSTEQRLAAQDSRDLAFKKLEALYCPDNDIKHEKTENEIREERSTGSQDEKKHLPIIEEEEEEDTVFIC------PARSPQHLVD-VTEQSDDTKLVAIRKKPSVLTQLRVFFEQNWQSFSTASPPQKGRMVTVLSIDGGGIRGIIPGTILAFLESKLQELDGPSARIADYFDVISGTSTGGLVTTMLTAPNKENRPLFAAKDIYKFYKENGPKIFSEDRLKGFLEKIRRLFVSFTGPKYTGEQLGSIVKELLGDMTLNQTLTDVIIPTFDIKRLYPLIFCSDKARANTSWNAYLYDVCLGTSAAPTYFPAHYFETKHEDGRTRTFDLIDGGIAANNPTQVAITHITNEILNGNFKIVDDMTPMNTTRMLVISLGTGAAKYEAKYDARKASRWGILNWIFDNGNTPILDSYGAASQDMVDIHVSSLFQALQAEQNYLRIQEDGLTGDESSVDVATVRNMERLSAIGNELLQKPVSRVNLETGMFEAVAGEGTNSDALSGFAKMLSDERKFR 707
            S   + R+    T+A K+     E + TKE+LK+AK DA+  WL+SRPL DE+ + QS+      RS +   + S L+SQ+E +   I++++EEEL+  T I E+   LD   + +EQLK + +E    +S++KQ L +R+Q +   +L  RA+  E++A  ASA +AL  I RS+ D+ T+QL+ EEY ALTR A+EE SL +WRVSVS EQR+ A+ SRD A ++LE  Y  DN ++  K ++EI ++ +T          +IE EE++    +       P   P+     + E S DT L+AI     +LT L+  F Q       A+   KG+MVTVLSIDGGGIRGIIPGT+L  LES LQ+LDGPSARIADYFDVI+GTSTGGLVTTMLTAPNK+NRP++AAKDI  FY E+GPKIF +     F++++  LF + TGP+Y G+ L S+V+++LGD+T+ QTLTDVIIPTFDIK L P+IF +D  +AN S NA L D+C+ TSAAPT+ PAHYFETK  DG+TR+FDLIDGG+AANNPT +AI+HI+ EIL GNF+ + D+ PM++ RMLV+SLGTG AK E KY A  A++WG+LNW++DNG TP+LD +G AS DMVDIHVS+LFQAL  E+NYLRIQ+D LTGD SSVD+AT  NM+RL  IG ELL+KPVSRVNLETG FEAV GEGTN +ALS F  +LS+ERK R
Sbjct:   11 SYLQKARETGSNTSAVKI----TELQKTKEELKRAKDDAMQSWLDSRPLIDELEKLQSSFESAKKRSTMSTSVISELESQLETTNMSIRTKKEEELKDRTMINEITQALDQEREGMEQLKRETEEGRGARSKLKQDLRLRRQKLRKKQLMLRAVRLESQALSASAEEALLNINRSEMDNITVQLTQEEYYALTRRAKEESSLADWRVSVSAEQRIVAKASRDSALRRLEEEYS-DNKLRKRKMKDEIPQDGNT----------MIEAEEQDSRTRVGAQVNNRPTVFPKARAKLIAESSQDTLLIAI----CLLTTLQ--FSQP----QMAAGLTKGKMVTVLSIDGGGIRGIIPGTLLGRLESLLQKLDGPSARIADYFDVIAGTSTGGLVTTMLTAPNKDNRPMYAAKDINSFYLEHGPKIFPQTSRNTFMDRVSSLFGAVTGPEYDGKYLRSLVRQILGDITIKQTLTDVIIPTFDIKHLQPIIFSTDDGKANVSKNALLSDICISTSAAPTFLPAHYFETKDADGKTRSFDLIDGGVAANNPTLMAISHISKEILMGNFQFI-DIEPMDSKRMLVLSLGTGVAKREEKYSAATAAKWGLLNWVYDNGATPLLDIHGDASSDMVDIHVSTLFQALHREKNYLRIQDDTLTGDASSVDIATSENMQRLVQIGEELLEKPVSRVNLETGRFEAVEGEGTNEEALSRFTNLLSEERKHR 703
[Close]
BLAST of DCAR_025711 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7J7IAI3 (Patatin {ECO:0000256|RuleBase:RU361262} (3.1.1.- {ECO:0000256|RuleBase:RU361262}))

HSP 1 Score: 570.852 bits (1470), Expect = 0.000e+0
Identity = 278/419 (66.35%), Postives = 332/419 (79.24%), Query Frame = 0
 
Query:  296 RKKPSV---LTQLRVFFE----QNWQSFSTASPPQKGRMVTVLSIDGGGIRGIIPGTILAFLESKLQELDGPSARIADYFDVISGTSTGGLVTTMLTAPNKENRPLFAAKDIYKFYKENGPKIFSEDRLKGFLEKIRRLFVSFTGPKYTGEQLGSIVKELLGDMTLNQTLTDVIIPTFDIKRLYPLIFCSDKARANTSWNAYLYDVCLGTSAAPTYFPAHYFETKHEDGRTRTFDLIDGGIAANNPTQVAITHITNEILNGNFKIVDDMTPMNTTRMLVISLGTGAAKYEAKYDARKASRWGILNWIFDNGNTPILDSYGAASQDMVDIHVSSLFQALQAEQNYLRIQEDGLTGDESSVDVATVRNMERLSAIGNELLQKPVSRVNLETGMFEAVAGEGTNSDALSGFAKMLSDERKFR 707
            R+K S+   ++ L  FF+    Q   S S A+P  KG+MVTVLSIDGGG+RGIIPGT+LA LESKLQ+LDGP+ARIADYFD ++GTSTGGLVT M+TAPNKENRPL+AAKDI KFY EN PKIF +     F++K    F S TGPKY G+ L S+V++ LG++T+ QTLTDVIIP FDIKRL P+IF SD A+ N S NA L D+C+GTSAAPT+FPAHYFETK+ DG TR+F+LIDGG+AANNPT VA++HI+ +IL G FK V D+ PM + RMLVISLGTGAAK   KY A  AS+WG+LNW++DNG TP+ D YG AS DMVDIHVS+LFQAL +E+NYLRIQ+D LTGD SSVD+AT  NMERL  IG  LL+KPVSRVNLETG FE V GEGTN DAL  FAK+LSDE+K+R
Sbjct:   11 RQKTSLFITISFLATFFQFLQPQLVSSASAAAPFTKGKMVTVLSIDGGGVRGIIPGTLLASLESKLQQLDGPNARIADYFDAVAGTSTGGLVTIMITAPNKENRPLYAAKDINKFYLENSPKIFPQSSRNNFIKKFSSWFGSVTGPKYDGKYLRSLVRDSLGNVTIKQTLTDVIIPAFDIKRLQPIIFSSDNAKENASKNALLSDICIGTSAAPTFFPAHYFETKYGDGTTRSFNLIDGGVAANNPTLVAMSHISKQILLGKFKFV-DIRPMESNRMLVISLGTGAAKQAEKYSAATASKWGLLNWVYDNGATPLFDVYGDASSDMVDIHVSTLFQALHSEKNYLRIQDDTLTGDASSVDIATKENMERLVEIGEALLKKPVSRVNLETGKFETVQGEGTNEDALGRFAKLLSDEKKYR 428
[Close]
BLAST of DCAR_025711 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A4S4EVZ2 (Patatin {ECO:0000256|RuleBase:RU361262} (3.1.1.- {ECO:0000256|RuleBase:RU361262}))

HSP 1 Score: 568.155 bits (1463), Expect = 0.000e+0
Identity = 278/419 (66.35%), Postives = 331/419 (79.00%), Query Frame = 0
 
Query:  296 RKKPSV---LTQLRVFFE----QNWQSFSTASPPQKGRMVTVLSIDGGGIRGIIPGTILAFLESKLQELDGPSARIADYFDVISGTSTGGLVTTMLTAPNKENRPLFAAKDIYKFYKENGPKIFSEDRLKGFLEKIRRLFVSFTGPKYTGEQLGSIVKELLGDMTLNQTLTDVIIPTFDIKRLYPLIFCSDKARANTSWNAYLYDVCLGTSAAPTYFPAHYFETKHEDGRTRTFDLIDGGIAANNPTQVAITHITNEILNGNFKIVDDMTPMNTTRMLVISLGTGAAKYEAKYDARKASRWGILNWIFDNGNTPILDSYGAASQDMVDIHVSSLFQALQAEQNYLRIQEDGLTGDESSVDVATVRNMERLSAIGNELLQKPVSRVNLETGMFEAVAGEGTNSDALSGFAKMLSDERKFR 707
            R+K S+   ++ L  FF+    Q   S S A+P  KG+MVTVLSIDGGG+RGIIPGT+LA LESKLQ+LDGP+ARIADYFD ++GTSTGGLVT M+TAPNKENRPL+AAKDI KFY EN PKIF +     F++K    F S TGPKY G+ L S+V++ LG++T+ QTLTDVIIP FDIKRL P+IF SD A+ N S NA L D+C+GTSAAPT+FPAHYFETK+ DG TR+F+LIDGG+AANNPT VA++HI+ +IL G FK V D+ PM + RMLVISLGTGAAK   KY A  AS+WG+LNW++DNG TP+ D YG AS DMVDIHVS+LFQAL +E+NYLRIQ+D LTGD SSVD+AT  NMERL  IG  LL+KPVSRVNLETG FE V GEGTN DAL  FAK+LSDE+K R
Sbjct:   11 RQKASLFITISFLATFFQFLQPQLVSSASAAAPFTKGKMVTVLSIDGGGVRGIIPGTLLASLESKLQQLDGPNARIADYFDAVAGTSTGGLVTIMITAPNKENRPLYAAKDINKFYLENSPKIFPQSSRNNFIKKFSSWFGSVTGPKYDGKYLRSLVRDSLGNVTIKQTLTDVIIPAFDIKRLQPIIFSSDNAKENASKNALLSDICIGTSAAPTFFPAHYFETKYGDGTTRSFNLIDGGVAANNPTLVAMSHISKQILLGKFKFV-DIRPMESNRMLVISLGTGAAKQAEKYSAATASKWGLLNWVYDNGATPLFDVYGDASSDMVDIHVSTLFQALHSEKNYLRIQDDTLTGDASSVDIATKENMERLVEIGEALLKKPVSRVNLETGKFETVQGEGTNEDALGRFAKLLSDEKKNR 428
[Close]
BLAST of DCAR_025711 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834GI00 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7135544.1}))

HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0
Identity = 254/384 (66.15%), Postives = 316/384 (82.29%), Query Frame = 0
 
Query:  324 KGRMVTVLSIDGGGIRGIIPGTILAFLESKLQELDGPSARIADYFDVISGTSTGGLVTTMLTAPNKENRPLFAAKDIYKFYKENGPKIFSEDRLKGFLEKIRRLFVSFTGPKYTGEQLGSIVKELLGDMTLNQTLTDVIIPTFDIKRLYPLIFCSDKARANTSWNAYLYDVCLGTSAAPTYFPAHYFETKHEDGRTRTFDLIDGGIAANNPTQVAITHITNEILNGNFKIVDDMTPMNTTRMLVISLGTGAAKYEAKYDARKASRWGILNWIFDNGNTPILDSYGAASQDMVDIHVSSLFQALQAEQNYLRIQEDGLTGDESSVDVATVRNMERLSAIGNELLQKPVSRVNLETGMFEAVAGEGTNSDALSGFAKMLSDERKFR 707
            +G+M TVLSIDGGG+RGIIPGT+L FLESKLQELDG +AR+ADYFDVI+GTSTGGLVTTM+TAPNK+NRP++AAKDI KFY EN PKIF +     F+ K++ L+   TGPKY G+ L S+ KELLG++T+NQTLTDVIIPTFDIKRL P+IF ++  + N S NA L D+CLGTSAAPT+ PAHYFETK  DG+TR+FDLIDGG+AANNPT +AI+HI+ +IL G FK+V DM PM +++MLV+SLGTG  K E KY A +AS WG+L+W++++G TPI+D Y  AS DMVDIHVS+LFQ+L++E+NYLRIQ+D LTGD SS D+AT  N+++L  IGNELL+KPVSRVNLETG F+ V GEGTN  AL  FA++LS+E K R
Sbjct:   29 QGKMATVLSIDGGGVRGIIPGTLLGFLESKLQELDGANARLADYFDVIAGTSTGGLVTTMITAPNKDNRPMYAAKDINKFYLENCPKIFPQSSRDNFITKVKSLYGKVTGPKYDGKYLSSLTKELLGNITINQTLTDVIIPTFDIKRLQPVIFSTNDGKENVSKNALLSDICLGTSAAPTFLPAHYFETKDGDGKTRSFDLIDGGVAANNPTLMAISHISKQILMGKFKVV-DMKPMESSKMLVLSLGTGTPKLEEKYSAVEASNWGLLSWVYEDGATPIVDVYSDASSDMVDIHVSTLFQSLRSEKNYLRIQDDTLTGDASSADIATTENLQKLVQIGNELLKKPVSRVNLETGRFDEVQGEGTNEAALIRFAELLSEENKLR 411
[Close]
BLAST of DCAR_025711 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LH09 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7135535.1}))

HSP 1 Score: 541.576 bits (1394), Expect = 0.000e+0
Identity = 253/384 (65.89%), Postives = 314/384 (81.77%), Query Frame = 0
 
Query:  324 KGRMVTVLSIDGGGIRGIIPGTILAFLESKLQELDGPSARIADYFDVISGTSTGGLVTTMLTAPNKENRPLFAAKDIYKFYKENGPKIFSEDRLKGFLEKIRRLFVSFTGPKYTGEQLGSIVKELLGDMTLNQTLTDVIIPTFDIKRLYPLIFCSDKARANTSWNAYLYDVCLGTSAAPTYFPAHYFETKHEDGRTRTFDLIDGGIAANNPTQVAITHITNEILNGNFKIVDDMTPMNTTRMLVISLGTGAAKYEAKYDARKASRWGILNWIFDNGNTPILDSYGAASQDMVDIHVSSLFQALQAEQNYLRIQEDGLTGDESSVDVATVRNMERLSAIGNELLQKPVSRVNLETGMFEAVAGEGTNSDALSGFAKMLSDERKFR 707
            +G+M TVLSIDGGG+RGIIPGT+L FLESKLQELDG +AR+ADYFDVI+GTSTGGLVTTM+TAPNK+NRP++AAKDI KFY EN PKIF +     F+ K++ LF   TGPKY G+ L S+ KE+LG +T+NQTLTDVIIPTFDIKRL P+IF ++  + N   NA L D+CLG+SAAPT+ PAHYFETK  DG+TR+FDLIDGG+AANNPT +AITHI+  IL G FK+V DM PM +++MLV+SLGTG  K E KY A +AS+WG+L+W++++G TPI+D+Y  AS DMVDIHVS+LFQ+L++E+NYLRIQ+D LTGD S  D+AT  N+++L  IGNELL+KPVSRVNLETG F+ V GEGTN  AL  FAK+LS+E K R
Sbjct:   29 QGKMATVLSIDGGGVRGIIPGTLLRFLESKLQELDGANARLADYFDVIAGTSTGGLVTTMITAPNKDNRPMYAAKDINKFYLENCPKIFPQSSRDNFITKVKSLFGKVTGPKYDGKYLSSLTKEILGHITINQTLTDVIIPTFDIKRLQPVIFSTNDGKENVLKNALLSDICLGSSAAPTFLPAHYFETKDGDGKTRSFDLIDGGVAANNPTLMAITHISKRILMGKFKVV-DMKPMESSKMLVLSLGTGTPKLEEKYSAVEASKWGLLSWVYEDGATPIVDAYSDASSDMVDIHVSTLFQSLRSEKNYLRIQDDTLTGDASLADIATTENLQKLVQIGNELLKKPVSRVNLETGRFDEVRGEGTNEAALIRFAKLLSEEHKLR 411
[Close]
BLAST of DCAR_025711 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B7BX65 (Patatin {ECO:0000256|RuleBase:RU361262} (3.1.1.- {ECO:0000256|RuleBase:RU361262}))

HSP 1 Score: 533.872 bits (1374), Expect = 0.000e+0
Identity = 276/418 (66.03%), Postives = 333/418 (79.67%), Query Frame = 0
 
Query:  290 TKLVAIRKKPSVLTQLRVFFEQNWQSFSTASPPQKGRMVTVLSIDGGGIRGIIPGTILAFLESKLQELDGPSARIADYFDVISGTSTGGLVTTMLTAPNKENRPLFAAKDIYKFYKENGPKIFSEDRLKGFLEKIRRLFVSFTGPKYTGEQLGSIVKELLGDMTLNQTLTDVIIPTFDIKRLYPLIFCSDKARANTSWNAYLYDVCLGTSAAPTYFPAHYFETKHEDGRTRTFDLIDGGIAANNPTQVAITHITNEILNGNFKIVDDMTPMNTTRMLVISLGTGAAKYEAKYDARKASRWGILNWIFDNGNTPILDSYGAASQDMVDIHVSSLFQALQAEQNYLRIQEDGLTGDESSVDVATVRNMERLSAIGNELLQKPVSRVNLETGMFEAVAGEGTNSDALSGFAKMLSDERKFR 707
            T L+AI      LT L+  F Q   +F       KG+MVTVLSIDGGGIRGIIPGT+LA LESKLQ+LDGPSARIADYFDV++GTSTGGLVTTML APNK+NRP++AAKDI  FY ++GPKIF +     F++K+  LF + TGPKY G+ L S++++LLGD+T+ QTLTDVIIPTFDIK L P+IF +D A+ N S NA L D+C+ TSAAPT+ PAHYFETK  +G+TR+FDLIDGG+AANNPT +AI+HI+ EIL GNF+ V D+ PM++ RMLV+SLGTGAAK E KY A  AS+WG+LNW++DNG TP+LD YG AS DMVDIHVS+LFQAL +++NYLRIQ+D LTG+ SSVD+AT  NM+RL  IG ELL K VSRVNLETG FEAV GEGTN  ALS FAK+LSDERK R
Sbjct:    5 TLLIAI----CFLTTLQ--FSQPQMAFGLT----KGKMVTVLSIDGGGIRGIIPGTLLAHLESKLQKLDGPSARIADYFDVVAGTSTGGLVTTMLAAPNKDNRPIYAAKDINSFYLDHGPKIFPQSSRNNFMDKVSGLFGAVTGPKYDGKYLRSLIRQLLGDITIKQTLTDVIIPTFDIKHLQPIIFSTDDAKVNVSKNALLSDICISTSAAPTFLPAHYFETKDAEGKTRSFDLIDGGVAANNPTLMAISHISKEILMGNFQFV-DIEPMDSKRMLVLSLGTGAAKQEEKYSAATASKWGLLNWVYDNGATPLLDIYGDASSDMVDIHVSTLFQALHSQKNYLRIQDDTLTGEASSVDIATNENMQRLVQIGEELLGKAVSRVNLETGRFEAVEGEGTNEAALSRFAKLLSDERKLR 411
[Close]
BLAST of DCAR_025711 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5APP5 (Patatin {ECO:0000256|RuleBase:RU361262} (3.1.1.- {ECO:0000256|RuleBase:RU361262}))

HSP 1 Score: 528.865 bits (1361), Expect = 0.000e+0
Identity = 264/384 (68.75%), Postives = 317/384 (82.55%), Query Frame = 0
 
Query:  324 KGRMVTVLSIDGGGIRGIIPGTILAFLESKLQELDGPSARIADYFDVISGTSTGGLVTTMLTAPNKENRPLFAAKDIYKFYKENGPKIFSEDRLKGFLEKIRRLFVSFTGPKYTGEQLGSIVKELLGDMTLNQTLTDVIIPTFDIKRLYPLIFCSDKARANTSWNAYLYDVCLGTSAAPTYFPAHYFETKHEDGRTRTFDLIDGGIAANNPTQVAITHITNEILNGNFKIVDDMTPMNTTRMLVISLGTGAAKYEAKYDARKASRWGILNWIFDNGNTPILDSYGAASQDMVDIHVSSLFQALQAEQNYLRIQEDGLTGDESSVDVATVRNMERLSAIGNELLQKPVSRVNLETGMFEAVAGEGTNSDALSGFAKMLSDERKFR 707
            KG+MVTVLSIDGGGIRGIIPGT+L  LES LQ+LDGPSARIADYFDVI+GTSTGGLVTTMLTAPNK+NRP++AAKDI  FY E+GPKIF +     F++++  LF + TGP+Y G+ L S+V+++LGD+T+ QTLTDVIIPTFDIK L P+IF +D  +AN S NA L D+C+ TSAAPT+ PAHYFETK  DG+TR FDLIDGG+AANNPT +AI+HI+ EIL GNF+ + D+ PM++ RMLV+SLGTGAAK E KY A  A++WG+LNW++DNG TP+LD YG AS DMVDIHVS+LFQAL  E+NYLRIQ+D LTGD SSVD+AT  NM+RL  IG ELL+KPVSRVNLETG FEAV GEGTN  ALS F  +LS+ERK R
Sbjct:    7 KGKMVTVLSIDGGGIRGIIPGTLLGRLESLLQKLDGPSARIADYFDVIAGTSTGGLVTTMLTAPNKDNRPMYAAKDINSFYLEHGPKIFPQTSRNSFMDRVSSLFGAVTGPEYDGKYLRSLVRQILGDITIKQTLTDVIIPTFDIKHLQPIIFSTDDGKANVSKNALLSDICISTSAAPTFLPAHYFETKDADGKTRNFDLIDGGVAANNPTLMAISHISKEILMGNFQFI-DIEPMDSKRMLVLSLGTGAAKREEKYSAATAAKWGLLNWVYDNGATPLLDIYGDASSDMVDIHVSTLFQALHCEKNYLRIQDDTLTGDASSVDIATSENMQRLVQIGEELLEKPVSRVNLETGRFEAVEGEGTNEAALSRFTNLLSEERKHR 389
[Close]
BLAST of DCAR_025711 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZN29 (Patatin {ECO:0000256|RuleBase:RU361262} (3.1.1.- {ECO:0000256|RuleBase:RU361262}))

HSP 1 Score: 521.931 bits (1343), Expect = 5.955e-179
Identity = 260/384 (67.71%), Postives = 320/384 (83.33%), Query Frame = 0
 
Query:  324 KGRMVTVLSIDGGGIRGIIPGTILAFLESKLQELDGPSARIADYFDVISGTSTGGLVTTMLTAPNKENRPLFAAKDIYKFYKENGPKIFSEDRLKGFLEKIRRLFVSFTGPKYTGEQLGSIVKELLGDMTLNQTLTDVIIPTFDIKRLYPLIFCSDKARANTSWNAYLYDVCLGTSAAPTYFPAHYFETKHEDGRTRTFDLIDGGIAANNPTQVAITHITNEILNGNFKIVDDMTPMNTTRMLVISLGTGAAKYEAKYDARKASRWGILNWIFDNGNTPILDSYGAASQDMVDIHVSSLFQALQAEQNYLRIQEDGLTGDESSVDVATVRNMERLSAIGNELLQKPVSRVNLETGMFEAVAGEGTNSDALSGFAKMLSDERKFR 707
            KG+MVTVLSIDGGGIRGIIPGT+LA LESKLQELDGPSARIADYFDVI+GTSTGGLVTTMLTAPN+ NRP++AAKDI  FY ++ PKIF +     F++ +  LF + TGPKY G+ + S+ KELLG++T+ QTLT+VIIPTFDIK L P+IF ++ A+A+ S NA L D+C+ TSAAPT+ PAHYFETK  +G+TR+FDL+DGG+AANNPT +AI+HI+ EIL GNF+ V D  P+++ RMLV+SLGTGAAK E KY+A  AS+WG+LNW++DNG+TP+LD YG AS DMVDIHVS+LFQAL +++NYLRIQ+D L GD SSVD+AT  N+E+L  IG  +L+KPVSRVNLETGMFEAV GEGTN  AL  FAK+LSDER+FR
Sbjct:    7 KGKMVTVLSIDGGGIRGIIPGTLLAHLESKLQELDGPSARIADYFDVIAGTSTGGLVTTMLTAPNENNRPMYAAKDINNFYLQHTPKIFPQRSRNNFMDTLSSLFGAVTGPKYDGKYIRSLTKELLGNLTIKQTLTNVIIPTFDIKHLQPIIFSTNDAKADVSKNALLSDICISTSAAPTFLPAHYFETKDANGKTRSFDLVDGGVAANNPTLMAISHISKEILMGNFESV-DFEPVDSKRMLVLSLGTGAAKREEKYNAATASKWGLLNWVYDNGSTPLLDIYGDASSDMVDIHVSTLFQALHSQKNYLRIQDDTLPGDTSSVDIATKENLEKLVEIGEAMLKKPVSRVNLETGMFEAVDGEGTNEAALGRFAKLLSDERRFR 389
[Close]
BLAST of DCAR_025711 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: M1AME5 (Patatin {ECO:0000256|RuleBase:RU361262} (3.1.1.- {ECO:0000256|RuleBase:RU361262}))

HSP 1 Score: 520.39 bits (1339), Expect = 5.943e-178
Identity = 246/418 (58.85%), Postives = 320/418 (76.56%), Query Frame = 0
 
Query:  291 KLVAIRKKPSVLTQLRVFFEQNWQSFSTASPPQKGRMVTVLSIDGGGIRGIIPGTILAFLESKLQELDGPSARIADYFDVISGTSTGGLVTTMLTAPNKENRPLFAAKDIYKFYKENGPKIFSEDRLKGFLEKIRRLFVSFTGPKYTGEQLGSIVKELLGDMTLNQTLTDVIIPTFDIKRLYPLIFCSDKARANTSWNAYLYDVCLGTSAAPTYFPAHYFETKHEDGRTRTFDLIDGGIAANNPTQVAITHITNEILNGNFKIVDDMTPMNTTRMLVISLGTGAAKYEAKYDARKASRWGILNWIFDNGNTPILDSYGAASQDMVDIHVSSLFQALQAEQNYLRIQEDGLTGDESSVDVATVRNMERLSAIGNELLQKPVSRVNLETGMFEAVAGEGTNSDALSGFAKMLSDERKFRL 708
            ++V I    ++   L+V      Q+    S   KG+ VT+LSIDGGGIRG+IPGT+LAFLESKLQELDGP+AR+ADYFDV++GTSTGGLVTTMLTAPNK+NRPL+ AKDI  FY E+GP+IF + R   F+ ++  LF    GPKY G  L +I+  +LG++T+ QTLT+ +IPTFDIKRL P+IF +  A+AN S NA L DVCL TSAAPTYFP H FETK   G+ RTFDL+DGG+AANNPT +AIT+++ +I+ GNF+  + M  M+  +MLV+SLGTG  K E KY+A  ASRWG+L W+++NG TP++D YG AS DMVDIHVS++FQ L +E+NY+RIQ+D LTG+ +S+D+AT +NME L  IGN+LL+KP+SRVNLETG +E V GEGTN  A+  FA++LS+ERK R+
Sbjct:    3 RMVLIAAAMTLFVTLQVL-----QAPLMVSAATKGKTVTILSIDGGGIRGVIPGTLLAFLESKLQELDGPNARLADYFDVVAGTSTGGLVTTMLTAPNKDNRPLYQAKDISNFYMEHGPQIFPQSRRNSFVRRVTNLF---GGPKYDGIYLRTIINSILGNITMKQTLTNTVIPTFDIKRLQPIIFSTADAKANISKNAQLSDVCLSTSAAPTYFPVHSFETKDAQGKPRTFDLVDGGVAANNPTLMAITYVSKQIMTGNFQ-YEGMKNMDCKKMLVLSLGTGIGKQEEKYNATVASRWGMLGWVYNNGATPLIDIYGDASADMVDIHVSTMFQTLGSEKNYIRIQDDNLTGEAASMDIATTKNMETLVQIGNDLLKKPISRVNLETGRYEPVVGEGTNEAAIVRFAQLLSEERKLRI 411
[Close]
BLAST of DCAR_025711 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A834LH62 ((Uncharacterized protein {ECO:0000313|EMBL:KAF7135700.1}))

HSP 1 Score: 518.85 bits (1335), Expect = 2.996e-177
Identity = 262/388 (67.53%), Postives = 315/388 (81.19%), Query Frame = 0
 
Query:  319 ASPPQKGRMVTVLSIDGGGIRGIIPGTILAFLESKLQELDGPSARIADYFDVISGTSTGGLVTTMLTAPNKENRPLFAAKDIYKFYKENGPKIFSEDRLKGFLEKIRRLFVSFTGPKYTGEQLGSIVKELLGDMTLNQTLTDVIIPTFDIKRLYPLIFCSDKARANTSWNAYLYDVCLGTSAAPTYFPAHYFETKHEDGRTRTFDLIDGGIAANNPTQVAITHITNEILNGNFKIVDDMTPMNTTRMLVISLGTGAAKYEAKYDARKASRWGILNWIFDNGNTPILDSYGAASQDMVDIHVSSLFQALQAEQNYLRIQEDGLTGDESSVDVATVRNMERLSAIGNELLQKPVSRVNLETGMFEAVAGEGTNSDALSGFAKMLSDERKF 706
            AS   KG+M TVLSIDGGGIRGIIPGT+L FLESKLQELDG + R+ADYFDVI+GTSTGGLVT MLTAPNK+NRP++AAKDI  FY EN PKIF +     F+ K+  LF + TGP+Y G+ L S+ KELLG++T+NQTLTDVIIPTFDIKRL P+IF +D  + N S NA L D+CLGTSAAPT+ PAHYFETK  +G+TR+FDLIDGG+AANNPT +AITHI+ EIL G FK V DM PM  +RMLV+SLGTGA K E KY A +AS+WG+L+W++DNG TP++D YG AS DMVDIHVS+LFQ+L  E+NYLRIQ+D LTGD SSVD+AT  N+++L  IGNELL+KPVSRVNLETG F+ V GEGTN  AL  FAK+LS+E++ 
Sbjct:   29 ASGLTKGKMATVLSIDGGGIRGIIPGTLLGFLESKLQELDGANVRLADYFDVIAGTSTGGLVTAMLTAPNKDNRPMYAAKDINSFYLENCPKIFPQSSRNNFIAKVTSLFGAVTGPEYDGKYLRSLTKELLGNITINQTLTDVIIPTFDIKRLQPVIFSTDDGKENVSKNALLSDICLGTSAAPTFLPAHYFETKDGNGKTRSFDLIDGGVAANNPTLMAITHISKEILMGKFKFV-DMKPMEGSRMLVLSLGTGAPKLEEKYSAAEASKWGLLSWVYDNGATPMVDIYGDASSDMVDIHVSTLFQSLHCEKNYLRIQDDTLTGDASSVDIATTENLQKLVQIGNELLKKPVSRVNLETGRFDEVQGEGTNEAALIRFAKLLSEEKRL 415
Match NameStatsDescription
A0A5J5AL80E-Value: 0.000e+0, PID: 53.69Patatin {ECO:0000256|RuleBase:RU361262} (3.1.1.- {... [more]
A0A7J7IAI3E-Value: 0.000e+0, PID: 66.35Patatin {ECO:0000256|RuleBase:RU361262} (3.1.1.- {... [more]
A0A4S4EVZ2E-Value: 0.000e+0, PID: 66.35Patatin {ECO:0000256|RuleBase:RU361262} (3.1.1.- {... [more]
A0A834GI00E-Value: 0.000e+0, PID: 66.15(Uncharacterized protein {ECO:0000313|EMBL:KAF7135... [more]
A0A834LH09E-Value: 0.000e+0, PID: 65.89(Uncharacterized protein {ECO:0000313|EMBL:KAF7135... [more]
A0A5B7BX65E-Value: 0.000e+0, PID: 66.03Patatin {ECO:0000256|RuleBase:RU361262} (3.1.1.- {... [more]
A0A5J5APP5E-Value: 0.000e+0, PID: 68.75Patatin {ECO:0000256|RuleBase:RU361262} (3.1.1.- {... [more]
A0A5B6ZN29E-Value: 5.955e-179, PID: 67.71Patatin {ECO:0000256|RuleBase:RU361262} (3.1.1.- {... [more]
M1AME5E-Value: 5.943e-178, PID: 58.85Patatin {ECO:0000256|RuleBase:RU361262} (3.1.1.- {... [more]
A0A834LH62E-Value: 2.996e-177, PID: 67.53(Uncharacterized protein {ECO:0000313|EMBL:KAF7135... [more]

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Analysis: 
NameDescription
Carrot Genome Assembly DCARv2

An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4.

There are a few different naming schemes for this assembly. First there is the
Authors' original naming scheme: Sequences with DCARv2 prefix are the original assembly as submitted to NCBI. These are labelled DCARv2_Chr1 through DCARv2_Chr9 for the chromosome pseudomolecules, DCARv2_MT and DCARv2_PT for the organellar assemblies, DCARv2_B1 and up for unincorporated superscaffolds, DCARv2_S26.1 and up for unincorporated scaffolds, and DCARv2_C10542132 and up for unincorporated contigs. A file with sequences using this naming scheme can be downloaded from the File: link below.
These sequences can be viewed in JBrowse here.

Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0

LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926.

Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence.

RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records.

The NCBI Sequence report lists the correspondences between the various naming methods

Link to the LNRQ01000000.1 master record at NCBI

Raw Reads: Link to SRA accessions used for the genome assembly

This genome is available in the CarrotOmics Blast Search
DCAR peptide blastp to SwissProt and TrEMBL without DCAR

This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions.
DCAR V1.0 Gene Prediction

For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins.

Data from this analysis can be viewed in JBrowse here.