Resource Type:
Polypeptide
Name:
DCAR_025748
Identifier:
DCAR_025748.mRNA-protein
Sequence:
MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGS
ISNSSSSAVLIEDGSDDEDDDGVGKKRSSRIFGFSVTDEPAVVTRQFFPV
NESSESVEGGGGANTAAGFPRAHWVGVKFCHSEPVGSGEKAADFTHPLKK
SRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAY
DRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRG
SSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKC
NGKEAVTNFDPSIYQNELNPTESSSSQPADHNLDLSLGGSASKQREHGIG
DGRATNQHTSSTQFEWKDREIRPKPSMQQEFIRNKFDSGRRDGLNQMETL
QLSSNTNLQSSSSFRPSEMHRYEQFMKASEPQNQLTSSSNGGRNGGNERG
ESYMYNLNHGHHQWRTSSPQVMAAAAASSGFPQVMERPKNWLQKNGFQTV
MRPS*
Sequence Length:
505
Sequence Checksum:
8b2f496b7f75373a6c19cc6dc169d4e4
View location in JBrowse:
Organism:
Relationship:
| Relationships |
|---|
| The polypeptide, DCAR_025748, derives from mRNA, DCAR_025748. |
Blast Results:
The following BLAST results are available for this feature:
BLAST of DCAR_025748 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
Analysis Date: 2021-12-09
Analysis Name: DCAR peptide blastp to SwissProt and TrEMBL without DCAR
Total hits: 20
BLAST of DCAR_025748 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A438FKK4 ((Floral homeotic protein APETALA 2 {ECO:0000313|EMBL:RVW60529.1}))
HSP 1 Score: 567.385 bits (1461), Expect = 0.000e+0
Identity = 340/537 (63.31%), Postives = 389/537 (72.44%), Query Frame = 0
Match: A0A438FKK4 ((Floral homeotic protein APETALA 2 {ECO:0000313|EMBL:RVW60529.1}))
HSP 1 Score: 567.385 bits (1461), Expect = 0.000e+0
Identity = 340/537 (63.31%), Postives = 389/537 (72.44%), Query Frame = 0
Query: 1 MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGSISNSSSS--AVLIEDGSDDEDDDGVGKKRSSRIFGFSVTDE---PAVVTRQFFPVNESSESVEGGGGANTAAGFPRAHWVGVKFCHSEPVGSG----EKAADFTHPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKCNGKEAVTNFDPSIYQNELNPTESSSSQPADHNLDLSLGGSASKQREHGIGDGR---ATNQHTSSTQFE--WKDREIRPKPSMQQEFIRNKFDSGRRDGLNQMETLQLSSNTNLQSSSSFRPSEMHRYEQFMKASEPQN---------------QLTSSSNGGR---NGGNERGESYMYNLNHGHHQWRTSSPQVMAAAAASSGFPQVMERP-KNWLQKNGFQTVMRPS 504
MW+LNDSP +R D D+ EGCS+ + +D KGKRVGS+SN +SS AV+IEDGSD+ED + +KRSS+IFGFSVT E VTRQFFP+ ES GGA A FPRAHWVGVKFC SEP+ + K+ + + PLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSL DYE+DLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFD EIEAARAYDKAAIKCNGKEAVTNFDPSIY+NELN SS ADHNLDLSLGGSASKQ +GD +QH+ FE W+ R RPK ++QQE ++ D+ RR+G N+MET+QL S+T+LQS ++ +P EM+RY QF +A E Q Q SSSNGGR NGG+ +L H QW++ PQ+ A AAASSGFP M RP + W QKNGF +++RPS
Sbjct: 1 MWDLNDSPDQRRD----------DESEGCSSQKTSVDS--IDDKGKRVGSVSNENSSSSAVVIEDGSDEEDGERGQRKRSSKIFGFSVTHEDEGEPPVTRQFFPMEESEMGTTSCGGA---AAFPRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELN----SSGNAADHNLDLSLGGSASKQNNLELGDDSQVVTMDQHSVGMSFEADWRSRGFRPKFNLQQEACKSDGDALRRNGYNEMETMQLLSHTHLQSPAALKPGEMYRYGQFRRAGETQMLHILPPQLSSPNYQIQFPSSSNGGRIAVNGGD-------LSLATNHQQWQSGPPQLFATAAASSGFPPQMIRPNQQWPQKNGFHSLIRPS 511
BLAST of DCAR_025748 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: C1KBJ2 ((AP2 {ECO:0000313|EMBL:QOE83970.1}) (Transcription factor APETALA2 {ECO:0000313|EMBL:ACO52508.1}))
HSP 1 Score: 567.385 bits (1461), Expect = 0.000e+0
Identity = 340/537 (63.31%), Postives = 389/537 (72.44%), Query Frame = 0
Match: C1KBJ2 ((AP2 {ECO:0000313|EMBL:QOE83970.1}) (Transcription factor APETALA2 {ECO:0000313|EMBL:ACO52508.1}))
HSP 1 Score: 567.385 bits (1461), Expect = 0.000e+0
Identity = 340/537 (63.31%), Postives = 389/537 (72.44%), Query Frame = 0
Query: 1 MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGSISNSSSS--AVLIEDGSDDEDDDGVGKKRSSRIFGFSVTDE---PAVVTRQFFPVNESSESVEGGGGANTAAGFPRAHWVGVKFCHSEPVGSG----EKAADFTHPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKCNGKEAVTNFDPSIYQNELNPTESSSSQPADHNLDLSLGGSASKQREHGIGDGR---ATNQHTSSTQFE--WKDREIRPKPSMQQEFIRNKFDSGRRDGLNQMETLQLSSNTNLQSSSSFRPSEMHRYEQFMKASEPQN---------------QLTSSSNGGR---NGGNERGESYMYNLNHGHHQWRTSSPQVMAAAAASSGFPQVMERP-KNWLQKNGFQTVMRPS 504
MW+LNDSP +R D D+ EGCS+ + +D KGKRVGS+SN +SS AV+IEDGSD+ED + +KRSS+IFGFSVT E VTRQFFP+ ES GGA A FPRAHWVGVKFC SEP+ + K+ + + PLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSL DYE+DLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFD EIEAARAYDKAAIKCNGKEAVTNFDPSIY+NELN SS ADHNLDLSLGGSASKQ +GD +QH+ FE W+ R RPK ++QQE ++ D+ RR+G N+MET+QL S+T+LQS ++ +P EM+RY QF +A E Q Q SSSNGGR NGG+ +L H QW++ PQ+ A AAASSGFP M RP + W QKNGF +++RPS
Sbjct: 1 MWDLNDSPDQRRD----------DESEGCSSQKTSVDS--IDDKGKRVGSVSNENSSSSAVVIEDGSDEEDGERGQRKRSSKIFGFSVTHEDEGEPPVTRQFFPMEESEMGTTSCGGA---AAFPRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELN----SSGNAADHNLDLSLGGSASKQNNLELGDDSQVVTMDQHSVGMSFEADWRSRGFRPKFNLQQEACKSDGDALRRNGYNEMETMQLLSHTHLQSPAALKPGEMYRYGQFRRAGETQMLHILPPQLSSPNYQIQFPSSSNGGRIAVNGGD-------LSLATNHQQWQSGPPQLFATAAASSGFPPQMIRPNQQWPQKNGFHSLIRPS 511
BLAST of DCAR_025748 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: F6H4H7 ((Uncharacterized protein {ECO:0000313|EMBL:CCB47049.1}))
HSP 1 Score: 559.681 bits (1441), Expect = 0.000e+0
Identity = 339/537 (63.13%), Postives = 386/537 (71.88%), Query Frame = 0
Match: F6H4H7 ((Uncharacterized protein {ECO:0000313|EMBL:CCB47049.1}))
HSP 1 Score: 559.681 bits (1441), Expect = 0.000e+0
Identity = 339/537 (63.13%), Postives = 386/537 (71.88%), Query Frame = 0
Query: 1 MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGSISNSSSS--AVLIEDGSDDEDDDGVGKKRSSRIFGFSVTDE---PAVVTRQFFPVNESSESVEGGGGANTAAGFPRAHWVGVKFCHSEPVGSG----EKAADFTHPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKCNGKEAVTNFDPSIYQNELNPTESSSSQPADHNLDLSLGGSASKQREHGIGDGR---ATNQHTSSTQFE--WKDREIRPKPSMQQEFIRNKFDSGRRDGLNQMETLQLSSNTNLQSSSSFRPSEMHRYEQFMKASEPQN---------------QLTSSSNGGR---NGGNERGESYMYNLNHGHHQWRTSSPQVMAAAAASSGFPQVMERP-KNWLQKNGFQTVMRPS 504
MW+LNDSP +R D D+ EGCS+ + +D KGKRVGS+SN +SS AV+IEDGSD+ED + +KRSS+IFGFSVT E VTRQFFP+ ES GGA A FPRAHWVGVKFC SEP+ + K+ + + PLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSL DYE+DLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFD EIEAARAYDKAAIKCNGKEAVTNFDPSIY+NELN SS ADHNLDLSLGGSASKQ +GD +QH+ FE W+ R RPK QE ++ D+ RR+G N+MET+QL S+T+LQS ++ +P EM+RY QF +A E Q Q SSSNGGR NGG+ +L H QW++ PQ+ A AAASSGFP M RP + W QKNGF +++RPS
Sbjct: 1 MWDLNDSPDQRRD----------DESEGCSSQKTSVDS--IDDKGKRVGSVSNENSSSSAVVIEDGSDEEDGERGQRKRSSKIFGFSVTHEDEGEPPVTRQFFPMEESEMGTTSCGGA---AAFPRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELN----SSGNAADHNLDLSLGGSASKQNNLELGDDSQVVTMDQHSVGMSFEADWRSRGFRPK----QEACKSDGDALRRNGYNEMETMQLLSHTHLQSPAALKPGEMYRYGQFRRAGETQMLHILPPQLSSPNYQIQFPSSSNGGRIAVNGGD-------LSLATNHQQWQSGPPQLFATAAASSGFPPQMIRPNQQWPQKNGFHSLIRPS 507
BLAST of DCAR_025748 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5J5BZ25 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8547120.1}))
HSP 1 Score: 556.214 bits (1432), Expect = 0.000e+0
Identity = 343/537 (63.87%), Postives = 398/537 (74.12%), Query Frame = 0
Match: A0A5J5BZ25 ((Uncharacterized protein {ECO:0000313|EMBL:KAA8547120.1}))
HSP 1 Score: 556.214 bits (1432), Expect = 0.000e+0
Identity = 343/537 (63.87%), Postives = 398/537 (74.12%), Query Frame = 0
Query: 1 MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGSISNSSSSAVLIEDGSDDEDDDGVGKKRSSRIFGFSVT--------DEPAVVTRQFFPVNESSESVEGGGGANT--AAGFPRAHWVGVKFCHSEPVGSGE-KAADFTHPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKCNGKEAVTNFDPSIYQNELN-PTESSSSQPADHNLDLSLGGSASKQ--REHGIGDGR--ATNQHTSSTQFE--WKDREIRPKPSMQQEFIRNKFDSGRRDGLNQMETLQLSSNTNLQSSSSFRPSEMHRYEQFMKASEPQ---------------NQLTSSSNGGRNGGNERGESYMYNLNHGHHQWRTSSPQVMAAAAASSGFPQVMERPKNWLQKNGFQTVMRPS 504
MW+LNDSP +R D ++ EGCS+P++ + D KGKRVGS+SNSSSSA++IE+GS++ED + +KRSS+IFGFSVT + VTRQFFPV +S + GGG A PRAHWVGVKFC SEP+G G K+ + + PLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSL DYEDDLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFD EIEAARAYDKAAIKCNGK+AVTNFDPSIY+NE++ T S AD NLDLSLG SA KQ RE G GD + A + H++S FE W+++ RPK ++QQE RN+ D+ RR G ++ ET+QL S T+LQS SS + +EMHRY QF+KA EPQ Q SSSNGGR G N S L+ G QW+++ PQ+ A AAASSGFPQ + RP++W+QKNGF VMRPS
Sbjct: 1 MWDLNDSPDQRRD----------EESEGCSSPVDEYD----DDKGKRVGSLSNSSSSALVIEEGSEEEDGERGRRKRSSKIFGFSVTHNNDNCSSESELPVTRQFFPVEDSETGTKSGGGGGCVGATTLPRAHWVGVKFCQSEPLGGGVGKSIEVSQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPSIYENEIDSSTADCPSNVADQNLDLSLGNSAMKQNSREMG-GDVQNPAMDLHSASMPFEVDWRNQGFRPKLNLQQEPHRNEIDAHRRAGFHETETMQLLSQTHLQSPSSLKANEMHRYGQFVKAGEPQMFHMFQPQLSSSSFLTQFPSSSNGGRFGANGGDLS----LSTGDQQWQSNPPQLFATAAASSGFPQQINRPQHWMQKNGFHYVMRPS 518
BLAST of DCAR_025748 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2R6PAC1 ((Floral homeotic protein like {ECO:0000313|EMBL:PSR87964.1}))
HSP 1 Score: 541.191 bits (1393), Expect = 0.000e+0
Identity = 332/531 (62.52%), Postives = 378/531 (71.19%), Query Frame = 0
Match: A0A2R6PAC1 ((Floral homeotic protein like {ECO:0000313|EMBL:PSR87964.1}))
HSP 1 Score: 541.191 bits (1393), Expect = 0.000e+0
Identity = 332/531 (62.52%), Postives = 378/531 (71.19%), Query Frame = 0
Query: 1 MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGSISNSSSSAVLIEDGSDDEDDDGVGKKRS-SRIFGFSVT----------DEPAVVTRQFFPVNESSESVEGGGGANTAAGFPRAHWVGVKFCHSE-PVGSGEKAADFTHPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKCNGKEAVTNFDPSIYQNELNPTESSSSQPADHNLDLSLGGSASKQREHGIGDG-RATNQHTSSTQFEWKDREIRPKPSMQQE-FIRNKFDSGRRDGLNQMETLQLSSNTNLQS--SSSFRPSEMHRYEQF-----MKASEPQNQLTSSSNGGRNGGNERGESYMYNLNHGHHQWRTSSP---QVMAAAAASSGFPQ---VMERPKNWLQKNGFQTVMRPS 504
MW+LNDSP D +D+ E CS +G+ D KGKRVGS+SNSSSSAV +D+DG G+KRS S+IFGFSVT D P VT QFFP ++ GGGGA A FPRAHWVGV+FC SE PV + K + T PLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAH+AARAYDRAAIKFRGVEADINF+L DYE+DLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFD EIEAARAYDKAAIKCNGKEAVTNFDPSIY++ELN TE S +P+DHNLDLSLG SASKQ+ H I D R T+ T +W++RE +PK + QQE FIR S RRDG N+ +T+QL S T++ +SSF+P+EM RY +F M Q Q SSS G NG G+ + H + Q +P QV A+AAASSGFPQ + P+NWLQ+NGF MRPS
Sbjct: 1 MWDLNDSP---------DPTTRDDESEVCS----YGD----DDKGKRVGSVSNSSSSAV--------DDEDGGGRKRSGSKIFGFSVTRPDDSFSSESDPP--VTHQFFPASD------GGGGA---ANFPRAHWVGVRFCQSEAPVAAAGKFTETTQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVEADINFTLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYEDELNSTE-CSGKPSDHNLDLSLGSSASKQKSHDIADDQRHTSMPIEVT--DWRNREFQPKINFQQEQFIR----SDRRDGYNETDTMQLLSQTHINQTPTSSFKPNEMQRYGKFAHELHMFPPHYQVQCPSSSTNG-NG----GKLSLSTSEHQNWQLNIVNPPPGQVFASAAASSGFPQQKIITTAPQNWLQQNGFHFSMRPS 483
BLAST of DCAR_025748 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A7G8AU71 ((AP2/ERF transcription factor {ECO:0000313|EMBL:QNI23740.1}))
HSP 1 Score: 526.939 bits (1356), Expect = 0.000e+0
Identity = 334/539 (61.97%), Postives = 387/539 (71.80%), Query Frame = 0
Match: A0A7G8AU71 ((AP2/ERF transcription factor {ECO:0000313|EMBL:QNI23740.1}))
HSP 1 Score: 526.939 bits (1356), Expect = 0.000e+0
Identity = 334/539 (61.97%), Postives = 387/539 (71.80%), Query Frame = 0
Query: 1 MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGSISNSSSSAVLIEDGSDDEDDDGVGKKRSSRIFGFSVT---------DEPAVVTRQFFPVNESSESVEGGGGANT--AAGFPRAHWVGVKFCHSEP-VGSGEKAADFTHPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKCNGKEAVTNFDPSIYQNELNPTESSSSQPADHNLDLSLGGSASKQREHGIG---DGRATNQHTSSTQFE--WKDREIRPKPSMQQEFIRNKFDSGRRDGLNQMETLQLSSNTNLQSSSSFRPSEMHRYEQFMKASEPQN---------------QLTSSSNGGR---NGGNERGESYMYNLNHGHHQWRTSSPQVMAAAAASSGFPQVMERPKNWLQKNGFQTVMRPS 504
MW+LNDSP +R D ++ EGCS+P++ G D KGKRVGS+SNSSSSAV+IE+GS++E+ KRSS+IFGFSV+ EP V TRQFFPV +S + GGG A PRAHWVGVKFC SEP VG K+ + + PLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSL DYEDDLKQM NLTKEEFVHVLRRQS+GFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFD EIEAARAYDKAAIKCNGK+AVTNFD SIY+NE++ + + A NLDLSLG SA +Q G N H++S FE W +R R K ++ QE RN+ D+ RR+G N+ ET+QL S T++QS +S + +EMHRYEQFMKA EPQ Q SSSNGGR NGG+ ++L+ QW+ S+PQ+ A AAASSGFPQ + RP+ WLQKNGF + RPS
Sbjct: 1 MWDLNDSPDQRRD---------DEYSEGCSSPVDDGV---DDDKGKRVGSMSNSSSSAVVIEEGSEEEEGVRGRGKRSSKIFGFSVSHNSDNGSSESEPPV-TRQFFPVEDSETGAQSGGGVGCVGAINLPRAHWVGVKFCQSEPLVGGVGKSVEVSQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEDDLKQMSNLTKEEFVHVLRRQSSGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDSSIYENEIDSSAEITGIAAYRNLDLSLGNSALEQDNRKFGGDVQNPEMNLHSASMPFEVDWSNRGFRHKLNLPQEPHRNEIDARRREGFNETETMQLLSQTHIQSPNSPKANEMHRYEQFMKAGEPQMLHMFQPQLSSSTFQIQFPSSSNGGRLGVNGGD-------HSLSTSDQQWQ-SNPQLFATAAASSGFPQQINRPQQWLQKNGFHYLTRPS 518
BLAST of DCAR_025748 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A2C9UVB7 ((Uncharacterized protein {ECO:0000313|EMBL:OAY35492.1}))
HSP 1 Score: 522.702 bits (1345), Expect = 1.506e-180
Identity = 331/531 (62.34%), Postives = 382/531 (71.94%), Query Frame = 0
Match: A0A2C9UVB7 ((Uncharacterized protein {ECO:0000313|EMBL:OAY35492.1}))
HSP 1 Score: 522.702 bits (1345), Expect = 1.506e-180
Identity = 331/531 (62.34%), Postives = 382/531 (71.94%), Query Frame = 0
Query: 1 MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGSISNSSSSAVLIEDGSDDED---DDGVGKKRSSRIFGFSVT------DEPAVVTRQFFPVNESSESVEGGGGANTAAGFPRAHWVGVKFCHSEPVGSGEKAADFTHPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKCNGKEAVTNFDPSIYQNELNPTESSSSQPADHNLDLSLGGSASKQREHGIGDGR---ATNQHTSSTQFE--WKDREIRPKPSMQQEFIRNKFDSGRRDGLNQMETLQLSSNTNLQSSSSFRPSEMHRYEQFMKASEP----------QNQLTSSSNGGRNGGNERGESYMYNLNHGHHQWRTSSP---QVMAAAAASSGFPQVMERPKNWLQKNGFQTVMRPS 504
MW+LNDSP D +D+ EGCS+ +G D KGKRVGS+SNSSSSAV+IEDGSD+ED + G KKRS +IFGFSVT + +VTRQFFPV + GGG AGFPRAHWVGVKFC SE + S K+A+ + PLKKSRRGPRSRSSQYRGVT+YRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFS+ DYEDDLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFD EIEAARAYDKAAIKCNGKEAVTNFDPSIY+NELN +ESS + ADHNLDLSLG S SKQ G + R +Q ++ FE W++R IRPK ++ + + D RR+G + ET+QL S T++QS +E RY QF + E Q Q SSSNGGR G + Y+ +H QW++ P Q++A AAASSGFPQ + P+NWLQKNGF +++RPS
Sbjct: 1 MWDLNDSP----------DQTRDDESEGCSSQKTSLDG--EDEKGKRVGSMSNSSSSAVVIEDGSDEEDGSGERGRIKKRSGKIFGFSVTRDNSSMESDPLVTRQFFPVEDQEMGATSGGGGGVGAGFPRAHWVGVKFCQSESLAS-PKSAEVSQPLKKSRRGPRSRSSQYRGVTYYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSSESSGN-AADHNLDLSLGNSGSKQNSVGFSNDRQNAGMDQQSAPMAFEADWRNRGIRPKLNLSRS---DDSDDHRREGYCETETMQLLSQTHIQSPG----NEGQRYGQFKRPGENQMFHGFSPNYQMQFPSSSNGGRIGSDLSLSPSDYHHHHQQRQWQSRPPPPHQLVANAAASSGFPQQIRTPQNWLQKNGFHSILRPS 510
BLAST of DCAR_025748 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZKX6 ((Putative transcription factor APETALA2 isoform X1 {ECO:0000313|EMBL:MPA44664.1}))
HSP 1 Score: 513.457 bits (1321), Expect = 7.260e-177
Identity = 339/535 (63.36%), Postives = 392/535 (73.27%), Query Frame = 0
Match: A0A5B6ZKX6 ((Putative transcription factor APETALA2 isoform X1 {ECO:0000313|EMBL:MPA44664.1}))
HSP 1 Score: 513.457 bits (1321), Expect = 7.260e-177
Identity = 339/535 (63.36%), Postives = 392/535 (73.27%), Query Frame = 0
Query: 1 MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGSISNSSSSAVLIEDGSDDEDDD-GVGKKRSSRIFGFSVTD------EPAVVTRQFFPVNESS-ESVEGGGGANTAAGFPRAHWVGVKFCHSEPVGSG-EKAADFTHPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKCNGKEAVTNFDPSIYQNELNPTESSSSQPADHNLDLSLGG-SASKQREHGIG---DGRATNQHTSSTQFE--WKDREIRPKPSMQQEFIRNKFDSGRRDGLNQMETLQLSSNTNLQSSSSFRPSEMHRYEQFMKASEPQN---------------QLTSSSNGGRNGGNERGESYMYNLNHGHHQWRTSSP-QVMAAAAASSGFPQVMERPKNWLQKNGFQTVMRPS 504
MWNLNDSP +R + +D+ EGCS+P++ G+ D KGKRVGS+SNSSSSAV+IE+GS+DED + G K+ SS+IFGFSVTD EP V TRQFFP+ S + GGGG A FPRAHWVGVKFC SEP+ G +++ + PLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSL +YE+DLK+M NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFD EIEAARAYDKAAIKCNGK+AVTNFDPSIY+NEL+ TE + A NLDLSLG S KQ +G A +Q ++S FE W+++ RPK Q RN+ D+ RRDG N+ ET+QL S T+LQS SS + +EMHRY QF+KA EPQ Q SSSNGGR G N S L+ QW+++ P Q+ A AAASSGFPQ + RP++WLQ NGF +MRPS
Sbjct: 1 MWNLNDSPDQR---------RVDDESEGCSSPVD---GVEYD-KGKRVGSVSNSSSSAVVIEEGSEDEDGERGRRKRMSSKIFGFSVTDNCSSESEPPV-TRQFFPLEYSEMGTTPGGGGGCGATNFPRAHWVGVKFCQSEPLAGGVANSSEVSQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEEYEEDLKKMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPSIYENELDSTECPGN-AAGQNLDLSLGSTSVLKQNSRELGGEIQNPAMDQRSASMPFEVDWRNQGFRPKKETQ----RNEIDARRRDGFNETETMQLLSQTHLQSPSSLKANEMHRYGQFVKAGEPQMLHMFPAQLSSSNFQIQFPSSSNGGRLGANGGDLS----LSTSDQQWQSNPPHQLFATAAASSGFPQQINRPQHWLQ-NGFHYLMRPS 511
BLAST of DCAR_025748 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A5B6ZM57 ((Putative transcription factor APETALA2 isoform X1 {ECO:0000313|EMBL:MPA44671.1}))
HSP 1 Score: 509.99 bits (1312), Expect = 1.935e-175
Identity = 338/541 (62.48%), Postives = 385/541 (71.16%), Query Frame = 0
Match: A0A5B6ZM57 ((Putative transcription factor APETALA2 isoform X1 {ECO:0000313|EMBL:MPA44671.1}))
HSP 1 Score: 509.99 bits (1312), Expect = 1.935e-175
Identity = 338/541 (62.48%), Postives = 385/541 (71.16%), Query Frame = 0
Query: 1 MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGSISNSSSSAVLIEDGSDDEDDD-GVGKKRSSRIFGFSVT---------DEPAVVTRQFFPVNESSESVEGGGGANT--AAGFPRAHWVGVKFCHSEP---VGSGEKAADFTHPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKCNGKEAVTNFDPSIYQNELNPTESSSSQPADHNLDLSLGG-SASKQREHGIG---DGRATNQHTSSTQFE--WKDREIRPKPSMQQEFIRNKFDSGRRDGLNQMETLQLSSNTNLQSSSSFRPSEMHRYEQFMKASEPQN---------------QLTSSSNGGRNGGNERGESYMYNLNHGHHQWRTSSP-QVMAAAAASSGFPQVMERPKNWLQKNGFQTVMRPS 504
MW+LNDSP +R D D+ EGCS+P++ +GKRVGS+SNSSSSAV+IE+GSD+ED + G +KRSS IFGFSVT EP V TRQFFPV +S + GGG A PRAHWVGVKFC SEP G K+ + + PLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSL DYE+DLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFD EIEAARAYDKAAIKCNGK+AVTNFDPSIY+NEL+ TE + A NLDLSLG S KQ +G A +Q ++S FE W+++ RPK Q RN+ D+ RRDG N+ ET+QL S T+LQS SS + +EMHRY QF+KA EPQ Q SSSNGGR G N S L+ QW+++ P Q+ A AAASSGFPQ + RP++WLQ NGF +MRPS
Sbjct: 1 MWDLNDSPDQRRD----------DESEGCSSPVD-------GVEGKRVGSVSNSSSSAVVIEEGSDEEDGERGSRRKRSSMIFGFSVTHNDDNCSSESEPPV-TRQFFPVEDSEAGTKSGGGGGCVGATNLPRAHWVGVKFCQSEPRGGGGGVGKSTEVSQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPSIYENELDSTECPGN-AAGQNLDLSLGSTSVLKQNSRELGGEIQNPAMDQRSASMPFEVDWRNQGFRPKKETQ----RNEIDARRRDGFNETETMQLLSQTHLQSPSSLKANEMHRYGQFVKAGEPQMLHMFPAQLSSSNFQIQFPSSSNGGRLGANGGDLS----LSTSDQQWQSNPPHQLFATAAASSGFPQQINRPQHWLQ-NGFHYLMRPS 513
BLAST of DCAR_025748 vs. ExPASy Swiss-Prot and TrEMBL without DCAR
Match: A0A1L6CB26 ((AP2/ERF domain-containing transcription factor {ECO:0000313|EMBL:APQ47383.1}))
HSP 1 Score: 508.064 bits (1307), Expect = 1.648e-174
Identity = 323/546 (59.16%), Postives = 376/546 (68.86%), Query Frame = 0
Match: A0A1L6CB26 ((AP2/ERF domain-containing transcription factor {ECO:0000313|EMBL:APQ47383.1}))
HSP 1 Score: 508.064 bits (1307), Expect = 1.648e-174
Identity = 323/546 (59.16%), Postives = 376/546 (68.86%), Query Frame = 0
Query: 1 MWNLNDSPSRRMDGDDDDDDKSEDQEEGCSTPMNHGNGLVVDYKGKRVGSISNSSSSAVLIEDGSDDEDDD----GVGKKRSSRIFGFSVTDEPAV-----VTRQFFPVNE----SSESVEGGGGANTAAGFPRAHWVGVKFCHSEPVGSGEKAADFTHPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLGDYEDDLKQMCNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDNEIEAARAYDKAAIKCNGKEAVTNFDPSIYQNELNPTESS-SSQPADHNLDLSLGGSASKQREHGIGDGRATN----QHTSSTQFE--WKDREIRPKPSMQQEFIRNKFDSGRRDGLNQMETLQLSSNTNLQSSSSFRPSEMHRYEQFMKASEPQN----------QLTSSSNGGRNGGNERGES------------YMYNLNHGHHQWRTSSPQVMAAAAASSGFPQVMERPKNWLQKNGFQTVMRPS 504
MW+LNDSP +R D D+ EGCS+ +G D KGKRVGS+SNSSSSAVLIEDGS+DED G KKR+S+IFGFSV E ++ VTRQFFPV + ++ V GGG G+PRAHWVGVKFC SE K+ + + PLKKSRRGPRSRSSQYRGVT+YRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINF++ DYE+DLKQM NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFD EIEAARAYDKAAIKCNGKEAVTNFDPSIY+NE+N +ESS ++ ADHNLDLSLG S KQ G + N QH++S E W++R IRPK ++ F + D R+G +MET QL S T++Q+ +E RY QF ++ E Q Q SSSNGGR G + S + Q++A+AAASSGFPQ + P+NWLQKNGF +++RPS
Sbjct: 1 MWDLNDSPDQRRD----------DESEGCSSQKTSFDG--EDEKGKRVGSVSNSSSSAVLIEDGSEDEDGSAERGGRIKKRTSKIFGFSVPHEESIGSDPPVTRQFFPVEDQEMGATSGVGDGGGGGGGTGYPRAHWVGVKFCQSESSLGSPKSVEVSQPLKKSRRGPRSRSSQYRGVTYYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENEVNSSESSGNAAAADHNLDLSLGNSVPKQNIVGFSNNDRENVGMDQHSASMPLEADWRNRGIRPKLNL---FRNSDIDDHGREGYCEMETRQLLSQTHIQAPV----NEAQRYGQFRRSGETQVFHGFSPNYQIQFPSSSNGGRIGSDLSLSSGDHFHHHHQHQQRQWQYGPPPPPHPPHHHQLVASAAASSGFPQQIRTPQNWLQKNGFHSLLRPS 527
| Match Name | Stats | Description |
|---|---|---|
| A0A438FKK4 | E-Value: 0.000e+0, PID: 63.31 | (Floral homeotic protein APETALA 2 {ECO:0000313|EM... [more] |
| C1KBJ2 | E-Value: 0.000e+0, PID: 63.31 | (AP2 {ECO:0000313|EMBL:QOE83970.1}) (Transcription... [more] |
| F6H4H7 | E-Value: 0.000e+0, PID: 63.13 | (Uncharacterized protein {ECO:0000313|EMBL:CCB4704... [more] |
| A0A5J5BZ25 | E-Value: 0.000e+0, PID: 63.87 | (Uncharacterized protein {ECO:0000313|EMBL:KAA8547... [more] |
| A0A2R6PAC1 | E-Value: 0.000e+0, PID: 62.52 | (Floral homeotic protein like {ECO:0000313|EMBL:PS... [more] |
| A0A7G8AU71 | E-Value: 0.000e+0, PID: 61.97 | (AP2/ERF transcription factor {ECO:0000313|EMBL:QN... [more] |
| A0A2C9UVB7 | E-Value: 1.506e-180, PID: 62.34 | (Uncharacterized protein {ECO:0000313|EMBL:OAY3549... [more] |
| A0A5B6ZKX6 | E-Value: 7.260e-177, PID: 63.36 | (Putative transcription factor APETALA2 isoform X1... [more] |
| A0A5B6ZM57 | E-Value: 1.935e-175, PID: 62.48 | (Putative transcription factor APETALA2 isoform X1... [more] |
| A0A1L6CB26 | E-Value: 1.648e-174, PID: 59.16 | (AP2/ERF domain-containing transcription factor {E... [more] |
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back to topAnalysis:
| Name | Description |
|---|---|
An orange, doubled-haploid, Nantes-type carrot (DH1) was used for genome sequencing. We used BAC end sequences and a newly developed linkage map with 2,075 markers to correct 135 scaffolds with one or more chimeric regions. The resulting v2.0 assembly spans 421.5 Mb and contains 4,907 scaffolds (N50 of 12.7 Mb), accounting for ∼90% of the estimated genome size of 473 Mb. The scaftig N50 of 31.2 kb is similar to those of other high-quality genome assemblies such as potato and pepper. About 86% (362 Mb) of the assembled genome is included in only 60 superscaffolds anchored to the nine pseudomolecules. The longest superscaffold spans 30.2 Mb, 85% of chromosome 4. There are a few different naming schemes for this assembly. First there is the Phytozome genome ID 388: The authors' sequences and gene predictions were also submitted to Phytozome, and can be accessed at this address: https://phytozome-next.jgi.doe.gov/info/Dcarota_v2_0 LNRQ01: These sequences were then assigned GenBank accession numbers starting at LNRQ01000001.1 which corresponds to DCARv2_Chr1, up to LNRQ01004826.1 which corresponds to an unincorporated contig, DCARv2_C10750146. These reside in bioproject PRJNA268187, which is a subproject of umbrella project PRJNA285926. Assembly GCA_001625215.1: The genome assembly was later defined an accession number GCA_001625215.1 for assembly ASM162521v1 which consists of only the 9 chromosome sequences and the plastid assembly, which have accession numbers from CM004278.1 to CM004286.1 for the chromosomes and CM004358.1 for the plastid. The mitochondrial genome was not included because it is classified as an incomplete sequence. RefSeq: The assembly was then later added to RefSeq, and there another new set of identifiers was defined from NC_030381.1 to NC_030389.1 for the chromosomes, and from NW_016089425.1 to NW_016094239.1 for unincorporated scaffolds and contigs. These reside in bioproject PRJNA326436. Note that NCBI substituted different assembled organellar genomes from different genotypes for the RefSeq records. The NCBI Sequence report lists the correspondences between the various naming methods Link to the LNRQ01000000.1 master record at NCBI Raw Reads: Link to SRA accessions used for the genome assembly This genome is available in the CarrotOmics Blast Search | |
This analysis is a blastp search of all of the DCAR V1.0 Gene Prediction polypeptide sequences against combined ExPASy SwissProt and TrEMBL databases from Nov. 17, 2021. Prior to performing the blast search, the database was filtered to remove organisms not in the Viridiplantae, and also filtered to remove these same DCAR gene predictions. | |
For gene model prediction, mobile element–related repeats were masked using RepeatMasker. De novo prediction using AUGUSTUS v2.5.5, GENSCAN v.1.1.0, and GlimmerHMM-3.0.1 was trained using model species A. thaliana and S. lycoperisum training sets. The protein sequences of S. lycoperisum, Solanum tuberosum, A. thaliana, Brassica rapa, and Oryza sativa were mapped to the carrot genome using TBLASTN (BLAST All 2.2.23) and analyzed with GeneWise version 2.2.0. Carrot ESTs were aligned to the genome using BLAT and analyzed with PASA to detect spliced gene models. RNA-seq reads from 20 DH1 libraries were aligned with TopHat 2.0.9. Transcripts were predicted by Cufflinks. All gene models produced by de novo prediction, protein homology searches, and prediction and transcript-based evidence were integrated using GLEAN v1.1. Putative gene functions were assigned using the best BLASTP match to SwissProt and TrEMBL databases. Gene motifs and domains were determined with InterProScan version 4.7 against the ProDom, PRINTS, Pfam, SMART, PANTHER, and PROSITE protein databases. GO IDs for each gene were obtained from the corresponding InterPro entries. All genes were aligned against KEGG (release 58) proteins. Data from this analysis can be viewed in JBrowse here. |